Query 025785
Match_columns 248
No_of_seqs 188 out of 487
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:33:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.0 7.4E-07 2.5E-11 65.5 0.0 58 112-169 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.1 6E-06 2.1E-10 57.7 -5.3 47 117-163 7-60 (60)
3 2knc_A Integrin alpha-IIB; tra 34.9 72 0.0025 21.2 4.7 29 96-126 17-45 (54)
4 2l8s_A Integrin alpha-1; trans 34.4 76 0.0026 21.1 4.8 29 96-126 14-42 (54)
5 2k1a_A Integrin alpha-IIB; sin 21.2 1.3E+02 0.0046 18.8 3.9 27 96-124 15-41 (42)
6 1w53_A Phosphoserine phosphata 19.6 1.2E+02 0.0041 21.8 3.9 37 199-235 3-39 (84)
7 3ci9_A Heat shock factor-bindi 15.0 2.2E+02 0.0074 18.3 3.9 30 208-237 4-33 (48)
8 2wuj_A Septum site-determining 14.5 2.2E+02 0.0076 18.5 4.0 22 208-229 22-43 (57)
9 3arc_L Photosystem II reaction 13.9 1.6E+02 0.0053 18.0 2.7 20 188-207 15-34 (37)
10 4g8t_A Glucarate dehydratase; 10.4 88 0.003 29.0 1.3 28 38-65 133-162 (464)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.01 E-value=7.4e-07 Score=65.51 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=53.5
Q ss_pred HHHHHHhhhcCCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHhhhHhcccchHHHHH
Q 025785 112 FWVNISGLFNRSPSKVP-------RFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQLLV 169 (248)
Q Consensus 112 l~s~~~~~~~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d~~~~lk 169 (248)
+|..+.+.++|++..+| |+.+|+|++++.++.+...+|.++..+|++++++|+..|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 67777889999988887 88999999999999999999999999999999999998874
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.14 E-value=6e-06 Score=57.65 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=40.9
Q ss_pred HhhhcCCCCCCC-------ceecCHHHHHHHHHHHHHHHHHHHHHhhhHhcccc
Q 025785 117 SGLFNRSPSKVP-------RFVLPPEVFANIGTTVCANVNEALGLLQDISCGGK 163 (248)
Q Consensus 117 ~~~~~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~i~~g~d 163 (248)
.+.++|++..+| |+.+|+|.+++.++.+...+|.++..+|++++++|
T Consensus 7 lqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 7 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp TTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 345666665555 88999999999999999999999999999999987
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.91 E-value=72 Score=21.18 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025785 96 LTIVCFALVLGMLAQFFWVNISGLFNRSPSK 126 (248)
Q Consensus 96 ltlvs~illl~l~~lFl~s~~~~~~~k~~~~ 126 (248)
+++++-++++++++..+|. ++|++|.-++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 4556666666666666774 5788887554
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=34.43 E-value=76 Score=21.08 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 025785 96 LTIVCFALVLGMLAQFFWVNISGLFNRSPSK 126 (248)
Q Consensus 96 ltlvs~illl~l~~lFl~s~~~~~~~k~~~~ 126 (248)
+++++-++++++++..+|. ++|++|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 4556666666666666774 5788887653
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.22 E-value=1.3e+02 Score=18.76 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 025785 96 LTIVCFALVLGMLAQFFWVNISGLFNRSP 124 (248)
Q Consensus 96 ltlvs~illl~l~~lFl~s~~~~~~~k~~ 124 (248)
+++++-++++.+++..+|. ++|++|.-
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCC
Confidence 4555556666666666663 46777653
No 6
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=19.61 E-value=1.2e+02 Score=21.81 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=29.5
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025785 199 TLPVLYEKHEDKVDSFLNNVFQQLQNQYKKLDSGFLS 235 (248)
Q Consensus 199 TvP~lYekyqd~ID~~~~~~~~~i~~~y~~~~~kv~~ 235 (248)
+.+.+.++|++.++.++..-.++.-.+.++|...++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 4567889999999999987777777777778776654
No 7
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=15.05 E-value=2.2e+02 Score=18.32 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025785 208 EDKVDSFLNNVFQQLQNQYKKLDSGFLSKI 237 (248)
Q Consensus 208 qd~ID~~~~~~~~~i~~~y~~~~~kv~~ki 237 (248)
-..+-.+++....+++..++.+...+++||
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777765
No 8
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=14.46 E-value=2.2e+02 Score=18.54 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 025785 208 EDKVDSFLNNVFQQLQNQYKKL 229 (248)
Q Consensus 208 qd~ID~~~~~~~~~i~~~y~~~ 229 (248)
+++||.++..+...+...++..
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~ 43 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKK 43 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999988777666554443
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=13.91 E-value=1.6e+02 Score=17.95 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 025785 188 TVLYIGFVAAHTLPVLYEKH 207 (248)
Q Consensus 188 TLl~i~~v~~fTvP~lYeky 207 (248)
|-+|.|.++.|.+-+++..|
T Consensus 15 TSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhh
Confidence 55677777777777666554
No 10
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Probab=10.43 E-value=88 Score=29.00 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred chhccccCCCCC--CcccccccCCCccccc
Q 025785 38 SVTARFNRLFGR--QKPVHHLLGGGKSADV 65 (248)
Q Consensus 38 ~~~~~~~r~f~r--~~~~h~~lgggk~aDl 65 (248)
++.-..+-+.|+ ..|++++||||+..|-
T Consensus 133 AID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~ 162 (464)
T 4g8t_A 133 AIEAAMLDLLGQFLGVTVASLLGDGQQRDA 162 (464)
T ss_dssp HHHHHHHHHHHHHHTSBTGGGSTTSCCCSE
T ss_pred HHHHHHHHHHHHHcCCcHHHHhCCCCCCce
Confidence 344445666665 4699999999987654
Done!