Query 025785
Match_columns 248
No_of_seqs 188 out of 487
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 17:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025785.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025785hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 47.6 47 0.0034 26.4 9.1 33 192-224 141-177 (262)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 37.2 20 0.0015 22.4 4.1 31 129-159 27-57 (69)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 19.3 45 0.0033 18.8 2.7 20 188-207 15-34 (37)
4 d2gaua1 a.4.5.4 (A:152-232) Tr 19.3 67 0.0049 20.1 4.2 31 129-159 27-57 (81)
5 d1jb0i_ f.23.17.1 (I:) Subunit 12.5 81 0.0059 17.8 2.6 19 95-113 14-33 (38)
6 d1q90l_ f.23.24.1 (L:) PetL su 10.5 1.3E+02 0.0095 16.0 3.8 23 96-118 2-24 (32)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 10.3 1.2E+02 0.0089 15.5 3.6 19 105-123 7-25 (27)
8 d2gdqa2 d.54.1.1 (A:4-118) Hyp 10.2 31 0.0022 23.4 0.3 22 38-59 92-115 (115)
9 d1cjba_ c.61.1.1 (A:) Hypoxant 10.0 34 0.0025 26.8 0.5 30 197-226 28-64 (228)
10 d1ft9a1 a.4.5.4 (A:134-213) CO 9.7 1.6E+02 0.012 18.2 4.0 31 129-159 28-58 (80)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.64 E-value=47 Score=26.35 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH----HHHhChhHHHHHHHHHHHHHHH
Q 025785 192 IGFVAAHTLPV----LYEKHEDKVDSFLNNVFQQLQN 224 (248)
Q Consensus 192 i~~v~~fTvP~----lYekyqd~ID~~~~~~~~~i~~ 224 (248)
++.+.+.|+|- +|+++.++.++.++.+...+++
T Consensus 141 ~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~~ 177 (262)
T d1h2vc1 141 YVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKR 177 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 45566777773 6788888888888877666543
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.21 E-value=20 Score=22.44 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.9
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 025785 129 RFVLPPEVFANIGTTVCANVNEALGLLQDIS 159 (248)
Q Consensus 129 ~~~isee~v~~~a~~v~~~iN~~l~~lr~i~ 159 (248)
.+.++++.+-+++..-++.+|+.+..+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999998643
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.27 E-value=45 Score=18.78 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 025785 188 TVLYIGFVAAHTLPVLYEKH 207 (248)
Q Consensus 188 TLl~i~~v~~fTvP~lYeky 207 (248)
|-+|.|.++.|.+-+++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 55677777777777776654
No 4
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=19.26 E-value=67 Score=20.14 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.2
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 025785 129 RFVLPPEVFANIGTTVCANVNEALGLLQDIS 159 (248)
Q Consensus 129 ~~~isee~v~~~a~~v~~~iN~~l~~lr~i~ 159 (248)
.+.++++.+-+++..-++.+|+.+..+++--
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678999999999999999999999988653
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=12.48 E-value=81 Score=17.77 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=12.7
Q ss_pred hHHHHHHHHHH-HHHHHHHH
Q 025785 95 FLTIVCFALVL-GMLAQFFW 113 (248)
Q Consensus 95 lltlvs~illl-~l~~lFl~ 113 (248)
++.++|++.-. .+..+|+|
T Consensus 14 ~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 14 FIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 46677777643 56677776
No 6
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.53 E-value=1.3e+02 Score=15.96 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025785 96 LTIVCFALVLGMLAQFFWVNISG 118 (248)
Q Consensus 96 ltlvs~illl~l~~lFl~s~~~~ 118 (248)
+|+.+|+.++.-+..|..+....
T Consensus 2 lti~syvglligal~~tlgiylg 24 (32)
T d1q90l_ 2 LTITSYVGLLIGALVFTLGIYLG 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHH
Confidence 57778887776665554444333
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.29 E-value=1.2e+02 Score=15.49 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q 025785 105 LGMLAQFFWVNISGLFNRS 123 (248)
Q Consensus 105 l~l~~lFl~s~~~~~~~k~ 123 (248)
..+++.|.|+.++-..+|.
T Consensus 7 v~llvvftwsiamvvwgrn 25 (27)
T d2e74h1 7 VALLVVFTWSIAMVVWGRN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhhheeeeEEEccC
Confidence 3566778888877666553
No 8
>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Probab=10.22 E-value=31 Score=23.37 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=15.7
Q ss_pred chhccccCCCCCC--cccccccCC
Q 025785 38 SVTARFNRLFGRQ--KPVHHLLGG 59 (248)
Q Consensus 38 ~~~~~~~r~f~r~--~~~h~~lgg 59 (248)
++.-..+-++||. +|++++|||
T Consensus 92 aid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 92 AVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHcCC
Confidence 4444466677754 699999998
No 9
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=9.97 E-value=34 Score=26.79 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=22.1
Q ss_pred HHHHHHHHHhC-------hhHHHHHHHHHHHHHHHHH
Q 025785 197 AHTLPVLYEKH-------EDKVDSFLNNVFQQLQNQY 226 (248)
Q Consensus 197 ~fTvP~lYeky-------qd~ID~~~~~~~~~i~~~y 226 (248)
+|++|-.|++| +++|.+-+++...++.+.|
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y 64 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVY 64 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 58899999988 4567777777766766655
No 10
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.71 E-value=1.6e+02 Score=18.19 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=26.6
Q ss_pred ceecCHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 025785 129 RFVLPPEVFANIGTTVCANVNEALGLLQDIS 159 (248)
Q Consensus 129 ~~~isee~v~~~a~~v~~~iN~~l~~lr~i~ 159 (248)
.+.++++.+-+++..-++.+|+.+..+++--
T Consensus 28 ~~~~t~~eiA~~lG~sretvsr~l~~l~~~g 58 (80)
T d1ft9a1 28 SVDFTVEEIANLIGSSRQTTSTALNSLIKEG 58 (80)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999988653
Done!