BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025787
MSTCRAIIRTSFSFVESKFYFLPSKSFLSLSLRSQKPGPISPYSVRTRQYGSVQAAISLE
NGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSMESLSNKRWFPYLD
RYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRS
ADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTH
VGMDACCA

High Scoring Gene Products

Symbol, full name Information P value
AT5G15390 protein from Arabidopsis thaliana 4.8e-62
DDB_G0271370
tRNA guanosine-2'-O-methyltransferase
gene from Dictyostelium discoideum 1.4e-09
CPS_4975
tRNA (guanosine-2'-O-)-methyltransferase
protein from Colwellia psychrerythraea 34H 0.00057

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025787
        (248 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2151001 - symbol:AT5G15390 species:3702 "Arabi...   634  4.8e-62   1
DICTYBASE|DDB_G0271370 - symbol:DDB_G0271370 "tRNA guanos...   155  1.4e-09   1
TIGR_CMR|CPS_4975 - symbol:CPS_4975 "tRNA (guanosine-2'-O...   108  0.00057   1


>TAIR|locus:2151001 [details] [associations]
            symbol:AT5G15390 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
            processing" evidence=IEA;ISS] [GO:0008173 "RNA methyltransferase
            activity" evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
            InterPro:IPR001537 Pfam:PF00588 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0008173
            GO:GO:0001510 EMBL:AL353993 eggNOG:COG0566 EMBL:AK228831
            IPI:IPI00546903 PIR:T49974 RefSeq:NP_197043.1 UniGene:At.31808
            ProteinModelPortal:Q9LXE4 SMR:Q9LXE4 PaxDb:Q9LXE4 PRIDE:Q9LXE4
            EnsemblPlants:AT5G15390.1 GeneID:831391 KEGG:ath:AT5G15390
            TAIR:At5g15390 HOGENOM:HOG000006028 InParanoid:Q9LXE4 OMA:GLSDFGN
            PhylomeDB:Q9LXE4 ProtClustDB:CLSN2687459 Genevestigator:Q9LXE4
            Uniprot:Q9LXE4
        Length = 350

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 136/251 (54%), Positives = 171/251 (68%)

Query:     1 MSTCRAIIR---TSFSFVEX---XXXXXXXXXXXXXXXXXXXPGPISPYSVRTRQYGSVQ 54
             M++C+++IR   +SF FV                        P      + R   +G+V 
Sbjct:     1 MNSCKSLIRASISSFPFVPLPNPNFSITFISVRAFSPLSVLHPNSSCIVTARRTFHGAV- 59

Query:    55 AAISLENGNNLIDDENDTPSKDNVEKLLT-NPDDVTQFMKMERSCMVNDGVGSMESLSNK 113
              A+S E+    + +E+  P KD V+ LLT N  + +  MKMER C +++G G        
Sbjct:    60 -ALSPES----LTEES--P-KDTVKGLLTTNRGEASSLMKMERRCSLSNGEGDCRG---- 107

Query:   114 RWFPYLDRYKCGDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGN 173
              WFPY DR++CG+V+LSS EV+EA+SP++MEER +RF  VV+NRSYSVCLVVEGLSDFGN
Sbjct:   108 SWFPYEDRFRCGEVHLSSREVLEAVSPHMMEERTDRFRRVVENRSYSVCLVVEGLSDFGN 167

Query:   174 VSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRG 233
             +SA FRSADALG+QSVHVVSCDSSKRY  NRHVSMGAEKWLDIE WD P+ECF VL+SRG
Sbjct:   168 ISAAFRSADALGIQSVHVVSCDSSKRYNGNRHVSMGAEKWLDIEFWDTPKECFKVLKSRG 227

Query:   234 YRIATTHVGMD 244
             YRIATTH+GMD
Sbjct:   228 YRIATTHLGMD 238


>DICTYBASE|DDB_G0271370 [details] [associations]
            symbol:DDB_G0271370 "tRNA
            guanosine-2'-O-methyltransferase" species:44689 "Dictyostelium
            discoideum" [GO:0008173 "RNA methyltransferase activity"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0001510 "RNA
            methylation" evidence=IEA] InterPro:IPR001537 Pfam:PF00588
            dictyBase:DDB_G0271370 GO:GO:0003723 EMBL:AAFI02000006
            GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 eggNOG:COG0566 KO:K00556
            RefSeq:XP_645653.1 ProteinModelPortal:Q55BF9
            EnsemblProtists:DDB0216794 GeneID:8617845 KEGG:ddi:DDB_G0271370
            InParanoid:Q55BF9 OMA:CENLENQ ProtClustDB:CLSZ2729263
            Uniprot:Q55BF9
        Length = 310

 Score = 155 (59.6 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/107 (28%), Positives = 62/107 (57%)

Query:   132 SEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHV 191
             + V   + P++ ++R +RF + + NR+    +V E L + GN +A  RSADA+G+Q++ +
Sbjct:    26 NNVSNKIKPFISDKRLKRFEDSINNRNKRFIIVCENLDNPGNFAAVVRSADAIGIQNLCL 85

Query:   192 VSCDSS--KRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRI 236
             ++   +    + +   VS+G+ KW+ +  + +  +C   L+ +GY I
Sbjct:    86 INEGGNLDSNFEKYDRVSLGSGKWVTVNKYYSTTKCIEKLKEQGYSI 132


>TIGR_CMR|CPS_4975 [details] [associations]
            symbol:CPS_4975 "tRNA (guanosine-2'-O-)-methyltransferase"
            species:167879 "Colwellia psychrerythraea 34H" [GO:0006396 "RNA
            processing" evidence=ISS] [GO:0009020 "tRNA
            (guanosine-2'-O-)-methyltransferase activity" evidence=ISS]
            InterPro:IPR001537 InterPro:IPR022724 Pfam:PF00588 Pfam:PF12105
            GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0001510
            eggNOG:COG0566 GO:GO:0009020 HOGENOM:HOG000285175 KO:K00556
            ProtClustDB:PRK11081 RefSeq:YP_271614.1 ProteinModelPortal:Q47UA9
            STRING:Q47UA9 GeneID:3523112 KEGG:cps:CPS_4975 PATRIC:21472743
            OMA:VEKPHNL BioCyc:CPSY167879:GI48-4976-MONOMER Uniprot:Q47UA9
        Length = 235

 Score = 108 (43.1 bits), Expect = 0.00057, P = 0.00057
 Identities = 23/97 (23%), Positives = 47/97 (48%)

Query:   145 ERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR 204
             ER  R   ++  R   + + +EGL    N++A  R+ DA+G+  VH V        R   
Sbjct:     4 ERLARINTMLDKRQPDLTVCMEGLHKSHNLAAVVRTCDAIGISDVHAVWKSEEAEVRGGS 63

Query:   205 HVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHV 241
               + G++ W+D+  +    +    L+++G ++  T++
Sbjct:    64 --AAGSQNWIDVHNYHKTADAIAALKAQGMQVLVTNL 98


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      248       228   0.00081  113 3  11 22  0.40    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.68u 0.10s 21.78t   Elapsed:  00:00:01
  Total cpu time:  21.68u 0.10s 21.78t   Elapsed:  00:00:01
  Start:  Sat May 11 02:31:29 2013   End:  Sat May 11 02:31:30 2013

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