BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025787
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O51081|Y052_BORBU Putative tRNA/rRNA methyltransferase BB_0052 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0052 PE=3 SV=1
Length = 218
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 135 VEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC 194
+ LS ++ +E+K R V+ R+ + V+E + N SAT R+ + LG+ VHV+
Sbjct: 9 IGVLSKFITDEKKARIEKVLNLRTNYLTFVLEDIFQSQNASATIRTGEILGLSDVHVI-- 66
Query: 195 DSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
+ ++ N V++G+ +W+++ + + + L+S GY I T
Sbjct: 67 EKKNKHTLNPDVTLGSSQWINLNKYKNAKFAIDRLKSDGYSIVAT 111
>sp|O67577|TRMH_AQUAE tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=trmH PE=1 SV=1
Length = 211
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR 201
++E+R +R V++ R + + + + + N SA R+ DA+GV ++ + K+ +
Sbjct: 7 VLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEG-KKAK 65
Query: 202 ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAC 246
N ++ G+ KW+ IE D P + ++RG++I T + ++
Sbjct: 66 INEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESV 110
>sp|P0AGJ4|TRMH_SHIFL tRNA (guanosine(18)-2'-O)-methyltransferase OS=Shigella flexneri
GN=trmH PE=3 SV=1
Length = 229
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAC 246
+ G+ W+ ++ + L+ +G +I TH+ +A
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAV 103
>sp|P0AGJ2|TRMH_ECOLI tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
(strain K12) GN=trmH PE=1 SV=1
Length = 229
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAC 246
+ G+ W+ ++ + L+ +G +I TH+ +A
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAV 103
>sp|P0AGJ3|TRMH_ECO57 tRNA (guanosine(18)-2'-O)-methyltransferase OS=Escherichia coli
O157:H7 GN=trmH PE=3 SV=1
Length = 229
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 146 RKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRH 205
R R ++ R + + +E + NVSA R+ADA+GV VH V S R R
Sbjct: 5 RYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMAS 62
Query: 206 VSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGMDAC 246
+ G+ W+ ++ + L+ +G +I TH+ +A
Sbjct: 63 AAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNAV 103
>sp|Q9CJP3|RLMB_PASMU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pasteurella
multocida (strain Pm70) GN=rlmB PE=3 SV=1
Length = 245
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 153 VVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGA 210
+++N+S + LV++G++D N+ A R+ADA GV +V V S++ R V+ GA
Sbjct: 88 LLQNQSNPLLLVLDGVTDPHNLGACLRTADAAGVCAVIVPKDKSAQLTAIARKVACGA 145
>sp|Q82WD0|IF2_NITEU Translation initiation factor IF-2 OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=infB PE=3 SV=1
Length = 889
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 127 VYLSSSEVVEALSPYLMEERKERFVNVVKNRS-YSV--------CLVVEGLSDFGNVSAT 177
+Y + EV +ALS +M +RKE+ + +V R Y + C V+EGL +
Sbjct: 771 IYEAVDEVKKALSGMMMPDRKEKILGMVDIREIYRISKVGVVAGCYVLEGLIKRDALVRL 830
Query: 178 FRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKWLDIE 217
R D L +H S DS KR++E+ R V G E L ++
Sbjct: 831 LR--DGL---VIHSGSLDSLKRFKEDVREVKSGFECGLSLK 866
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2
Length = 249
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY E K YS ++++GL D N+ + R+ADA GV +V +
Sbjct: 69 VAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
S + S GA + + + + + L+ G+ IA T
Sbjct: 129 RRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGT 174
>sp|Q5HRM1|TRMHL_STAEQ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3
SV=1
Length = 249
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%)
Query: 134 VVEALSPYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193
V ++PY E K YS ++++GL D N+ + R+ADA GV +V +
Sbjct: 69 VAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILRTADASGVDAVIIPK 128
Query: 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
S + S GA + + + + + L+ G+ IA T
Sbjct: 129 RRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGT 174
>sp|Q9JZR3|RLMB_NEIMB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmB PE=3 SV=1
Length = 250
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 127 VYLSSSEVVEALSPYLMEERKERFVNVVKNRSY-----------SVCLVVEGLSDFGNVS 175
VY + ++ + A+S + F++ KN + + L+++G++D N+
Sbjct: 52 VYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLG 111
Query: 176 ATFRSADALGVQSV 189
A R+ADA+GV +V
Sbjct: 112 ACLRTADAMGVHAV 125
>sp|Q9JUU8|RLMB_NEIMA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmB PE=3 SV=2
Length = 250
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 127 VYLSSSEVVEALSPYLMEERKERFVNVVKNRSY-----------SVCLVVEGLSDFGNVS 175
VY + ++ + A+S + F++ KN + + L+++G++D N+
Sbjct: 52 VYFADADRLNAISKGARHQGVVGFIDASKNHVHLEDVLENLSEPPLLLILDGITDPHNLG 111
Query: 176 ATFRSADALGVQSV 189
A R+ADA+GV +V
Sbjct: 112 ACLRTADAMGVHAV 125
>sp|Q2Y7W2|IF2_NITMU Translation initiation factor IF-2 OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=infB PE=3 SV=1
Length = 876
Score = 34.7 bits (78), Expect = 0.72, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 127 VYLSSSEVVEALSPYLMEERKERFVNVVKNR---------SYSVCLVVEGLSDFGNVSAT 177
+Y + E+ ALS + ERKE +++ R + + CLV EG G++
Sbjct: 758 IYEAVDEIKAALSGMMAPERKENITGLLEIREVFRISKVGAVAGCLVQEGFVRRGSLVRV 817
Query: 178 FRSADALGVQSVHVVSCDSSKRYREN-RHVSMGAEKWLDIE 217
R+ Q +H DS KR++++ + V G E L ++
Sbjct: 818 IRNG-----QVIHTGELDSLKRFKDDVKEVRAGFECGLSLK 853
>sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rlmB PE=3 SV=1
Length = 248
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYR 201
++EE ER + + L ++G++D N+ A R+ADA GVQ+V V S+
Sbjct: 85 MLEELLER------SEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNA 138
Query: 202 ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
R V+ GA + + + L+ RG + T
Sbjct: 139 TVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGT 176
>sp|Q7VQP0|RLMB_BLOFL 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Blochmannia
floridanus GN=rlmB PE=3 SV=1
Length = 254
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 140 PYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHV 191
P L E+ F+ KN + LV++G++D N+ A RSADA GV + V
Sbjct: 78 PALNEDYLLHFLKT-KNNIIPLLLVLDGITDPHNLGACIRSADAAGVHMIIV 128
>sp|Q8AYS7|CENPI_CHICK Centromere protein I OS=Gallus gallus GN=CENPI PE=1 SV=1
Length = 753
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 48 RQYGSVQAAISLENGNNLIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSM 107
R+ G+V S +N +L D +ND +D++E+ L+ + + + +++S ++ + +M
Sbjct: 28 RKGGTVDTEKSAQNRQSLSDQKNDN-EQDSLEQALSYFEKIQDRVSLKKSEVLQKHLSTM 86
Query: 108 ESLSNKRWFP 117
ES++ KR P
Sbjct: 87 ESIALKRGLP 96
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 134 VVEALSPY-------LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGV 186
V ++PY ++++KE+ S L+++GL D N+ + R+ADA GV
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEK-------EGLSTVLILDGLEDPHNLGSILRTADATGV 121
Query: 187 QSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
V + S + S GA + + + + + L+ G+ +A T
Sbjct: 122 DGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGT 174
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 134 VVEALSPY-------LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGV 186
V ++PY ++++KE+ S L+++GL D N+ + R+ADA GV
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEK-------EGLSTVLILDGLEDPHNLGSILRTADATGV 121
Query: 187 QSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
V + S + S GA + + + + + L+ G+ +A T
Sbjct: 122 DGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGT 174
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 134 VVEALSPY-------LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGV 186
V ++PY ++++KE+ S L+++GL D N+ + R+ADA GV
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEK-------EGLSTVLILDGLEDPHNLGSILRTADATGV 121
Query: 187 QSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
V + S + S GA + + + + + L+ G+ +A T
Sbjct: 122 DGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGT 174
>sp|Q7A794|TRMHL_STAAN Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain N315) GN=SA0490 PE=1 SV=1
Length = 248
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 134 VVEALSPY-------LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGV 186
V ++PY ++++KE+ S L+++GL D N+ + R+ADA GV
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEK-------EGLSTVLILDGLEDPHNLGSILRTADATGV 121
Query: 187 QSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
V + S + S GA + + + + + L+ G+ +A T
Sbjct: 122 DGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGT 174
>sp|Q99W72|TRMHL_STAAM Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1
Length = 248
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 134 VVEALSPY-------LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGV 186
V ++PY ++++KE+ S L+++GL D N+ + R+ADA GV
Sbjct: 69 VAALIAPYEYADFDQFLKQQKEK-------EGLSTVLILDGLEDPHNLGSILRTADATGV 121
Query: 187 QSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATT 239
V + S + S GA + + + + + L+ G+ +A T
Sbjct: 122 DGVIIPKRRSVTLTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWVAGT 174
>sp|Q49V41|TRMHL_STAS1 Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP2224 PE=3 SV=1
Length = 249
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219
S L+++GL D N+ + R+ADA GV V + S + S GA + + +
Sbjct: 95 STVLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRV 154
Query: 220 DAPRECFNVLRSRGYRIATT 239
L+ GY I T
Sbjct: 155 TNLANTIETLKDNGYWIVGT 174
>sp|Q10543|Y881_MYCTU Uncharacterized tRNA/rRNA methyltransferase Rv0881/MT0904
OS=Mycobacterium tuberculosis GN=Rv0881 PE=3 SV=1
Length = 288
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 VVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAP 222
V+EG++D N+ + FR+A L V +V + + YR VSMG + D P
Sbjct: 134 VLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWP 193
Query: 223 RECFNVLRSRGYRIATTHVGMDAC 246
E L+ G+R+ +AC
Sbjct: 194 TELMT-LKESGFRLLAMTPHGNAC 216
>sp|P59968|Y905_MYCBO Uncharacterized tRNA/rRNA methyltransferase Mb0905 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb0905 PE=3
SV=1
Length = 288
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 164 VVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAP 222
V+EG++D N+ + FR+A L V +V + + YR VSMG + D P
Sbjct: 134 VLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVPYARAADWP 193
Query: 223 RECFNVLRSRGYRIATTHVGMDAC 246
E L+ G+R+ +AC
Sbjct: 194 TELMT-LKESGFRLLAMTPHGNAC 216
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1
Length = 249
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 148 ERFVNVVKNR-SYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHV 206
++F+ K++ S ++++GL D N+ + R+ADA GV V + S +
Sbjct: 82 DQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKA 141
Query: 207 SMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237
S GA + + + + + L+ GY +A
Sbjct: 142 STGAIQHVPVMRVTNLAKTIDELKEHGYWVA 172
>sp|Q8ESK0|SPRTL_OCEIH Protein SprT-like OS=Oceanobacillus iheyensis (strain DSM 14371 /
JCM 11309 / KCTC 3954 / HTE831) GN=OB0634 PE=3 SV=1
Length = 150
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 125 GDVYLSSSEVVEALSPYLMEERKERFVNVVKNRSYSVCLVVEG 167
G YL S V+E Y++E KE F ++K+ L +EG
Sbjct: 39 GGRYLPSKRVIELNPKYVLESNKEEFYGIIKHELCHYHLHIEG 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,379,164
Number of Sequences: 539616
Number of extensions: 3365246
Number of successful extensions: 9282
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9260
Number of HSP's gapped (non-prelim): 29
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)