Query 025787
Match_columns 248
No_of_seqs 260 out of 1527
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk6_A 23S rRNA methyltransfer 99.9 2.3E-27 7.9E-32 214.6 11.8 162 65-243 7-202 (277)
2 1x7o_A Avirb, rRNA methyltrans 99.9 6.8E-26 2.3E-30 205.8 5.6 117 126-243 84-214 (287)
3 1ipa_A RRMH, RNA 2'-O-ribose m 99.9 8.3E-26 2.8E-30 204.0 6.1 115 126-243 75-197 (274)
4 2i6d_A RNA methyltransferase, 99.9 1E-25 3.5E-30 201.5 4.5 117 126-243 65-186 (257)
5 1gz0_A Hypothetical tRNA/RRNA 99.9 2.9E-24 9.9E-29 191.7 10.6 118 126-243 59-188 (253)
6 1v2x_A TRNA (GM18) methyltrans 99.9 3E-22 1E-26 172.1 10.5 103 142-246 4-106 (194)
7 1zjr_A TRNA (guanosine-2'-O-)- 99.9 4.5E-22 1.5E-26 173.3 9.1 106 140-246 5-110 (211)
8 3e5y_A TRMH family RNA methylt 99.8 3.4E-21 1.2E-25 160.9 4.1 85 159-243 4-88 (160)
9 3n4j_A RNA methyltransferase; 99.8 1.4E-20 4.7E-25 158.1 4.4 84 160-243 4-90 (165)
10 2ha8_A TAR (HIV-1) RNA loop bi 99.8 4.6E-20 1.6E-24 157.2 5.8 89 156-246 22-113 (184)
11 3l8u_A SMU.1707C, putative rRN 99.8 1.4E-19 4.9E-24 154.5 8.3 87 154-243 11-97 (182)
12 3kty_A Probable methyltransfer 99.7 2.6E-17 8.9E-22 138.5 4.6 80 160-243 10-92 (173)
13 3ilk_A Uncharacterized tRNA/RR 99.5 7.9E-15 2.7E-19 130.5 4.0 79 160-244 7-86 (244)
14 3ic6_A Putative methylase fami 99.5 2E-14 6.8E-19 126.6 3.6 82 160-245 17-118 (223)
15 3onp_A TRNA/RRNA methyltransfe 99.5 2.6E-14 9E-19 127.4 4.2 81 160-244 4-85 (249)
16 3dcm_X AdoMet, uncharacterized 85.6 0.68 2.3E-05 39.5 4.0 67 173-242 30-114 (192)
17 1jg5_A GTP cyclohydrolase I fe 56.7 23 0.0008 26.1 5.4 52 191-243 18-73 (83)
18 3g1w_A Sugar ABC transporter; 46.1 56 0.0019 27.1 7.1 47 149-195 25-71 (305)
19 3l6u_A ABC-type sugar transpor 33.3 1.3E+02 0.0045 24.5 7.4 44 150-194 30-73 (293)
20 3tb6_A Arabinose metabolism tr 32.0 1.7E+02 0.0057 23.8 7.8 45 149-194 36-80 (298)
21 8abp_A L-arabinose-binding pro 30.5 1.1E+02 0.0036 25.3 6.3 67 149-240 23-89 (306)
22 3ff4_A Uncharacterized protein 29.2 59 0.002 24.9 4.2 46 168-238 65-110 (122)
23 3gbv_A Putative LACI-family tr 26.8 1.2E+02 0.004 24.8 6.0 29 167-195 51-79 (304)
24 3iwp_A Copper homeostasis prot 25.9 1.1E+02 0.0038 27.3 5.8 64 145-211 194-259 (287)
25 2f06_A Conserved hypothetical 24.5 2.3E+02 0.0077 21.3 7.2 62 163-237 75-136 (144)
26 3o74_A Fructose transport syst 23.4 1.4E+02 0.0047 24.0 5.6 91 149-240 23-126 (272)
27 3rot_A ABC sugar transporter, 23.1 1.8E+02 0.0062 23.9 6.5 51 169-242 45-95 (297)
28 3m9w_A D-xylose-binding peripl 22.4 1.8E+02 0.0063 24.0 6.4 45 150-195 24-68 (313)
29 1lwj_A 4-alpha-glucanotransfer 22.2 70 0.0024 29.1 3.9 59 172-238 20-88 (441)
30 2fi0_A Conserved domain protei 21.5 47 0.0016 23.6 2.1 18 221-238 62-79 (81)
31 3uug_A Multiple sugar-binding 21.5 2.1E+02 0.0071 23.8 6.6 69 149-241 24-92 (330)
32 2h3h_A Sugar ABC transporter, 20.9 2E+02 0.0068 23.9 6.3 26 169-194 41-66 (313)
33 1k3r_A Conserved protein MT000 20.7 58 0.002 28.8 2.9 22 173-194 27-48 (268)
No 1
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=99.94 E-value=2.3e-27 Score=214.59 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=124.1
Q ss_pred ccccCCCCCchHHHHhhhcCcHHHHhHHHhhhhcCCCCCCCeE--E-----------------EeeccCcCCcCCCCc--
Q 025787 65 LIDDENDTPSKDNVEKLLTNPDDVTQFMKMERSCMVNDGVGSM--E-----------------SLSNKRWFPYLDRYK-- 123 (248)
Q Consensus 65 ~~~~~~~~~p~~~~~~ll~t~~~~~~L~~~~~r~~~~~~~glf--E-----------------~l~~~~~~~~~~~~~-- 123 (248)
+..|+++.+|+ ...|++|. + +.+.+.|+| | +|+++.+....+.+.
T Consensus 7 ~~~I~S~~n~~---------iK~~~~L~----~-k~R~~~g~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~~~l~~~~ 72 (277)
T 3nk6_A 7 PAIITNASDPA---------VQRIIDVT----K-HSRASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPALLDLC 72 (277)
T ss_dssp CCTTSBCSSCS---------HHHHHHHH----H-TC----CEEEEESHHHHHHHHHTTCCEEEEEEETTSCCCHHHHHHH
T ss_pred ceeecCCCChH---------HHHHHHHh----h-hhHhhcCCEEEEeHHHHHHHHhCCCCeEEEEEeCCccCcHHHHHHH
Confidence 45678888888 55566554 2 445677888 6 566665544311111
Q ss_pred --cC-cEEEccHHHHHHcCCCccchhhh---------hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEE
Q 025787 124 --CG-DVYLSSSEVVEALSPYLMEERKE---------RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHV 191 (248)
Q Consensus 124 --~~-~v~~vs~~vl~~ls~~~~~~R~~---------~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil 191 (248)
.. +++.+++++|++++++.+|++.. .+++++... .+ +||||+|+||||+|+|+|||+|||+++|++
T Consensus 73 ~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~~~~~~~-~~-~lvLd~v~dP~NlGaI~Rta~a~G~~~vil 150 (277)
T 3nk6_A 73 RQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAERG-GD-VVVLDGVKIVGNIGAIVRTSLALGAAGIVL 150 (277)
T ss_dssp HHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCCCHHHHHHHC-SC-EEEEESCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCCHHHHhccC-CC-EEEEEcCCCcchHHHHHHHHHHcCCCEEEE
Confidence 12 79999999999999998886542 566766432 35 999999999999999999999999999999
Q ss_pred cC-CCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEEEeeCC
Q 025787 192 VS-CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGM 243 (248)
Q Consensus 192 ~~-~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivAt~l~~ 243 (248)
.+ +++|+++++++|+|||+.+|+++.++ |+.++++.||++||++||++..+
T Consensus 151 ~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l~~lk~~g~~v~~~~~~~ 202 (277)
T 3nk6_A 151 VDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTDG 202 (277)
T ss_dssp ESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEECTTC
T ss_pred cCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHHHHHHhcCCeEEEEecCC
Confidence 99 88999999999999999999999998 99999999999999999999865
No 2
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=99.92 E-value=6.8e-26 Score=205.82 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=104.4
Q ss_pred cEEEccHHHHHHcCCCc-cchhhh--------hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCC
Q 025787 126 DVYLSSSEVVEALSPYL-MEERKE--------RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDS 196 (248)
Q Consensus 126 ~v~~vs~~vl~~ls~~~-~~~R~~--------~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~ 196 (248)
+++.+++++|++++++. +|++.. .+++++. ...+++||||+|+||||+|+|+|||+|||+++|++++.++
T Consensus 84 ~v~~v~~~~l~~ls~~~~~~qGv~a~~~~~~~~l~~~~~-~~~~l~lvLd~i~dP~NlGaIiRta~a~G~~~vil~~~~~ 162 (287)
T 1x7o_A 84 EQIAMAPDLLMELGEKNEAPPEVVAVVEMPADDLDRIPV-REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAA 162 (287)
T ss_dssp EEEEECHHHHTTSSCSSSCCCSEEEEEECCCCCGGGSCC-CTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred cEEEeCHHHHHHHhCCCCCCCcEEEEEecCCCCHHHHhc-ccCCEEEEEeCCCCcchHHHHHHHhHhcccCEEEEECCCc
Confidence 68999999999999998 887653 2333332 1246899999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCccceEEEEeCCHHHHHHHH---HHCCce--EEEEeeCC
Q 025787 197 SKRYRENRHVSMGAEKWLDIELWDAPRECFNVL---RSRGYR--IATTHVGM 243 (248)
Q Consensus 197 dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~L---k~~G~~--ivAt~l~~ 243 (248)
|+++++++|+|||+.+|+++.++.++.++++.| +++||+ ++|++..+
T Consensus 163 d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l~~l~~~~~~g~~~~i~~~~~~~ 214 (287)
T 1x7o_A 163 DVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHG 214 (287)
T ss_dssp CTTSHHHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHHTCCCEEEEECTTC
T ss_pred CccCHHHHhhhcCcceeeeEEEeCCHHHHHHHHHHHHhcCCceEEEEEECCC
Confidence 999999999999999999999999999999999 999999 99999863
No 3
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=99.92 E-value=8.3e-26 Score=204.03 Aligned_cols=115 Identities=21% Similarity=0.149 Sum_probs=101.7
Q ss_pred cEEEccHHHHHHcCCCccchhhh--------hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCC
Q 025787 126 DVYLSSSEVVEALSPYLMEERKE--------RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSS 197 (248)
Q Consensus 126 ~v~~vs~~vl~~ls~~~~~~R~~--------~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~d 197 (248)
+++.+++++|++++++.+|++.. .+++++. ...+++||||+|+||+|+|+|+|||+|||+++|++.+. +|
T Consensus 75 ~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~l~~~~~-~~~~~~lvLd~i~dp~NlGaI~Rta~a~G~~~vil~~~-~~ 152 (274)
T 1ipa_A 75 ALLEVSEAVLKKLSVRDNPAGLIALARMPERTLEEYRP-SPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGG-VD 152 (274)
T ss_dssp EEEEECHHHHHHHCCSSSCCSEEEEEECCCCCCCCCCC-CTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESC-CC
T ss_pred cEEEeCHHHHHHHhCCCCCCeEEEEEeCCCCCHHHHhc-cCCCeEEEEeCCCCcchHHHHHHHHHhhccCEEEEeCC-cC
Confidence 58999999999999999887754 1222211 12458999999999999999999999999999999999 99
Q ss_pred CCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEEEeeCC
Q 025787 198 KRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGM 243 (248)
Q Consensus 198 p~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivAt~l~~ 243 (248)
+++++++|+|||+.+|+++.+ .++.++++.|+++||++||++..+
T Consensus 153 ~~~~~v~ras~Ga~~~l~~~~-~~l~~~l~~l~~~g~~i~~~~~~~ 197 (274)
T 1ipa_A 153 LYSPQVIRNSTGVVFSLRTLA-ASESEVLDWIKQHNLPLVATTPHA 197 (274)
T ss_dssp TTCHHHHHHTTTGGGTSCEEE-ECHHHHHHHHHHTTCCEEEECTTC
T ss_pred cCCHHHHHHcCChhhcceeEe-CCHHHHHHHHHHcCCEEEEEeCCC
Confidence 999999999999999999988 899999999999999999999875
No 4
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=99.91 E-value=1e-25 Score=201.51 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=102.1
Q ss_pred cEEEccH-HHHHHcCCCccchhhhhHHHH----hhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCC
Q 025787 126 DVYLSSS-EVVEALSPYLMEERKERFVNV----VKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRY 200 (248)
Q Consensus 126 ~v~~vs~-~vl~~ls~~~~~~R~~~l~ev----l~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~ 200 (248)
+++.+++ ++|++++++.+|++...+-+. ++.- .+++||||+|+||+|+|+|+|||+|||+++|++++.++|+++
T Consensus 65 ~v~~v~~~~~l~~ls~~~~~qGv~a~~~~~~~~l~~~-~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~ 143 (257)
T 2i6d_A 65 EVVELPESFDFKRISTQTTPQPLMAVFDLPAEPEPVV-EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFS 143 (257)
T ss_dssp EEEEECTTCCGGGTCCSSSCCSEEEEEECCCCCCCCC-CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCTTS
T ss_pred CEEEeChHHHHHHHhcCCCCCeEEEEEECCCCChHHh-CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcCCCCCcCC
Confidence 6899999 999999999988776421110 1110 258999999999999999999999999999999999999999
Q ss_pred cccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEEEeeCC
Q 025787 201 RENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGM 243 (248)
Q Consensus 201 ~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivAt~l~~ 243 (248)
++++|+|||+.+|+++..+.++.++++.|+++||+++|++..+
T Consensus 144 ~~v~ras~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~~~~~~ 186 (257)
T 2i6d_A 144 PKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDG 186 (257)
T ss_dssp HHHHHTSTTGGGTCEEEECSCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHheecCCcceeeeEEEeCCHHHHHHHHHHCCCEEEEEECCC
Confidence 9999999999999999855899999999999999999999864
No 5
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=99.90 E-value=2.9e-24 Score=191.73 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=105.5
Q ss_pred cEEEccHHHHHHcCCCccchhhh------------hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcC
Q 025787 126 DVYLSSSEVVEALSPYLMEERKE------------RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVS 193 (248)
Q Consensus 126 ~v~~vs~~vl~~ls~~~~~~R~~------------~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~ 193 (248)
+++.+++++|++++++.+|++.. .+.++++.+..++++|||+++||+|+|||+|||+|||+++|++..
T Consensus 59 ~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~l~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~ 138 (253)
T 1gz0_A 59 VIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPK 138 (253)
T ss_dssp EEEEECSHHHHHTTTSCCCTTEEEEECCCCCCCGGGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cEEEeCHHHHHHHhCCCCCcEEEEEEeccccCcHHHHHHHHhccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeC
Confidence 68999999999999998876542 455555433457999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEEEeeCC
Q 025787 194 CDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGM 243 (248)
Q Consensus 194 ~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivAt~l~~ 243 (248)
+++|+++++++|+|||+.+|+++.++.++.++++.|+++||+++|++..+
T Consensus 139 ~~~~~~~~~~~ras~Ga~~~l~~~~~~~~~~~l~~l~~~g~~i~~~~~~~ 188 (253)
T 1gz0_A 139 DRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEA 188 (253)
T ss_dssp SSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCCHHHHhhhcchheEEEEEEeCCHHHHHHHHHHCCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999998653
No 6
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=99.87 E-value=3e-22 Score=172.09 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=92.5
Q ss_pred ccchhhhhHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCC
Q 025787 142 LMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDA 221 (248)
Q Consensus 142 ~~~~R~~~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~ 221 (248)
.++.|+.+++++++++..+++||||+++||+|+|+|+|||+|||+++|+++..+.++ +++.|+|||+.+|+++..+.+
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~--~~~~r~s~Ga~~~l~~~~~~~ 81 (194)
T 1v2x_A 4 RTEARRRRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV--PTFNETSGGSHKWVYLRVHPD 81 (194)
T ss_dssp CCCCHHHHHHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGS--CCCCSSCSSGGGTSEEEEESS
T ss_pred cchhhHhhHHHHHhcCCCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCc--hhhHHHCCCChheeeeEecCC
Confidence 345678899999987667899999999999999999999999999999999876664 789999999999999999999
Q ss_pred HHHHHHHHHHCCceEEEEeeCCCcc
Q 025787 222 PRECFNVLRSRGYRIATTHVGMDAC 246 (248)
Q Consensus 222 l~~~L~~Lk~~G~~ivAt~l~~~Av 246 (248)
+.++++.++++||+++|++...+++
T Consensus 82 l~~~l~~l~~~g~~i~~~~~~~~~~ 106 (194)
T 1v2x_A 82 LHEAFRFLKERGFTVYATALREDAR 106 (194)
T ss_dssp HHHHHHHHHHTTCEEEEECCCTTSE
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCc
Confidence 9999999999999999999765543
No 7
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=99.86 E-value=4.5e-22 Score=173.25 Aligned_cols=106 Identities=25% Similarity=0.427 Sum_probs=93.1
Q ss_pred CCccchhhhhHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEe
Q 025787 140 PYLMEERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELW 219 (248)
Q Consensus 140 ~~~~~~R~~~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~ 219 (248)
.+.++.|+.++++++++++.+++||||+++||+|+|+|+|||+|||+++|+++..+.++ ...+.|+|||+.+|+++..+
T Consensus 5 ~~~~~~~~~~~~~~l~~~~~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~-~~~~~r~s~Ga~~~l~~~~~ 83 (211)
T 1zjr_A 5 YLVLEKRLKRLREVLEKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKV 83 (211)
T ss_dssp -CHHHHHHHHHHHHHTTCEEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEEC
T ss_pred cccChhhHhhHHHHHhccCCCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc-hHHHHHHcCCCcccceeEec
Confidence 45678888899999986666799999999999999999999999999999999887664 22456999999999999999
Q ss_pred CCHHHHHHHHHHCCceEEEEeeCCCcc
Q 025787 220 DAPRECFNVLRSRGYRIATTHVGMDAC 246 (248)
Q Consensus 220 ~~l~~~L~~Lk~~G~~ivAt~l~~~Av 246 (248)
.++.++++.++++||+++|++...+++
T Consensus 84 ~~l~~~l~~l~~~g~~i~~~~~~~~~~ 110 (211)
T 1zjr_A 84 DNPVQKLLEFKNRGFQIVATWLSKESV 110 (211)
T ss_dssp SCHHHHHHHHHHTTCEEEEEBCSTTSE
T ss_pred CCHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 999999999999999999999875553
No 8
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=99.82 E-value=3.4e-21 Score=160.87 Aligned_cols=85 Identities=7% Similarity=-0.045 Sum_probs=79.6
Q ss_pred CceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEE
Q 025787 159 YSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (248)
Q Consensus 159 ~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivA 238 (248)
+.++||||+++||+|+|+|+|||+|||++.|++.+.+.|++++++.|+|||+.+|+++.++.++.++++.||++||+++|
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~~ 83 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFA 83 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEEEECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEEE
Confidence 45899999999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred EeeCC
Q 025787 239 THVGM 243 (248)
Q Consensus 239 t~l~~ 243 (248)
++..+
T Consensus 84 ~~~~~ 88 (160)
T 3e5y_A 84 FTTRG 88 (160)
T ss_dssp ECSTT
T ss_pred EecCC
Confidence 99764
No 9
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=99.80 E-value=1.4e-20 Score=158.08 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=78.9
Q ss_pred ceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHH---CCceE
Q 025787 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRS---RGYRI 236 (248)
Q Consensus 160 ~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~---~G~~i 236 (248)
.++||||+++||+|+|+|+|||+|||++.|++.+.+.|++.+++.|++||+.+|+++..+.+++++++.||+ +||++
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~i 83 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARL 83 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTTE
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEEEECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCCEE
Confidence 589999999999999999999999999999988888888888899999999999999999999999999999 99999
Q ss_pred EEEeeCC
Q 025787 237 ATTHVGM 243 (248)
Q Consensus 237 vAt~l~~ 243 (248)
+|++..+
T Consensus 84 ~~~~~~~ 90 (165)
T 3n4j_A 84 FALTTKG 90 (165)
T ss_dssp EEECTTC
T ss_pred EEEEcCC
Confidence 9999753
No 10
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=157.24 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=78.4
Q ss_pred cCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccc-cccCCCccceEEEEe--CCHHHHHHHHHHC
Q 025787 156 NRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENR-HVSMGAEKWLDIELW--DAPRECFNVLRSR 232 (248)
Q Consensus 156 ~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~-R~SmGA~~~v~i~~~--~~l~~~L~~Lk~~ 232 (248)
+++.+++||||+|+||+|+|+|+|||+|||+++|++.+ .++++++.+ |+|||+.+|+++..+ .++.++++.+|++
T Consensus 22 ~~~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~--~~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~~ 99 (184)
T 2ha8_A 22 KSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGS--LQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTE 99 (184)
T ss_dssp CCCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESC--GGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECC--CCCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHHC
Confidence 45567899999999999999999999999999999976 455677776 889999999999875 7999999999999
Q ss_pred CceEEEEeeCCCcc
Q 025787 233 GYRIATTHVGMDAC 246 (248)
Q Consensus 233 G~~ivAt~l~~~Av 246 (248)
||+++|++..+++.
T Consensus 100 g~~i~~~~~~~~~~ 113 (184)
T 2ha8_A 100 GYTIIGVEQTAKSL 113 (184)
T ss_dssp TCEEEEECCCTTCE
T ss_pred CCEEEEEECCCCCc
Confidence 99999999875543
No 11
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=99.79 E-value=1.4e-19 Score=154.48 Aligned_cols=87 Identities=9% Similarity=-0.023 Sum_probs=70.9
Q ss_pred hhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCC
Q 025787 154 VKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRG 233 (248)
Q Consensus 154 l~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G 233 (248)
.+++..+++||||+++||+|+|+|+|||+|||++.|++.+.+.|++++++.|+|||+.+++++..+.++.++++.+ |
T Consensus 11 ~~~~~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~l---g 87 (182)
T 3l8u_A 11 KLLTLGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNIC---S 87 (182)
T ss_dssp ----CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHHC---C
T ss_pred hhcCCCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHHC---C
Confidence 3455678999999999999999999999999999999998888888899999999999999999999999999988 9
Q ss_pred ceEEEEeeCC
Q 025787 234 YRIATTHVGM 243 (248)
Q Consensus 234 ~~ivAt~l~~ 243 (248)
|++++++..+
T Consensus 88 ~~i~~~~~~~ 97 (182)
T 3l8u_A 88 GKLHLITKFA 97 (182)
T ss_dssp SEEEEECSSC
T ss_pred CEEEEEEcCC
Confidence 9999998753
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=99.67 E-value=2.6e-17 Score=138.53 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=68.8
Q ss_pred ceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCC-CCCCC-CcccccccCCCccceEE-EEeCCHHHHHHHHHHCCceE
Q 025787 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC-DSSKR-YRENRHVSMGAEKWLDI-ELWDAPRECFNVLRSRGYRI 236 (248)
Q Consensus 160 ~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~-~~dp~-~~k~~R~SmGA~~~v~i-~~~~~l~~~L~~Lk~~G~~i 236 (248)
++++|||+++||+|+|+|+|||++||+++|+++.. +.|++ +++++|+|||+.+|+++ ..+++++++++.++ ++
T Consensus 10 ~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~~~----~v 85 (173)
T 3kty_A 10 RVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT----LA 85 (173)
T ss_dssp TEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTTCS----EE
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHhCC----eE
Confidence 68999999999999999999999999999998765 44654 89999999999999995 45689999888775 68
Q ss_pred EEEeeCC
Q 025787 237 ATTHVGM 243 (248)
Q Consensus 237 vAt~l~~ 243 (248)
+|++...
T Consensus 86 ~~t~~~~ 92 (173)
T 3kty_A 86 FALTTRV 92 (173)
T ss_dssp EEEECC-
T ss_pred EEEcccc
Confidence 8888754
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=99.49 E-value=7.9e-15 Score=130.53 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=68.2
Q ss_pred ceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceE-EEEeCCHHHHHHHHHHCCceEEE
Q 025787 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPRECFNVLRSRGYRIAT 238 (248)
Q Consensus 160 ~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~-i~~~~~l~~~L~~Lk~~G~~ivA 238 (248)
.+.||||+++||+|+|+|+|||++||+++|+++..+ +++++++|+|+||.++++ +..+++++++++.+ + .++|
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~GA~~~l~~~~~~~~l~eal~~~---~-~vva 80 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAVDDC---S-LVIG 80 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHTTTC---S-EEEE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcCChhheeceeEEeCCHHHHHHhC---C-eEEE
Confidence 589999999999999999999999999999999887 778999999999997776 34578988888765 3 7888
Q ss_pred EeeCCC
Q 025787 239 THVGMD 244 (248)
Q Consensus 239 t~l~~~ 244 (248)
++....
T Consensus 81 tt~~~~ 86 (244)
T 3ilk_A 81 TSARLR 86 (244)
T ss_dssp ECCCCG
T ss_pred EccCCC
Confidence 887644
No 14
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.46 E-value=2e-14 Score=126.64 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=68.0
Q ss_pred ceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCC-------------------CcccccccCCCccceEE-EEe
Q 025787 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKR-------------------YRENRHVSMGAEKWLDI-ELW 219 (248)
Q Consensus 160 ~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~-------------------~~k~~R~SmGA~~~v~i-~~~ 219 (248)
.++||||+++||+|+|+|+|||++||+++|+++..+++++ ++++.|+|+|+.++++. ..+
T Consensus 17 ~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v~ 96 (223)
T 3ic6_A 17 NIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEIV 96 (223)
T ss_dssp GEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEEE
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEEe
Confidence 5899999999999999999999999999999988776653 35899999999988764 446
Q ss_pred CCHHHHHHHHHHCCceEEEEeeCCCc
Q 025787 220 DAPRECFNVLRSRGYRIATTHVGMDA 245 (248)
Q Consensus 220 ~~l~~~L~~Lk~~G~~ivAt~l~~~A 245 (248)
++++++++.+ ++++|++...+.
T Consensus 97 ~~l~eal~~~----~~vvatt~~~~~ 118 (223)
T 3ic6_A 97 ATLDEALADT----TIACALTSRRRE 118 (223)
T ss_dssp SCHHHHHTTE----EEEEEECCSCC-
T ss_pred CCHHHHHHhC----CeEEEEeccCCc
Confidence 8888877654 578999876543
No 15
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=99.45 E-value=2.6e-14 Score=127.39 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred ceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceE-EEEeCCHHHHHHHHHHCCceEEE
Q 025787 160 SVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLD-IELWDAPRECFNVLRSRGYRIAT 238 (248)
Q Consensus 160 ~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~-i~~~~~l~~~L~~Lk~~G~~ivA 238 (248)
++.||||+++||+|+|+|+|+|++||+++++++..++++++++++|.|+|+.+.++ +..+++++++++.+ ..++|
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal~~~----~~v~a 79 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAIRDC----DYVFA 79 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHHTTC----SEEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHHHhC----CeEEE
Confidence 57999999999999999999999999999999998877778999999999996444 44478998888755 36888
Q ss_pred EeeCCC
Q 025787 239 THVGMD 244 (248)
Q Consensus 239 t~l~~~ 244 (248)
++....
T Consensus 80 tt~~~~ 85 (249)
T 3onp_A 80 TTARGR 85 (249)
T ss_dssp EESSCC
T ss_pred EcCCCC
Confidence 877544
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=85.64 E-value=0.68 Score=39.49 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHCCCeEEEcCCCCCCCCccccc------ccCCCc---------cceEEEEeCCHHHHHHHHHH---CCc
Q 025787 173 NVSATFRSADALGVQSVHVVSCDSSKRYRENRH------VSMGAE---------KWLDIELWDAPRECFNVLRS---RGY 234 (248)
Q Consensus 173 NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R------~SmGA~---------~~v~i~~~~~l~~~L~~Lk~---~G~ 234 (248)
|||.|.|++.-||++..+++....++. ..+.+ .+.|+. ..+.+ +++++++++.+.+ +++
T Consensus 30 dihdiARamkt~Gl~~l~LV~P~~~~~-~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~v--v~sL~eAl~~~~~~~g~~p 106 (192)
T 3dcm_X 30 DVHDIARTARTYNLKGYYIVTNLRAQQ-DMVSKMLKFWREGFGSRYNPSRAESLKLVKL--KSYLEDVLEDIESVEGERP 106 (192)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCHHHH-HHHHHHHHHHHTSGGGGTCSSSHHHHTTEEE--ESSHHHHHHHHHHHHSSCC
T ss_pred cHHHHHHHHHhcCCceEEEECCccccH-HHHHHHHHhhhcccCcccCcCHHHHhccCeE--ECCHHHHHHHHHhhcCCcc
Confidence 599999999999999999998764321 11222 245552 44444 5899999999974 678
Q ss_pred eEEEEeeC
Q 025787 235 RIATTHVG 242 (248)
Q Consensus 235 ~ivAt~l~ 242 (248)
.++||+..
T Consensus 107 ~vvaTsAr 114 (192)
T 3dcm_X 107 LIFFTSAK 114 (192)
T ss_dssp EEEECCSS
T ss_pred EEEEeCCC
Confidence 89998754
No 17
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=56.72 E-value=23 Score=26.09 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=37.0
Q ss_pred EcCCCCCCC----CcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEEEeeCC
Q 025787 191 VVSCDSSKR----YRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVGM 243 (248)
Q Consensus 191 l~~~~~dp~----~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivAt~l~~ 243 (248)
+.+...||. -....|...|..||-.... +...-.|++|...||+|+++..-+
T Consensus 18 vgD~~sDP~LM~~LgA~~~~~lgn~f~ey~v~-dpPr~VLnKLE~~G~rVvsmtGvg 73 (83)
T 1jg5_A 18 VGDEHSDPELMQQLGASKRRVLGNNFYEYYVN-DPPRIVLDKLECRGFRVLSMTGVG 73 (83)
T ss_dssp EECTTSCHHHHHHTTCEEECCTTCSSCEEEES-SCHHHHHHHHHHTTCEEEEEEEET
T ss_pred ccCccCCHHHHHHhccceehhhccccEEEEcC-CChHHHHHHHhccCeEEEEEecCC
Confidence 334455552 2345667778878877654 577789999999999999987544
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=46.12 E-value=56 Score=27.09 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=30.2
Q ss_pred hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCC
Q 025787 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD 195 (248)
Q Consensus 149 ~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~ 195 (248)
.+++.+++.+..++++.+.=.|+...-..++.+..-|+++|++.+..
T Consensus 25 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 25 GFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp HHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34444443333444434555677777788888888889988887643
No 19
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=33.32 E-value=1.3e+02 Score=24.50 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred HHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCC
Q 025787 150 FVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC 194 (248)
Q Consensus 150 l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~ 194 (248)
+++.+++.+. -+++.+.=.|+...-..++....-++++|++.+.
T Consensus 30 i~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 30 FKAEAKANKY-EALVATSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp HHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 4444443333 3344454456666667778888888888888654
No 20
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=31.98 E-value=1.7e+02 Score=23.80 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=25.7
Q ss_pred hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCC
Q 025787 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSC 194 (248)
Q Consensus 149 ~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~ 194 (248)
.+++.+++.+.. +++.+.=.|+...-..++....-|+++|++.+.
T Consensus 36 gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 36 GIESYLSEQGYS-MLLTSTNNNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp HHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred HHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHHCCCCEEEEecc
Confidence 344444433332 333344456666666777777778888877654
No 21
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=30.53 E-value=1.1e+02 Score=25.28 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=44.7
Q ss_pred hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHH
Q 025787 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNV 228 (248)
Q Consensus 149 ~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~ 228 (248)
.+++.+++.... +++++. .|+...-..++..-.-|+++|++.+... ......++.
T Consensus 23 gi~~~a~~~g~~-~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~-----------------------~~~~~~~~~ 77 (306)
T 8abp_A 23 FADKAGKDLGFE-VIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDP-----------------------KLGSAIVAK 77 (306)
T ss_dssp HHHHHHHHHTEE-EEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCG-----------------------GGHHHHHHH
T ss_pred HHHHHHHHcCCE-EEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCc-----------------------hhhHHHHHH
Confidence 344444433333 345555 6887778889999999999999976421 123356777
Q ss_pred HHHCCceEEEEe
Q 025787 229 LRSRGYRIATTH 240 (248)
Q Consensus 229 Lk~~G~~ivAt~ 240 (248)
+++.|+.++..+
T Consensus 78 ~~~~~iPvV~~~ 89 (306)
T 8abp_A 78 ARGYDMKVIAVD 89 (306)
T ss_dssp HHHTTCEEEEES
T ss_pred HHHCCCcEEEeC
Confidence 888888888776
No 22
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=29.22 E-value=59 Score=24.92 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=36.5
Q ss_pred CCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEE
Q 025787 168 LSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (248)
Q Consensus 168 I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivA 238 (248)
...|..+-.+++-|.+.|+.+||+..+.. -+++++.+++.|+++++
T Consensus 65 ~~p~~~v~~~v~e~~~~g~k~v~~~~G~~-------------------------~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 65 YINPQNQLSEYNYILSLKPKRVIFNPGTE-------------------------NEELEEILSENGIEPVI 110 (122)
T ss_dssp CSCHHHHGGGHHHHHHHCCSEEEECTTCC-------------------------CHHHHHHHHHTTCEEEE
T ss_pred EeCHHHHHHHHHHHHhcCCCEEEECCCCC-------------------------hHHHHHHHHHcCCeEEC
Confidence 46778888999999999999988765420 14788999999999885
No 23
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.79 E-value=1.2e+02 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=20.6
Q ss_pred CCCCCCcHHHHHHHHHHHCCCeEEEcCCC
Q 025787 167 GLSDFGNVSATFRSADALGVQSVHVVSCD 195 (248)
Q Consensus 167 ~I~DP~NlGAIiRSA~AfGv~~Vil~~~~ 195 (248)
+-.|+...-.+++.+..-++++|++.+..
T Consensus 51 ~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 79 (304)
T 3gbv_A 51 DPYDYNSFVATSQAVIEEQPDGVMFAPTV 79 (304)
T ss_dssp CSSCHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 44566666777788878888888887643
No 24
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=25.91 E-value=1.1e+02 Score=27.34 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=42.3
Q ss_pred hhhhhHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCC--CCCcccccccCCCc
Q 025787 145 ERKERFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSS--KRYRENRHVSMGAE 211 (248)
Q Consensus 145 ~R~~~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~d--p~~~k~~R~SmGA~ 211 (248)
++...|.++.+....++.++..+=-++.|+..|+. ..|++.+|.+....- +..-+...++||+.
T Consensus 194 ~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~---~tG~~~~H~S~~~~~~s~m~~r~~~v~mg~~ 259 (287)
T 3iwp_A 194 EGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILE---GSGATEFHCSARSTRDSGMKFRNSSVAMGAS 259 (287)
T ss_dssp TTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHH---HHCCSEEEECCEEEECCSCSSCCTTCCCSTT
T ss_pred HhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHH---hhCCCEEeECcCcccCCccccCCCccccCCC
Confidence 33345566555333457788888889999999975 479999999765321 11123456889985
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.46 E-value=2.3e+02 Score=21.31 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=41.6
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEE
Q 025787 163 LVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIA 237 (248)
Q Consensus 163 lVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~iv 237 (248)
+..+--..||=+..|++.-+..|+.=..+.... + +..-++-+ ++++.+.+.+.|+++||+++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-----------~-~~~~~~~i-~~~d~~~A~~~L~~~g~~v~ 136 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-----------N-NNVANVVI-RPSNMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-----------E-TTEEEEEE-EESCHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-----------c-CCcEEEEE-EeCCHHHHHHHHHHcCCEEe
Confidence 444555669999999999988898742332210 0 11123333 45899999999999999995
No 26
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=23.35 E-value=1.4e+02 Score=24.00 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=48.3
Q ss_pred hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCC--CCCCccccc-----ccCCC------ccceE
Q 025787 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDS--SKRYRENRH-----VSMGA------EKWLD 215 (248)
Q Consensus 149 ~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~--dp~~~k~~R-----~SmGA------~~~v~ 215 (248)
.+++.+++.+.. +++.+.=.|+...-.+++....-|+++|++.+... ++...+..+ +..|. ..++.
T Consensus 23 gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~ 101 (272)
T 3o74_A 23 QLEQGARARGYQ-LLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPAHFCSVI 101 (272)
T ss_dssp HHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTTTCEEEE
T ss_pred HHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCccccCEEE
Confidence 344444444333 34444445677777888888888999999876531 111111100 11111 12222
Q ss_pred EEEeCCHHHHHHHHHHCCceEEEEe
Q 025787 216 IELWDAPRECFNVLRSRGYRIATTH 240 (248)
Q Consensus 216 i~~~~~l~~~L~~Lk~~G~~ivAt~ 240 (248)
.-.......+.++|.++|++=++.-
T Consensus 102 ~d~~~~~~~a~~~L~~~G~~~i~~i 126 (272)
T 3o74_A 102 SDDRDASRQLAASLLSSAPRSIALI 126 (272)
T ss_dssp ECHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EchHHHHHHHHHHHHHCCCcEEEEE
Confidence 2222334557788889998666554
No 27
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.10 E-value=1.8e+02 Score=23.91 Aligned_cols=51 Identities=10% Similarity=-0.031 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEEEeeC
Q 025787 169 SDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIATTHVG 242 (248)
Q Consensus 169 ~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivAt~l~ 242 (248)
.|+...-..++.+..-|+++|++.+... ......++.+++.|+.++..+..
T Consensus 45 ~~~~~~~~~i~~l~~~~vdgiii~~~~~-----------------------~~~~~~~~~~~~~giPvV~~~~~ 95 (297)
T 3rot_A 45 NDVPKQVQFIESALATYPSGIATTIPSD-----------------------TAFSKSLQRANKLNIPVIAVDTR 95 (297)
T ss_dssp CCHHHHHHHHHHHHHTCCSEEEECCCCS-----------------------STTHHHHHHHHHHTCCEEEESCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCH-----------------------HHHHHHHHHHHHCCCCEEEEcCC
Confidence 3777777889999999999999865432 12235677777777777776543
No 28
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.43 E-value=1.8e+02 Score=24.03 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=26.0
Q ss_pred HHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCC
Q 025787 150 FVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCD 195 (248)
Q Consensus 150 l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~ 195 (248)
+++.+++.+. -+++.+.=.|+...-.+++.+..-++++|++.+..
T Consensus 24 i~~~a~~~g~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 24 FVKKAESLGA-KVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp HHHHHHHTSC-EEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHcCC-EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4444443332 23344444455556677777777788888877653
No 29
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=22.18 E-value=70 Score=29.07 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=35.8
Q ss_pred CcHHHHHH---HHHHHCCCeEEEcCCCCCC----CCc---ccccccCCCccceEEEEeCCHHHHHHHHHHCCceEEE
Q 025787 172 GNVSATFR---SADALGVQSVHVVSCDSSK----RYR---ENRHVSMGAEKWLDIELWDAPRECFNVLRSRGYRIAT 238 (248)
Q Consensus 172 ~NlGAIiR---SA~AfGv~~Vil~~~~~dp----~~~---k~~R~SmGA~~~v~i~~~~~l~~~L~~Lk~~G~~ivA 238 (248)
|++-.|+. --..+||++|++.+-...+ |.. ..+-...|+ .+++.+.+++++++|++|+.
T Consensus 20 Gd~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~~~GY~~~dy~~idp~~Gt--------~~df~~lv~~aH~~Gi~Vil 88 (441)
T 1lwj_A 20 GDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGS--------EREFKEMIEAFHDSGIKVVL 88 (441)
T ss_dssp CCHHHHHHTHHHHHHTTCCEEEECCCEECSSSSCCSCSEEEEECTTTCC--------HHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHhhHHHHHcCCCEEEeCCCcCCCCCCCCCcccccccCcccCC--------HHHHHHHHHHHHHCCCEEEE
Confidence 45555543 3356899999998743211 100 112222222 36788899999999999974
No 30
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=21.54 E-value=47 Score=23.65 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHCCceEEE
Q 025787 221 APRECFNVLRSRGYRIAT 238 (248)
Q Consensus 221 ~l~~~L~~Lk~~G~~ivA 238 (248)
++++.++.|.+.||.+.+
T Consensus 62 d~d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 62 PMDKIVRTLEANGYEVIG 79 (81)
T ss_dssp CHHHHHHHHHHTTCEEEC
T ss_pred CHHHHHHHHHHcCCEeeC
Confidence 677899999999999974
No 31
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.46 E-value=2.1e+02 Score=23.80 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=44.2
Q ss_pred hHHHHhhcCCCceEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEcCCCCCCCCcccccccCCCccceEEEEeCCHHHHHHH
Q 025787 149 RFVNVVKNRSYSVCLVVEGLSDFGNVSATFRSADALGVQSVHVVSCDSSKRYRENRHVSMGAEKWLDIELWDAPRECFNV 228 (248)
Q Consensus 149 ~l~evl~~r~~~lilVLD~I~DP~NlGAIiRSA~AfGv~~Vil~~~~~dp~~~k~~R~SmGA~~~v~i~~~~~l~~~L~~ 228 (248)
.+++.+++... .+++.+.=.|+...-..++...+-++++|++.+... ....+.++.
T Consensus 24 gi~~~a~~~g~-~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~-----------------------~~~~~~~~~ 79 (330)
T 3uug_A 24 NIVKQLQEAGY-KTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDG-----------------------TTLSDVLKQ 79 (330)
T ss_dssp HHHHHHHHTTC-EEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSG-----------------------GGGHHHHHH
T ss_pred HHHHHHHHcCC-EEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCc-----------------------hhHHHHHHH
Confidence 34455544333 344555556777777888999899999999876421 122356777
Q ss_pred HHHCCceEEEEee
Q 025787 229 LRSRGYRIATTHV 241 (248)
Q Consensus 229 Lk~~G~~ivAt~l 241 (248)
+++.|+.++..+.
T Consensus 80 ~~~~giPvV~~~~ 92 (330)
T 3uug_A 80 AGEQGIKVIAYDR 92 (330)
T ss_dssp HHHTTCEEEEESS
T ss_pred HHHCCCCEEEECC
Confidence 7777777776654
No 32
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=20.88 E-value=2e+02 Score=23.89 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHCCCeEEEcCC
Q 025787 169 SDFGNVSATFRSADALGVQSVHVVSC 194 (248)
Q Consensus 169 ~DP~NlGAIiRSA~AfGv~~Vil~~~ 194 (248)
.|+...-.+++....-++++|++.+.
T Consensus 41 ~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 41 EDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34444455666666677777777554
No 33
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=20.72 E-value=58 Score=28.83 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHCCCeEEEcCC
Q 025787 173 NVSATFRSADALGVQSVHVVSC 194 (248)
Q Consensus 173 NlGAIiRSA~AfGv~~Vil~~~ 194 (248)
=+|-|.|.|+.|+|+.|++.+.
T Consensus 27 ~~gqIARAaaIF~VdEIvVy~d 48 (268)
T 1k3r_A 27 KVVLIARAASIFGVKRIVIYHD 48 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHhccccEEEEEeC
Confidence 3799999999999999999754
Done!