BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025788
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 60.1 bits (144), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151
+C VCL E E EE +P C H FH EC+ WL S++TCPLCR ++V
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 88 RLPTILFD-EELRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLC 146
+LP+ F+ ++ + C VC+ +FE ++ LL+V C H FH +C+ WL +N TCP+C
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPIC 66
Query: 147 RCSIVP 152
R P
Sbjct: 67 RADSGP 72
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKLYNPATA 162
C VCL +F+ ++EL P CKH FH +C+ WL CPLC ++ + +L P++
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPSSG 74
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 96 EELRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITK 155
EE +C VC ++ + E + Q+P C H+FH CI WL + +CP+CR S+
Sbjct: 9 EEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67
Query: 156 LYNP 159
NP
Sbjct: 68 ATNP 71
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 84 EIKDRLPTILFDEELRTRDSQCC--VCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNT 141
E D LP IL E+ + C +C E+ + ++P C H FH C+ WL +
Sbjct: 20 ESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSG 78
Query: 142 TCPLCRCSIVP 152
TCP+CRC P
Sbjct: 79 TCPVCRCMFPP 89
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150
+C +CL E E++ ++P C H+FH C+ WL +N CP+CR I
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKLYNP 159
T + +CC+C+ + + +L+ +P C H F +CI W + CP+CR + + P
Sbjct: 13 TDEEECCICM---DGRADLI-LP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67
Query: 160 ATA 162
++
Sbjct: 68 SSG 70
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 34.3 bits (77), Expect = 0.072, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147
C C E + ++ ++ C H FH C+ W+ N CPLC+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP----------I 153
QC +C E+ I+ L +C H F CI+ W+ CP+CR I I
Sbjct: 55 QCIIC-SEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNXI 110
Query: 154 TKLYNPATASVVTR 167
K+ N ++ V R
Sbjct: 111 NKMVNNLSSEVKER 124
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKLYNPATAS 163
QC +C E+ I+ L +C H F CI+ W+ CP+CR I +K Y+ +
Sbjct: 66 QCIIC-SEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIK--SKTYSLVLDN 119
Query: 164 VVTRLLQD 171
+ +++ +
Sbjct: 120 CINKMVNN 127
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP----------I 153
QC +C E+ I+ L +C H F CI+ W+ CP+CR I I
Sbjct: 55 QCIIC-SEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 110
Query: 154 TKLYNPATASVVTR 167
K+ N ++ V R
Sbjct: 111 NKMVNNLSSEVKER 124
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 124 CKHVFHVECIHYWLHSNTTCPLCR 147
C H F CI W+ N TCPLC+
Sbjct: 24 CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 124 CKHVFHVECIHYWLHSNTTCPL 145
C H FH CI WL + CPL
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|3CE7|A Chain A, Crystal Structure Of Toxoplasma Specific Mitochodrial Acyl
Carrier Protein, 59.M03510
Length = 107
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 59 PILPTSSNQATTYVHSTCEHIGWKGEIKDRLPTILFDEELRTRDSQCCVCLGEFEIKEEL 118
P++ T N T Y+ C+ KGE P+ EELRTR+ + CL E
Sbjct: 11 PVVDTDINAVTNYIVGMCQKFLQKGE--KVTPSSKL-EELRTREDRLWDCLDTVEF---- 63
Query: 119 LQVPSCKHVFHV 130
V + +F V
Sbjct: 64 --VLDVEEIFDV 73
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLC 146
S C +CL + + V C H+ H C L CPLC
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLC 146
+C +C F I + +P C H + CI +L T CP C
Sbjct: 24 RCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHSNTT-CPLCRCSI 150
+++ C H+ C+ W S+ CP CRC I
Sbjct: 351 VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 117 ELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147
L+ C HVF +C+ L + TCP CR
Sbjct: 33 RLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 105 CCVCL-GEFEIKE--ELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147
C +C+ G EI + L+ C HVF +C+ L + TCP CR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHSNTT-CPLCRCSI 150
+++ C H+ C+ W S+ CP CRC I
Sbjct: 39 VKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150
+++ C H+ C+ W S CP CRC I
Sbjct: 347 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150
+++ C H+ C+ W S CP CRC I
Sbjct: 347 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 126 HVFHVECIHYWLHSNTT--CPLCRCSIVPITKLYNPATA 162
H H C+ W+ S+ T C LC+ + TKL P++
Sbjct: 42 HFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPSSG 80
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150
+++ C H+ C+ W S CP CRC I
Sbjct: 345 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150
+++ C H+ C+ W S CP CRC I
Sbjct: 345 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 119 LQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150
+++ C H+ C+ W S CP CRC I
Sbjct: 40 VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 117 ELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147
L+ C HVF +C+ L + TCP CR
Sbjct: 25 RLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 117 ELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147
L+ C HVF +C+ L + TCP CR
Sbjct: 90 RLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,663,788
Number of Sequences: 62578
Number of extensions: 170522
Number of successful extensions: 397
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 42
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)