Query 025788
Match_columns 248
No_of_seqs 354 out of 2174
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 6.5E-20 1.4E-24 162.3 7.3 77 79-156 205-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 8.1E-16 1.8E-20 97.7 1.9 44 103-147 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.5 9.7E-15 2.1E-19 128.4 6.3 70 81-152 267-346 (491)
4 PHA02929 N1R/p28-like protein; 99.4 3.6E-13 7.8E-18 114.7 4.9 74 79-152 148-228 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 6.9E-13 1.5E-17 93.4 3.5 46 101-147 18-73 (73)
6 COG5540 RING-finger-containing 99.3 5.9E-13 1.3E-17 114.5 3.7 51 101-152 322-373 (374)
7 KOG0317 Predicted E3 ubiquitin 99.1 6.9E-11 1.5E-15 101.5 4.2 52 99-154 236-287 (293)
8 PF13920 zf-C3HC4_3: Zinc fing 99.1 6E-11 1.3E-15 77.3 2.7 46 102-151 2-48 (50)
9 cd00162 RING RING-finger (Real 99.0 2.8E-10 6E-15 71.4 3.8 44 104-150 1-45 (45)
10 PLN03208 E3 ubiquitin-protein 99.0 2.7E-10 5.8E-15 93.6 3.9 49 101-153 17-81 (193)
11 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.7E-10 5.9E-15 70.2 2.5 39 105-146 1-39 (39)
12 KOG0823 Predicted E3 ubiquitin 99.0 3.8E-10 8.1E-15 94.4 3.0 51 99-153 44-97 (230)
13 PHA02926 zinc finger-like prot 98.9 5.1E-10 1.1E-14 93.0 3.2 52 100-151 168-230 (242)
14 KOG0320 Predicted E3 ubiquitin 98.9 4.7E-10 1E-14 90.1 2.7 51 100-152 129-179 (187)
15 KOG0802 E3 ubiquitin ligase [P 98.9 6.2E-10 1.3E-14 106.4 2.8 52 100-152 289-342 (543)
16 PF12861 zf-Apc11: Anaphase-pr 98.9 1.1E-09 2.4E-14 78.2 3.4 51 101-151 20-82 (85)
17 PF14634 zf-RING_5: zinc-RING 98.9 2E-09 4.4E-14 68.1 3.1 44 104-148 1-44 (44)
18 PF15227 zf-C3HC4_4: zinc fing 98.8 3.7E-09 8E-14 66.2 2.6 38 105-146 1-42 (42)
19 PF00097 zf-C3HC4: Zinc finger 98.8 2.8E-09 6.1E-14 66.2 2.0 39 105-146 1-41 (41)
20 smart00504 Ubox Modified RING 98.8 6.5E-09 1.4E-13 70.6 3.8 46 103-152 2-47 (63)
21 smart00184 RING Ring finger. E 98.7 7.5E-09 1.6E-13 62.5 2.9 38 105-146 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 98.7 1E-08 2.3E-13 93.4 3.6 50 100-153 24-73 (397)
23 KOG0828 Predicted E3 ubiquitin 98.6 4.8E-08 1E-12 89.4 4.9 51 101-152 570-635 (636)
24 KOG1734 Predicted RING-contain 98.6 1.1E-08 2.4E-13 87.1 0.3 54 100-154 222-284 (328)
25 COG5194 APC11 Component of SCF 98.6 4.1E-08 8.8E-13 68.5 2.5 49 103-151 21-81 (88)
26 COG5574 PEX10 RING-finger-cont 98.5 6.2E-08 1.3E-12 82.5 2.3 50 100-153 213-264 (271)
27 KOG1493 Anaphase-promoting com 98.5 4.1E-08 8.8E-13 67.9 0.5 51 101-151 19-81 (84)
28 PF13445 zf-RING_UBOX: RING-ty 98.4 1.9E-07 4.2E-12 58.6 2.5 38 105-144 1-43 (43)
29 KOG2164 Predicted E3 ubiquitin 98.4 1.4E-07 3.1E-12 87.0 2.5 47 102-152 186-237 (513)
30 smart00744 RINGv The RING-vari 98.4 2.6E-07 5.5E-12 59.8 2.7 42 104-147 1-49 (49)
31 KOG0287 Postreplication repair 98.3 2.1E-07 4.5E-12 81.8 0.2 49 102-154 23-71 (442)
32 PF04564 U-box: U-box domain; 98.2 5.8E-07 1.3E-11 63.1 2.3 51 102-156 4-55 (73)
33 COG5219 Uncharacterized conser 98.2 3.2E-07 7E-12 89.6 1.1 52 100-151 1467-1523(1525)
34 COG5432 RAD18 RING-finger-cont 98.2 6.1E-07 1.3E-11 77.4 2.2 46 102-151 25-70 (391)
35 TIGR00570 cdk7 CDK-activating 98.2 1.2E-06 2.5E-11 77.3 3.7 50 102-152 3-55 (309)
36 KOG4265 Predicted E3 ubiquitin 98.2 1.1E-06 2.4E-11 78.0 3.2 53 100-156 288-341 (349)
37 PF11793 FANCL_C: FANCL C-term 98.1 5E-07 1.1E-11 62.9 0.2 50 102-151 2-66 (70)
38 KOG0311 Predicted E3 ubiquitin 98.1 4.7E-07 1E-11 80.1 -1.6 54 98-154 39-93 (381)
39 KOG2177 Predicted E3 ubiquitin 98.0 1.6E-06 3.5E-11 75.3 1.6 45 100-148 11-55 (386)
40 KOG4172 Predicted E3 ubiquitin 98.0 9.7E-07 2.1E-11 57.2 -0.0 48 102-153 7-56 (62)
41 KOG0827 Predicted E3 ubiquitin 98.0 2.1E-06 4.4E-11 76.8 1.6 49 102-150 4-55 (465)
42 KOG2930 SCF ubiquitin ligase, 98.0 3E-06 6.4E-11 62.2 2.2 48 102-150 46-107 (114)
43 KOG0804 Cytoplasmic Zn-finger 98.0 2.3E-06 5.1E-11 77.8 1.1 48 101-151 174-222 (493)
44 KOG1039 Predicted E3 ubiquitin 97.9 7.1E-06 1.5E-10 73.7 2.3 52 100-151 159-221 (344)
45 KOG0825 PHD Zn-finger protein 97.8 3.1E-06 6.6E-11 81.5 -0.6 52 102-154 123-174 (1134)
46 PF14835 zf-RING_6: zf-RING of 97.7 7.7E-06 1.7E-10 55.2 -0.1 45 102-151 7-51 (65)
47 KOG0824 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 68.8 1.7 49 101-153 6-55 (324)
48 KOG0978 E3 ubiquitin ligase in 97.5 2.3E-05 5.1E-10 75.7 0.6 47 103-153 644-691 (698)
49 KOG1785 Tyrosine kinase negati 97.5 3.1E-05 6.8E-10 69.7 0.8 46 104-153 371-418 (563)
50 KOG3970 Predicted E3 ubiquitin 97.4 9.1E-05 2E-09 61.9 2.8 58 101-160 49-114 (299)
51 KOG0801 Predicted E3 ubiquitin 97.4 4.1E-05 8.9E-10 60.9 0.5 39 91-130 165-204 (205)
52 KOG1645 RING-finger-containing 97.4 0.00012 2.5E-09 66.2 3.3 48 102-149 4-54 (463)
53 KOG4445 Uncharacterized conser 97.4 3.7E-05 8E-10 66.8 0.0 51 102-153 115-188 (368)
54 KOG2879 Predicted E3 ubiquitin 97.4 0.00092 2E-08 57.7 8.4 52 98-152 235-288 (298)
55 KOG4159 Predicted E3 ubiquitin 97.2 0.0002 4.3E-09 65.7 2.1 49 100-152 82-130 (398)
56 PF05883 Baculo_RING: Baculovi 97.1 0.00015 3.2E-09 56.3 0.7 44 101-145 25-74 (134)
57 KOG1941 Acetylcholine receptor 97.0 0.00016 3.4E-09 65.1 0.3 48 100-148 363-413 (518)
58 KOG0297 TNF receptor-associate 97.0 0.00034 7.3E-09 64.5 2.3 55 99-156 18-72 (391)
59 KOG1428 Inhibitor of type V ad 97.0 0.00042 9.2E-09 70.9 2.9 52 99-151 3483-3544(3738)
60 PF14570 zf-RING_4: RING/Ubox 97.0 0.00042 9.2E-09 44.2 1.7 45 105-150 1-47 (48)
61 KOG2660 Locus-specific chromos 96.9 0.00023 4.9E-09 62.8 0.2 50 101-153 14-63 (331)
62 PF11789 zf-Nse: Zinc-finger o 96.9 0.00046 1E-08 46.0 1.6 42 101-145 10-53 (57)
63 PF12906 RINGv: RING-variant d 96.8 0.00082 1.8E-08 42.9 1.7 40 105-146 1-47 (47)
64 PHA02862 5L protein; Provision 96.6 0.0012 2.7E-08 51.6 2.3 45 102-151 2-53 (156)
65 KOG3039 Uncharacterized conser 96.6 0.002 4.2E-08 54.8 3.3 52 103-154 222-273 (303)
66 PHA02825 LAP/PHD finger-like p 96.6 0.0018 4E-08 51.6 2.8 50 99-152 5-60 (162)
67 KOG0826 Predicted E3 ubiquitin 96.5 0.0069 1.5E-07 53.6 6.1 46 101-149 299-344 (357)
68 KOG4275 Predicted E3 ubiquitin 96.4 0.00052 1.1E-08 59.6 -1.1 45 102-154 300-345 (350)
69 COG5152 Uncharacterized conser 96.4 0.0013 2.8E-08 54.2 1.1 45 102-150 196-240 (259)
70 COG5222 Uncharacterized conser 96.4 0.0021 4.5E-08 56.1 2.3 47 103-152 275-323 (427)
71 PF10367 Vps39_2: Vacuolar sor 96.3 0.0014 3.1E-08 48.8 0.9 33 100-134 76-108 (109)
72 KOG1571 Predicted E3 ubiquitin 96.2 0.0016 3.5E-08 58.2 0.7 48 101-155 304-351 (355)
73 KOG4692 Predicted E3 ubiquitin 96.1 0.0034 7.4E-08 56.0 2.3 49 100-152 420-468 (489)
74 KOG1952 Transcription factor N 96.1 0.003 6.6E-08 62.0 2.1 51 99-149 188-245 (950)
75 KOG1814 Predicted E3 ubiquitin 96.0 0.0041 8.9E-08 56.5 2.5 47 101-148 183-237 (445)
76 KOG1002 Nucleotide excision re 96.0 0.0023 4.9E-08 59.9 0.6 50 100-153 534-588 (791)
77 PHA03096 p28-like protein; Pro 95.9 0.004 8.6E-08 54.9 1.6 46 103-148 179-231 (284)
78 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.015 3.3E-07 50.6 3.9 54 100-154 111-164 (260)
79 KOG1813 Predicted E3 ubiquitin 95.5 0.0059 1.3E-07 53.3 1.3 46 102-151 241-286 (313)
80 COG5236 Uncharacterized conser 95.4 0.015 3.2E-07 52.0 3.3 49 98-150 57-107 (493)
81 KOG4739 Uncharacterized protei 95.3 0.0057 1.2E-07 52.0 0.5 44 104-151 5-48 (233)
82 COG5175 MOT2 Transcriptional r 95.2 0.011 2.3E-07 52.7 1.9 56 100-156 12-69 (480)
83 KOG0827 Predicted E3 ubiquitin 95.1 0.0016 3.5E-08 58.7 -3.6 48 103-151 197-245 (465)
84 PF14447 Prok-RING_4: Prokaryo 95.0 0.013 2.8E-07 38.4 1.5 46 102-153 7-52 (55)
85 PF08746 zf-RING-like: RING-li 94.8 0.014 3E-07 36.5 1.1 41 105-146 1-43 (43)
86 KOG4185 Predicted E3 ubiquitin 94.7 0.019 4.1E-07 50.8 2.2 47 103-150 4-54 (296)
87 KOG3268 Predicted E3 ubiquitin 94.6 0.02 4.4E-07 46.5 1.9 29 123-151 189-228 (234)
88 KOG2114 Vacuolar assembly/sort 94.3 0.016 3.4E-07 57.2 0.8 40 103-148 841-880 (933)
89 KOG2932 E3 ubiquitin ligase in 93.9 0.021 4.6E-07 50.2 0.7 43 104-151 92-134 (389)
90 PF14446 Prok-RING_1: Prokaryo 93.8 0.089 1.9E-06 34.4 3.3 35 101-135 4-38 (54)
91 KOG1940 Zn-finger protein [Gen 92.9 0.056 1.2E-06 47.3 1.7 49 102-152 158-207 (276)
92 PF10272 Tmpp129: Putative tra 92.6 0.08 1.7E-06 48.1 2.3 28 124-151 311-351 (358)
93 KOG1001 Helicase-like transcri 92.5 0.048 1E-06 53.7 0.9 47 103-154 455-503 (674)
94 KOG1100 Predicted E3 ubiquitin 92.5 0.05 1.1E-06 45.8 0.9 39 105-151 161-200 (207)
95 KOG2034 Vacuolar sorting prote 92.4 0.059 1.3E-06 53.6 1.3 36 100-137 815-850 (911)
96 COG5183 SSM4 Protein involved 91.6 0.12 2.7E-06 50.9 2.5 52 99-152 9-67 (1175)
97 KOG2817 Predicted E3 ubiquitin 91.4 0.15 3.2E-06 46.5 2.6 46 101-147 333-381 (394)
98 KOG0298 DEAD box-containing he 91.4 0.064 1.4E-06 55.3 0.3 44 103-149 1154-1197(1394)
99 PF03854 zf-P11: P-11 zinc fin 91.2 0.086 1.9E-06 33.4 0.7 30 123-152 17-47 (50)
100 KOG3053 Uncharacterized conser 91.2 0.081 1.8E-06 45.4 0.7 52 99-151 17-82 (293)
101 PF02439 Adeno_E3_CR2: Adenovi 90.9 0.62 1.3E-05 28.1 4.1 26 26-51 7-32 (38)
102 PF07800 DUF1644: Protein of u 90.6 0.28 6.1E-06 39.3 3.2 35 101-138 1-47 (162)
103 KOG3161 Predicted E3 ubiquitin 90.1 0.096 2.1E-06 50.4 0.3 43 103-148 12-54 (861)
104 KOG0309 Conserved WD40 repeat- 90.1 0.17 3.8E-06 49.6 1.9 23 123-145 1047-1069(1081)
105 KOG3800 Predicted E3 ubiquitin 89.5 0.27 5.8E-06 43.1 2.4 46 104-150 2-50 (300)
106 KOG1609 Protein involved in mR 89.2 0.18 3.9E-06 44.6 1.3 51 102-153 78-136 (323)
107 KOG0802 E3 ubiquitin ligase [P 88.8 0.28 6.1E-06 47.3 2.3 50 99-156 476-525 (543)
108 PF12273 RCR: Chitin synthesis 88.5 0.27 6E-06 38.1 1.7 12 39-50 12-23 (130)
109 PF05290 Baculo_IE-1: Baculovi 88.4 0.36 7.8E-06 37.5 2.2 53 101-153 79-134 (140)
110 PF01102 Glycophorin_A: Glycop 88.3 0.61 1.3E-05 35.9 3.5 14 24-37 66-79 (122)
111 KOG3002 Zn finger protein [Gen 87.1 0.44 9.6E-06 42.4 2.4 44 101-152 47-92 (299)
112 KOG3899 Uncharacterized conser 86.7 0.3 6.6E-06 42.8 1.1 29 124-152 325-366 (381)
113 PF15102 TMEM154: TMEM154 prot 85.7 0.16 3.6E-06 40.1 -0.9 33 19-51 53-85 (146)
114 KOG1812 Predicted E3 ubiquitin 83.8 0.42 9.1E-06 44.1 0.7 37 101-138 145-182 (384)
115 PF07975 C1_4: TFIIH C1-like d 83.4 0.92 2E-05 29.4 1.9 43 105-147 2-50 (51)
116 COG5220 TFB3 Cdk activating ki 83.1 0.41 8.9E-06 40.9 0.3 48 101-148 9-61 (314)
117 KOG4367 Predicted Zn-finger pr 82.8 0.55 1.2E-05 43.4 1.0 34 100-137 2-35 (699)
118 PF13901 DUF4206: Domain of un 81.9 1.1 2.5E-05 37.5 2.5 41 101-147 151-196 (202)
119 PF01102 Glycophorin_A: Glycop 81.7 1.6 3.5E-05 33.6 3.0 26 26-51 65-90 (122)
120 KOG1812 Predicted E3 ubiquitin 80.5 0.73 1.6E-05 42.5 1.0 66 81-146 280-351 (384)
121 PF02009 Rifin_STEVOR: Rifin/s 79.9 2.2 4.7E-05 38.0 3.7 14 26-39 257-270 (299)
122 KOG2066 Vacuolar assembly/sort 79.9 0.51 1.1E-05 46.6 -0.3 45 101-147 783-831 (846)
123 KOG0825 PHD Zn-finger protein 79.4 0.91 2E-05 45.0 1.2 51 103-153 97-156 (1134)
124 PF02891 zf-MIZ: MIZ/SP-RING z 78.6 0.82 1.8E-05 29.4 0.5 43 103-149 3-50 (50)
125 KOG0269 WD40 repeat-containing 78.3 2 4.4E-05 42.4 3.2 41 103-145 780-820 (839)
126 PF06667 PspB: Phage shock pro 78.1 6.2 0.00013 27.7 4.8 19 33-51 11-29 (75)
127 smart00132 LIM Zinc-binding do 78.0 1.7 3.8E-05 25.3 1.8 36 105-150 2-37 (39)
128 PF08693 SKG6: Transmembrane a 77.6 0.6 1.3E-05 28.6 -0.4 20 30-49 18-37 (40)
129 PTZ00046 rifin; Provisional 77.4 3.5 7.6E-05 37.5 4.3 30 23-52 313-342 (358)
130 KOG4718 Non-SMC (structural ma 77.3 1.1 2.5E-05 37.5 1.0 42 103-147 182-223 (235)
131 KOG4362 Transcriptional regula 76.1 0.69 1.5E-05 45.3 -0.6 46 101-150 20-68 (684)
132 TIGR01477 RIFIN variant surfac 75.9 4 8.6E-05 37.1 4.2 29 24-52 309-337 (353)
133 KOG3113 Uncharacterized conser 75.4 3 6.5E-05 36.0 3.1 53 102-156 111-163 (293)
134 PF15050 SCIMP: SCIMP protein 74.5 5.8 0.00013 30.3 4.1 13 22-34 7-19 (133)
135 PRK09458 pspB phage shock prot 74.4 7.8 0.00017 27.1 4.4 24 30-53 8-31 (75)
136 smart00249 PHD PHD zinc finger 74.0 2.5 5.5E-05 25.5 1.8 31 104-135 1-31 (47)
137 TIGR01478 STEVOR variant surfa 73.8 3.2 7E-05 36.4 3.0 20 33-52 267-286 (295)
138 PF06906 DUF1272: Protein of u 73.7 4 8.7E-05 26.8 2.7 46 103-152 6-53 (57)
139 KOG3005 GIY-YIG type nuclease 73.3 1.9 4.2E-05 37.4 1.5 48 103-150 183-242 (276)
140 PF02009 Rifin_STEVOR: Rifin/s 72.9 6.1 0.00013 35.2 4.6 27 22-49 257-283 (299)
141 PF06716 DUF1201: Protein of u 71.4 13 0.00028 23.5 4.4 30 21-50 5-34 (54)
142 PF10571 UPF0547: Uncharacteri 71.0 2.4 5.2E-05 23.4 1.0 23 104-128 2-24 (26)
143 PF01034 Syndecan: Syndecan do 70.6 1.4 3E-05 29.8 0.0 24 25-48 12-35 (64)
144 TIGR00622 ssl1 transcription f 70.0 5.5 0.00012 30.1 3.1 46 102-147 55-110 (112)
145 PTZ00382 Variant-specific surf 69.9 1.1 2.4E-05 33.0 -0.6 12 38-49 82-93 (96)
146 KOG3842 Adaptor protein Pellin 68.9 4.7 0.0001 36.0 2.9 53 100-153 339-416 (429)
147 KOG1815 Predicted E3 ubiquitin 68.7 2.7 5.8E-05 39.5 1.5 36 100-138 68-103 (444)
148 PF06679 DUF1180: Protein of u 67.8 6.4 0.00014 31.9 3.3 7 25-31 96-102 (163)
149 PF15339 Afaf: Acrosome format 67.7 12 0.00026 30.5 4.7 39 15-53 124-162 (200)
150 COG5109 Uncharacterized conser 67.5 3.5 7.7E-05 36.7 1.9 45 102-147 336-383 (396)
151 KOG1829 Uncharacterized conser 67.2 1.7 3.8E-05 42.0 -0.1 43 101-147 510-557 (580)
152 TIGR02976 phageshock_pspB phag 66.4 15 0.00033 25.7 4.6 12 38-49 16-27 (75)
153 PF13719 zinc_ribbon_5: zinc-r 65.4 4.1 8.8E-05 24.3 1.3 26 104-129 4-36 (37)
154 KOG2068 MOT2 transcription fac 64.1 4.8 0.0001 36.1 2.1 47 103-150 250-297 (327)
155 PF00412 LIM: LIM domain; Int 63.9 3.4 7.5E-05 26.6 0.9 40 105-154 1-40 (58)
156 PF05454 DAG1: Dystroglycan (D 63.2 2.4 5.2E-05 37.6 0.0 9 88-96 190-198 (290)
157 KOG0824 Predicted E3 ubiquitin 63.1 2.4 5.2E-05 37.5 -0.0 52 98-152 101-152 (324)
158 PF00628 PHD: PHD-finger; Int 62.5 3.9 8.5E-05 25.8 0.9 43 104-147 1-49 (51)
159 PF04710 Pellino: Pellino; In 62.3 2.5 5.5E-05 38.8 0.0 50 102-152 328-402 (416)
160 PF06024 DUF912: Nucleopolyhed 60.9 4.2 9.1E-05 30.1 1.0 10 25-34 65-74 (101)
161 PF06844 DUF1244: Protein of u 60.0 5.5 0.00012 27.1 1.3 12 127-138 11-22 (68)
162 PHA03099 epidermal growth fact 59.8 11 0.00025 29.1 3.1 22 26-47 102-123 (139)
163 PF01363 FYVE: FYVE zinc finge 58.5 4.1 8.8E-05 27.5 0.5 37 101-137 8-44 (69)
164 KOG2807 RNA polymerase II tran 58.4 7.8 0.00017 34.8 2.3 47 101-148 329-375 (378)
165 PF14569 zf-UDP: Zinc-binding 57.8 14 0.00029 26.1 3.0 52 101-152 8-63 (80)
166 PF15179 Myc_target_1: Myc tar 57.5 19 0.00041 29.6 4.2 17 22-38 20-36 (197)
167 KOG3579 Predicted E3 ubiquitin 57.1 4.7 0.0001 35.5 0.7 34 102-139 268-305 (352)
168 PF02480 Herpes_gE: Alphaherpe 54.6 4.1 8.9E-05 38.3 0.0 26 26-51 356-381 (439)
169 PF04478 Mid2: Mid2 like cell 54.4 2 4.3E-05 34.3 -1.8 11 26-36 53-63 (154)
170 KOG3039 Uncharacterized conser 54.3 8.9 0.00019 33.1 2.0 34 101-138 42-75 (303)
171 KOG3653 Transforming growth fa 53.5 27 0.00059 33.2 5.1 12 129-140 291-302 (534)
172 PTZ00046 rifin; Provisional 53.0 22 0.00048 32.4 4.4 31 21-51 315-345 (358)
173 TIGR01477 RIFIN variant surfac 52.7 23 0.00049 32.3 4.4 31 21-51 310-340 (353)
174 PF01708 Gemini_mov: Geminivir 52.5 6 0.00013 28.6 0.6 33 15-47 26-58 (91)
175 PLN02189 cellulose synthase 51.5 15 0.00033 38.0 3.4 50 102-151 34-87 (1040)
176 cd00065 FYVE FYVE domain; Zinc 51.1 12 0.00027 24.0 1.9 35 103-137 3-37 (57)
177 PF14851 FAM176: FAM176 family 51.1 28 0.0006 27.9 4.2 26 23-48 22-47 (153)
178 PF05399 EVI2A: Ectropic viral 50.8 27 0.00059 29.4 4.2 23 22-44 127-149 (227)
179 PF11044 TMEMspv1-c74-12: Plec 50.2 30 0.00065 21.6 3.3 20 23-42 3-22 (49)
180 PF14316 DUF4381: Domain of un 49.9 26 0.00057 27.5 4.0 7 14-20 16-22 (146)
181 COG4736 CcoQ Cbb3-type cytochr 49.2 46 0.001 22.2 4.4 25 24-48 6-30 (60)
182 PF06084 Cytomega_TRL10: Cytom 48.4 9.3 0.0002 29.0 1.0 31 22-52 55-85 (150)
183 PF10577 UPF0560: Uncharacteri 48.2 29 0.00064 34.9 4.7 11 41-51 290-300 (807)
184 PF07010 Endomucin: Endomucin; 48.1 50 0.0011 28.2 5.4 26 24-49 191-216 (259)
185 PHA02902 putative IMV membrane 48.1 33 0.00071 23.2 3.5 15 37-51 14-28 (70)
186 PTZ00370 STEVOR; Provisional 48.1 25 0.00054 31.1 3.8 24 27-50 260-283 (296)
187 PF07204 Orthoreo_P10: Orthore 48.0 15 0.00032 26.9 2.0 11 24-34 42-52 (98)
188 smart00064 FYVE Protein presen 47.9 15 0.00033 24.5 2.0 36 102-137 10-45 (68)
189 PF10717 ODV-E18: Occlusion-de 47.7 28 0.00062 24.8 3.3 11 16-26 19-29 (85)
190 PF11669 WBP-1: WW domain-bind 47.6 72 0.0016 23.6 5.7 10 40-49 38-47 (102)
191 PF09125 COX2-transmemb: Cytoc 46.6 56 0.0012 19.5 3.9 16 23-38 15-30 (38)
192 PF14914 LRRC37AB_C: LRRC37A/B 46.2 35 0.00076 27.1 4.0 15 17-31 115-129 (154)
193 PF12877 DUF3827: Domain of un 46.1 9.8 0.00021 37.2 1.1 30 21-50 267-296 (684)
194 PF04710 Pellino: Pellino; In 45.9 6.8 0.00015 36.1 0.0 46 100-149 275-337 (416)
195 PF02480 Herpes_gE: Alphaherpe 45.7 6.9 0.00015 36.8 0.0 40 18-57 345-384 (439)
196 PF11770 GAPT: GRB2-binding ad 45.6 12 0.00025 29.8 1.3 26 27-52 12-37 (158)
197 PF14654 Epiglycanin_C: Mucin, 45.4 31 0.00067 25.4 3.3 30 21-50 15-44 (106)
198 TIGR00847 ccoS cytochrome oxid 45.3 52 0.0011 21.3 4.0 12 42-53 19-30 (51)
199 PF06143 Baculo_11_kDa: Baculo 44.9 56 0.0012 23.4 4.5 6 27-32 39-44 (84)
200 PF05961 Chordopox_A13L: Chord 44.0 52 0.0011 22.5 4.0 17 38-54 14-30 (68)
201 PF15145 DUF4577: Domain of un 43.9 36 0.00077 25.7 3.5 8 9-16 36-43 (128)
202 KOG2052 Activin A type IB rece 43.6 37 0.00079 32.1 4.3 29 24-52 133-161 (513)
203 PF06305 DUF1049: Protein of u 43.5 42 0.0009 22.3 3.7 19 19-37 18-36 (68)
204 PF15202 Adipogenin: Adipogeni 43.0 70 0.0015 21.9 4.5 28 24-51 16-43 (81)
205 PF07649 C1_3: C1-like domain; 42.8 23 0.00049 19.8 1.9 29 104-133 2-30 (30)
206 smart00647 IBR In Between Ring 42.6 7.7 0.00017 25.4 -0.1 20 117-136 39-58 (64)
207 PF07191 zinc-ribbons_6: zinc- 41.9 9.8 0.00021 26.3 0.3 40 103-151 2-41 (70)
208 KOG4482 Sarcoglycan complex, a 41.8 36 0.00077 31.3 3.9 29 26-54 298-326 (449)
209 PF14991 MLANA: Protein melan- 41.6 4.4 9.4E-05 30.7 -1.6 10 45-54 44-53 (118)
210 PF04971 Lysis_S: Lysis protei 41.3 33 0.00071 23.5 2.7 15 24-38 33-47 (68)
211 COG3813 Uncharacterized protei 41.2 23 0.00051 24.6 2.0 45 105-152 8-53 (84)
212 PF08999 SP_C-Propep: Surfacta 41.0 68 0.0015 22.8 4.4 12 20-31 32-43 (93)
213 TIGR01195 oadG_fam sodium pump 40.8 65 0.0014 22.8 4.4 13 27-39 11-23 (82)
214 KOG1729 FYVE finger containing 40.6 5 0.00011 35.5 -1.6 36 103-139 215-250 (288)
215 KOG2231 Predicted E3 ubiquitin 40.6 20 0.00043 35.4 2.3 44 104-151 2-52 (669)
216 PRK01844 hypothetical protein; 40.5 70 0.0015 22.2 4.3 7 81-87 39-45 (72)
217 COG1622 CyoA Heme/copper-type 40.5 55 0.0012 28.3 4.8 6 133-138 216-221 (247)
218 KOG2041 WD40 repeat protein [G 39.9 24 0.00052 35.2 2.7 46 101-150 1130-1184(1189)
219 PRK00523 hypothetical protein; 39.5 47 0.001 23.1 3.3 7 81-87 40-46 (72)
220 PRK05978 hypothetical protein; 39.3 23 0.0005 28.2 2.1 28 126-158 43-70 (148)
221 PF06697 DUF1191: Protein of u 38.8 15 0.00032 32.4 1.0 16 10-25 199-214 (278)
222 PLN02436 cellulose synthase A 38.4 32 0.00069 35.9 3.4 50 102-151 36-89 (1094)
223 PF12768 Rax2: Cortical protei 38.3 69 0.0015 28.2 5.2 28 27-54 234-261 (281)
224 PHA02650 hypothetical protein; 38.2 51 0.0011 23.3 3.4 26 25-50 47-72 (81)
225 PF10497 zf-4CXXC_R1: Zinc-fin 38.1 40 0.00087 25.1 3.1 24 125-148 37-69 (105)
226 PF04423 Rad50_zn_hook: Rad50 37.2 9.8 0.00021 24.5 -0.3 12 142-153 22-33 (54)
227 PHA02681 ORF089 virion membran 36.8 1.5E+02 0.0032 21.2 5.5 15 79-93 50-64 (92)
228 PF06937 EURL: EURL protein; 36.8 29 0.00063 30.3 2.4 44 103-146 31-76 (285)
229 PF15048 OSTbeta: Organic solu 36.6 52 0.0011 25.4 3.5 29 24-52 35-63 (125)
230 PHA03054 IMV membrane protein; 36.6 66 0.0014 22.2 3.7 14 31-44 55-68 (72)
231 PF04216 FdhE: Protein involve 36.3 4.4 9.5E-05 35.8 -2.7 45 102-148 172-219 (290)
232 KOG4185 Predicted E3 ubiquitin 36.0 6.4 0.00014 34.6 -1.8 48 102-149 207-265 (296)
233 PHA02819 hypothetical protein; 35.6 63 0.0014 22.3 3.4 20 29-48 48-67 (71)
234 PF13717 zinc_ribbon_4: zinc-r 35.3 21 0.00045 21.1 1.0 26 104-129 4-36 (36)
235 PHA03255 BDLF3; Provisional 35.2 87 0.0019 25.6 4.7 27 19-45 180-206 (234)
236 PHA03030 hypothetical protein; 35.1 34 0.00073 25.4 2.2 8 42-49 15-22 (122)
237 PTZ00208 65 kDa invariant surf 34.9 38 0.00081 31.4 2.9 11 41-51 404-414 (436)
238 COG3630 OadG Na+-transporting 34.8 79 0.0017 22.6 4.0 23 24-46 11-33 (84)
239 KOG4430 Topoisomerase I-bindin 34.7 28 0.0006 33.6 2.2 54 101-154 259-312 (553)
240 PLN02248 cellulose synthase-li 34.4 41 0.0009 35.2 3.5 51 102-152 124-178 (1135)
241 PRK03814 oxaloacetate decarbox 33.9 96 0.0021 22.2 4.4 20 25-44 13-32 (85)
242 PHA03049 IMV membrane protein; 33.7 95 0.0021 21.2 4.0 16 38-53 14-29 (68)
243 PLN02638 cellulose synthase A 33.5 44 0.00095 34.9 3.5 50 102-151 17-70 (1079)
244 PHA02975 hypothetical protein; 33.3 72 0.0016 21.9 3.4 18 31-48 48-65 (69)
245 PHA02844 putative transmembran 32.9 78 0.0017 22.1 3.6 21 29-49 50-70 (75)
246 KOG2071 mRNA cleavage and poly 32.8 23 0.00049 34.3 1.3 36 100-136 511-556 (579)
247 KOG4577 Transcription factor L 32.8 10 0.00023 33.4 -0.9 43 102-154 92-134 (383)
248 PF13240 zinc_ribbon_2: zinc-r 32.7 7.6 0.00016 20.7 -1.1 6 142-147 15-20 (23)
249 PF12575 DUF3753: Protein of u 32.5 65 0.0014 22.4 3.2 20 29-48 50-69 (72)
250 PF08374 Protocadherin: Protoc 32.3 14 0.0003 31.2 -0.2 8 187-194 180-187 (221)
251 PF07406 NICE-3: NICE-3 protei 32.3 55 0.0012 27.1 3.3 18 128-145 124-143 (186)
252 PRK14710 hypothetical protein; 31.8 46 0.00099 23.0 2.3 17 27-43 12-28 (86)
253 cd00350 rubredoxin_like Rubred 31.7 23 0.00051 20.3 0.8 19 124-148 7-25 (33)
254 PF07423 DUF1510: Protein of u 31.7 44 0.00095 28.4 2.7 15 21-35 13-27 (217)
255 COG3492 Uncharacterized protei 31.6 20 0.00044 26.0 0.6 12 127-138 42-53 (104)
256 PF14584 DUF4446: Protein of u 31.5 48 0.001 26.5 2.8 23 91-113 85-108 (151)
257 PF13832 zf-HC5HC2H_2: PHD-zin 31.1 30 0.00066 25.5 1.5 32 101-135 54-87 (110)
258 COG4847 Uncharacterized protei 30.9 42 0.00092 24.6 2.1 35 102-138 6-40 (103)
259 PF15099 PIRT: Phosphoinositid 30.6 33 0.00072 26.5 1.6 32 21-52 80-111 (129)
260 PF13120 DUF3974: Domain of un 30.5 73 0.0016 23.4 3.3 25 26-50 6-30 (126)
261 PF10083 DUF2321: Uncharacteri 30.4 22 0.00047 28.5 0.6 45 106-153 8-52 (158)
262 PF03229 Alpha_GJ: Alphavirus 30.0 91 0.002 23.8 3.8 19 25-43 87-105 (126)
263 PF13771 zf-HC5HC2H: PHD-like 29.9 33 0.00071 24.2 1.5 34 101-135 35-68 (90)
264 PLN02195 cellulose synthase A 29.7 65 0.0014 33.4 3.9 51 101-151 5-59 (977)
265 PF08374 Protocadherin: Protoc 29.6 21 0.00045 30.2 0.4 8 25-32 41-48 (221)
266 PF02318 FYVE_2: FYVE-type zin 29.4 28 0.0006 26.4 1.0 46 101-148 53-102 (118)
267 PHA02692 hypothetical protein; 29.0 98 0.0021 21.3 3.5 14 31-44 53-66 (70)
268 PF09943 DUF2175: Uncharacteri 28.6 47 0.001 24.7 2.1 34 103-138 3-36 (101)
269 PF04995 CcmD: Heme exporter p 28.4 1.5E+02 0.0033 18.3 4.2 18 22-39 6-23 (46)
270 PF15298 AJAP1_PANP_C: AJAP1/P 28.3 19 0.00042 29.9 0.0 34 19-52 96-129 (205)
271 PLN02915 cellulose synthase A 28.3 58 0.0013 34.0 3.3 51 101-151 14-68 (1044)
272 PRK03564 formate dehydrogenase 28.2 25 0.00055 31.5 0.7 46 101-148 186-234 (309)
273 KOG1356 Putative transcription 28.1 24 0.00051 35.7 0.6 47 101-149 228-280 (889)
274 PF02158 Neuregulin: Neureguli 27.9 19 0.00041 33.0 -0.1 35 20-54 6-41 (404)
275 PF06667 PspB: Phage shock pro 27.8 1.7E+02 0.0037 20.5 4.7 28 25-52 6-33 (75)
276 PF15102 TMEM154: TMEM154 prot 27.4 23 0.0005 28.1 0.3 9 130-138 127-135 (146)
277 PHA03099 epidermal growth fact 27.3 59 0.0013 25.3 2.5 29 24-52 103-131 (139)
278 PRK11088 rrmA 23S rRNA methylt 27.1 44 0.00094 28.9 2.0 25 103-128 3-27 (272)
279 PHA02662 ORF131 putative membr 27.1 91 0.002 26.5 3.8 31 24-54 187-217 (226)
280 PF12955 DUF3844: Domain of un 27.0 96 0.0021 23.1 3.5 24 17-40 62-85 (103)
281 PF15345 TMEM51: Transmembrane 27.0 14 0.00031 31.5 -1.0 35 19-53 53-87 (233)
282 smart00531 TFIIE Transcription 27.0 54 0.0012 25.8 2.4 14 140-153 123-136 (147)
283 KOG1815 Predicted E3 ubiquitin 26.8 19 0.00041 33.8 -0.3 37 103-139 227-267 (444)
284 PLN02400 cellulose synthase 26.7 48 0.0011 34.7 2.5 50 102-151 36-89 (1085)
285 PRK09174 F0F1 ATP synthase sub 26.7 1.3E+02 0.0028 25.2 4.7 6 25-30 55-60 (204)
286 PF05510 Sarcoglycan_2: Sarcog 26.7 1.1E+02 0.0024 28.4 4.5 25 28-52 288-312 (386)
287 PF03554 Herpes_UL73: UL73 vir 26.3 1E+02 0.0022 22.0 3.4 32 17-48 41-72 (82)
288 PRK11901 hypothetical protein; 26.0 71 0.0015 28.8 3.1 18 26-43 37-54 (327)
289 PF07219 HemY_N: HemY protein 25.9 94 0.002 22.9 3.4 17 17-33 10-26 (108)
290 PF03579 SHP: Small hydrophobi 25.8 1.1E+02 0.0023 20.4 3.1 16 19-34 10-25 (64)
291 PRK02919 oxaloacetate decarbox 25.6 1.3E+02 0.0029 21.3 3.9 14 28-41 15-28 (82)
292 KOG3839 Lectin VIP36, involved 25.4 26 0.00057 31.6 0.3 41 9-49 300-340 (351)
293 COG2268 Uncharacterized protei 24.9 88 0.0019 30.3 3.7 8 106-113 95-102 (548)
294 PF06422 PDR_CDR: CDR ABC tran 24.9 1.2E+02 0.0025 22.4 3.7 27 23-49 48-74 (103)
295 PF07856 Orai-1: Mediator of C 24.6 66 0.0014 26.3 2.5 30 19-48 106-135 (175)
296 PF15183 MRAP: Melanocortin-2 24.6 90 0.0019 22.4 2.8 10 26-35 41-50 (90)
297 PF14311 DUF4379: Domain of un 24.6 41 0.0009 21.6 1.1 23 123-146 33-55 (55)
298 COG1545 Predicted nucleic-acid 24.5 46 0.00099 26.1 1.5 20 123-150 34-53 (140)
299 KOG4323 Polycomb-like PHD Zn-f 24.5 49 0.0011 31.3 1.9 48 102-149 168-224 (464)
300 KOG3799 Rab3 effector RIM1 and 24.3 39 0.00085 26.4 1.0 12 100-111 63-74 (169)
301 TIGR00686 phnA alkylphosphonat 24.1 51 0.0011 24.7 1.6 23 104-126 4-27 (109)
302 KOG3352 Cytochrome c oxidase, 23.7 38 0.00082 27.0 0.9 9 141-149 134-142 (153)
303 PF09723 Zn-ribbon_8: Zinc rib 23.5 15 0.00032 22.5 -1.2 25 123-148 10-34 (42)
304 PHA02673 ORF109 EEV glycoprote 23.5 1.6E+02 0.0034 23.7 4.3 8 136-143 95-102 (161)
305 TIGR03141 cytochro_ccmD heme e 23.1 1.9E+02 0.0041 17.8 3.9 13 22-34 7-19 (45)
306 PF10389 CoatB: Bacteriophage 22.8 1.6E+02 0.0034 18.6 3.4 20 30-49 24-43 (46)
307 PF06750 DiS_P_DiS: Bacterial 22.7 87 0.0019 22.7 2.6 38 102-152 33-70 (92)
308 PF05337 CSF-1: Macrophage col 22.6 29 0.00062 30.5 0.0 9 44-52 245-253 (285)
309 KOG0956 PHD finger protein AF1 22.6 34 0.00074 33.9 0.5 49 102-151 117-182 (900)
310 PF11014 DUF2852: Protein of u 22.4 1.7E+02 0.0037 22.2 4.2 22 25-46 13-34 (115)
311 COG3763 Uncharacterized protei 22.3 2.7E+02 0.0058 19.3 4.7 7 81-87 39-45 (71)
312 KOG4218 Nuclear hormone recept 22.2 73 0.0016 29.0 2.4 48 101-149 14-76 (475)
313 PF13061 DUF3923: Protein of u 22.0 2.4E+02 0.0051 19.2 4.4 28 17-44 34-61 (66)
314 TIGR01562 FdhE formate dehydro 21.8 24 0.00053 31.5 -0.6 41 102-148 184-232 (305)
315 PF14205 Cys_rich_KTR: Cystein 21.6 61 0.0013 21.2 1.4 9 142-150 30-38 (55)
316 PF06676 DUF1178: Protein of u 21.6 35 0.00076 27.2 0.3 22 124-150 10-42 (148)
317 PRK09174 F0F1 ATP synthase sub 21.6 1.5E+02 0.0033 24.7 4.2 19 22-40 56-74 (204)
318 PF15069 FAM163: FAM163 family 21.5 1.7E+02 0.0036 23.2 4.0 8 140-147 91-98 (143)
319 PF15145 DUF4577: Domain of un 21.4 1.2E+02 0.0027 22.9 3.1 21 25-45 65-85 (128)
320 PF07234 DUF1426: Protein of u 21.4 1.9E+02 0.0041 21.4 4.0 18 25-42 15-32 (117)
321 PF03107 C1_2: C1 domain; Int 21.3 51 0.0011 18.4 0.9 28 104-132 2-29 (30)
322 COG1592 Rubrerythrin [Energy p 21.3 34 0.00073 27.8 0.2 8 141-148 150-157 (166)
323 PF07282 OrfB_Zn_ribbon: Putat 21.1 1E+02 0.0022 20.5 2.6 35 102-136 28-64 (69)
324 PF15176 LRR19-TM: Leucine-ric 21.1 1.1E+02 0.0024 22.7 2.8 19 23-41 19-37 (102)
325 KOG1538 Uncharacterized conser 21.0 45 0.00098 33.1 1.0 33 119-151 1045-1077(1081)
326 PRK10220 hypothetical protein; 20.9 77 0.0017 23.9 2.0 10 104-113 5-14 (111)
327 PF06143 Baculo_11_kDa: Baculo 20.6 2.3E+02 0.0051 20.3 4.3 22 23-44 32-53 (84)
328 KOG2113 Predicted RNA binding 20.6 81 0.0018 28.4 2.4 41 103-149 344-385 (394)
329 TIGR02976 phageshock_pspB phag 20.6 2.4E+02 0.0052 19.7 4.3 18 33-50 14-31 (75)
330 KOG1245 Chromatin remodeling c 20.4 32 0.00068 37.2 -0.2 49 101-150 1107-1159(1404)
331 KOG2113 Predicted RNA binding 20.3 56 0.0012 29.3 1.3 47 102-152 136-184 (394)
332 TIGR01294 P_lamban phospholamb 20.0 2E+02 0.0044 18.0 3.4 6 25-30 33-38 (52)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=6.5e-20 Score=162.30 Aligned_cols=77 Identities=30% Similarity=0.665 Sum_probs=65.4
Q ss_pred CCCCHHHHhhCCceeeccccCCCC-CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC-CCCccccCccccCCCC
Q 025788 79 IGWKGEIKDRLPTILFDEELRTRD-SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN-TTCPLCRCSIVPITKL 156 (248)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~-~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~~~ 156 (248)
.++.+..++++|...|.....+.. ..|+||||+|.+|+++|.|| |+|.||..||++||... ..||+|++++......
T Consensus 205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS 283 (348)
T ss_pred hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence 678899999999999976544332 49999999999999999999 99999999999999765 5699999987665443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.57 E-value=8.1e-16 Score=97.73 Aligned_cols=44 Identities=50% Similarity=1.232 Sum_probs=40.3
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
++|+||+++|..++.++.++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999999 999999999999999899999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.7e-15 Score=128.43 Aligned_cols=70 Identities=27% Similarity=0.746 Sum_probs=54.8
Q ss_pred CCHHHHhhCCceeeccccCCCCCccccccccc-ccC---------CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 81 WKGEIKDRLPTILFDEELRTRDSQCCVCLGEF-EIK---------EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~~C~ICl~~~-~~~---------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
..++..+-+++...+ .+..+|..|.||++++ ..+ .+.++|| |||+||.+|+..|++++++||+||.++
T Consensus 267 ~~kdl~~~~~t~t~e-ql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 267 ATKDLNAMYPTATEE-QLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred HhhHHHhhcchhhhh-hhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 455666666766543 3466788999999995 333 2467898 999999999999999999999999995
Q ss_pred cc
Q 025788 151 VP 152 (248)
Q Consensus 151 ~~ 152 (248)
.-
T Consensus 345 if 346 (491)
T COG5243 345 IF 346 (491)
T ss_pred cc
Confidence 43
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.38 E-value=3.6e-13 Score=114.67 Aligned_cols=74 Identities=30% Similarity=0.694 Sum_probs=57.1
Q ss_pred CCCCHHHHhhCCceeeccc---cCCCCCcccccccccccCC----cEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 79 IGWKGEIKDRLPTILFDEE---LRTRDSQCCVCLGEFEIKE----ELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 79 ~~~~~~~~~~l~~~~~~~~---~~~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.+..+.+++.+|.+..+-+ ....+.+|+||++.+..+. .+.+++.|+|.||..||..|+..+.+||+||..+.
T Consensus 148 ~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 148 GKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 5567888899998875422 2234679999999987543 12345559999999999999999999999999875
Q ss_pred c
Q 025788 152 P 152 (248)
Q Consensus 152 ~ 152 (248)
.
T Consensus 228 ~ 228 (238)
T PHA02929 228 S 228 (238)
T ss_pred E
Confidence 4
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.34 E-value=6.9e-13 Score=93.37 Aligned_cols=46 Identities=43% Similarity=1.055 Sum_probs=36.0
Q ss_pred CCCccccccccccc----------CCcEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 101 RDSQCCVCLGEFEI----------KEELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 101 ~~~~C~ICl~~~~~----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
.++.|+||++.|.. +-.+...+ |||.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35569999999932 22344555 999999999999999989999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.9e-13 Score=114.53 Aligned_cols=51 Identities=37% Similarity=1.031 Sum_probs=46.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 152 (248)
.+.+|+|||++|..++.++++| |.|.||..|+++|+. -+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4578999999999999999999 999999999999997 46789999998875
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=6.9e-11 Score=101.52 Aligned_cols=52 Identities=31% Similarity=0.740 Sum_probs=43.0
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
.+....|.+||+.... .--+| |||+||..||..|......||+||..+.+..
T Consensus 236 ~~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 3456789999999774 44556 9999999999999998889999999886643
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.09 E-value=6e-11 Score=77.29 Aligned_cols=46 Identities=33% Similarity=0.871 Sum_probs=39.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
+..|.||++... .+..+| |||. ||..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 568999999866 577888 9999 999999999999999999999874
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.02 E-value=2.8e-10 Score=71.38 Aligned_cols=44 Identities=52% Similarity=1.202 Sum_probs=36.3
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCcc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~ 150 (248)
+|+||++.+. +.+...+ |+|.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 3455555 9999999999999986 77899999753
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=2.7e-10 Score=93.56 Aligned_cols=49 Identities=29% Similarity=0.762 Sum_probs=39.8
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----------------CCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----------------NTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----------------~~~CP~Cr~~~~~~ 153 (248)
++.+|+||++.+.+ .++++ |||.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 46789999999863 45666 9999999999999842 24799999988653
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.98 E-value=2.7e-10 Score=70.24 Aligned_cols=39 Identities=41% Similarity=1.027 Sum_probs=32.4
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLC 146 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 146 (248)
|+||++.+.+ .+..++ |||.||.+|+..|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999884 345676 99999999999999888899998
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.8e-10 Score=94.36 Aligned_cols=51 Identities=24% Similarity=0.641 Sum_probs=41.1
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccccCccccC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLCRCSIVPI 153 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 153 (248)
.....+|.|||+.-+ +.++.. |||.||..||.+||. ..+.||+|+..+...
T Consensus 44 ~~~~FdCNICLd~ak---dPVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---DPVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccC---CCEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 345689999999865 455666 999999999999996 356799999987544
No 13
>PHA02926 zinc finger-like protein; Provisional
Probab=98.93 E-value=5.1e-10 Score=93.04 Aligned_cols=52 Identities=27% Similarity=0.796 Sum_probs=39.6
Q ss_pred CCCCcccccccccccC-----CcEEEcCCCCCcCCHhHHHHHHhc------CCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIK-----EELLQVPSCKHVFHVECIHYWLHS------NTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~-----~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~ 151 (248)
..+.+|+||+|...+. ....+|+.|+|.||..||..|... ...||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4568999999986432 123456679999999999999964 246999998764
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.7e-10 Score=90.08 Aligned_cols=51 Identities=31% Similarity=0.657 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
+....|+|||+.+.+. +.+-.+|||+||..||...++....||+||+.|..
T Consensus 129 ~~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3457899999999853 43444699999999999999999999999987643
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.2e-10 Score=106.39 Aligned_cols=52 Identities=33% Similarity=0.876 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCCc--EEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEE--LLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~--~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..+..|+||+|.+..+.. ..+++ |+|+||..|+..|+++.++||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 357899999999997655 78888 99999999999999999999999995543
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.90 E-value=1.1e-09 Score=78.20 Aligned_cols=51 Identities=33% Similarity=0.792 Sum_probs=38.6
Q ss_pred CCCccccccccccc--------CCc-EEEcCCCCCcCCHhHHHHHHhc---CCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEI--------KEE-LLQVPSCKHVFHVECIHYWLHS---NTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~--------~~~-~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~~ 151 (248)
.++.|.||+..|.. |+. ..+...|+|.||..||.+|+.. +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 47789999998862 222 2233359999999999999964 578999998763
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.85 E-value=2e-09 Score=68.11 Aligned_cols=44 Identities=23% Similarity=0.730 Sum_probs=37.8
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
.|.||++.|......++++ |||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999996566677777 9999999999999866779999985
No 18
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.79 E-value=3.7e-09 Score=66.22 Aligned_cols=38 Identities=32% Similarity=0.895 Sum_probs=28.7
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC----CCCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN----TTCPLC 146 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP~C 146 (248)
|+||++.|. +.+.|+ |||.|+..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~---~Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 466777 99999999999999642 469987
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.78 E-value=2.8e-09 Score=66.25 Aligned_cols=39 Identities=41% Similarity=1.140 Sum_probs=33.0
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHh--cCCCCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH--SNTTCPLC 146 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~C 146 (248)
|+||++.+... ...++ |+|.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998853 34676 999999999999998 56689988
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.77 E-value=6.5e-09 Score=70.61 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=40.0
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|+||++.|.+ ...++ |||+|++.||..|+..+..||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD---PVILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC---CEECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 579999999885 35677 99999999999999888899999988744
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.74 E-value=7.5e-09 Score=62.51 Aligned_cols=38 Identities=45% Similarity=1.198 Sum_probs=32.5
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLC 146 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~C 146 (248)
|+||++.. ..+..++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3677787 999999999999997 66789987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1e-08 Score=93.43 Aligned_cols=50 Identities=28% Similarity=0.670 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
+....|+||++.|.. .++++ |+|.||..||..|+.....||+||..+...
T Consensus 24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 356799999999874 44666 999999999999998878899999987654
No 23
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.8e-08 Score=89.37 Aligned_cols=51 Identities=31% Similarity=1.107 Sum_probs=39.1
Q ss_pred CCCcccccccccccC---C-----------cEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIK---E-----------ELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~---~-----------~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 152 (248)
.-.+|+||+.++.-- . ...+.| |.|+||..|+..|+. .+-.||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346899999887421 1 122446 999999999999998 45599999998865
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-08 Score=87.07 Aligned_cols=54 Identities=31% Similarity=0.723 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCC-------cEEEcCCCCCcCCHhHHHHHH--hcCCCCccccCccccCC
Q 025788 100 TRDSQCCVCLGEFEIKE-------ELLQVPSCKHVFHVECIHYWL--HSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~-------~~~~l~~C~H~fh~~Ci~~wl--~~~~~CP~Cr~~~~~~~ 154 (248)
.++..|+||-..+.... ++..|. |+|+||..||.-|. .++++||.|+..+....
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 35789999998886555 667887 99999999999996 46789999998775443
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.55 E-value=4.1e-08 Score=68.49 Aligned_cols=49 Identities=35% Similarity=0.739 Sum_probs=35.9
Q ss_pred Cccccccccc-----------ccCCcEEEc-CCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 103 SQCCVCLGEF-----------EIKEELLQV-PSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~-----------~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
+.|+||...| ..+++..+. -.|+|.||..||..||..+..||++|+...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4566666554 344443221 149999999999999999999999998764
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.2e-08 Score=82.54 Aligned_cols=50 Identities=36% Similarity=0.848 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHH-HHhcCC-CCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY-WLHSNT-TCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~-wl~~~~-~CP~Cr~~~~~~ 153 (248)
..+..|+||++... ....++ |||+||..||.. |-.++. .||+||+.+.+.
T Consensus 213 ~~d~kC~lC~e~~~---~ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPE---VPSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccC---Cccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 35788999999877 455666 999999999999 876544 599999887654
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.1e-08 Score=67.93 Aligned_cols=51 Identities=35% Similarity=0.797 Sum_probs=37.2
Q ss_pred CCCccccccccccc--------CCcE-EEcCCCCCcCCHhHHHHHHh---cCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEI--------KEEL-LQVPSCKHVFHVECIHYWLH---SNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~--------~~~~-~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~ 151 (248)
.+..|-||.-.|.. ++.. .++-.|.|.||..||.+|+. ++..||+||+...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45589999988852 2322 12224999999999999995 3568999998753
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.40 E-value=1.9e-07 Score=58.59 Aligned_cols=38 Identities=29% Similarity=0.810 Sum_probs=22.3
Q ss_pred cccccccccc-CCcEEEcCCCCCcCCHhHHHHHHhcC----CCCc
Q 025788 105 CCVCLGEFEI-KEELLQVPSCKHVFHVECIHYWLHSN----TTCP 144 (248)
Q Consensus 105 C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~----~~CP 144 (248)
|+||++ |.. ....++|+ |||+|+.+|++.|+..+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 754 44468898 99999999999999743 3566
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=87.02 Aligned_cols=47 Identities=32% Similarity=0.737 Sum_probs=37.3
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-----CCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-----NTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~~~~ 152 (248)
+..|+|||+.... ..++.|||+||..||-+++.. -..||+||..|..
T Consensus 186 ~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV----PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc----ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6789999998763 333359999999999887753 3579999998866
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.37 E-value=2.6e-07 Score=59.80 Aligned_cols=42 Identities=31% Similarity=0.866 Sum_probs=33.0
Q ss_pred cccccccccccCCcEEEcCCCC-----CcCCHhHHHHHHhc--CCCCcccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCK-----HVFHVECIHYWLHS--NTTCPLCR 147 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~--~~~CP~Cr 147 (248)
.|.||++ ...++...+.| |. |.+|..|+..|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 44455566788 75 88999999999953 55899995
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.25 E-value=2.1e-07 Score=81.76 Aligned_cols=49 Identities=29% Similarity=0.717 Sum_probs=41.7
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
-..|-||.+.|.. ..+.| |+|.||.-||..+|..+..||.|+.++....
T Consensus 23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 3579999999983 45666 9999999999999999999999998876443
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.24 E-value=5.8e-07 Score=63.12 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=38.8
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccCCCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPITKL 156 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~ 156 (248)
...|+||.+-|. ..++++ |||.|.+.||..|+.. +.+||+|+.++......
T Consensus 4 ~f~CpIt~~lM~---dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMR---DPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-S---SEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhh---CceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce
Confidence 568999999999 466788 9999999999999987 88999999888664433
No 33
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.23 E-value=3.2e-07 Score=89.57 Aligned_cols=52 Identities=27% Similarity=0.867 Sum_probs=38.8
Q ss_pred CCCCcccccccccccCC-c--EEEcCCCCCcCCHhHHHHHHh--cCCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKE-E--LLQVPSCKHVFHVECIHYWLH--SNTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~-~--~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~~ 151 (248)
.+-.+|+||...+..-+ . -...+.|.|.||..|+.+|+. .+.+||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45678999998765211 1 123446999999999999997 4679999997764
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.21 E-value=6.1e-07 Score=77.38 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=38.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
-..|-||-+.|. +..++.|||.||.-||...|..+..||+||.+..
T Consensus 25 ~lrC~IC~~~i~----ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRIS----IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheee----cceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 357999999988 3344459999999999999999999999998754
No 35
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=1.2e-06 Score=77.25 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=36.8
Q ss_pred CCcccccccccccCCcE--EEcCCCCCcCCHhHHHHHH-hcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEEL--LQVPSCKHVFHVECIHYWL-HSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~--~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 152 (248)
+..|++|..+-.....+ .+.+ |||.||..|++..+ .....||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 46899999963333333 3334 99999999999966 455689999987654
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-06 Score=78.01 Aligned_cols=53 Identities=25% Similarity=0.720 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
+...+|.|||.+-+ .+.+|| |.|. .|..|.+..--+...||+||+++......
T Consensus 288 ~~gkeCVIClse~r---dt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cCCCeeEEEecCCc---ceEEec-chhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 34678999999866 678999 9998 99999988766678899999998654433
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.14 E-value=5e-07 Score=62.93 Aligned_cols=50 Identities=30% Similarity=0.698 Sum_probs=23.2
Q ss_pred CCcccccccccc-cCCcE-EEcC--CCCCcCCHhHHHHHHhc---C--------CCCccccCccc
Q 025788 102 DSQCCVCLGEFE-IKEEL-LQVP--SCKHVFHVECIHYWLHS---N--------TTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~-~~~~~-~~l~--~C~H~fh~~Ci~~wl~~---~--------~~CP~Cr~~~~ 151 (248)
+.+|.||++.+. .++.. .+.+ .|++.||..|+..||.. . ..||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999876 33222 2332 58999999999999952 1 15999998774
No 38
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4.7e-07 Score=80.06 Aligned_cols=54 Identities=28% Similarity=0.604 Sum_probs=43.0
Q ss_pred cCCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccCC
Q 025788 98 LRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPIT 154 (248)
Q Consensus 98 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 154 (248)
....+..|.|||+-+.. .+..++|.|.||.+||..-+. .++.||.||+.+....
T Consensus 39 ~~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred HhhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 34457889999999873 444457999999999988885 5889999999876554
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.6e-06 Score=75.27 Aligned_cols=45 Identities=29% Similarity=0.729 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
.+...|+||++.|... ++++ |+|.||..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence 4578999999999976 6787 9999999999999875568999993
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=9.7e-07 Score=57.20 Aligned_cols=48 Identities=21% Similarity=0.567 Sum_probs=36.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHh-cCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLH-SNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 153 (248)
+++|.||+|.-. ..++.. |||. .|++|-...++ .+..||+||+++...
T Consensus 7 ~dECTICye~pv---dsVlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 7 SDECTICYEHPV---DSVLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred ccceeeeccCcc---hHHHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 478999998754 233444 9998 99999655444 688999999988654
No 41
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.1e-06 Score=76.82 Aligned_cols=49 Identities=29% Similarity=0.870 Sum_probs=35.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc---CCCCccccCcc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS---NTTCPLCRCSI 150 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~ 150 (248)
...|.||-+-+....++.-.-.|||+||..|+.+|+.. +..||+||-.+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 35799995444444444333359999999999999974 46899999443
No 42
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3e-06 Score=62.16 Aligned_cols=48 Identities=31% Similarity=0.707 Sum_probs=35.4
Q ss_pred CCcccccccccc------------cCCcE--EEcCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 102 DSQCCVCLGEFE------------IKEEL--LQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 102 ~~~C~ICl~~~~------------~~~~~--~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
-+.|+||..-+- ..++. .-- .|+|.||..||..||+.+..||+|.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG-~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWG-VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEee-ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 457999876541 11222 223 4999999999999999999999997654
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.97 E-value=2.3e-06 Score=77.79 Aligned_cols=48 Identities=31% Similarity=0.873 Sum_probs=37.6
Q ss_pred CCCcccccccccccCCc-EEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEIKEE-LLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
+-.+|+||||.|..... ++... |.|.||..|+..|.. .+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcC
Confidence 34579999999986543 34444 999999999999964 58999997544
No 44
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=7.1e-06 Score=73.68 Aligned_cols=52 Identities=27% Similarity=0.830 Sum_probs=40.0
Q ss_pred CCCCcccccccccccCC----cEEEcCCCCCcCCHhHHHHHH--hc-----CCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKE----ELLQVPSCKHVFHVECIHYWL--HS-----NTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl--~~-----~~~CP~Cr~~~~ 151 (248)
..+.+|.||++...+.. ....+|+|.|.||..||+.|- .+ .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 35789999999876433 123457799999999999997 33 478999998653
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.83 E-value=3.1e-06 Score=81.50 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=43.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
...|++|+..+..+......+ |+|.||..||+.|-+.-.+||+||..+....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 346899998888766666666 9999999999999999999999999876544
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.70 E-value=7.7e-06 Score=55.18 Aligned_cols=45 Identities=22% Similarity=0.671 Sum_probs=22.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
-..|++|.+.+.+ ...+..|.|+||..||..-+. ..||+|+.+.-
T Consensus 7 lLrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcC---CceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 3579999999884 434446999999999977554 35999987653
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.8e-05 Score=68.84 Aligned_cols=49 Identities=24% Similarity=0.568 Sum_probs=38.6
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 153 (248)
...+|+||+....-+ ..|+ |+|.||+.||.--..+ ..+|++||.+|...
T Consensus 6 ~~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 356899999987643 5666 9999999999776543 56799999998653
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.3e-05 Score=75.72 Aligned_cols=47 Identities=26% Similarity=0.670 Sum_probs=37.8
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPI 153 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 153 (248)
..|++|-..+. .+++. .|+|+||..|+..-+. +...||.|...|.+.
T Consensus 644 LkCs~Cn~R~K---d~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWK---DAVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchh---hHHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 57999997766 34344 4999999999999985 688999999887543
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.49 E-value=3.1e-05 Score=69.66 Aligned_cols=46 Identities=33% Similarity=0.913 Sum_probs=38.2
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc--CCCCccccCccccC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS--NTTCPLCRCSIVPI 153 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~ 153 (248)
.|-||-|. +..+++-| |||..|..|+..|-.. .++||.||..|...
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 49999877 34688888 9999999999999743 67999999988543
No 50
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=9.1e-05 Score=61.95 Aligned_cols=58 Identities=24% Similarity=0.590 Sum_probs=46.0
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc--------CCCCccccCccccCCCCCCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS--------NTTCPLCRCSIVPITKLYNPA 160 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~~~~~~~~~~~~ 160 (248)
.+..|..|-..+..++.+| |- |-|+||.+|+..|-.. ...||.|..+|++......+.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-Lv-CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPv 114 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LV-CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPV 114 (299)
T ss_pred CCCCCceeCCccccCccee-eh-hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchh
Confidence 4567999999999998875 44 9999999999999742 347999999998765554443
No 51
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4.1e-05 Score=60.85 Aligned_cols=39 Identities=21% Similarity=0.800 Sum_probs=30.7
Q ss_pred ceeeccc-cCCCCCcccccccccccCCcEEEcCCCCCcCCH
Q 025788 91 TILFDEE-LRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHV 130 (248)
Q Consensus 91 ~~~~~~~-~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~ 130 (248)
.+.|.++ +.+...+|.||||+++.++.+.+|| |-.+||+
T Consensus 165 rlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 165 RLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 3334433 3344568999999999999999999 9999996
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00012 Score=66.24 Aligned_cols=48 Identities=29% Similarity=0.812 Sum_probs=37.0
Q ss_pred CCcccccccccccCCc-EEEcCCCCCcCCHhHHHHHHhc--CCCCccccCc
Q 025788 102 DSQCCVCLGEFEIKEE-LLQVPSCKHVFHVECIHYWLHS--NTTCPLCRCS 149 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~ 149 (248)
..+|+|||+.+...-+ ..+.+.|||.|-..||+.||.+ ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 5689999999975443 3333459999999999999953 4579999764
No 53
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.40 E-value=3.7e-05 Score=66.81 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=41.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-----------------------CCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-----------------------NTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----------------------~~~CP~Cr~~~~~~ 153 (248)
...|.|||.-|..++...+.+ |.|.||..|+..+|.. ...||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 457999999999999888888 9999999999876631 12599999988543
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00092 Score=57.66 Aligned_cols=52 Identities=31% Similarity=0.556 Sum_probs=38.7
Q ss_pred cCCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh--cCCCCccccCcccc
Q 025788 98 LRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH--SNTTCPLCRCSIVP 152 (248)
Q Consensus 98 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 152 (248)
....+.+|++|-+.-..+ ....+ |+|+||+-||..-+. ...+||.|..+..+
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 445678999998875532 23444 999999999988664 35799999877654
No 55
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0002 Score=65.71 Aligned_cols=49 Identities=37% Similarity=0.859 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..+..|.||+.-+. ..+.+| |||.||..||+.-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~---~pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---PPVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcC---CCcccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 45789999998887 355667 99999999999988888899999998764
No 56
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.12 E-value=0.00015 Score=56.31 Aligned_cols=44 Identities=16% Similarity=0.504 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCcEEEcCCCC------CcCCHhHHHHHHhcCCCCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCK------HVFHVECIHYWLHSNTTCPL 145 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~------H~fh~~Ci~~wl~~~~~CP~ 145 (248)
...+|+||++.+..++.++.++ |+ |+||.+|+.+|-..+..=|.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 3568999999999877888888 77 89999999999543333343
No 57
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.00016 Score=65.06 Aligned_cols=48 Identities=35% Similarity=0.868 Sum_probs=38.3
Q ss_pred CCCCcccccccccccC-CcEEEcCCCCCcCCHhHHHHHHhcC--CCCccccC
Q 025788 100 TRDSQCCVCLGEFEIK-EELLQVPSCKHVFHVECIHYWLHSN--TTCPLCRC 148 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~ 148 (248)
+-+..|-.|-+.+-.. +.+--|| |.|+||..|+...|.++ .+||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456799999888543 3466787 99999999999999754 58999994
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.03 E-value=0.00034 Score=64.49 Aligned_cols=55 Identities=22% Similarity=0.562 Sum_probs=43.7
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
.+.+..|++|...+.++-.. . .|||.||..|+..|+..+..||.|+..+......
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 34568999999998854332 3 4999999999999998899999998877554433
No 59
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.01 E-value=0.00042 Score=70.94 Aligned_cols=52 Identities=29% Similarity=0.762 Sum_probs=41.6
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC----------CCCccccCccc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN----------TTCPLCRCSIV 151 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~----------~~CP~Cr~~~~ 151 (248)
.+.|+.|.||+.+--.....+.|. |+|+||..|...-|++. -.||+|+.+|.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 456789999998877666778887 99999999998766532 26999998864
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.97 E-value=0.00042 Score=44.24 Aligned_cols=45 Identities=27% Similarity=0.515 Sum_probs=22.7
Q ss_pred ccccccccccCCcEEEcC-CCCCcCCHhHHHHHHh-cCCCCccccCcc
Q 025788 105 CCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWLH-SNTTCPLCRCSI 150 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~ 150 (248)
|++|.+++... ...++| +|++.++..|...-+. ....||-||+++
T Consensus 1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999999433 333455 5899999999888876 478999999764
No 61
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.93 E-value=0.00023 Score=62.85 Aligned_cols=50 Identities=26% Similarity=0.553 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...+|.+|-..|.+...+. .|-|.||+.||...|.....||.|...+-..
T Consensus 14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4568999999988654442 6999999999999999899999998766443
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.92 E-value=0.00046 Score=45.96 Aligned_cols=42 Identities=26% Similarity=0.575 Sum_probs=27.1
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh--cCCCCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH--SNTTCPL 145 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~ 145 (248)
....|+|.+..|++ .++-. .|+|+|-++.|..|+. ....||+
T Consensus 10 ~~~~CPiT~~~~~~--PV~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFED--PVKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SS--EEEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhC--CcCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35789999999884 34444 4999999999999994 3457998
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.76 E-value=0.00082 Score=42.95 Aligned_cols=40 Identities=35% Similarity=0.914 Sum_probs=27.3
Q ss_pred ccccccccccCCcEEEcCCCC--C---cCCHhHHHHHHh--cCCCCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCK--H---VFHVECIHYWLH--SNTTCPLC 146 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~--~~~~CP~C 146 (248)
|-||++.-.... ..+.| |+ = ..|..|+..|+. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779999877665 34566 54 3 689999999996 46679887
No 64
>PHA02862 5L protein; Provisional
Probab=96.64 E-value=0.0012 Score=51.63 Aligned_cols=45 Identities=22% Similarity=0.728 Sum_probs=34.1
Q ss_pred CCcccccccccccCCcEEEcCCCC-----CcCCHhHHHHHHh--cCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCK-----HVFHVECIHYWLH--SNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~--~~~~CP~Cr~~~~ 151 (248)
+..|-||+++-.+ . .-| |. ...|..|+..|+. ++..|++|+.++.
T Consensus 2 ~diCWIC~~~~~e--~--~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCC--C--ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4579999998543 2 244 54 4689999999996 4668999998874
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.002 Score=54.84 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=46.5
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
..|+||.+.+.+...+.+|..|||+|+.+|+++.+.....||+|-.++...+
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 5699999999988888888889999999999999988899999998886654
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.55 E-value=0.0018 Score=51.57 Aligned_cols=50 Identities=26% Similarity=0.711 Sum_probs=36.1
Q ss_pred CCCCCcccccccccccCCcEEEcC-CCCC---cCCHhHHHHHHh--cCCCCccccCcccc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVP-SCKH---VFHVECIHYWLH--SNTTCPLCRCSIVP 152 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~-~C~H---~fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 152 (248)
...+..|-||.++.. +. ..| .|.. ..|.+|+..|+. +...|++|+.++.-
T Consensus 5 s~~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 445779999998853 22 245 2444 469999999996 45689999987643
No 67
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0069 Score=53.59 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=35.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 149 (248)
....|++|+.....+ ..... -|-+||+.||-..+..+..||+=..+
T Consensus 299 ~~~~CpvClk~r~Np--tvl~v-SGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP--TVLEV-SGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred ccccChhHHhccCCC--ceEEe-cceEEeHHHHHHHHHhcCCCCccCCc
Confidence 456899999886643 22332 68999999999999999999985443
No 68
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.00052 Score=59.59 Aligned_cols=45 Identities=24% Similarity=0.667 Sum_probs=35.4
Q ss_pred CCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
+..|+||++... .+.+|+ |||. -|..|-... ..||+||+.|....
T Consensus 300 ~~LC~ICmDaP~---DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~rvv 345 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLE-CGHMVTCTKCGKRM----NECPICRQYIVRVV 345 (350)
T ss_pred HHHHHHHhcCCc---ceEEee-cCcEEeehhhcccc----ccCchHHHHHHHHH
Confidence 457999998755 688998 9996 789997543 48999998875543
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.41 E-value=0.0013 Score=54.20 Aligned_cols=45 Identities=20% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
...|.||-++|+. .++. +|||.||..|...-++....|-+|.+..
T Consensus 196 PF~C~iCKkdy~s---pvvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYES---PVVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccc---hhhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 4689999999984 4445 4999999999988888888999997654
No 70
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.38 E-value=0.0021 Score=56.13 Aligned_cols=47 Identities=30% Similarity=0.635 Sum_probs=35.8
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHH-hcCCCCcccc-Ccccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL-HSNTTCPLCR-CSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr-~~~~~ 152 (248)
..|+.|..-+.. ....+.|+|.||.+||..-| .....||.|. +++.-
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 679999888774 33445699999999998776 4678999994 44443
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.32 E-value=0.0014 Score=48.80 Aligned_cols=33 Identities=33% Similarity=0.754 Sum_probs=27.2
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHH
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIH 134 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 134 (248)
+.+..|++|-..+.. ....+.| |||+||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 346789999999886 4566788 99999999974
No 72
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0016 Score=58.22 Aligned_cols=48 Identities=35% Similarity=0.702 Sum_probs=34.1
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITK 155 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 155 (248)
....|.||+++.+ ....+| |||+-| |..-- +....||+||+.|....+
T Consensus 304 ~p~lcVVcl~e~~---~~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~~~~k 351 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK---SAVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIRLVRK 351 (355)
T ss_pred CCCceEEecCCcc---ceeeec-CCcEEE--chHHH-hhCCCCchhHHHHHHHHH
Confidence 3467999999977 477888 999855 54332 334569999998755433
No 73
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.0034 Score=56.00 Aligned_cols=49 Identities=22% Similarity=0.566 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.++..|+||...-. ..+..| |+|.-|+.||.+-+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 46788999976533 455777 99999999999999999999999988764
No 74
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.11 E-value=0.003 Score=61.99 Aligned_cols=51 Identities=31% Similarity=0.798 Sum_probs=39.1
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-------CCCCccccCc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-------NTTCPLCRCS 149 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~ 149 (248)
.....+|.||.+.+.....+--...|-|+||..||..|-.. .-.||.|+..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 44567899999999876666444458899999999999853 1269999843
No 75
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0041 Score=56.54 Aligned_cols=47 Identities=28% Similarity=0.690 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc--------CCCCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS--------NTTCPLCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~ 148 (248)
....|.||+++..-..-...+| |+|+||+.|+..++.. .-.||-|..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4578999999987657788888 9999999999999852 236876543
No 76
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.98 E-value=0.0023 Score=59.87 Aligned_cols=50 Identities=26% Similarity=0.686 Sum_probs=37.9
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~ 153 (248)
.++.+|-+|.+.-+ ...... |.|.||+.||..++. .+-+||.|...+.-+
T Consensus 534 k~~~~C~lc~d~ae---d~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE---DYIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhh---hhHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34568999998755 344554 999999999999885 256899998766443
No 77
>PHA03096 p28-like protein; Provisional
Probab=95.87 E-value=0.004 Score=54.86 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=33.4
Q ss_pred CcccccccccccCC----cEEEcCCCCCcCCHhHHHHHHhc---CCCCccccC
Q 025788 103 SQCCVCLGEFEIKE----ELLQVPSCKHVFHVECIHYWLHS---NTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~----~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~ 148 (248)
..|.||++...... .--.|+.|.|.||..|+..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999876532 22356789999999999999842 345555543
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.51 E-value=0.015 Score=50.65 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
.....|+|...+|......+.+-.|||+|...++..-- ....||+|-.++...+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 45678999999996555555554599999999998873 3568999998886544
No 79
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0059 Score=53.31 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=38.0
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.+.|-||...|.. .++.. |+|.||..|...-++....|.+|.+.+.
T Consensus 241 Pf~c~icr~~f~~---pVvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Ccccccccccccc---chhhc-CCceeehhhhccccccCCcceecccccc
Confidence 3569999999984 44554 9999999999888888899999987653
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.36 E-value=0.015 Score=51.95 Aligned_cols=49 Identities=27% Similarity=0.589 Sum_probs=38.1
Q ss_pred cCCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHH--HhcCCCCccccCcc
Q 025788 98 LRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW--LHSNTTCPLCRCSI 150 (248)
Q Consensus 98 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w--l~~~~~CP~Cr~~~ 150 (248)
.++++..|.||-+... ...++| |+|..|--|.-.. |...+.||+||..-
T Consensus 57 tDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 57 TDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4455678999998866 567888 9999999996443 45678999999864
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.0057 Score=52.02 Aligned_cols=44 Identities=30% Similarity=0.702 Sum_probs=31.1
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.|--|...-. ++...++- |+|+||..|...-. ...||+||+.+.
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 4666665444 66666665 99999999985532 238999999854
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.22 E-value=0.011 Score=52.68 Aligned_cols=56 Identities=20% Similarity=0.445 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCCcE-EEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccCCCC
Q 025788 100 TRDSQCCVCLGEFEIKEEL-LQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~~ 156 (248)
++++.|+.|+|++...++- .-.+ ||-..|.-|....-+ -+..||-||+.+.+.+..
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 3455699999999876654 2334 887777777544332 356899999987665433
No 83
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.0016 Score=58.71 Aligned_cols=48 Identities=19% Similarity=0.607 Sum_probs=41.1
Q ss_pred CcccccccccccC-CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 103 SQCCVCLGEFEIK-EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..|+||.+.++.. +++..+- |||.+|.+|+.+||.....||.||+.+.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 5699999999876 5565665 9999999999999988888999999875
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.03 E-value=0.013 Score=38.37 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=32.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|..|... +..-.++| |+|+.+..|.+-+ +-.-||+|.+++...
T Consensus 7 ~~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 3456666544 23455787 9999999997664 446799999888654
No 85
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.79 E-value=0.014 Score=36.50 Aligned_cols=41 Identities=20% Similarity=0.588 Sum_probs=22.6
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCC--CCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNT--TCPLC 146 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~C 146 (248)
|.+|.+-...|...... .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777776655444222 3888999999999997543 79987
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.019 Score=50.78 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=38.0
Q ss_pred CcccccccccccCC---cEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCcc
Q 025788 103 SQCCVCLGEFEIKE---ELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSI 150 (248)
Q Consensus 103 ~~C~ICl~~~~~~~---~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~ 150 (248)
..|-||-++|..++ ..+.|. |||.|+..|+..-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998764 346666 9999999999877754 45799999875
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.02 Score=46.48 Aligned_cols=29 Identities=34% Similarity=0.917 Sum_probs=23.6
Q ss_pred CCCCcCCHhHHHHHHhc-----C------CCCccccCccc
Q 025788 123 SCKHVFHVECIHYWLHS-----N------TTCPLCRCSIV 151 (248)
Q Consensus 123 ~C~H~fh~~Ci~~wl~~-----~------~~CP~Cr~~~~ 151 (248)
.||.-||.-|+..||+. + ..||+|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 39999999999999963 1 25999988764
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=0.016 Score=57.21 Aligned_cols=40 Identities=28% Similarity=0.875 Sum_probs=31.2
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
..|..|-..+.-+ .+... |||.||.+|+. .+...||.|+.
T Consensus 841 skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccch
Confidence 5899998887642 33443 99999999998 45678999986
No 89
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.021 Score=50.24 Aligned_cols=43 Identities=35% Similarity=0.664 Sum_probs=30.1
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.|.-|--.+. -.-|+.| |+|+||.+|... ...+.||.|-..+.
T Consensus 92 fCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 5777744433 2346778 999999999744 34568999977654
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.76 E-value=0.089 Score=34.43 Aligned_cols=35 Identities=23% Similarity=0.651 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHH
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY 135 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 135 (248)
....|.+|-+.|..++.+++-|.|+=.+|+.|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35679999999998899999999999999999643
No 91
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.89 E-value=0.056 Score=47.30 Aligned_cols=49 Identities=22% Similarity=0.482 Sum_probs=38.8
Q ss_pred CCcccccccccccCCc-EEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEE-LLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+||.+.+-.... +..++ |||.-|..|+......+.+||+|.+ +..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 4459999998866554 45666 9999999999998866699999987 433
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.58 E-value=0.08 Score=48.12 Aligned_cols=28 Identities=32% Similarity=1.029 Sum_probs=21.5
Q ss_pred CCCcCCHhHHHHHHhc-------------CCCCccccCccc
Q 025788 124 CKHVFHVECIHYWLHS-------------NTTCPLCRCSIV 151 (248)
Q Consensus 124 C~H~fh~~Ci~~wl~~-------------~~~CP~Cr~~~~ 151 (248)
|.-++|.+|+.+|+.. +-.||+||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4567899999999842 236999999864
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.53 E-value=0.048 Score=53.67 Aligned_cols=47 Identities=30% Similarity=0.723 Sum_probs=36.2
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc--CCCCccccCccccCC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS--NTTCPLCRCSIVPIT 154 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 154 (248)
..|.||++ .+.+...+ |+|.||..|+..-+.. ...||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999998 23455565 9999999999888753 346999998775543
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.05 Score=45.83 Aligned_cols=39 Identities=28% Similarity=0.723 Sum_probs=29.9
Q ss_pred ccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
|-.|.+. +..+..+| |.|. +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 8888766 44688998 9997 99999754 346999987553
No 95
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=0.059 Score=53.55 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=28.4
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL 137 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 137 (248)
+.++.|.+|...+... .-.+.| |||.||.+|+..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567899999887743 445677 99999999997754
No 96
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=91.56 E-value=0.12 Score=50.90 Aligned_cols=52 Identities=25% Similarity=0.613 Sum_probs=38.9
Q ss_pred CCCCCcccccccccccCCcEEEcCCCC-----CcCCHhHHHHHHh--cCCCCccccCcccc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCK-----HVFHVECIHYWLH--SNTTCPLCRCSIVP 152 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 152 (248)
.+++..|-||..+=..++.+ ..| |+ -..|.+|+.+|+. ....|-+|+.++.-
T Consensus 9 N~d~~~CRICr~e~~~d~pL-fhP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPL-FHP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred CccchhceeecCCCCCCCcC-ccc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 34567999999886655544 666 65 3489999999996 45689999987653
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=0.15 Score=46.48 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC---CCCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN---TTCPLCR 147 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr 147 (248)
.-..|+|=.+.-.+...+..|. |||+..++-+.+..++. ..||+|=
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3468999988888888889998 99999999999987643 5799994
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.36 E-value=0.064 Score=55.32 Aligned_cols=44 Identities=25% Similarity=0.707 Sum_probs=36.5
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCS 149 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 149 (248)
..|.||++.+.....+. .|||.+|..|...|+..+..||.|...
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence 47999999988433332 499999999999999999999999843
No 99
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.22 E-value=0.086 Score=33.39 Aligned_cols=30 Identities=23% Similarity=0.760 Sum_probs=22.0
Q ss_pred CCC-CcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 123 SCK-HVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 123 ~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.|+ |..|..|+...+.+...||+|..+++.
T Consensus 17 ~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 376 999999999999999999999987754
No 100
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=0.081 Score=45.44 Aligned_cols=52 Identities=21% Similarity=0.670 Sum_probs=36.4
Q ss_pred CCCCCcccccccccccCCcE-EEcCCCC-----CcCCHhHHHHHHhcC--------CCCccccCccc
Q 025788 99 RTRDSQCCVCLGEFEIKEEL-LQVPSCK-----HVFHVECIHYWLHSN--------TTCPLCRCSIV 151 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~-~~l~~C~-----H~fh~~Ci~~wl~~~--------~~CP~Cr~~~~ 151 (248)
.+.+..|-||+..=+++..- -+-| |. |-.|..|+..|+..+ -.||-|+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 44577899999885544322 2344 53 679999999999421 26999998754
No 101
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.91 E-value=0.62 Score=28.10 Aligned_cols=26 Identities=23% Similarity=0.490 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 26 AFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
.+++++++.++++++.++++.++++|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444444444444443333333
No 102
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.57 E-value=0.28 Score=39.26 Aligned_cols=35 Identities=17% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCCcccccccccccCCcEEEcC------C-----CCC-cCCHhHHHHHHh
Q 025788 101 RDSQCCVCLGEFEIKEELLQVP------S-----CKH-VFHVECIHYWLH 138 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~------~-----C~H-~fh~~Ci~~wl~ 138 (248)
++..|+||||---+ .++|- + |+- .-|..|++++-+
T Consensus 1 ed~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 35789999987542 22332 0 443 358899998864
No 103
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.096 Score=50.42 Aligned_cols=43 Identities=23% Similarity=0.556 Sum_probs=30.8
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
..|.||+..|......-+...|||..|..|+..-. +.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 57999988876554433333599999999998754 46888 543
No 104
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.07 E-value=0.17 Score=49.58 Aligned_cols=23 Identities=35% Similarity=0.985 Sum_probs=21.2
Q ss_pred CCCCcCCHhHHHHHHhcCCCCcc
Q 025788 123 SCKHVFHVECIHYWLHSNTTCPL 145 (248)
Q Consensus 123 ~C~H~fh~~Ci~~wl~~~~~CP~ 145 (248)
.|+|+.|..|...|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999998889996
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=0.27 Score=43.07 Aligned_cols=46 Identities=20% Similarity=0.538 Sum_probs=33.0
Q ss_pred cccccccccccCCcE--EEcCCCCCcCCHhHHHHHHh-cCCCCccccCcc
Q 025788 104 QCCVCLGEFEIKEEL--LQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSI 150 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~--~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~ 150 (248)
.|++|..+-.-...+ .+- .|+|..|..|++..+. +...||-|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in-~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMIN-ECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeec-cccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 488887664333332 333 4999999999999985 566899997654
No 106
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.23 E-value=0.18 Score=44.61 Aligned_cols=51 Identities=29% Similarity=0.739 Sum_probs=37.5
Q ss_pred CCcccccccccccCCc-EEEcCCCC-----CcCCHhHHHHHHh--cCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEE-LLQVPSCK-----HVFHVECIHYWLH--SNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~-~~~l~~C~-----H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~~ 153 (248)
+..|-||.++...... ....| |. +..|..|++.|+. ++..|-+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999998764432 33555 54 5689999999996 677899998766544
No 107
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=0.28 Score=47.28 Aligned_cols=50 Identities=30% Similarity=0.743 Sum_probs=39.7
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
.+....|.||++++ ..+..+ |. |..|+..|+..+..||+|+..+......
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~ 525 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDFL 525 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccccc
Confidence 34567899999998 355555 88 8999999999899999999877655443
No 108
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=88.47 E-value=0.27 Score=38.12 Aligned_cols=12 Identities=33% Similarity=1.001 Sum_probs=5.0
Q ss_pred HHHHHHHHhhhc
Q 025788 39 LFLLFYLFYLKR 50 (248)
Q Consensus 39 ~~~~~~~~~~~~ 50 (248)
+++++++++++.
T Consensus 12 i~l~~~~~~~~~ 23 (130)
T PF12273_consen 12 ILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 109
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=88.41 E-value=0.36 Score=37.51 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=37.2
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 153 (248)
.-.+|-||.|...+..-+.--.-||-..|..|....++ -+..||+|+..+...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45689999998764433322224899999999766544 367999999887553
No 110
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.34 E-value=0.61 Score=35.92 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 025788 24 YQAFIFSIPILFSI 37 (248)
Q Consensus 24 ~~~i~~~i~il~~i 37 (248)
+..|++++++.+++
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 34444444444433
No 111
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.08 E-value=0.44 Score=42.38 Aligned_cols=44 Identities=25% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCCcccccccccccCCcEEEcCCC--CCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSC--KHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C--~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.-.+|+||.+.+..+ ... | ||+.|..|-.+ ....||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----cee-cCCCcEehhhhhhh---hcccCCcccccccc
Confidence 346899999998843 233 6 69999999653 45689999998763
No 112
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=0.3 Score=42.80 Aligned_cols=29 Identities=21% Similarity=0.662 Sum_probs=22.7
Q ss_pred CCCcCCHhHHHHHHhc-------------CCCCccccCcccc
Q 025788 124 CKHVFHVECIHYWLHS-------------NTTCPLCRCSIVP 152 (248)
Q Consensus 124 C~H~fh~~Ci~~wl~~-------------~~~CP~Cr~~~~~ 152 (248)
|...+|.+|+.+|+.. +-+||+||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 6678999999999842 3479999998643
No 113
>PF15102 TMEM154: TMEM154 protein family
Probab=85.70 E-value=0.16 Score=40.06 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 19 IQLKLYQAFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
-+..+++++++..+++++++++++++++|+||+
T Consensus 53 ~q~efiLmIlIP~VLLvlLLl~vV~lv~~~kRk 85 (146)
T PF15102_consen 53 SQLEFILMILIPLVLLVLLLLSVVCLVIYYKRK 85 (146)
T ss_pred CCcceEEEEeHHHHHHHHHHHHHHHheeEEeec
Confidence 344433344444334444444444444444433
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.83 E-value=0.42 Score=44.07 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=27.0
Q ss_pred CCCcccccccccccC-CcEEEcCCCCCcCCHhHHHHHHh
Q 025788 101 RDSQCCVCLGEFEIK-EELLQVPSCKHVFHVECIHYWLH 138 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~-~~~~~l~~C~H~fh~~Ci~~wl~ 138 (248)
...+|.||+.++... +..... .|+|.||.+|+.+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhh
Confidence 456899999444444 333334 5999999999998886
No 115
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=83.43 E-value=0.92 Score=29.37 Aligned_cols=43 Identities=26% Similarity=0.637 Sum_probs=22.0
Q ss_pred ccccccccccCC------cEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 105 CCVCLGEFEIKE------ELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 105 C~ICl~~~~~~~------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
|--|+..|..+. ....-+.|++.|+.+|=.--=+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555677766542 3456668999999999422223455899883
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.10 E-value=0.41 Score=40.86 Aligned_cols=48 Identities=25% Similarity=0.613 Sum_probs=35.7
Q ss_pred CCCcccccccccccCCcE--EEcCCCCCcCCHhHHHHHHhc-CCCCc--cccC
Q 025788 101 RDSQCCVCLGEFEIKEEL--LQVPSCKHVFHVECIHYWLHS-NTTCP--LCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~--~~l~~C~H~fh~~Ci~~wl~~-~~~CP--~Cr~ 148 (248)
.+..|+||..+-.-.-.+ .+-|.|-|..|..|++..+.. ...|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 466899999875443333 444579999999999999964 56899 5743
No 117
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=82.77 E-value=0.55 Score=43.43 Aligned_cols=34 Identities=26% Similarity=0.604 Sum_probs=28.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL 137 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 137 (248)
+++..|+||-..|+ +.++|| |+|..|..|...-+
T Consensus 2 eeelkc~vc~~f~~---epiil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYR---EPIILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhcc---CceEee-cccHHHHHHHHhhc
Confidence 35678999999988 577898 99999999987554
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=81.91 E-value=1.1 Score=37.47 Aligned_cols=41 Identities=34% Similarity=0.944 Sum_probs=29.9
Q ss_pred CCCcccccccc-----cccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 101 RDSQCCVCLGE-----FEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 101 ~~~~C~ICl~~-----~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
.+..|.+|-.+ |.. +.+...+.|+-+||..|... ..||.|-
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 46789999752 222 25666677999999999752 6799994
No 119
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=81.75 E-value=1.6 Score=33.61 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 26 AFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
+++++|+.+++.++.++++++|+.||
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 120
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.52 E-value=0.73 Score=42.49 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=42.3
Q ss_pred CCHHHHhhCCceeecccc-----CCCCCcccccccccccCCcEEEcC-CCCCcCCHhHHHHHHhcCCCCccc
Q 025788 81 WKGEIKDRLPTILFDEEL-----RTRDSQCCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWLHSNTTCPLC 146 (248)
Q Consensus 81 ~~~~~~~~l~~~~~~~~~-----~~~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~~~~~CP~C 146 (248)
++=+..+++..-.+.... ...-..|+.|.-.++.......+. .|||.||+.|...|...+..|..|
T Consensus 280 ~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 280 LSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 455555555543333211 133467999987776655543333 389999999999998877777554
No 121
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=79.92 E-value=2.2 Score=38.01 Aligned_cols=14 Identities=43% Similarity=0.524 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 025788 26 AFIFSIPILFSIIL 39 (248)
Q Consensus 26 ~i~~~i~il~~i~~ 39 (248)
.++++++++++|++
T Consensus 257 ~I~aSiiaIliIVL 270 (299)
T PF02009_consen 257 AIIASIIAILIIVL 270 (299)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444333333
No 122
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.91 E-value=0.51 Score=46.64 Aligned_cols=45 Identities=20% Similarity=0.524 Sum_probs=32.1
Q ss_pred CCCcccccccccccC----CcEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 101 RDSQCCVCLGEFEIK----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
.+..|.-|++..... +.+.++- |+|+||+.|+..-..++. |-.|.
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChhh
Confidence 345799998876532 3566776 999999999977765544 65553
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.40 E-value=0.91 Score=44.98 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=34.8
Q ss_pred Cccccccccccc---CCcEEEcCCCCCcCCHhHHHHHHhc------CCCCccccCccccC
Q 025788 103 SQCCVCLGEFEI---KEELLQVPSCKHVFHVECIHYWLHS------NTTCPLCRCSIVPI 153 (248)
Q Consensus 103 ~~C~ICl~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 153 (248)
..|.+|..++.. +..+..+..|+|.||..||..|..+ .-.|++|..-|...
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 457777666665 2223233359999999999999853 34689998776543
No 124
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=78.58 E-value=0.82 Score=29.38 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=19.0
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-----CCCCccccCc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-----NTTCPLCRCS 149 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~~ 149 (248)
..|+|....+.. .+|-. .|.|.-|.+ ++.|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~-~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGK-NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEET-T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCC-cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 368888877763 34444 499985544 3456542 2369999753
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.32 E-value=2 Score=42.40 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=30.5
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCcc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPL 145 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~ 145 (248)
..|.+|-..+. |.. ...+.|+|.-|..|+.+|+..+.-||.
T Consensus 780 ~~CtVC~~vi~-G~~-~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVD-VWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeE-eecccccccccHHHHHHHHhcCCCCcc
Confidence 36889976655 222 234469999999999999988777766
No 126
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=78.10 E-value=6.2 Score=27.68 Aligned_cols=19 Identities=16% Similarity=0.488 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 025788 33 ILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 33 il~~i~~~~~~~~~~~~~r 51 (248)
++|++++..++++..++.+
T Consensus 11 ivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 11 IVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444333
No 127
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=78.03 E-value=1.7 Score=25.25 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=24.7
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
|..|.+.+...+.. +.. =+..||..|+ .|..|+..|
T Consensus 2 C~~C~~~i~~~~~~-~~~-~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRA-LGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEe-CCccccccCC--------CCcccCCcC
Confidence 77888877755233 222 4678999885 788888765
No 128
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=77.59 E-value=0.6 Score=28.59 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025788 30 SIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 30 ~i~il~~i~~~~~~~~~~~~ 49 (248)
++.++++++++++++++++|
T Consensus 18 vVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 18 VVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred EechHHHHHHHHHHhheEEe
Confidence 34444444444444443343
No 129
>PTZ00046 rifin; Provisional
Probab=77.39 E-value=3.5 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 23 LYQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
+...++++++.++++++++++++..+|.||
T Consensus 313 ~~taIiaSiiAIvVIVLIMvIIYLILRYRR 342 (358)
T PTZ00046 313 LQTAIIASIVAIVVIVLIMVIIYLILRYRR 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445667777666666655555544444443
No 130
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=77.27 E-value=1.1 Score=37.51 Aligned_cols=42 Identities=26% Similarity=0.610 Sum_probs=33.7
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
..|.+|.+-.-.+ ++.- .|+-.+|..|+...+++...||.|.
T Consensus 182 k~Cn~Ch~LvIqg--~rCg-~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCG-SCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee--eccC-cccchhhhHHHHHHhcccCcCCchh
Confidence 5799999876643 3333 4888899999999999999999994
No 131
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.13 E-value=0.69 Score=45.28 Aligned_cols=46 Identities=26% Similarity=0.674 Sum_probs=35.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc---CCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS---NTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~~~ 150 (248)
...+|.||+..+..+ ..+ .|.|.|+..|+..-|.. ...||+|+..+
T Consensus 20 k~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 357899999998865 334 49999999998776643 45799999654
No 132
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=75.95 E-value=4 Score=37.05 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
...+++++++++++++++++++..+|.||
T Consensus 309 ~t~IiaSiIAIvvIVLIMvIIYLILRYRR 337 (353)
T TIGR01477 309 YTPIIASIIAILIIVLIMVIIYLILRYRR 337 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666665555554444444433
No 133
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.37 E-value=3 Score=36.02 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=38.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
...|+|---+|.....-..+-.|||+|-..-+.+. ...+|++|...+...+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 45799988777755444445469999998887664 357899999988665543
No 134
>PF15050 SCIMP: SCIMP protein
Probab=74.47 E-value=5.8 Score=30.30 Aligned_cols=13 Identities=8% Similarity=0.324 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPIL 34 (248)
Q Consensus 22 ~~~~~i~~~i~il 34 (248)
.+|.++.++|+++
T Consensus 7 nFWiiLAVaII~v 19 (133)
T PF15050_consen 7 NFWIILAVAIILV 19 (133)
T ss_pred chHHHHHHHHHHH
Confidence 3456666665443
No 135
>PRK09458 pspB phage shock protein B; Provisional
Probab=74.44 E-value=7.8 Score=27.12 Aligned_cols=24 Identities=4% Similarity=0.180 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCc
Q 025788 30 SIPILFSIILFLLFYLFYLKRRAS 53 (248)
Q Consensus 30 ~i~il~~i~~~~~~~~~~~~~r~~ 53 (248)
+.+++|++++..++++..++.+++
T Consensus 8 ~PliiF~ifVaPiWL~LHY~sk~~ 31 (75)
T PRK09458 8 IPLTIFVLFVAPIWLWLHYRSKRQ 31 (75)
T ss_pred HhHHHHHHHHHHHHHHHhhccccc
Confidence 333444555555555555554443
No 136
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=73.82 E-value=3.2 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 025788 33 ILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 33 il~~i~~~~~~~~~~~~~r~ 52 (248)
|+++++++++++++|+.|||
T Consensus 267 vllil~vvliiLYiWlyrrR 286 (295)
T TIGR01478 267 VLIILTVVLIILYIWLYRRR 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444443
No 138
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=73.69 E-value=4 Score=26.84 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=32.0
Q ss_pred CcccccccccccCCcEEEcCCCC--CcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCK--HVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|-.|-.++..+..-... |. ..||.+|.+..| +..||.|...+..
T Consensus 6 pnCE~C~~dLp~~s~~A~I--CSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI--CSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceE--EeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 3577777777665522222 66 459999999987 4689999877654
No 139
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=73.26 E-value=1.9 Score=37.43 Aligned_cols=48 Identities=23% Similarity=0.502 Sum_probs=34.3
Q ss_pred CcccccccccccCCcEEEc---CCCCCcCCHhHHHHHHhc---------CCCCccccCcc
Q 025788 103 SQCCVCLGEFEIKEELLQV---PSCKHVFHVECIHYWLHS---------NTTCPLCRCSI 150 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l---~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~ 150 (248)
.+|-+|.+++.+.+..+.. +.|+-++|..|+..-+.. ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999999544444322 258889999999884421 34799998743
No 140
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=72.91 E-value=6.1 Score=35.21 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025788 22 KLYQAFIFSIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 22 ~~~~~i~~~i~il~~i~~~~~~~~~~~~ 49 (248)
.++..+++++++++++++++++++ |+|
T Consensus 257 ~I~aSiiaIliIVLIMvIIYLILR-YRR 283 (299)
T PF02009_consen 257 AIIASIIAILIIVLIMVIIYLILR-YRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 344444444444444444444444 444
No 141
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=71.44 E-value=13 Score=23.47 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025788 21 LKLYQAFIFSIPILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 21 ~~~~~~i~~~i~il~~i~~~~~~~~~~~~~ 50 (248)
+..|..+.+++++-+.+.+++.++++++++
T Consensus 5 LRs~L~~~F~~lIC~Fl~~~~~F~~F~~Kq 34 (54)
T PF06716_consen 5 LRSYLLLAFGFLICLFLFCLVVFIWFVYKQ 34 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544
No 142
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=71.00 E-value=2.4 Score=23.40 Aligned_cols=23 Identities=26% Similarity=0.415 Sum_probs=12.4
Q ss_pred cccccccccccCCcEEEcCCCCCcC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVF 128 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~f 128 (248)
.|+-|...+.. ..+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 46666655442 334445566666
No 143
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=70.59 E-value=1.4 Score=29.81 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 25 QAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
..++.++++.++++++++++++|+
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444444444444444443
No 144
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.04 E-value=5.5 Score=30.15 Aligned_cols=46 Identities=30% Similarity=0.583 Sum_probs=34.1
Q ss_pred CCcccccccccccCC----------cEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 102 DSQCCVCLGEFEIKE----------ELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~----------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
...|--|+..|.... ....-+.|++.||.+|=.-+-+.-.+||-|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999886431 1234557999999999777766667899995
No 145
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=69.87 E-value=1.1 Score=32.98 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=4.6
Q ss_pred HHHHHHHHHhhh
Q 025788 38 ILFLLFYLFYLK 49 (248)
Q Consensus 38 ~~~~~~~~~~~~ 49 (248)
++.+++|+|++|
T Consensus 82 lv~~l~w~f~~r 93 (96)
T PTZ00382 82 LVGFLCWWFVCR 93 (96)
T ss_pred HHHHHhheeEEe
Confidence 333333344433
No 146
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=68.92 E-value=4.7 Score=35.95 Aligned_cols=53 Identities=23% Similarity=0.553 Sum_probs=35.6
Q ss_pred CCCCccccccccccc---------------C-CcEEEcCCCCCcCCHhHHHHHHhc---------CCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEI---------------K-EELLQVPSCKHVFHVECIHYWLHS---------NTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~---------------~-~~~~~l~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~~~~ 153 (248)
..+.+|++|+..=.. + -.-.+-| |||+--..-..-|-+. +..||.|-..+...
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 346789999875210 0 0123455 9999988889999752 44799998766543
No 147
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.66 E-value=2.7 Score=39.55 Aligned_cols=36 Identities=28% Similarity=0.672 Sum_probs=29.5
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH 138 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 138 (248)
.....|-||.+.+.. .+..+. |+|.||..|....+.
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhh
Confidence 456789999999875 455665 999999999999885
No 148
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=67.75 E-value=6.4 Score=31.87 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 025788 25 QAFIFSI 31 (248)
Q Consensus 25 ~~i~~~i 31 (248)
..+++.+
T Consensus 96 R~~~Vl~ 102 (163)
T PF06679_consen 96 RALYVLV 102 (163)
T ss_pred hhHHHHH
Confidence 3333333
No 149
>PF15339 Afaf: Acrosome formation-associated factor
Probab=67.68 E-value=12 Score=30.51 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 025788 15 YPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRAS 53 (248)
Q Consensus 15 ~p~~~~~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r~~ 53 (248)
..+++.++++..|.++-.++|++++++++...|..+..+
T Consensus 124 ~le~~KlkLmLGIsLmTl~lfv~Ll~~c~atlyklk~l~ 162 (200)
T PF15339_consen 124 ELEELKLKLMLGISLMTLFLFVILLAFCSATLYKLKHLS 162 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457888999988888888888777777777666554443
No 150
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.49 E-value=3.5 Score=36.72 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc---CCCCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS---NTTCPLCR 147 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~---~~~CP~Cr 147 (248)
-..|++--+.-.+...+..|. |||+.-.+-++..-++ ...||+|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 457998777666666677776 9999999999887653 45799993
No 151
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=67.20 E-value=1.7 Score=41.96 Aligned_cols=43 Identities=28% Similarity=0.750 Sum_probs=26.9
Q ss_pred CCCcccccccc-----cccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCcccc
Q 025788 101 RDSQCCVCLGE-----FEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCR 147 (248)
Q Consensus 101 ~~~~C~ICl~~-----~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr 147 (248)
....|.+|... |+ .++++..-.|+++||..|... .+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 45678888321 22 233444445999999999643 344599993
No 152
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=66.45 E-value=15 Score=25.71 Aligned_cols=12 Identities=8% Similarity=0.309 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhh
Q 025788 38 ILFLLFYLFYLK 49 (248)
Q Consensus 38 ~~~~~~~~~~~~ 49 (248)
++..++++..++
T Consensus 16 fVap~wl~lHY~ 27 (75)
T TIGR02976 16 FVAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHHH
Confidence 334444444343
No 153
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=65.38 E-value=4.1 Score=24.33 Aligned_cols=26 Identities=31% Similarity=0.858 Sum_probs=15.7
Q ss_pred cccccccccccCCc-------EEEcCCCCCcCC
Q 025788 104 QCCVCLGEFEIKEE-------LLQVPSCKHVFH 129 (248)
Q Consensus 104 ~C~ICl~~~~~~~~-------~~~l~~C~H~fh 129 (248)
.|+-|...|..++. ...-+.|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57777777765443 234445777764
No 154
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.12 E-value=4.8 Score=36.06 Aligned_cols=47 Identities=19% Similarity=0.573 Sum_probs=35.5
Q ss_pred CcccccccccccCCcEEEcC-CCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 103 SQCCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
..|+||-+.....+.. .+| .|++..|..|+..-...+..||.||++.
T Consensus 250 ~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCcc
Confidence 5799999987544333 444 4888888888887777888999999554
No 155
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=63.90 E-value=3.4 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=27.4
Q ss_pred ccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 105 CCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 105 C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
|+-|...+..++.+ +.. -+..||..|+ .|-.|++.|....
T Consensus 1 C~~C~~~I~~~~~~-~~~-~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKA-MGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEE-TTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEe-CCcEEEcccc--------ccCCCCCccCCCe
Confidence 66777777754443 223 6778998885 7999988776543
No 156
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=63.20 E-value=2.4 Score=37.58 Aligned_cols=9 Identities=44% Similarity=0.781 Sum_probs=0.0
Q ss_pred hCCceeecc
Q 025788 88 RLPTILFDE 96 (248)
Q Consensus 88 ~l~~~~~~~ 96 (248)
.+|...-++
T Consensus 190 GiPvIF~dE 198 (290)
T PF05454_consen 190 GIPVIFQDE 198 (290)
T ss_dssp ---------
T ss_pred CCceecccc
Confidence 366654443
No 157
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.10 E-value=2.4 Score=37.52 Aligned_cols=52 Identities=25% Similarity=0.662 Sum_probs=40.2
Q ss_pred cCCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 98 LRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 98 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.......|-||...+...... ..|.|.|++.|...|......||.|+..+.+
T Consensus 101 ~~~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 101 FQQDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccCCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 344567899999887743322 2599999999999999988899999876544
No 158
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=62.46 E-value=3.9 Score=25.75 Aligned_cols=43 Identities=30% Similarity=0.591 Sum_probs=28.8
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHh------cCCCCcccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH------SNTTCPLCR 147 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~Cr 147 (248)
.|.||.... .+..++.-..|+-.||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388998843 3444555556999999999865432 134788885
No 159
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.29 E-value=2.5 Score=38.76 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=0.0
Q ss_pred CCccccccccccc----------------CCcEEEcCCCCCcCCHhHHHHHHhc---------CCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEI----------------KEELLQVPSCKHVFHVECIHYWLHS---------NTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~----------------~~~~~~l~~C~H~fh~~Ci~~wl~~---------~~~CP~Cr~~~~~ 152 (248)
..+|++|+..-.. .-...+-| |||+--.....-|-+. +..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6789999965310 11234666 9999999999999752 3479999877753
No 160
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=60.88 E-value=4.2 Score=30.14 Aligned_cols=10 Identities=10% Similarity=0.092 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 025788 25 QAFIFSIPIL 34 (248)
Q Consensus 25 ~~i~~~i~il 34 (248)
.+.+++++++
T Consensus 65 li~lls~v~I 74 (101)
T PF06024_consen 65 LISLLSFVCI 74 (101)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 161
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=59.99 E-value=5.5 Score=27.09 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=8.7
Q ss_pred cCCHhHHHHHHh
Q 025788 127 VFHVECIHYWLH 138 (248)
Q Consensus 127 ~fh~~Ci~~wl~ 138 (248)
-||+.|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 162
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=59.79 E-value=11 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025788 26 AFIFSIPILFSIILFLLFYLFY 47 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~~~~~ 47 (248)
++.+.+++++++++..+.+++|
T Consensus 102 a~~~il~il~~i~is~~~~~~y 123 (139)
T PHA03099 102 PSPGIVLVLVGIIITCCLLSVY 123 (139)
T ss_pred hhhHHHHHHHHHHHHHHHHhhh
Confidence 3333344444444443333333
No 163
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=58.55 E-value=4.1 Score=27.55 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=18.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL 137 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 137 (248)
+...|.+|...|..-..-..-..||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3468999999997543333333699999998875443
No 164
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=58.43 E-value=7.8 Score=34.76 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=32.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
....|-.|.++.......+ ...|.|.||.+|-.---+.-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~-C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYR-CESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEE-chhccceeeccchHHHHhhhhcCCCcCC
Confidence 3456999977776554444 4459999999995433344568999963
No 165
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=57.84 E-value=14 Score=26.12 Aligned_cols=52 Identities=19% Similarity=0.516 Sum_probs=20.5
Q ss_pred CCCcccccccccccCCc--E-EEcCCCCCcCCHhHHHHHH-hcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEE--L-LQVPSCKHVFHVECIHYWL-HSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~--~-~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 152 (248)
....|.||-++...... + +-.-.|+--.|+.|.+-=. ..++.||-|+..+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 35689999988743221 2 1111477778999986654 368899999976643
No 166
>PF15179 Myc_target_1: Myc target protein 1
Probab=57.46 E-value=19 Score=29.64 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPILFSII 38 (248)
Q Consensus 22 ~~~~~i~~~i~il~~i~ 38 (248)
.++++|.++++|.++|-
T Consensus 20 ~lIlaF~vSm~iGLviG 36 (197)
T PF15179_consen 20 DLILAFCVSMAIGLVIG 36 (197)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35566777766654433
No 167
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.13 E-value=4.7 Score=35.46 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=26.6
Q ss_pred CCcccccccccccCCcEEEcCCC----CCcCCHhHHHHHHhc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSC----KHVFHVECIHYWLHS 139 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C----~H~fh~~Ci~~wl~~ 139 (248)
...|.+|.|.+++..-+ . | .|.||+.|-.+-++.
T Consensus 268 pLcCTLC~ERLEDTHFV---Q-CPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFV---Q-CPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCcee---e-cCCCcccceecccCHHHHHh
Confidence 46799999999865444 2 6 499999999988864
No 168
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=54.65 E-value=4.1 Score=38.31 Aligned_cols=26 Identities=12% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 26 AFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
++++++++++++++++++++.++++|
T Consensus 356 ~vVlgvavlivVv~viv~vc~~~rrr 381 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWVCLRCRRR 381 (439)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeeehhc
Confidence 33333333333333333333333333
No 169
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=54.41 E-value=2 Score=34.26 Aligned_cols=11 Identities=0% Similarity=-0.064 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 025788 26 AFIFSIPILFS 36 (248)
Q Consensus 26 ~i~~~i~il~~ 36 (248)
-++++|++.++
T Consensus 53 GvVVGVGg~il 63 (154)
T PF04478_consen 53 GVVVGVGGPIL 63 (154)
T ss_pred EEEecccHHHH
Confidence 34444444333
No 170
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.34 E-value=8.9 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=27.3
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH 138 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 138 (248)
.-+.|+.||..+.. .++.+ =||+|+.+||.+++.
T Consensus 42 ~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 34679999999884 45565 799999999999874
No 171
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=53.51 E-value=27 Score=33.18 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=8.0
Q ss_pred CHhHHHHHHhcC
Q 025788 129 HVECIHYWLHSN 140 (248)
Q Consensus 129 h~~Ci~~wl~~~ 140 (248)
++.|+..||+.+
T Consensus 291 ~kGsL~dyL~~n 302 (534)
T KOG3653|consen 291 PKGSLCDYLKAN 302 (534)
T ss_pred cCCcHHHHHHhc
Confidence 356777887654
No 172
>PTZ00046 rifin; Provisional
Probab=52.97 E-value=22 Score=32.41 Aligned_cols=31 Identities=10% Similarity=0.329 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 21 LKLYQAFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 21 ~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
..+...++++++++++++++.++++|.++++
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3444445555545555555555555444443
No 173
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=52.74 E-value=23 Score=32.27 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 21 LKLYQAFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 21 ~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
..+...++++++++++++++.++++|.++++
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3344444444444444455555544444433
No 174
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=52.48 E-value=6 Score=28.61 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=15.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025788 15 YPQAIQLKLYQAFIFSIPILFSIILFLLFYLFY 47 (248)
Q Consensus 15 ~p~~~~~~~~~~i~~~i~il~~i~~~~~~~~~~ 47 (248)
.|....+-|-.+..++|++++++.++.+.|.++
T Consensus 26 ~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 26 APSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred CCCCCCCcceeEeeeeehHHHHHHHHHHHHHHH
Confidence 333333444444555555555555555444433
No 175
>PLN02189 cellulose synthase
Probab=51.47 E-value=15 Score=38.01 Aligned_cols=50 Identities=18% Similarity=0.492 Sum_probs=34.9
Q ss_pred CCccccccccccc---CCcEEEcCCCCCcCCHhHHHHHH-hcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEI---KEELLQVPSCKHVFHVECIHYWL-HSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~ 151 (248)
...|.||-++... |+.-+-...|+--.|..|.+-=- +.++.||-|++.+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4589999999752 33223333577779999985432 35789999998875
No 176
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=51.13 E-value=12 Score=23.96 Aligned_cols=35 Identities=20% Similarity=0.498 Sum_probs=23.6
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHH
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL 137 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 137 (248)
..|.+|-..|.....-.....||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46889988876533222223599999999986554
No 177
>PF14851 FAM176: FAM176 family
Probab=51.08 E-value=28 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 23 LYQAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
+..+|+.+|-+.+++.++++...+-+
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34445555555555555555555555
No 178
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=50.81 E-value=27 Score=29.41 Aligned_cols=23 Identities=26% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPILFSIILFLLFY 44 (248)
Q Consensus 22 ~~~~~i~~~i~il~~i~~~~~~~ 44 (248)
|..+.+.++|+.++++++.++|+
T Consensus 127 K~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 127 KMAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444444
No 179
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=50.18 E-value=30 Score=21.60 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025788 23 LYQAFIFSIPILFSIILFLL 42 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~ 42 (248)
.|...++++++++.++..+.
T Consensus 3 ~wlt~iFsvvIil~If~~iG 22 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWIG 22 (49)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555544333
No 180
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=49.95 E-value=26 Score=27.46 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=4.1
Q ss_pred CCCchhh
Q 025788 14 LYPQAIQ 20 (248)
Q Consensus 14 l~p~~~~ 20 (248)
+.|....
T Consensus 16 wwP~a~G 22 (146)
T PF14316_consen 16 WWPLAPG 22 (146)
T ss_pred CCCccHH
Confidence 4666663
No 181
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.22 E-value=46 Score=22.25 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
+..+.-+++.+++.++++.++++.+
T Consensus 6 ~~~~a~a~~t~~~~l~fiavi~~ay 30 (60)
T COG4736 6 MRGFADAWGTIAFTLFFIAVIYFAY 30 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445544444444444433333
No 182
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=48.38 E-value=9.3 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 22 KLYQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 22 ~~~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
.+|.++-.+.++..+|+++++|+.+|.|-+.
T Consensus 55 g~ysawgagsfiatliillviffviy~re~~ 85 (150)
T PF06084_consen 55 GIYSAWGAGSFIATLIILLVIFFVIYSREEE 85 (150)
T ss_pred hhhhhcccchHHHHHHHHHHHhheeEecccc
Confidence 3445555555566666666677677765443
No 183
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=48.22 E-value=29 Score=34.89 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.7
Q ss_pred HHHHHHhhhcc
Q 025788 41 LLFYLFYLKRR 51 (248)
Q Consensus 41 ~~~~~~~~~~r 51 (248)
++++++|+|++
T Consensus 290 L~vLl~yCrrk 300 (807)
T PF10577_consen 290 LCVLLCYCRRK 300 (807)
T ss_pred HHHHHHhhhcc
Confidence 33334444443
No 184
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=48.13 E-value=50 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~ 49 (248)
+.++++.|++.+++++++.+|+.+++
T Consensus 191 lpvvIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 191 LPVVIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444444443
No 185
>PHA02902 putative IMV membrane protein; Provisional
Probab=48.09 E-value=33 Score=23.24 Aligned_cols=15 Identities=40% Similarity=0.706 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhcc
Q 025788 37 IILFLLFYLFYLKRR 51 (248)
Q Consensus 37 i~~~~~~~~~~~~~r 51 (248)
++++++++..|+|.+
T Consensus 14 ~Ivclliya~YrR~k 28 (70)
T PHA02902 14 IIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344444444455443
No 186
>PTZ00370 STEVOR; Provisional
Probab=48.05 E-value=25 Score=31.07 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 025788 27 FIFSIPILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 27 i~~~i~il~~i~~~~~~~~~~~~~ 50 (248)
..++++++.++++++.+|++.+|+
T Consensus 260 aalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444444444445555543
No 187
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=48.04 E-value=15 Score=26.85 Aligned_cols=11 Identities=0% Similarity=0.018 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 025788 24 YQAFIFSIPIL 34 (248)
Q Consensus 24 ~~~i~~~i~il 34 (248)
|.++..+-+++
T Consensus 42 WpyLA~GGG~i 52 (98)
T PF07204_consen 42 WPYLAAGGGLI 52 (98)
T ss_pred hHHhhccchhh
Confidence 44444443333
No 188
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=47.75 E-value=28 Score=24.81 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=4.4
Q ss_pred CchhhHHHHHH
Q 025788 16 PQAIQLKLYQA 26 (248)
Q Consensus 16 p~~~~~~~~~~ 26 (248)
+..+.-..++.
T Consensus 19 ~~~l~pn~lMt 29 (85)
T PF10717_consen 19 LNGLNPNTLMT 29 (85)
T ss_pred ccccChhHHHH
Confidence 34444443333
No 190
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=47.63 E-value=72 Score=23.62 Aligned_cols=10 Identities=0% Similarity=-0.516 Sum_probs=4.0
Q ss_pred HHHHHHHhhh
Q 025788 40 FLLFYLFYLK 49 (248)
Q Consensus 40 ~~~~~~~~~~ 49 (248)
.+...+..++
T Consensus 38 c~~~~~r~r~ 47 (102)
T PF11669_consen 38 CACRHRRRRR 47 (102)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 191
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=46.58 E-value=56 Score=19.52 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025788 23 LYQAFIFSIPILFSII 38 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~ 38 (248)
-|.+|.+.++++|+++
T Consensus 15 ~Wi~F~l~mi~vFi~l 30 (38)
T PF09125_consen 15 GWIAFALAMILVFIAL 30 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455555544444433
No 192
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=46.18 E-value=35 Score=27.09 Aligned_cols=15 Identities=20% Similarity=0.157 Sum_probs=8.6
Q ss_pred chhhHHHHHHHHHHH
Q 025788 17 QAIQLKLYQAFIFSI 31 (248)
Q Consensus 17 ~~~~~~~~~~i~~~i 31 (248)
++...+++.++.+.+
T Consensus 115 ~gY~nklilaisvtv 129 (154)
T PF14914_consen 115 YGYNNKLILAISVTV 129 (154)
T ss_pred ccccchhHHHHHHHH
Confidence 455566666555555
No 193
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=46.14 E-value=9.8 Score=37.19 Aligned_cols=30 Identities=13% Similarity=0.401 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025788 21 LKLYQAFIFSIPILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 21 ~~~~~~i~~~i~il~~i~~~~~~~~~~~~~ 50 (248)
..+|.++.+++.+++++++++++++.++|+
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 345655555555555555555555544443
No 194
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=45.94 E-value=6.8 Score=36.06 Aligned_cols=46 Identities=30% Similarity=0.616 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCC-----------cEEEcCCCCCcCCHhHHHHHHh------cCCCCccccCc
Q 025788 100 TRDSQCCVCLGEFEIKE-----------ELLQVPSCKHVFHVECIHYWLH------SNTTCPLCRCS 149 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~-----------~~~~l~~C~H~fh~~Ci~~wl~------~~~~CP~Cr~~ 149 (248)
.....|++=|..+.... .-+.+ +|||++-.+ .|-. ....||+||..
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeec-cccceeeec---ccccccccccccccCCCcccc
Confidence 34456887665553221 12344 499985533 5753 24589999975
No 195
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=45.69 E-value=6.9 Score=36.82 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccCC
Q 025788 18 AIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASVLSS 57 (248)
Q Consensus 18 ~~~~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r~~~~~~ 57 (248)
.-...-+.+++++++++++++++++.+.+++.+++++++.
T Consensus 345 ~~~~~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~ 384 (439)
T PF02480_consen 345 SPRTSRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQ 384 (439)
T ss_dssp ----------------------------------------
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHhheeeeehhcccc
Confidence 3344556677777777777777777777777777776654
No 196
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=45.65 E-value=12 Score=29.81 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 27 FIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 27 i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
+.++|.++++++++.+-+++++++|.
T Consensus 12 i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 12 ISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHHHHHHHHhcceEEEeeccC
Confidence 34444444444444433344444443
No 197
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=45.41 E-value=31 Score=25.40 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025788 21 LKLYQAFIFSIPILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 21 ~~~~~~i~~~i~il~~i~~~~~~~~~~~~~ 50 (248)
++-|.+|++.++.+++.+-+++-++|+.|.
T Consensus 15 L~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 15 LKPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455666666666555555555555555544
No 198
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=45.28 E-value=52 Score=21.25 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=4.5
Q ss_pred HHHHHhhhccCc
Q 025788 42 LFYLFYLKRRAS 53 (248)
Q Consensus 42 ~~~~~~~~~r~~ 53 (248)
++.++|.-+..+
T Consensus 19 l~~f~Wavk~GQ 30 (51)
T TIGR00847 19 LVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHccCC
Confidence 333334433333
No 199
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=44.94 E-value=56 Score=23.43 Aligned_cols=6 Identities=17% Similarity=0.119 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025788 27 FIFSIP 32 (248)
Q Consensus 27 i~~~i~ 32 (248)
++.+++
T Consensus 39 Vic~~l 44 (84)
T PF06143_consen 39 VICCFL 44 (84)
T ss_pred HHHHHH
Confidence 333333
No 200
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=44.04 E-value=52 Score=22.50 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhccCcc
Q 025788 38 ILFLLFYLFYLKRRASV 54 (248)
Q Consensus 38 ~~~~~~~~~~~~~r~~~ 54 (248)
++.++++-+|.|.+...
T Consensus 14 ii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 14 IIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHhcccccC
Confidence 34444555566555443
No 201
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=43.94 E-value=36 Score=25.74 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 025788 9 SEAPQLYP 16 (248)
Q Consensus 9 ~~~~~l~p 16 (248)
..+-||+|
T Consensus 36 ~~sQhlf~ 43 (128)
T PF15145_consen 36 AGSQHLFP 43 (128)
T ss_pred ccccCCCC
Confidence 33445555
No 202
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.57 E-value=37 Score=32.14 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
+.+++++++++++++.++.++..++++|.
T Consensus 133 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
T KOG2052|consen 133 LVAIILGPVVFLLLIAILTVLGCFYRKRR 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeeeec
Confidence 34455555555554544544444444333
No 203
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.45 E-value=42 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 025788 19 IQLKLYQAFIFSIPILFSI 37 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il~~i 37 (248)
..+.++..+.++++++++.
T Consensus 18 ~pl~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGW 36 (68)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 204
>PF15202 Adipogenin: Adipogenin
Probab=42.98 E-value=70 Score=21.93 Aligned_cols=28 Identities=18% Similarity=0.572 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
|.++.+.+.+.++++++++++.|...+.
T Consensus 16 flvfwlclpv~lllfl~ivwlrfllsqd 43 (81)
T PF15202_consen 16 FLVFWLCLPVGLLLFLLIVWLRFLLSQD 43 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4566667776666666666666666443
No 205
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=42.82 E-value=23 Score=19.80 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=10.3
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHH
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECI 133 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci 133 (248)
.|.+|.+.... .....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 57888877664 234444459989999885
No 206
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=42.63 E-value=7.7 Score=25.36 Aligned_cols=20 Identities=25% Similarity=0.703 Sum_probs=15.4
Q ss_pred cEEEcCCCCCcCCHhHHHHH
Q 025788 117 ELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 117 ~~~~l~~C~H~fh~~Ci~~w 136 (248)
..+..+.|+|.||..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34555458999999998888
No 207
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=41.92 E-value=9.8 Score=26.29 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=18.4
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..|+.|..++.... +|.+|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHH
Confidence 46888887765332 44444555433 234457888887764
No 208
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=41.80 E-value=36 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 025788 26 AFIFSIPILFSIILFLLFYLFYLKRRASV 54 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~~~~~~~~r~~~ 54 (248)
.+.++|..++++++++++.++.+.+|..+
T Consensus 298 ~~tfaIpl~Valll~~~La~imc~rrEg~ 326 (449)
T KOG4482|consen 298 LHTFAIPLGVALLLVLALAYIMCCRREGQ 326 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34555555556565555555555555443
No 209
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=41.62 E-value=4.4 Score=30.65 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=0.0
Q ss_pred HHhhhccCcc
Q 025788 45 LFYLKRRASV 54 (248)
Q Consensus 45 ~~~~~~r~~~ 54 (248)
.+|+|||...
T Consensus 44 CWYckRRSGY 53 (118)
T PF14991_consen 44 CWYCKRRSGY 53 (118)
T ss_dssp ----------
T ss_pred heeeeecchh
Confidence 4455555443
No 210
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=41.26 E-value=33 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.312 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 025788 24 YQAFIFSIPILFSII 38 (248)
Q Consensus 24 ~~~i~~~i~il~~i~ 38 (248)
|.+|-++..+++.++
T Consensus 33 W~aIGvi~gi~~~~l 47 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLL 47 (68)
T ss_pred chhHHHHHHHHHHHH
Confidence 343333333333333
No 211
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.18 E-value=23 Score=24.56 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=27.8
Q ss_pred ccccccccccCCcE-EEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 105 CCVCLGEFEIKEEL-LQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 105 C~ICl~~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
|--|-.++-.+..- ++.. =.|.||.+|.+.-|. ..||.|-..+..
T Consensus 8 CECCDrDLpp~s~dA~ICt-fEcTFCadCae~~l~--g~CPnCGGelv~ 53 (84)
T COG3813 8 CECCDRDLPPDSTDARICT-FECTFCADCAENRLH--GLCPNCGGELVA 53 (84)
T ss_pred CcccCCCCCCCCCceeEEE-EeeehhHhHHHHhhc--CcCCCCCchhhc
Confidence 44455555433322 2211 247899999987654 589999876653
No 212
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=40.98 E-value=68 Score=22.81 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 025788 20 QLKLYQAFIFSI 31 (248)
Q Consensus 20 ~~~~~~~i~~~i 31 (248)
.+|-+.++++.+
T Consensus 32 ~lKrlliivvVv 43 (93)
T PF08999_consen 32 NLKRLLIIVVVV 43 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccceEEEEEEee
Confidence 444334333333
No 213
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=40.76 E-value=65 Score=22.83 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 025788 27 FIFSIPILFSIIL 39 (248)
Q Consensus 27 i~~~i~il~~i~~ 39 (248)
++++++++|++++
T Consensus 11 ~v~GM~~VF~fL~ 23 (82)
T TIGR01195 11 TVLGMGIVFLFLS 23 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3344443333333
No 214
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=40.59 E-value=5 Score=35.53 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=26.7
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS 139 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~ 139 (248)
..|.+|+++|..+....... |.-+||..|+-.|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhh-cccccccccccccccc
Confidence 37899999987655555554 6668888888888753
No 215
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.59 E-value=20 Score=35.43 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=31.8
Q ss_pred cccccccccccCCcEEEcCCCCC-cCCHhHHHHHHh--c----CCCCccccCccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKH-VFHVECIHYWLH--S----NTTCPLCRCSIV 151 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~wl~--~----~~~CP~Cr~~~~ 151 (248)
.|+||-..+. ....- .|+| ..|..|...... . ...||+||..+.
T Consensus 2 ~c~ic~~s~~---~~~~~-s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRG-SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcc---ccccc-cccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999987765 33333 5999 799999877652 3 456899998664
No 216
>PRK01844 hypothetical protein; Provisional
Probab=40.52 E-value=70 Score=22.22 Aligned_cols=7 Identities=0% Similarity=0.041 Sum_probs=2.8
Q ss_pred CCHHHHh
Q 025788 81 WKGEIKD 87 (248)
Q Consensus 81 ~~~~~~~ 87 (248)
++++.++
T Consensus 39 ine~mir 45 (72)
T PRK01844 39 INEQMLK 45 (72)
T ss_pred CCHHHHH
Confidence 3344443
No 217
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=40.48 E-value=55 Score=28.33 Aligned_cols=6 Identities=17% Similarity=0.800 Sum_probs=2.7
Q ss_pred HHHHHh
Q 025788 133 IHYWLH 138 (248)
Q Consensus 133 i~~wl~ 138 (248)
.+.|+.
T Consensus 216 f~~W~~ 221 (247)
T COG1622 216 FDAWVA 221 (247)
T ss_pred HHHHHH
Confidence 444443
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=39.93 E-value=24 Score=35.24 Aligned_cols=46 Identities=33% Similarity=0.645 Sum_probs=29.3
Q ss_pred CCCccccccccccc----C-----CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEI----K-----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~----~-----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
.+..|+-|...|.. | ...-+.|.|.|.-|..=|. +...||+|...+
T Consensus 1130 ~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1130 YDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred cCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 45567777766631 1 1223455699988877663 357899998654
No 219
>PRK00523 hypothetical protein; Provisional
Probab=39.45 E-value=47 Score=23.08 Aligned_cols=7 Identities=0% Similarity=-0.069 Sum_probs=2.9
Q ss_pred CCHHHHh
Q 025788 81 WKGEIKD 87 (248)
Q Consensus 81 ~~~~~~~ 87 (248)
++++.++
T Consensus 40 ine~mir 46 (72)
T PRK00523 40 ITENMIR 46 (72)
T ss_pred CCHHHHH
Confidence 3444443
No 220
>PRK05978 hypothetical protein; Provisional
Probab=39.35 E-value=23 Score=28.22 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=20.7
Q ss_pred CcCCHhHHHHHHhcCCCCccccCccccCCCCCC
Q 025788 126 HVFHVECIHYWLHSNTTCPLCRCSIVPITKLYN 158 (248)
Q Consensus 126 H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 158 (248)
+.|+ .+++-+..||.|-.++...+...-
T Consensus 43 ~LF~-----g~Lkv~~~C~~CG~~~~~~~a~Dg 70 (148)
T PRK05978 43 KLFR-----AFLKPVDHCAACGEDFTHHRADDL 70 (148)
T ss_pred cccc-----cccccCCCccccCCccccCCcccc
Confidence 6775 677888999999988766544433
No 221
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=38.78 E-value=15 Score=32.37 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=7.9
Q ss_pred CCCCCCCchhhHHHHH
Q 025788 10 EAPQLYPQAIQLKLYQ 25 (248)
Q Consensus 10 ~~~~l~p~~~~~~~~~ 25 (248)
+.+...+..-..++|.
T Consensus 199 ~~~~~~~~~~~~~~W~ 214 (278)
T PF06697_consen 199 PPPPGAPPRKRSWWWK 214 (278)
T ss_pred CCCcccccCCcceeEE
Confidence 3333344455555665
No 222
>PLN02436 cellulose synthase A
Probab=38.37 E-value=32 Score=35.88 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=34.4
Q ss_pred CCcccccccccc---cCCcEEEcCCCCCcCCHhHHHHHH-hcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFE---IKEELLQVPSCKHVFHVECIHYWL-HSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~---~~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~ 151 (248)
...|.||-++.. +|+.-+-...|+--.|..|.+-=- +.++.||-|++.+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 458999999973 233222223477779999985433 35789999998875
No 223
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=38.30 E-value=69 Score=28.25 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 025788 27 FIFSIPILFSIILFLLFYLFYLKRRASV 54 (248)
Q Consensus 27 i~~~i~il~~i~~~~~~~~~~~~~r~~~ 54 (248)
+.++++++++++++.+++.+++|+|...
T Consensus 234 lAiALG~v~ll~l~Gii~~~~~r~~~~~ 261 (281)
T PF12768_consen 234 LAIALGTVFLLVLIGIILAYIRRRRQGY 261 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3334444444444444444444444433
No 224
>PHA02650 hypothetical protein; Provisional
Probab=38.24 E-value=51 Score=23.26 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 025788 25 QAFIFSIPILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~~~~~~~ 50 (248)
....+.|++++.+++++++++.|++-
T Consensus 47 ~~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 47 FNGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555553
No 225
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.06 E-value=40 Score=25.11 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=18.2
Q ss_pred CCcCCHhHHHHHHhc---------CCCCccccC
Q 025788 125 KHVFHVECIHYWLHS---------NTTCPLCRC 148 (248)
Q Consensus 125 ~H~fh~~Ci~~wl~~---------~~~CP~Cr~ 148 (248)
.=.||..||..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 556999999888742 236999986
No 226
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.16 E-value=9.8 Score=24.53 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=6.1
Q ss_pred CCccccCccccC
Q 025788 142 TCPLCRCSIVPI 153 (248)
Q Consensus 142 ~CP~Cr~~~~~~ 153 (248)
.||+|.+++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899998887543
No 227
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=36.78 E-value=1.5e+02 Score=21.19 Aligned_cols=15 Identities=0% Similarity=-0.028 Sum_probs=8.8
Q ss_pred CCCCHHHHhhCCcee
Q 025788 79 IGWKGEIKDRLPTIL 93 (248)
Q Consensus 79 ~~~~~~~~~~l~~~~ 93 (248)
..++.+.+++|-.+.
T Consensus 50 D~lTpDQVrAlHRlv 64 (92)
T PHA02681 50 DKMTDDQVRAFHALV 64 (92)
T ss_pred ccCCHHHHHHHHHHH
Confidence 456666676655443
No 228
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=36.76 E-value=29 Score=30.34 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=26.7
Q ss_pred CcccccccccccCCcEEEcC-CCCCcCCHhHHHHHH-hcCCCCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWL-HSNTTCPLC 146 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl-~~~~~CP~C 146 (248)
..|.||++...+|-.-.-|. .=.=.=|++|+++|- ..+..||.-
T Consensus 31 sfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 31 SFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred eecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCcc
Confidence 46888887765443211111 112246899999994 568889843
No 229
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=36.62 E-value=52 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
|.+.++++.++++++.++++.+-+...|.
T Consensus 35 WNysiL~Ls~vvlvi~~~LLgrsi~ANRn 63 (125)
T PF15048_consen 35 WNYSILALSFVVLVISFFLLGRSIQANRN 63 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHhccc
Confidence 44555566555555555555554444443
No 230
>PHA03054 IMV membrane protein; Provisional
Probab=36.59 E-value=66 Score=22.18 Aligned_cols=14 Identities=21% Similarity=0.652 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 025788 31 IPILFSIILFLLFY 44 (248)
Q Consensus 31 i~il~~i~~~~~~~ 44 (248)
+++++++++++.++
T Consensus 55 l~~v~~~~l~~flY 68 (72)
T PHA03054 55 FFIVLILLLLIYLY 68 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 231
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=36.33 E-value=4.4 Score=35.77 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=19.6
Q ss_pred CCcccccccccccCCcEEEcC---CCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVP---SCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~---~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
...|+||-..-..+ +..-. +-.|.+|.-|-..|-.....||.|-.
T Consensus 172 ~g~CPvCGs~P~~s--~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 172 RGYCPVCGSPPVLS--VLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp -SS-TTT---EEEE--EEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CCcCCCCCCcCceE--EEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 46899998764321 11111 12355777788899767778999954
No 232
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.00 E-value=6.4 Score=34.65 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=35.8
Q ss_pred CCcccccccccccCC--c-EEEcCC-------CCCcCCHhHHHHHHhc-CCCCccccCc
Q 025788 102 DSQCCVCLGEFEIKE--E-LLQVPS-------CKHVFHVECIHYWLHS-NTTCPLCRCS 149 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~--~-~~~l~~-------C~H~fh~~Ci~~wl~~-~~~CP~Cr~~ 149 (248)
+..|.||...|...+ . .+++.. |+|..+..|++.-+.. ...||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 357999999998432 2 233323 9999999999998754 4689999875
No 233
>PHA02819 hypothetical protein; Provisional
Probab=35.56 E-value=63 Score=22.30 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 025788 29 FSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 29 ~~i~il~~i~~~~~~~~~~~ 48 (248)
+.|++++.+++++++++.|+
T Consensus 48 ~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 48 YLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333343
No 234
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=35.27 E-value=21 Score=21.11 Aligned_cols=26 Identities=35% Similarity=0.842 Sum_probs=15.3
Q ss_pred cccccccccccCCc-------EEEcCCCCCcCC
Q 025788 104 QCCVCLGEFEIKEE-------LLQVPSCKHVFH 129 (248)
Q Consensus 104 ~C~ICl~~~~~~~~-------~~~l~~C~H~fh 129 (248)
+|+=|...|..+++ ...-+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57777777765543 123335777764
No 235
>PHA03255 BDLF3; Provisional
Probab=35.18 E-value=87 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025788 19 IQLKLYQAFIFSIPILFSIILFLLFYL 45 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il~~i~~~~~~~~ 45 (248)
..+-+|.++++++-++.+|++|..-+.
T Consensus 180 ~glplwtlvfvgltflmlilifaagim 206 (234)
T PHA03255 180 YGLPLWTLVFVGLTFLMLILIFAAGLM 206 (234)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 456678888888777665555544433
No 236
>PHA03030 hypothetical protein; Provisional
Probab=35.13 E-value=34 Score=25.41 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=3.1
Q ss_pred HHHHHhhh
Q 025788 42 LFYLFYLK 49 (248)
Q Consensus 42 ~~~~~~~~ 49 (248)
++++||.+
T Consensus 15 l~iffYI~ 22 (122)
T PHA03030 15 LFIFFYIR 22 (122)
T ss_pred HHHHHHhe
Confidence 33334443
No 237
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=34.88 E-value=38 Score=31.42 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=4.2
Q ss_pred HHHHHHhhhcc
Q 025788 41 LLFYLFYLKRR 51 (248)
Q Consensus 41 ~~~~~~~~~~r 51 (248)
+.|+++..|||
T Consensus 404 ~~~~~~v~rrr 414 (436)
T PTZ00208 404 VAFFIMVKRRR 414 (436)
T ss_pred HHhheeeeecc
Confidence 33433333333
No 238
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=34.83 E-value=79 Score=22.61 Aligned_cols=23 Identities=9% Similarity=0.375 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025788 24 YQAFIFSIPILFSIILFLLFYLF 46 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~ 46 (248)
+.+.+++++++++.++++++..+
T Consensus 11 ~~L~vlGmg~VflfL~iLi~~~~ 33 (84)
T COG3630 11 ITLMVLGMGFVFLFLSILIYAMR 33 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444443
No 239
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=34.75 E-value=28 Score=33.59 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
....|.+|+..+...+....+-.|.|.++..|+..|=.....|+.|++.+....
T Consensus 259 ~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~ 312 (553)
T KOG4430|consen 259 NKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTIS 312 (553)
T ss_pred cccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccc
Confidence 456799999998877777666667899999999999877789999988775443
No 240
>PLN02248 cellulose synthase-like protein
Probab=34.42 E-value=41 Score=35.23 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCcccc--ccccccc-CCcEEEcC-CCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCV--CLGEFEI-KEELLQVP-SCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~I--Cl~~~~~-~~~~~~l~-~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
+..|++ |-..... .....++| +|++..|.+|...-++....||-|+.++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1135)
T PLN02248 124 GSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSGGICPGCKEPYKV 178 (1135)
T ss_pred CCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcCCCCCCCcccccc
Confidence 456775 4333221 11223444 588899999999988888899999988744
No 241
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=33.94 E-value=96 Score=22.21 Aligned_cols=20 Identities=10% Similarity=0.464 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025788 25 QAFIFSIPILFSIILFLLFY 44 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~ 44 (248)
.+++++++++|+++++++++
T Consensus 13 ~lm~~GM~~VF~fL~lLi~~ 32 (85)
T PRK03814 13 TLMLTGMGVVFIFLTLLVYL 32 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444544444444444333
No 242
>PHA03049 IMV membrane protein; Provisional
Probab=33.72 E-value=95 Score=21.16 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhccCc
Q 025788 38 ILFLLFYLFYLKRRAS 53 (248)
Q Consensus 38 ~~~~~~~~~~~~~r~~ 53 (248)
++.++++-+|.|.+..
T Consensus 14 Ii~lIvYgiYnkk~~~ 29 (68)
T PHA03049 14 IIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHhccccc
Confidence 3344445555555543
No 243
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=33.45 E-value=44 Score=34.93 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=34.0
Q ss_pred CCccccccccccc---CCcEEEcCCCCCcCCHhHHHHH-HhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEI---KEELLQVPSCKHVFHVECIHYW-LHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~---~~~~~~l~~C~H~fh~~Ci~~w-l~~~~~CP~Cr~~~~ 151 (248)
...|.||-++... |+--+-.-+|+-=.|..|.+-= -+.++.||-|++.+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4589999998743 2222222247777999998432 245889999998775
No 244
>PHA02975 hypothetical protein; Provisional
Probab=33.35 E-value=72 Score=21.87 Aligned_cols=18 Identities=28% Similarity=0.515 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025788 31 IPILFSIILFLLFYLFYL 48 (248)
Q Consensus 31 i~il~~i~~~~~~~~~~~ 48 (248)
+++++.+++++++.+.|+
T Consensus 48 ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 48 IIFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344333333334444443
No 245
>PHA02844 putative transmembrane protein; Provisional
Probab=32.86 E-value=78 Score=22.07 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 025788 29 FSIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 29 ~~i~il~~i~~~~~~~~~~~~ 49 (248)
..|++++.+++++++.+.|++
T Consensus 50 ~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 50 IWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344333333333344444443
No 246
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=32.82 E-value=23 Score=34.33 Aligned_cols=36 Identities=22% Similarity=0.589 Sum_probs=23.7
Q ss_pred CCCCcccccccccccC------C----cEEEcCCCCCcCCHhHHHHH
Q 025788 100 TRDSQCCVCLGEFEIK------E----ELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~------~----~~~~l~~C~H~fh~~Ci~~w 136 (248)
+....|+||.|.|+.- . ..+.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 3456899999999631 1 122332 5789999998654
No 247
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=32.78 E-value=10 Score=33.38 Aligned_cols=43 Identities=16% Similarity=0.552 Sum_probs=28.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
...|+-|.+-+...+-+|.- =.|+||.+|+ .|-+|++.+...+
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF--------~C~iC~R~L~TGd 134 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCF--------ACFICKRQLATGD 134 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhh--------hhHhhhcccccCC
Confidence 45688888877655444433 5789999996 5777776665433
No 248
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.74 E-value=7.6 Score=20.65 Aligned_cols=6 Identities=50% Similarity=1.353 Sum_probs=2.6
Q ss_pred CCcccc
Q 025788 142 TCPLCR 147 (248)
Q Consensus 142 ~CP~Cr 147 (248)
.||.|-
T Consensus 15 fC~~CG 20 (23)
T PF13240_consen 15 FCPNCG 20 (23)
T ss_pred chhhhC
Confidence 344443
No 249
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=32.50 E-value=65 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 025788 29 FSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 29 ~~i~il~~i~~~~~~~~~~~ 48 (248)
+.++.++.+++++++.+.|+
T Consensus 50 ~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33433333333333333333
No 250
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=32.35 E-value=14 Score=31.21 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.5
Q ss_pred hhhhhhcc
Q 025788 187 QQEQQQLD 194 (248)
Q Consensus 187 ~~~~q~~~ 194 (248)
.+-.|+..
T Consensus 180 H~~iQeLP 187 (221)
T PF08374_consen 180 HHIIQELP 187 (221)
T ss_pred chhhhhcC
Confidence 34444443
No 251
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=32.35 E-value=55 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=10.1
Q ss_pred CCHhHHHHHH--hcCCCCcc
Q 025788 128 FHVECIHYWL--HSNTTCPL 145 (248)
Q Consensus 128 fh~~Ci~~wl--~~~~~CP~ 145 (248)
...+-+..|| .++..+|+
T Consensus 124 ~~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 124 LPGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred cccccHHHHHHHHHhccCCc
Confidence 4456677777 34444543
No 252
>PRK14710 hypothetical protein; Provisional
Probab=31.84 E-value=46 Score=22.99 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025788 27 FIFSIPILFSIILFLLF 43 (248)
Q Consensus 27 i~~~i~il~~i~~~~~~ 43 (248)
+++.+.+++++++++..
T Consensus 12 ~ififaiii~v~lcv~t 28 (86)
T PRK14710 12 IIFIFAIIIIVVLCVIT 28 (86)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33333333333333333
No 253
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.74 E-value=23 Score=20.35 Aligned_cols=19 Identities=26% Similarity=0.749 Sum_probs=11.2
Q ss_pred CCCcCCHhHHHHHHhcCCCCccccC
Q 025788 124 CKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 124 C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
|||++-..- ....||+|..
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 666654332 2347999965
No 254
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=31.66 E-value=44 Score=28.38 Aligned_cols=15 Identities=20% Similarity=0.199 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 025788 21 LKLYQAFIFSIPILF 35 (248)
Q Consensus 21 ~~~~~~i~~~i~il~ 35 (248)
..++-++|.++++|+
T Consensus 13 N~iLNiaI~IV~lLI 27 (217)
T PF07423_consen 13 NKILNIAIGIVSLLI 27 (217)
T ss_pred hhhHHHHHHHHHHHH
Confidence 445555566665443
No 255
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=20 Score=25.98 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.7
Q ss_pred cCCHhHHHHHHh
Q 025788 127 VFHVECIHYWLH 138 (248)
Q Consensus 127 ~fh~~Ci~~wl~ 138 (248)
-||..|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 256
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=31.48 E-value=48 Score=26.46 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=12.7
Q ss_pred ceeecc-ccCCCCCcccccccccc
Q 025788 91 TILFDE-ELRTRDSQCCVCLGEFE 113 (248)
Q Consensus 91 ~~~~~~-~~~~~~~~C~ICl~~~~ 113 (248)
.++|+. +...++...++|+-+-.
T Consensus 85 vvRYnAF~dmGg~LSFslAlLD~~ 108 (151)
T PF14584_consen 85 VVRYNAFEDMGGDLSFSLALLDDN 108 (151)
T ss_pred EEEccCcccccccceeeeEEEeCC
Confidence 344442 22345677888876644
No 257
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=31.15 E-value=30 Score=25.45 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=21.6
Q ss_pred CCCcccccccccccCCcEEEcC--CCCCcCCHhHHHH
Q 025788 101 RDSQCCVCLGEFEIKEELLQVP--SCKHVFHVECIHY 135 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~ 135 (248)
....|.||.... |. ++.-. .|...||..|...
T Consensus 54 ~~~~C~iC~~~~--G~-~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSG--GA-CIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCC--ce-eEEcCCCCCCcCCCHHHHHH
Confidence 356899998872 22 22222 3888999999855
No 258
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.93 E-value=42 Score=24.58 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=27.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH 138 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 138 (248)
+..|.||-+.+..|+.-.+.+ .-..|++|+..=..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee--CCcchHHHHHHHHh
Confidence 457999999999998887775 44589999876543
No 259
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=30.56 E-value=33 Score=26.50 Aligned_cols=32 Identities=9% Similarity=0.268 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 21 LKLYQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 21 ~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
.+++..+++++++++++...++|..+..+++.
T Consensus 80 ~~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~ 111 (129)
T PF15099_consen 80 ISIFGPVLLSLGLMLLACSALCWKPIIRKKKK 111 (129)
T ss_pred hhhehHHHHHHHHHHHHhhhheehhhhHhHHH
Confidence 45566666666655544444555444444443
No 260
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=30.55 E-value=73 Score=23.41 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 025788 26 AFIFSIPILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~~~~~~~~ 50 (248)
.+++.+++++++-+.++.++.|+.|
T Consensus 6 ~vl~l~g~llligftivvl~vyfgr 30 (126)
T PF13120_consen 6 MVLLLIGTLLLIGFTIVVLLVYFGR 30 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhhheecc
Confidence 3334444444444444444444433
No 261
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.44 E-value=22 Score=28.51 Aligned_cols=45 Identities=22% Similarity=0.432 Sum_probs=29.6
Q ss_pred cccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 106 CVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 106 ~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
.||+.--...+....-|.=.+.||..|-.+-.. .||.|..+|.-.
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCc
Confidence 466655544444444443446799999888765 699999887543
No 262
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=29.98 E-value=91 Score=23.77 Aligned_cols=19 Identities=11% Similarity=-0.267 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025788 25 QAFIFSIPILFSIILFLLF 43 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~ 43 (248)
..+|-++.++++..+....
T Consensus 87 p~VIGGLcaL~LaamGA~~ 105 (126)
T PF03229_consen 87 PLVIGGLCALTLAAMGAGA 105 (126)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 4444444444433333333
No 263
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=29.91 E-value=33 Score=24.19 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHH
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY 135 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 135 (248)
....|.+|....-..-... .++|.-.||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~-~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCS-HPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEEe-CCCCCcEEChHHHcc
Confidence 3568999987633222222 225999999999754
No 264
>PLN02195 cellulose synthase A
Probab=29.71 E-value=65 Score=33.40 Aligned_cols=51 Identities=18% Similarity=0.455 Sum_probs=34.9
Q ss_pred CCCcccccccccccC---CcEEEcCCCCCcCCHhHHHHHH-hcCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEIK---EELLQVPSCKHVFHVECIHYWL-HSNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~ 151 (248)
....|.||-++.... +.-+-.-.|+--.|+.|.+-=- +.++.||-|+..+.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 345899999876432 2222222588889999984422 35789999998876
No 265
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.61 E-value=21 Score=30.23 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 025788 25 QAFIFSIP 32 (248)
Q Consensus 25 ~~i~~~i~ 32 (248)
.+++.+++
T Consensus 41 iaiVAG~~ 48 (221)
T PF08374_consen 41 IAIVAGIM 48 (221)
T ss_pred eeeecchh
Confidence 33444443
No 266
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=29.43 E-value=28 Score=26.37 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=27.2
Q ss_pred CCCccccccccccc--CCcEEEcCCCCCcCCHhHHHHHHhcCC--CCccccC
Q 025788 101 RDSQCCVCLGEFEI--KEELLQVPSCKHVFHVECIHYWLHSNT--TCPLCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~ 148 (248)
++..|++|...|.. +.. .....|+|.+|..|-.. ..+.. .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~-~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG-RVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC-EEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCC-CcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 56799999987643 223 34445999999998543 11111 4777754
No 267
>PHA02692 hypothetical protein; Provisional
Probab=29.04 E-value=98 Score=21.33 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 025788 31 IPILFSIILFLLFY 44 (248)
Q Consensus 31 i~il~~i~~~~~~~ 44 (248)
+++++++++++.+|
T Consensus 53 ~~~~~~~vll~flY 66 (70)
T PHA02692 53 LIAAAIGVLLCFHY 66 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 268
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=28.59 E-value=47 Score=24.68 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=26.9
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH 138 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 138 (248)
-.|.||-.++..|+.-.++.+ -..|+.|+..=..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHHHh
Confidence 369999999999888777763 5689999977543
No 269
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.41 E-value=1.5e+02 Score=18.32 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPILFSIIL 39 (248)
Q Consensus 22 ~~~~~i~~~i~il~~i~~ 39 (248)
.+|..+.+++++++.+++
T Consensus 6 yVW~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIV 23 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666655554443333
No 270
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=28.31 E-value=19 Score=29.94 Aligned_cols=34 Identities=6% Similarity=0.096 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 19 IQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
+....|..|.++++++++.++..+++.+++.+..
T Consensus 96 lavh~~iTITvSlImViaAliTtlvlK~C~~~s~ 129 (205)
T PF15298_consen 96 LAVHQIITITVSLIMVIAALITTLVLKNCCAQSQ 129 (205)
T ss_pred CCceEEEEEeeehhHHHHHhhhhhhhhhhhhhhc
Confidence 3333445555666555555555555565554433
No 271
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.30 E-value=58 Score=33.98 Aligned_cols=51 Identities=22% Similarity=0.490 Sum_probs=34.7
Q ss_pred CCCccccccccccc---CCcEEEcCCCCCcCCHhHHHHHH-hcCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEI---KEELLQVPSCKHVFHVECIHYWL-HSNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~ 151 (248)
....|.||-++... |+.-+-.-.|+--.|..|.+-=. +.++.||-|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 35689999998743 22222222477779999985433 35789999998875
No 272
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.24 E-value=25 Score=31.47 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCCcccccccccccCCcEEEc-C--CCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQV-P--SCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l-~--~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
....|++|-..-... ++.+ . +=.|.+|..|-..|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 357899998764211 1111 0 11244666788888777788999974
No 273
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=28.13 E-value=24 Score=35.69 Aligned_cols=47 Identities=15% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH-h-----cCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL-H-----SNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-~-----~~~~CP~Cr~~ 149 (248)
....|-.|...... ..-+.+.|++.||..|+..|. . .-..|++||..
T Consensus 228 ~~~mC~~C~~tlfn--~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 228 IREMCDRCETTLFN--IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred cchhhhhhcccccc--eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 34578888766442 344556799999999999995 1 12357776653
No 274
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=27.91 E-value=19 Score=33.04 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCcc
Q 025788 20 QLKLYQAFIFSIPILFSIILFLL-FYLFYLKRRASV 54 (248)
Q Consensus 20 ~~~~~~~i~~~i~il~~i~~~~~-~~~~~~~~r~~~ 54 (248)
|..++.+-.++|+++|+.+++++ +|+.-+|+|.+.
T Consensus 6 QkrVLTITgIcvaLlVVGi~Cvv~aYCKTKKQRkkl 41 (404)
T PF02158_consen 6 QKRVLTITGICVALLVVGIVCVVDAYCKTKKQRKKL 41 (404)
T ss_dssp ------------------------------------
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44455555555555565566666 655555555443
No 275
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=27.80 E-value=1.7e+02 Score=20.47 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 25 QAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
.++.++++++|+..+-+++.+...++..
T Consensus 6 l~~plivf~ifVap~WL~lHY~sk~~~~ 33 (75)
T PF06667_consen 6 LFVPLIVFMIFVAPIWLILHYRSKWKSS 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3344444444444444444444455554
No 276
>PF15102 TMEM154: TMEM154 protein family
Probab=27.42 E-value=23 Score=28.07 Aligned_cols=9 Identities=22% Similarity=0.796 Sum_probs=5.2
Q ss_pred HhHHHHHHh
Q 025788 130 VECIHYWLH 138 (248)
Q Consensus 130 ~~Ci~~wl~ 138 (248)
-+=+++|+.
T Consensus 127 meeldkwm~ 135 (146)
T PF15102_consen 127 MEELDKWMN 135 (146)
T ss_pred HHHHHhHHH
Confidence 344667764
No 277
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=27.33 E-value=59 Score=25.25 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
..+|+++.+.+++..+++.++.+|+|++.
T Consensus 103 ~~~il~il~~i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 103 SPGIVLVLVGIIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred hhHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 34444444445555666677777777654
No 278
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=27.14 E-value=44 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=18.9
Q ss_pred CcccccccccccCCcEEEcCCCCCcC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVF 128 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~f 128 (248)
..|++|...+...+...... .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 47999999997666555555 67887
No 279
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=27.11 E-value=91 Score=26.51 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRRASV 54 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r~~~ 54 (248)
|.++.+++.++++.++.+..++...+-|.++
T Consensus 187 W~i~~~v~~i~~i~vv~i~~irR~i~lkYrY 217 (226)
T PHA02662 187 WTLLLAVAAVTVLGVVAVSLLRRALRIRFRY 217 (226)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhheeeee
Confidence 3333333323333333334443333334443
No 280
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=27.01 E-value=96 Score=23.12 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=12.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 025788 17 QAIQLKLYQAFIFSIPILFSIILF 40 (248)
Q Consensus 17 ~~~~~~~~~~i~~~i~il~~i~~~ 40 (248)
++++.-.|+++.+.|++++++++.
T Consensus 62 kDvS~~F~L~~~~ti~lv~~~~~~ 85 (103)
T PF12955_consen 62 KDVSVPFWLFAGFTIALVVLVAGA 85 (103)
T ss_pred ccccchhhHHHHHHHHHHHHHHHH
Confidence 455555555555555444433333
No 281
>PF15345 TMEM51: Transmembrane protein 51
Probab=27.01 E-value=14 Score=31.48 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 025788 19 IQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRAS 53 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il~~i~~~~~~~~~~~~~r~~ 53 (248)
...|-|.+.++.+++.++++++-+++-+.-|||++
T Consensus 53 ~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 53 LKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred ccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555554444443
No 282
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=26.98 E-value=54 Score=25.77 Aligned_cols=14 Identities=29% Similarity=0.524 Sum_probs=10.6
Q ss_pred CCCCccccCccccC
Q 025788 140 NTTCPLCRCSIVPI 153 (248)
Q Consensus 140 ~~~CP~Cr~~~~~~ 153 (248)
...||.|...+...
T Consensus 123 ~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 123 TFTCPRCGEELEED 136 (147)
T ss_pred cEECCCCCCEEEEc
Confidence 36899999887553
No 283
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.81 E-value=19 Score=33.85 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=27.2
Q ss_pred CcccccccccccCCcEEEc----CCCCCcCCHhHHHHHHhc
Q 025788 103 SQCCVCLGEFEIKEELLQV----PSCKHVFHVECIHYWLHS 139 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l----~~C~H~fh~~Ci~~wl~~ 139 (248)
..|+.|....+.+...... ..|+|.||..|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 3599999998877643321 139999999999888753
No 284
>PLN02400 cellulose synthase
Probab=26.75 E-value=48 Score=34.66 Aligned_cols=50 Identities=16% Similarity=0.494 Sum_probs=33.5
Q ss_pred CCcccccccccccC---CcEEEcCCCCCcCCHhHHHHH-HhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIK---EELLQVPSCKHVFHVECIHYW-LHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~---~~~~~l~~C~H~fh~~Ci~~w-l~~~~~CP~Cr~~~~ 151 (248)
...|.||-++.... +--+-.-.|+-=.|..|.+-= -+.++.||-|+..+.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 45899999987432 222222247777899998432 235789999998875
No 285
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=26.74 E-value=1.3e+02 Score=25.19 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.1
Q ss_pred HHHHHH
Q 025788 25 QAFIFS 30 (248)
Q Consensus 25 ~~i~~~ 30 (248)
.+++++
T Consensus 55 ~l~w~~ 60 (204)
T PRK09174 55 QLLWLA 60 (204)
T ss_pred HHHHHH
Confidence 333333
No 286
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=26.69 E-value=1.1e+02 Score=28.38 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 28 IFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 28 ~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
.++|.+++++++++++.++.+.+|.
T Consensus 288 tl~iPl~i~llL~llLs~Imc~rRE 312 (386)
T PF05510_consen 288 TLAIPLIIALLLLLLLSYIMCCRRE 312 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHheechH
Confidence 3344444444444444444444443
No 287
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=26.33 E-value=1e+02 Score=22.01 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 17 QAIQLKLYQAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 17 ~~~~~~~~~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
..++++-|..+...+-++++++.+++++++..
T Consensus 41 Y~~sl~SFsSIW~iiN~~il~~A~~vyLry~C 72 (82)
T PF03554_consen 41 YEPSLSSFSSIWAIINVVILLCAFCVYLRYLC 72 (82)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777666655555555555444
No 288
>PRK11901 hypothetical protein; Reviewed
Probab=26.05 E-value=71 Score=28.79 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025788 26 AFIFSIPILFSIILFLLF 43 (248)
Q Consensus 26 ~i~~~i~il~~i~~~~~~ 43 (248)
.++++|+|||+|++++.+
T Consensus 37 h~MiGiGilVLlLLIi~I 54 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAI 54 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556555554444443
No 289
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=25.87 E-value=94 Score=22.93 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=7.6
Q ss_pred chhhHHHHHHHHHHHHH
Q 025788 17 QAIQLKLYQAFIFSIPI 33 (248)
Q Consensus 17 ~~~~~~~~~~i~~~i~i 33 (248)
..++..++..+++.+++
T Consensus 10 ~~ie~sl~~~~~~l~~~ 26 (108)
T PF07219_consen 10 YRIETSLWVALILLLLL 26 (108)
T ss_pred EEEEeeHHHHHHHHHHH
Confidence 34444555444444433
No 290
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=25.76 E-value=1.1e+02 Score=20.37 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 025788 19 IQLKLYQAFIFSIPIL 34 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il 34 (248)
+..+.|..+.++..++
T Consensus 10 FtskFW~YFtLi~M~l 25 (64)
T PF03579_consen 10 FTSKFWTYFTLIFMML 25 (64)
T ss_pred eccccchHHHHHHHHH
Confidence 3445666655554433
No 291
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=25.59 E-value=1.3e+02 Score=21.31 Aligned_cols=14 Identities=7% Similarity=0.524 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 025788 28 IFSIPILFSIILFL 41 (248)
Q Consensus 28 ~~~i~il~~i~~~~ 41 (248)
+++++++++.+.++
T Consensus 15 vlGMg~VfvFL~lL 28 (82)
T PRK02919 15 FLGMGFVLAFLFLL 28 (82)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444433333333
No 292
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=26 Score=31.59 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=16.7
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025788 9 SEAPQLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 9 ~~~~~l~p~~~~~~~~~~i~~~i~il~~i~~~~~~~~~~~~ 49 (248)
+|..|+.--+-++..+..+.+.+.+++.+++..++-+.++.
T Consensus 300 ~p~~h~~~~~~~l~g~~~~~ill~~vv~~v~~ai~s~~i~q 340 (351)
T KOG3839|consen 300 SPKDHLDDPEPELGGARLFLILLFVVVFLVGGAIFSIVIFQ 340 (351)
T ss_pred CchhcccccCcccCcchhHHHHHHHHHHHHHhhheEEEEEe
Confidence 34445422222233344444444444444444444443433
No 293
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.92 E-value=88 Score=30.33 Aligned_cols=8 Identities=0% Similarity=-0.134 Sum_probs=3.4
Q ss_pred cccccccc
Q 025788 106 CVCLGEFE 113 (248)
Q Consensus 106 ~ICl~~~~ 113 (248)
.+|.+.+.
T Consensus 95 v~t~Dg~p 102 (548)
T COG2268 95 VYTKDGMP 102 (548)
T ss_pred eEecCCCc
Confidence 34444443
No 294
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=24.90 E-value=1.2e+02 Score=22.38 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025788 23 LYQAFIFSIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~~~~~~ 49 (248)
+|..+.+.+++++..+++.++...+.+
T Consensus 48 ~WRN~GIli~f~i~f~~~~~~~~e~~~ 74 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFIVLTLLATEFIK 74 (103)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666655555444444444443443
No 295
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=24.64 E-value=66 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 19 IQLKLYQAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 19 ~~~~~~~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
.+..|...+.++++.+++-+.++.++.|+.
T Consensus 106 cE~~W~~s~~lGi~lFL~~l~l~~WIKF~~ 135 (175)
T PF07856_consen 106 CELAWRFSTVLGIPLFLAELALLGWIKFWD 135 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeehh
Confidence 566666666666665555555444444443
No 296
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=24.60 E-value=90 Score=22.35 Aligned_cols=10 Identities=30% Similarity=0.477 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 025788 26 AFIFSIPILF 35 (248)
Q Consensus 26 ~i~~~i~il~ 35 (248)
+|.+++.+++
T Consensus 41 ~FWv~LA~FV 50 (90)
T PF15183_consen 41 AFWVSLAAFV 50 (90)
T ss_pred hHHHHHHHHH
Confidence 3444444333
No 297
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.59 E-value=41 Score=21.58 Aligned_cols=23 Identities=22% Similarity=0.697 Sum_probs=12.2
Q ss_pred CCCCcCCHhHHHHHHhcCCCCccc
Q 025788 123 SCKHVFHVECIHYWLHSNTTCPLC 146 (248)
Q Consensus 123 ~C~H~fh~~Ci~~wl~~~~~CP~C 146 (248)
.|||.|-.. |.........||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 366655432 22222445679888
No 298
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=24.47 E-value=46 Score=26.10 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=15.2
Q ss_pred CCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 123 SCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 123 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
+|||+|+. .+..||.|....
T Consensus 34 ~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 34 KCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred CCCeEEcC--------CcccCCCCCCCC
Confidence 69998873 356899998764
No 299
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=24.47 E-value=49 Score=31.32 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=30.7
Q ss_pred CCccccccccc-ccCCcEEEcCCCCCcCCHhHHHHHHhc--------CCCCccccCc
Q 025788 102 DSQCCVCLGEF-EIKEELLQVPSCKHVFHVECIHYWLHS--------NTTCPLCRCS 149 (248)
Q Consensus 102 ~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~ 149 (248)
+..|++|..-. -....+....+|+--||..|....... ...|-+|...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 45699998544 333344444467778999998665431 2368888653
No 300
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.29 E-value=39 Score=26.44 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=9.3
Q ss_pred CCCCcccccccc
Q 025788 100 TRDSQCCVCLGE 111 (248)
Q Consensus 100 ~~~~~C~ICl~~ 111 (248)
..+.+|-||+..
T Consensus 63 ~ddatC~IC~KT 74 (169)
T KOG3799|consen 63 GDDATCGICHKT 74 (169)
T ss_pred CcCcchhhhhhc
Confidence 457899999854
No 301
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=24.15 E-value=51 Score=24.75 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=11.7
Q ss_pred cccccccccccCC-cEEEcCCCCC
Q 025788 104 QCCVCLGEFEIKE-ELLQVPSCKH 126 (248)
Q Consensus 104 ~C~ICl~~~~~~~-~~~~l~~C~H 126 (248)
.|+-|..+|.-.+ ...+.|.|+|
T Consensus 4 ~CP~C~seytY~dg~~~iCpeC~~ 27 (109)
T TIGR00686 4 PCPKCNSEYTYHDGTQLICPSCLY 27 (109)
T ss_pred cCCcCCCcceEecCCeeECccccc
Confidence 4777777664222 2334444555
No 302
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=23.71 E-value=38 Score=27.00 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=5.0
Q ss_pred CCCccccCc
Q 025788 141 TTCPLCRCS 149 (248)
Q Consensus 141 ~~CP~Cr~~ 149 (248)
+.||.|-.-
T Consensus 134 ~rc~eCG~~ 142 (153)
T KOG3352|consen 134 QRCPECGHY 142 (153)
T ss_pred ccCCcccce
Confidence 357777543
No 303
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.54 E-value=15 Score=22.51 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=13.4
Q ss_pred CCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 123 SCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 123 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 47777653321000 12457999986
No 304
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=23.51 E-value=1.6e+02 Score=23.75 Aligned_cols=8 Identities=38% Similarity=1.257 Sum_probs=3.0
Q ss_pred HHhcCCCC
Q 025788 136 WLHSNTTC 143 (248)
Q Consensus 136 wl~~~~~C 143 (248)
|-.-+..|
T Consensus 95 f~eAn~~C 102 (161)
T PHA02673 95 WTNANERC 102 (161)
T ss_pred HHHHHHHH
Confidence 33333344
No 305
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=23.08 E-value=1.9e+02 Score=17.82 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPIL 34 (248)
Q Consensus 22 ~~~~~i~~~i~il 34 (248)
.+|..+.++++++
T Consensus 7 yVW~sYg~t~l~l 19 (45)
T TIGR03141 7 YVWLAYGITALVL 19 (45)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554433
No 306
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=22.82 E-value=1.6e+02 Score=18.59 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025788 30 SIPILFSIILFLLFYLFYLK 49 (248)
Q Consensus 30 ~i~il~~i~~~~~~~~~~~~ 49 (248)
.+...++.+++.+..+.|.|
T Consensus 24 ~ig~avL~v~V~i~v~kwiR 43 (46)
T PF10389_consen 24 TIGGAVLGVIVGIAVYKWIR 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 307
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=22.68 E-value=87 Score=22.66 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=28.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|.-|...+.--+ ..| |-.|+..+..|..|++++..
T Consensus 33 rS~C~~C~~~L~~~~---lIP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD---LIP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccc---cch----------HHHHHHhCCCCcccCCCCCh
Confidence 467998888877433 344 66799888999999998864
No 308
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=22.59 E-value=29 Score=30.52 Aligned_cols=9 Identities=56% Similarity=1.039 Sum_probs=0.0
Q ss_pred HHHhhhccC
Q 025788 44 YLFYLKRRA 52 (248)
Q Consensus 44 ~~~~~~~r~ 52 (248)
++||++||+
T Consensus 245 LLfYr~rrR 253 (285)
T PF05337_consen 245 LLFYRRRRR 253 (285)
T ss_dssp ---------
T ss_pred eeeeccccc
Confidence 334444443
No 309
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=22.57 E-value=34 Score=33.90 Aligned_cols=49 Identities=24% Similarity=0.560 Sum_probs=31.6
Q ss_pred CCcccccccccccCCc-------EEEcCCCCCcCCHhHHHHH--H--------hcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEE-------LLQVPSCKHVFHVECIHYW--L--------HSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~-------~~~l~~C~H~fh~~Ci~~w--l--------~~~~~CP~Cr~~~~ 151 (248)
...|=||-|.=++.+. +-+. .|.-.||..|.... | .+-+.|-+|+..+.
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred cceeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 4689999887443321 1122 37788999998654 1 12467999987653
No 310
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.42 E-value=1.7e+02 Score=22.24 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025788 25 QAFIFSIPILFSIILFLLFYLF 46 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~~~ 46 (248)
.+++++++++.-|-+.++.|.+
T Consensus 13 a~mVlGFi~fWPlGla~Lay~i 34 (115)
T PF11014_consen 13 AAMVLGFIVFWPLGLALLAYMI 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555444333334444433
No 311
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.27 E-value=2.7e+02 Score=19.25 Aligned_cols=7 Identities=14% Similarity=0.093 Sum_probs=2.8
Q ss_pred CCHHHHh
Q 025788 81 WKGEIKD 87 (248)
Q Consensus 81 ~~~~~~~ 87 (248)
++++.++
T Consensus 39 ine~~iR 45 (71)
T COG3763 39 INEEMIR 45 (71)
T ss_pred CCHHHHH
Confidence 3344443
No 312
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.16 E-value=73 Score=29.04 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=26.4
Q ss_pred CCCcccccccccccCCcEEEcC--CCCCcC--------CHhHHHHHH-----hcCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVP--SCKHVF--------HVECIHYWL-----HSNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~f--------h~~Ci~~wl-----~~~~~CP~Cr~~ 149 (248)
.+..|++|-+... |-..-.|+ .|+-.| |+.|+..-- ...+.||.||..
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 4568999987765 33334454 233333 344543321 124579999864
No 313
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=22.01 E-value=2.4e+02 Score=19.18 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025788 17 QAIQLKLYQAFIFSIPILFSIILFLLFY 44 (248)
Q Consensus 17 ~~~~~~~~~~i~~~i~il~~i~~~~~~~ 44 (248)
+..+.++....++++.+++.+++=++++
T Consensus 34 qT~~~k~itl~vl~i~~~~i~i~q~Iw~ 61 (66)
T PF13061_consen 34 QTPELKLITLAVLGIFFIIILIIQLIWL 61 (66)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555555444444433333
No 314
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.79 E-value=24 Score=31.51 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=27.4
Q ss_pred CCcccccccccccC--------CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 102 DSQCCVCLGEFEIK--------EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 102 ~~~C~ICl~~~~~~--------~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
...|+||-..-... +..| |.+|..|-..|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLR------YLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 44899998764211 2233 44566677788777788999965
No 315
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.62 E-value=61 Score=21.24 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=7.0
Q ss_pred CCccccCcc
Q 025788 142 TCPLCRCSI 150 (248)
Q Consensus 142 ~CP~Cr~~~ 150 (248)
.||.|++..
T Consensus 30 yCpKCK~Et 38 (55)
T PF14205_consen 30 YCPKCKQET 38 (55)
T ss_pred cCCCCCceE
Confidence 689998764
No 316
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=21.62 E-value=35 Score=27.17 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=15.4
Q ss_pred CCCcCCHhHHHHHHhc-----------CCCCccccCcc
Q 025788 124 CKHVFHVECIHYWLHS-----------NTTCPLCRCSI 150 (248)
Q Consensus 124 C~H~fh~~Ci~~wl~~-----------~~~CP~Cr~~~ 150 (248)
|+|.| +.||.. --+||+|-..-
T Consensus 10 ~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~ 42 (148)
T PF06676_consen 10 NGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTE 42 (148)
T ss_pred CCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCe
Confidence 67887 578853 24799997543
No 317
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=21.58 E-value=1.5e+02 Score=24.73 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPILFSIILF 40 (248)
Q Consensus 22 ~~~~~i~~~i~il~~i~~~ 40 (248)
.+|.++.|+++++++--++
T Consensus 56 l~w~~I~FliL~~lL~k~~ 74 (204)
T PRK09174 56 LLWLAITFGLFYLFMSRVI 74 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677777766555443333
No 318
>PF15069 FAM163: FAM163 family
Probab=21.54 E-value=1.7e+02 Score=23.21 Aligned_cols=8 Identities=38% Similarity=1.207 Sum_probs=5.3
Q ss_pred CCCCcccc
Q 025788 140 NTTCPLCR 147 (248)
Q Consensus 140 ~~~CP~Cr 147 (248)
+..||.|.
T Consensus 91 ~~~CptCS 98 (143)
T PF15069_consen 91 RSYCPTCS 98 (143)
T ss_pred CCcCCCCC
Confidence 34688883
No 319
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.43 E-value=1.2e+02 Score=22.90 Aligned_cols=21 Identities=14% Similarity=0.548 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025788 25 QAFIFSIPILFSIILFLLFYL 45 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~~ 45 (248)
..+++++++-++++.+++|++
T Consensus 65 vglii~LivSLaLVsFvIFLi 85 (128)
T PF15145_consen 65 VGLIIVLIVSLALVSFVIFLI 85 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhe
Confidence 333333333333334444433
No 320
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=21.36 E-value=1.9e+02 Score=21.37 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025788 25 QAFIFSIPILFSIILFLL 42 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~ 42 (248)
..|+.+|++.+.++.+++
T Consensus 15 FLF~~AIFiAItIlYILL 32 (117)
T PF07234_consen 15 FLFFGAIFIAITILYILL 32 (117)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 321
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.33 E-value=51 Score=18.43 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=16.7
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhH
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVEC 132 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~C 132 (248)
.|.+|.++..... ...-..|.-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 5888877765432 322234676777766
No 322
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=21.32 E-value=34 Score=27.81 Aligned_cols=8 Identities=38% Similarity=1.364 Sum_probs=5.8
Q ss_pred CCCccccC
Q 025788 141 TTCPLCRC 148 (248)
Q Consensus 141 ~~CP~Cr~ 148 (248)
..||+|..
T Consensus 150 ~~CPiCga 157 (166)
T COG1592 150 EVCPICGA 157 (166)
T ss_pred CcCCCCCC
Confidence 37888864
No 323
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.12 E-value=1e+02 Score=20.46 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCccccccccccc--CCcEEEcCCCCCcCCHhHHHHH
Q 025788 102 DSQCCVCLGEFEI--KEELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 102 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~w 136 (248)
-..|+.|-..... .......+.||+.+|.+-...+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 4579999877765 3344455567777776654443
No 324
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.06 E-value=1.1e+02 Score=22.71 Aligned_cols=19 Identities=5% Similarity=0.107 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025788 23 LYQAFIFSIPILFSIILFL 41 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~ 41 (248)
++..++++.+++-+++++.
T Consensus 19 ~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALA 37 (102)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333
No 325
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.05 E-value=45 Score=33.12 Aligned_cols=33 Identities=33% Similarity=0.658 Sum_probs=23.7
Q ss_pred EEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 119 LQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 119 ~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
...|.|.-+||.+=.+--..++..||.||....
T Consensus 1045 t~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1045 TMCPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred hhCchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 344457777887777666667789999997653
No 326
>PRK10220 hypothetical protein; Provisional
Probab=20.93 E-value=77 Score=23.87 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=6.3
Q ss_pred cccccccccc
Q 025788 104 QCCVCLGEFE 113 (248)
Q Consensus 104 ~C~ICl~~~~ 113 (248)
-|+-|-.+|.
T Consensus 5 ~CP~C~seyt 14 (111)
T PRK10220 5 HCPKCNSEYT 14 (111)
T ss_pred cCCCCCCcce
Confidence 4777766654
No 327
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=20.64 E-value=2.3e+02 Score=20.27 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025788 23 LYQAFIFSIPILFSIILFLLFY 44 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~ 44 (248)
++.-|++++..+++++++++|+
T Consensus 32 firdFvLVic~~lVfVii~lFi 53 (84)
T PF06143_consen 32 FIRDFVLVICCFLVFVIIVLFI 53 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666555554444444333
No 328
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=20.58 E-value=81 Score=28.38 Aligned_cols=41 Identities=5% Similarity=-0.155 Sum_probs=29.7
Q ss_pred CcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCS 149 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~ 149 (248)
.+|-.|-+... .....+ |+|. |+..|.. +.-..+||.|...
T Consensus 344 ~~~~~~~~~~~---st~~~~-~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 344 LKGTSAGFGLL---STIWSG-GNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred cccccccCcee---eeEeec-CCcccChhhhhh--cccCCcccccccc
Confidence 46888876654 345566 9986 9999986 4556799999653
No 329
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.58 E-value=2.4e+02 Score=19.67 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 025788 33 ILFSIILFLLFYLFYLKR 50 (248)
Q Consensus 33 il~~i~~~~~~~~~~~~~ 50 (248)
++++..+-+++-+.-.++
T Consensus 14 ~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 14 VIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 334444444444444443
No 330
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=20.35 E-value=32 Score=37.22 Aligned_cols=49 Identities=31% Similarity=0.523 Sum_probs=35.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 150 (248)
....|-+|+......+.+.-. .|.-.||..|+..-+.. .-.||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 346799999887754333333 47888999999998753 34799998764
No 331
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=20.31 E-value=56 Score=29.33 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCcccccccccccCCcEEEcCCCCC-cCCHhHHHHH-HhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKH-VFHVECIHYW-LHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H-~fh~~Ci~~w-l~~~~~CP~Cr~~~~~ 152 (248)
.-.|.+|++.-. ..... .|+| +|+..|.-.- +++...|++|-.-+..
T Consensus 136 ti~~iqq~tnt~---I~T~v-~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~r 184 (394)
T KOG2113|consen 136 TIKRIQQFTNTY---IATPV-RCGEPVFCVTGAPKNCVKRARSCEIEQTAVTR 184 (394)
T ss_pred ccchheecccce---Eeeec-cCCCceEEEecCCcchhhhccccchhhhhhhh
Confidence 346888876632 22333 5998 5999997665 5667789999765443
No 332
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=20.03 E-value=2e+02 Score=18.02 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025788 25 QAFIFS 30 (248)
Q Consensus 25 ~~i~~~ 30 (248)
..|.++
T Consensus 33 vnf~li 38 (52)
T TIGR01294 33 INFCLI 38 (52)
T ss_pred HHHHHH
Confidence 333333
Done!