Query 025788
Match_columns 248
No_of_seqs 354 out of 2174
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 9.2E-18 3.1E-22 122.3 7.1 75 77-152 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 8.2E-17 2.8E-21 112.8 4.0 67 86-153 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 7.1E-16 2.4E-20 101.3 3.8 52 100-151 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 1.6E-15 5.4E-20 105.8 5.4 56 100-156 13-68 (74)
5 2ect_A Ring finger protein 126 99.6 1.6E-15 5.4E-20 106.9 5.3 59 99-158 12-70 (78)
6 2kiz_A E3 ubiquitin-protein li 99.6 2.4E-15 8.1E-20 103.5 5.9 54 99-153 11-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.5 5.9E-15 2E-19 105.0 3.8 52 101-152 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 3.1E-14 1.1E-18 93.3 4.0 50 101-151 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.5 8.7E-14 3E-18 104.9 6.3 52 101-153 24-95 (114)
10 3ng2_A RNF4, snurf, ring finge 99.4 5E-14 1.7E-18 97.1 4.2 53 100-153 8-64 (71)
11 2ea6_A Ring finger protein 4; 99.4 6E-14 2.1E-18 96.0 3.8 51 100-151 13-67 (69)
12 3dpl_R Ring-box protein 1; ubi 99.4 1E-13 3.5E-18 103.6 4.6 49 101-150 36-99 (106)
13 2xeu_A Ring finger protein 4; 99.4 8.2E-14 2.8E-18 93.9 3.4 52 101-153 2-57 (64)
14 2d8s_A Cellular modulator of i 99.4 2.3E-13 7.9E-18 96.5 5.2 56 99-156 12-74 (80)
15 2djb_A Polycomb group ring fin 99.4 3.9E-13 1.3E-17 93.2 5.4 54 100-157 13-67 (72)
16 1chc_A Equine herpes virus-1 r 99.4 2.8E-13 9.7E-18 92.6 4.6 50 100-152 3-52 (68)
17 2ecn_A Ring finger protein 141 99.4 1.3E-13 4.3E-18 95.0 2.6 52 100-156 13-64 (70)
18 2d8t_A Dactylidin, ring finger 99.4 2E-13 6.8E-18 94.4 3.0 49 100-152 13-61 (71)
19 2ct2_A Tripartite motif protei 99.3 1.1E-12 3.7E-17 94.1 5.2 52 100-152 13-68 (88)
20 2csy_A Zinc finger protein 183 99.3 1.3E-12 4.3E-17 92.6 4.5 48 100-151 13-60 (81)
21 4a0k_B E3 ubiquitin-protein li 99.3 2.2E-13 7.5E-18 103.3 0.5 50 101-151 47-111 (117)
22 3lrq_A E3 ubiquitin-protein li 99.3 5.2E-13 1.8E-17 98.6 2.3 54 101-158 21-76 (100)
23 2yur_A Retinoblastoma-binding 99.3 2.8E-12 9.7E-17 89.3 5.2 51 100-153 13-65 (74)
24 1t1h_A Gspef-atpub14, armadill 99.3 1.9E-12 6.5E-17 90.9 4.2 55 100-158 6-61 (78)
25 2ysl_A Tripartite motif-contai 99.3 2.4E-12 8.3E-17 89.1 4.5 49 100-152 18-69 (73)
26 2ecy_A TNF receptor-associated 99.3 2.3E-12 7.8E-17 87.7 4.2 49 101-153 14-63 (66)
27 4ayc_A E3 ubiquitin-protein li 99.3 1.3E-12 4.4E-17 102.0 3.2 48 101-152 52-99 (138)
28 2ecw_A Tripartite motif-contai 99.2 5E-12 1.7E-16 89.7 4.9 50 100-153 17-72 (85)
29 2ct0_A Non-SMC element 1 homol 99.2 6.3E-12 2.2E-16 87.5 5.0 50 101-153 14-65 (74)
30 2ecv_A Tripartite motif-contai 99.2 6.1E-12 2.1E-16 89.3 4.9 49 101-153 18-72 (85)
31 2egp_A Tripartite motif-contai 99.2 1.8E-12 6.1E-17 91.1 1.8 50 100-153 10-66 (79)
32 4ap4_A E3 ubiquitin ligase RNF 99.2 5.5E-12 1.9E-16 96.9 3.7 53 100-153 5-61 (133)
33 1g25_A CDK-activating kinase a 99.2 1.1E-11 3.6E-16 84.1 4.1 51 102-153 3-56 (65)
34 2y43_A E3 ubiquitin-protein li 99.2 9E-12 3.1E-16 91.5 3.5 48 101-152 21-69 (99)
35 2ysj_A Tripartite motif-contai 99.2 1.5E-11 5.1E-16 82.7 4.3 43 100-146 18-63 (63)
36 2ckl_A Polycomb group ring fin 99.2 1.3E-11 4.4E-16 92.2 3.7 50 100-153 13-63 (108)
37 3fl2_A E3 ubiquitin-protein li 99.1 1.9E-11 6.4E-16 93.5 3.9 48 101-152 51-99 (124)
38 3ztg_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 87.0 4.9 49 100-151 11-61 (92)
39 1jm7_A BRCA1, breast cancer ty 99.1 2.8E-11 9.6E-16 90.6 4.3 51 102-156 21-74 (112)
40 2ecj_A Tripartite motif-contai 99.1 2.7E-11 9.3E-16 79.8 3.4 42 101-146 14-58 (58)
41 4ap4_A E3 ubiquitin ligase RNF 99.1 2.9E-11 1E-15 92.8 3.7 53 100-153 70-126 (133)
42 2ckl_B Ubiquitin ligase protei 99.1 7.9E-11 2.7E-15 94.4 5.5 49 101-152 53-102 (165)
43 1z6u_A NP95-like ring finger p 99.1 5.6E-11 1.9E-15 94.1 3.8 49 101-153 77-126 (150)
44 1e4u_A Transcriptional repress 99.1 1.2E-10 4E-15 82.1 4.9 55 100-155 9-65 (78)
45 2vje_A E3 ubiquitin-protein li 99.1 4.7E-11 1.6E-15 80.9 2.2 48 101-152 7-57 (64)
46 3hct_A TNF receptor-associated 99.0 7.7E-11 2.6E-15 89.4 3.1 50 100-153 16-66 (118)
47 1rmd_A RAG1; V(D)J recombinati 99.0 1.5E-10 5E-15 87.4 3.9 49 102-154 23-72 (116)
48 2kr4_A Ubiquitin conjugation f 99.0 1.6E-10 5.5E-15 82.7 3.8 50 101-154 13-62 (85)
49 3l11_A E3 ubiquitin-protein li 99.0 3.3E-11 1.1E-15 90.9 0.1 48 101-152 14-62 (115)
50 2vje_B MDM4 protein; proto-onc 99.0 1.3E-10 4.4E-15 78.4 2.9 51 100-152 5-56 (63)
51 1wgm_A Ubiquitin conjugation f 99.0 1.8E-10 6.3E-15 84.6 3.3 52 101-156 21-73 (98)
52 2kre_A Ubiquitin conjugation f 99.0 1.3E-10 4.5E-15 85.7 2.5 52 101-156 28-79 (100)
53 2y1n_A E3 ubiquitin-protein li 99.0 3.3E-10 1.1E-14 101.9 4.7 49 102-154 332-381 (389)
54 1bor_A Transcription factor PM 98.9 2.4E-10 8E-15 75.2 1.9 46 100-152 4-49 (56)
55 4ic3_A E3 ubiquitin-protein li 98.9 2.2E-10 7.4E-15 79.8 1.2 45 101-153 23-68 (74)
56 3knv_A TNF receptor-associated 98.9 3.2E-10 1.1E-14 88.8 2.2 48 100-151 29-77 (141)
57 1jm7_B BARD1, BRCA1-associated 98.9 3.3E-10 1.1E-14 85.7 1.8 46 101-152 21-67 (117)
58 2ea5_A Cell growth regulator w 98.8 2.7E-09 9.2E-14 73.0 4.3 51 99-157 12-63 (68)
59 3k1l_B Fancl; UBC, ring, RWD, 98.8 9.7E-10 3.3E-14 96.7 1.9 52 101-152 307-373 (381)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.7E-09 5.9E-14 78.7 2.9 52 100-154 5-65 (94)
61 2c2l_A CHIP, carboxy terminus 98.7 2.6E-09 8.9E-14 91.8 2.6 51 101-155 207-258 (281)
62 2ecg_A Baculoviral IAP repeat- 98.7 4.2E-09 1.4E-13 73.3 3.1 46 102-155 25-71 (75)
63 3hcs_A TNF receptor-associated 98.7 3.7E-09 1.3E-13 84.9 2.9 50 100-153 16-66 (170)
64 2yho_A E3 ubiquitin-protein li 98.7 3.1E-09 1E-13 74.9 1.4 50 102-159 18-68 (79)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1E-08 3.5E-13 68.3 3.9 48 100-151 4-58 (60)
66 2f42_A STIP1 homology and U-bo 98.6 1.3E-08 4.4E-13 82.5 3.4 50 101-154 105-155 (179)
67 1wim_A KIAA0161 protein; ring 98.6 1.3E-08 4.4E-13 73.8 2.9 48 101-149 4-61 (94)
68 3t6p_A Baculoviral IAP repeat- 98.4 3.5E-08 1.2E-12 87.9 0.9 45 101-153 294-339 (345)
69 2bay_A PRE-mRNA splicing facto 98.4 9E-08 3.1E-12 63.9 2.6 49 102-154 3-52 (61)
70 3htk_C E3 SUMO-protein ligase 98.4 1.4E-07 4.7E-12 80.4 2.7 52 101-155 180-235 (267)
71 3vk6_A E3 ubiquitin-protein li 98.2 5E-07 1.7E-11 65.4 3.2 48 104-154 3-51 (101)
72 3nw0_A Non-structural maintena 97.9 8E-06 2.7E-10 69.1 4.2 49 101-152 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.019 6.6E-07 41.2 3.0 35 101-136 2-36 (101)
74 2lri_C Autoimmune regulator; Z 94.5 0.026 8.8E-07 37.7 2.9 46 101-150 11-60 (66)
75 2ko5_A Ring finger protein Z; 94.1 0.042 1.4E-06 39.0 3.5 50 101-156 27-77 (99)
76 1wil_A KIAA1045 protein; ring 91.9 0.12 4.2E-06 35.9 3.1 35 100-136 13-47 (89)
77 1we9_A PHD finger family prote 91.8 0.035 1.2E-06 36.6 0.3 49 100-148 4-57 (64)
78 2l5u_A Chromodomain-helicase-D 91.4 0.1 3.5E-06 34.1 2.2 46 99-148 8-57 (61)
79 2jwa_A Receptor tyrosine-prote 91.3 0.32 1.1E-05 29.5 4.2 17 36-52 23-39 (44)
80 2l2t_A Receptor tyrosine-prote 90.3 0.64 2.2E-05 28.2 4.8 14 39-52 25-38 (44)
81 3lqh_A Histone-lysine N-methyl 88.8 0.16 5.4E-06 40.8 1.7 49 102-150 2-64 (183)
82 2k16_A Transcription initiatio 88.6 0.14 4.8E-06 34.7 1.1 50 100-150 16-69 (75)
83 3u5n_A E3 ubiquitin-protein li 88.2 0.11 3.8E-06 42.4 0.5 47 100-150 5-55 (207)
84 2ks1_B Epidermal growth factor 88.0 0.56 1.9E-05 28.5 3.4 11 42-52 29-39 (44)
85 3o36_A Transcription intermedi 87.3 0.13 4.5E-06 41.1 0.4 46 101-150 3-52 (184)
86 1mm2_A MI2-beta; PHD, zinc fin 87.2 0.11 3.8E-06 33.9 -0.1 47 99-149 6-56 (61)
87 2yql_A PHD finger protein 21A; 86.5 0.088 3E-06 33.7 -0.9 46 99-148 6-55 (56)
88 3ql9_A Transcriptional regulat 86.1 0.57 2E-05 35.3 3.3 49 96-148 51-110 (129)
89 2lbm_A Transcriptional regulat 85.4 0.97 3.3E-05 34.6 4.4 47 98-148 59-116 (142)
90 2vpb_A Hpygo1, pygopus homolog 83.9 0.73 2.5E-05 30.4 2.7 34 100-133 6-40 (65)
91 1wep_A PHF8; structural genomi 83.1 1.3 4.5E-05 30.1 3.9 49 101-150 11-64 (79)
92 1iij_A ERBB-2 receptor protein 81.8 0.8 2.7E-05 26.3 1.9 25 27-51 10-34 (35)
93 1f62_A Transcription factor WS 81.8 0.64 2.2E-05 28.8 1.7 44 104-148 2-49 (51)
94 2kgg_A Histone demethylase jar 81.3 1.1 3.9E-05 27.9 2.7 44 104-147 4-52 (52)
95 1xwh_A Autoimmune regulator; P 80.3 0.24 8.3E-06 32.7 -0.7 45 100-148 6-54 (66)
96 1fp0_A KAP-1 corepressor; PHD 80.2 0.97 3.3E-05 31.7 2.3 47 99-149 22-72 (88)
97 2l43_A N-teminal domain from h 80.2 0.6 2E-05 32.7 1.3 51 100-150 23-76 (88)
98 2puy_A PHD finger protein 21A; 79.9 0.29 9.8E-06 31.7 -0.5 46 101-150 4-53 (60)
99 3v43_A Histone acetyltransfera 79.7 0.45 1.6E-05 34.8 0.5 46 103-148 62-111 (112)
100 2ri7_A Nucleosome-remodeling f 79.3 0.44 1.5E-05 37.5 0.4 48 101-149 7-59 (174)
101 1wev_A Riken cDNA 1110020M19; 78.4 0.19 6.4E-06 35.4 -1.9 51 101-151 15-74 (88)
102 2ysm_A Myeloid/lymphoid or mix 77.7 0.59 2E-05 34.0 0.6 38 100-138 5-42 (111)
103 3m62_A Ubiquitin conjugation f 77.2 1.6 5.5E-05 43.4 3.7 51 101-155 890-941 (968)
104 1wee_A PHD finger family prote 77.0 0.3 1E-05 32.8 -1.1 48 101-149 15-66 (72)
105 2yt5_A Metal-response element- 76.7 1.2 4E-05 29.1 1.8 50 100-149 4-61 (66)
106 2e6r_A Jumonji/ARID domain-con 75.8 0.32 1.1E-05 34.5 -1.3 48 101-149 15-66 (92)
107 2jwa_A Receptor tyrosine-prote 75.6 6.8 0.00023 23.6 4.8 30 23-52 13-42 (44)
108 2ro1_A Transcription intermedi 74.8 0.64 2.2E-05 37.3 0.1 44 102-149 2-49 (189)
109 2l2t_A Receptor tyrosine-prote 74.1 6.1 0.00021 23.8 4.4 30 24-53 13-42 (44)
110 3v43_A Histone acetyltransfera 74.0 4.4 0.00015 29.3 4.6 34 101-134 4-42 (112)
111 1z60_A TFIIH basal transcripti 73.5 2.2 7.5E-05 27.5 2.4 43 103-146 16-58 (59)
112 2ks1_B Epidermal growth factor 73.4 5.9 0.0002 23.9 4.2 29 25-53 15-43 (44)
113 2klu_A T-cell surface glycopro 72.6 3.4 0.00012 27.2 3.1 6 124-129 59-64 (70)
114 1weo_A Cellulose synthase, cat 72.4 5.6 0.00019 27.8 4.4 52 101-152 15-70 (93)
115 1wem_A Death associated transc 71.9 1.5 5.2E-05 29.5 1.5 46 102-149 16-70 (76)
116 2ku3_A Bromodomain-containing 70.8 3.8 0.00013 27.3 3.2 49 100-148 14-65 (71)
117 2e6s_A E3 ubiquitin-protein li 70.7 0.81 2.8E-05 31.2 -0.2 45 103-148 27-76 (77)
118 2xb1_A Pygopus homolog 2, B-ce 69.7 1.9 6.6E-05 31.1 1.7 49 102-150 3-62 (105)
119 2cs3_A Protein C14ORF4, MY039 69.7 4.9 0.00017 27.6 3.6 45 101-146 14-64 (93)
120 3asl_A E3 ubiquitin-protein li 69.1 0.83 2.8E-05 30.5 -0.4 44 104-148 20-68 (70)
121 1y02_A CARP2, FYVE-ring finger 68.7 0.68 2.3E-05 34.5 -1.0 47 102-148 19-65 (120)
122 1zbd_B Rabphilin-3A; G protein 68.4 2.4 8.3E-05 32.0 2.1 50 100-149 53-107 (134)
123 3a1b_A DNA (cytosine-5)-methyl 66.7 4.6 0.00016 31.4 3.3 47 97-147 74-132 (159)
124 3o70_A PHD finger protein 13; 65.5 1.3 4.5E-05 29.4 0.0 46 101-148 18-66 (68)
125 4gne_A Histone-lysine N-methyl 64.8 4.7 0.00016 29.2 2.9 46 99-150 12-63 (107)
126 2lv9_A Histone-lysine N-methyl 64.8 1.4 4.9E-05 31.3 0.1 44 103-148 29-75 (98)
127 3ask_A E3 ubiquitin-protein li 64.4 1.6 5.6E-05 36.0 0.4 45 103-148 175-224 (226)
128 2kwj_A Zinc finger protein DPF 64.0 4.3 0.00015 29.5 2.7 34 103-136 2-41 (114)
129 1vfy_A Phosphatidylinositol-3- 63.8 4.5 0.00015 26.9 2.5 33 103-135 12-44 (73)
130 3t7l_A Zinc finger FYVE domain 63.7 3.9 0.00013 28.5 2.3 36 102-137 20-55 (90)
131 1z2q_A LM5-1; membrane protein 62.9 4.7 0.00016 27.6 2.5 36 101-136 20-55 (84)
132 1joc_A EEA1, early endosomal a 62.8 3.9 0.00013 30.4 2.3 34 102-135 69-102 (125)
133 1pi7_A VPU protein, U ORF prot 62.6 14 0.00049 21.2 4.1 7 43-49 25-31 (36)
134 2yw8_A RUN and FYVE domain-con 62.5 4.6 0.00016 27.6 2.4 34 102-135 19-52 (82)
135 1wen_A Inhibitor of growth fam 62.4 3.6 0.00012 27.4 1.8 44 101-149 15-65 (71)
136 1wfk_A Zinc finger, FYVE domai 62.3 4.8 0.00017 28.0 2.5 50 101-150 8-64 (88)
137 2l8s_A Integrin alpha-1; trans 60.0 23 0.00078 22.3 5.1 9 23-31 9-17 (54)
138 1wew_A DNA-binding family prot 58.9 2.3 7.8E-05 28.8 0.3 47 101-149 15-72 (78)
139 1dvp_A HRS, hepatocyte growth 58.6 4.2 0.00014 33.1 1.9 34 102-135 161-194 (220)
140 1weu_A Inhibitor of growth fam 58.0 5 0.00017 28.2 2.0 44 101-149 35-85 (91)
141 3zyq_A Hepatocyte growth facto 57.4 4.7 0.00016 33.0 2.1 35 102-136 164-198 (226)
142 1x4u_A Zinc finger, FYVE domai 57.0 6.1 0.00021 27.0 2.3 33 102-134 14-46 (84)
143 3c6w_A P28ING5, inhibitor of g 54.2 3.2 0.00011 26.6 0.4 43 101-148 8-57 (59)
144 2knc_A Integrin alpha-IIB; tra 53.9 32 0.0011 21.6 5.0 13 22-34 11-23 (54)
145 3shb_A E3 ubiquitin-protein li 53.8 1.6 5.6E-05 29.7 -1.1 44 104-148 28-76 (77)
146 2o35_A Hypothetical protein DU 53.3 5.6 0.00019 28.4 1.5 11 128-138 43-53 (105)
147 3fyb_A Protein of unknown func 53.0 5.7 0.00019 28.3 1.5 11 128-138 42-52 (104)
148 1wyh_A SLIM 2, skeletal muscle 52.7 6.5 0.00022 25.4 1.8 41 102-152 5-45 (72)
149 1x4k_A Skeletal muscle LIM-pro 52.4 6.6 0.00022 25.4 1.8 41 103-153 6-46 (72)
150 1iml_A CRIP, cysteine rich int 52.0 4.3 0.00015 26.8 0.8 9 142-150 29-37 (76)
151 2pv0_B DNA (cytosine-5)-methyl 51.8 9.8 0.00034 33.8 3.3 50 96-149 87-148 (386)
152 2zet_C Melanophilin; complex, 50.9 6.6 0.00023 30.3 1.8 47 101-149 67-117 (153)
153 2co8_A NEDD9 interacting prote 50.4 8.6 0.00029 25.8 2.2 43 101-154 14-56 (82)
154 3mpx_A FYVE, rhogef and PH dom 49.8 3.4 0.00012 36.8 0.0 48 102-149 375-429 (434)
155 2cu8_A Cysteine-rich protein 2 49.7 5.2 0.00018 26.4 0.9 40 102-152 9-48 (76)
156 2rsd_A E3 SUMO-protein ligase 49.3 1.4 4.7E-05 29.1 -2.0 44 103-148 11-64 (68)
157 2vnf_A ING 4, P29ING4, inhibit 49.1 4 0.00014 26.2 0.2 42 102-148 10-58 (60)
158 1x4l_A Skeletal muscle LIM-pro 48.9 9.8 0.00034 24.6 2.2 41 102-152 5-47 (72)
159 1x63_A Skeletal muscle LIM-pro 47.8 9.9 0.00034 25.2 2.1 42 102-153 15-56 (82)
160 1x61_A Thyroid receptor intera 47.5 10 0.00035 24.4 2.1 40 102-151 5-44 (72)
161 2dj7_A Actin-binding LIM prote 47.4 8.2 0.00028 25.9 1.6 40 101-151 14-53 (80)
162 1wd2_A Ariadne-1 protein homol 47.2 2 6.9E-05 27.7 -1.5 36 103-138 7-46 (60)
163 1g47_A Pinch protein; LIM doma 46.2 8.2 0.00028 25.3 1.5 42 102-153 11-52 (77)
164 2l8s_A Integrin alpha-1; trans 45.9 37 0.0013 21.3 4.3 26 23-48 12-37 (54)
165 3i2d_A E3 SUMO-protein ligase 45.3 18 0.00063 31.9 3.9 48 103-154 250-302 (371)
166 2k1a_A Integrin alpha-IIB; sin 44.5 48 0.0016 19.6 4.5 11 23-33 10-20 (42)
167 3kqi_A GRC5, PHD finger protei 43.3 6.6 0.00023 26.2 0.6 46 104-149 11-61 (75)
168 2l3k_A Rhombotin-2, linker, LI 43.3 8.3 0.00028 28.1 1.2 38 104-151 10-47 (123)
169 3kv5_D JMJC domain-containing 43.3 5.2 0.00018 36.8 0.1 47 103-150 38-89 (488)
170 4fo9_A E3 SUMO-protein ligase 43.2 21 0.00073 31.4 4.0 48 103-154 216-268 (360)
171 1x62_A C-terminal LIM domain p 42.5 11 0.00038 24.9 1.7 39 102-152 15-53 (79)
172 2d8y_A Eplin protein; LIM doma 42.3 18 0.00063 24.5 2.9 41 102-153 15-55 (91)
173 2jmi_A Protein YNG1, ING1 homo 42.3 3.2 0.00011 29.1 -1.2 45 101-148 25-75 (90)
174 2cor_A Pinch protein; LIM doma 42.2 16 0.00056 24.2 2.5 40 102-153 15-54 (79)
175 3f6q_B LIM and senescent cell 41.8 11 0.00037 24.1 1.5 42 102-153 11-52 (72)
176 1zfo_A LAsp-1; LIM domain, zin 41.6 12 0.00042 20.4 1.5 28 103-133 4-31 (31)
177 1x68_A FHL5 protein; four-and- 41.2 11 0.00037 24.8 1.4 40 102-151 5-46 (76)
178 1x64_A Alpha-actinin-2 associa 41.0 18 0.0006 24.5 2.6 41 101-153 24-64 (89)
179 2g6q_A Inhibitor of growth pro 40.5 3.8 0.00013 26.5 -0.9 44 102-148 11-59 (62)
180 2ct7_A Ring finger protein 31; 40.4 2.2 7.6E-05 29.5 -2.2 18 119-136 44-61 (86)
181 3mjh_B Early endosome antigen 40.0 5.7 0.00019 22.6 -0.1 13 102-114 5-17 (34)
182 1nyp_A Pinch protein; LIM doma 38.5 11 0.00036 23.9 1.0 39 102-152 5-43 (66)
183 2d8v_A Zinc finger FYVE domain 38.4 19 0.00066 23.6 2.2 32 100-136 6-38 (67)
184 1a7i_A QCRP2 (LIM1); LIM domai 38.3 5.8 0.0002 26.4 -0.3 41 102-153 7-47 (81)
185 2gmg_A Hypothetical protein PF 38.1 5.9 0.0002 28.6 -0.3 23 123-150 72-94 (105)
186 2knc_B Integrin beta-3; transm 36.9 40 0.0014 22.8 3.8 8 25-32 12-19 (79)
187 2l4z_A DNA endonuclease RBBP8, 35.9 9.7 0.00033 27.9 0.6 38 103-151 62-99 (123)
188 2d8x_A Protein pinch; LIM doma 35.5 17 0.0006 23.1 1.8 40 102-153 5-44 (70)
189 1wig_A KIAA1808 protein; LIM d 34.6 18 0.00063 23.5 1.8 37 103-151 6-42 (73)
190 3o7a_A PHD finger protein 13 v 34.1 6.8 0.00023 24.1 -0.5 41 107-148 8-51 (52)
191 2jmo_A Parkin; IBR, E3 ligase, 33.4 2.8 9.6E-05 28.6 -2.6 14 123-136 55-68 (80)
192 2jne_A Hypothetical protein YF 33.2 16 0.00055 25.9 1.3 41 102-151 32-72 (101)
193 1x6a_A LIMK-2, LIM domain kina 33.2 15 0.00053 24.2 1.2 38 103-152 16-53 (81)
194 2dar_A PDZ and LIM domain prot 32.8 17 0.00059 24.6 1.5 40 101-152 24-63 (90)
195 1v6g_A Actin binding LIM prote 31.8 17 0.00059 24.0 1.3 38 103-152 16-53 (81)
196 2ehe_A Four and A half LIM dom 31.7 21 0.00072 23.5 1.7 40 103-152 16-55 (82)
197 2d8z_A Four and A half LIM dom 31.4 24 0.00081 22.4 1.9 39 102-152 5-43 (70)
198 3kv4_A PHD finger protein 8; e 30.5 12 0.00039 34.1 0.2 49 103-151 5-58 (447)
199 2knc_A Integrin alpha-IIB; tra 29.9 1E+02 0.0035 19.2 5.0 26 23-48 15-40 (54)
200 2jrp_A Putative cytoplasmic pr 29.2 27 0.00092 23.9 1.9 10 104-113 4-13 (81)
201 2jvx_A NF-kappa-B essential mo 27.7 13 0.00045 20.0 0.1 11 141-151 4-14 (28)
202 2egq_A FHL1 protein; LIM domai 26.9 22 0.00077 23.0 1.2 40 103-152 16-58 (77)
203 2cup_A Skeletal muscle LIM-pro 26.3 35 0.0012 23.4 2.1 44 103-151 34-77 (101)
204 1rut_X Flinc4, fusion protein 26.3 24 0.00083 27.5 1.4 38 104-151 71-108 (188)
205 2cur_A Skeletal muscle LIM-pro 26.1 33 0.0011 21.7 1.8 38 102-151 5-42 (69)
206 2cuq_A Four and A half LIM dom 25.9 23 0.00079 23.2 1.1 38 103-152 16-53 (80)
207 2das_A Zinc finger MYM-type pr 25.1 79 0.0027 20.2 3.4 35 102-136 20-55 (62)
208 2kpi_A Uncharacterized protein 24.2 30 0.001 21.7 1.3 13 102-114 10-22 (56)
209 1j2o_A FLIN2, fusion of rhombo 23.1 32 0.0011 24.4 1.5 12 125-136 52-63 (114)
210 2iyb_E Testin, TESS, TES; LIM 23.1 29 0.001 21.8 1.1 39 104-152 4-44 (65)
211 2pk7_A Uncharacterized protein 22.6 20 0.00067 23.7 0.2 19 134-152 2-20 (69)
212 1m3v_A FLIN4, fusion of the LI 22.4 58 0.002 23.3 2.8 49 102-152 32-81 (122)
213 2lcq_A Putative toxin VAPC6; P 22.1 26 0.00087 26.8 0.8 24 121-150 135-158 (165)
214 2zxe_G FXYD10, phospholemman-l 21.8 86 0.0029 20.9 3.2 10 20-29 18-27 (74)
215 2fiy_A Protein FDHE homolog; F 21.6 10 0.00034 32.8 -1.9 48 100-149 180-231 (309)
216 2rgt_A Fusion of LIM/homeobox 21.0 34 0.0011 26.1 1.3 38 104-151 67-104 (169)
217 1b8t_A Protein (CRP1); LIM dom 20.7 37 0.0013 26.5 1.5 40 102-152 115-154 (192)
218 2dw3_A Intrinsic membrane prot 20.6 2E+02 0.0068 19.2 5.2 11 25-35 29-39 (77)
219 2csz_A Synaptotagmin-like prot 20.6 33 0.0011 23.1 1.0 34 99-132 22-56 (76)
220 2dlo_A Thyroid receptor-intera 20.5 31 0.001 22.7 0.8 39 102-152 15-53 (81)
221 2jo1_A Phospholemman; FXYD1, N 20.1 2E+02 0.0067 19.0 5.7 15 20-34 15-29 (72)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=9.2e-18 Score=122.27 Aligned_cols=75 Identities=33% Similarity=0.754 Sum_probs=66.0
Q ss_pred ccCCCCHHHHhhCCceeecccc--CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 77 EHIGWKGEIKDRLPTILFDEEL--RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...+++++.++.||.+.+.... .+.+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+.+
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4478999999999999887543 345678999999999988899999 99999999999999989999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-17 Score=112.81 Aligned_cols=67 Identities=36% Similarity=0.905 Sum_probs=56.5
Q ss_pred HhhCCceeecccc-CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 86 KDRLPTILFDEEL-RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 86 ~~~l~~~~~~~~~-~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
++.+|...++... ..++..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||+.+.+.
T Consensus 6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3457888776532 345678999999999998899998 999999999999999889999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.58 E-value=7.1e-16 Score=101.33 Aligned_cols=52 Identities=48% Similarity=1.032 Sum_probs=46.6
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
+++.+|+||+++|..++.++.++.|+|.||..||..|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999988888888779999999999999998999999998763
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=105.82 Aligned_cols=56 Identities=38% Similarity=0.946 Sum_probs=49.4
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
..+..|+||++.|..+..++.++ |+|.||..||..|++.+.+||+||+.+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 34678999999999988898998 999999999999999888999999998765443
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-15 Score=106.89 Aligned_cols=59 Identities=34% Similarity=0.797 Sum_probs=50.9
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCCCC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKLYN 158 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~ 158 (248)
...+..|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||..+.......+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 345679999999999888888998 99999999999999988999999999876554433
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=103.48 Aligned_cols=54 Identities=35% Similarity=0.937 Sum_probs=48.0
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888899998 999999999999999888999999988654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.9e-15 Score=105.02 Aligned_cols=52 Identities=27% Similarity=0.690 Sum_probs=42.0
Q ss_pred CCCccccccccccc-----------CCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEI-----------KEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~-----------~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
++..|+||+++|.. ++.++.++.|+|.||..||++|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888888853 44466665699999999999999999999999988753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.46 E-value=3.1e-14 Score=93.30 Aligned_cols=50 Identities=28% Similarity=0.657 Sum_probs=42.9
Q ss_pred CCCcccccccccccCC-cEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEIKE-ELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~-~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.+..|+||++.|..++ .++.++ |+|.||..||..|+..+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999996543 466777 9999999999999998899999998763
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.45 E-value=8.7e-14 Score=104.94 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=41.8
Q ss_pred CCCcccccccccccCC---------------cEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKE---------------ELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~ 153 (248)
.+..|+||++.|..+. .++.++ |+|.||..||..|+. .+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4568999999997643 344676 999999999999993 467999999887543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=5e-14 Score=97.13 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=44.9
Q ss_pred CCCCcccccccccccC----CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIK----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
+++..|+||++.|... +.++.++ |||.||..||..|+..+..||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999999763 4456777 999999999999999889999999988654
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6e-14 Score=96.03 Aligned_cols=51 Identities=27% Similarity=0.677 Sum_probs=43.4
Q ss_pred CCCCcccccccccccC----CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIK----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..+..|+||++.|... ..+..++ |||.||..||..|+..+..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567899999999864 3346777 9999999999999998899999998874
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.42 E-value=1e-13 Score=103.56 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=42.0
Q ss_pred CCCcccccccccccCC---------------cEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKE---------------ELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~---------------~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
.+..|+||++.|...- .++.++ |+|.||..||..||..+.+||+||+.+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 5678999999998541 256677 999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.41 E-value=8.2e-14 Score=93.92 Aligned_cols=52 Identities=27% Similarity=0.617 Sum_probs=44.0
Q ss_pred CCCcccccccccccC----CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIK----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
++..|+||++.+... +.+..++ |||.||..|+..|+..+..||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 467899999999753 3456777 999999999999999889999999987653
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=96.48 Aligned_cols=56 Identities=30% Similarity=0.726 Sum_probs=45.5
Q ss_pred CCCCCcccccccccccCCcEEEcCCCC-----CcCCHhHHHHHHhcC--CCCccccCccccCCCC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCK-----HVFHVECIHYWLHSN--TTCPLCRCSIVPITKL 156 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~ 156 (248)
..++..|.||+++|..++.+ ++| |+ |.||..||++||..+ .+||+||..+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 34567899999999877766 688 86 999999999999754 5999999988665443
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=93.18 Aligned_cols=54 Identities=24% Similarity=0.477 Sum_probs=44.5
Q ss_pred CCCCcccccccccccCCcEEEc-CCCCCcCCHhHHHHHHhcCCCCccccCccccCCCCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQV-PSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKLY 157 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (248)
..+..|+||++.|.+ .+.+ + |+|.||..||..|+..+..||+||..+...+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCCCCChHHHC---cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 346789999999884 3444 6 9999999999999988899999999887655443
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=2.8e-13 Score=92.61 Aligned_cols=50 Identities=34% Similarity=0.844 Sum_probs=43.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
+.+..|+||++.+.. .++.++ |||.||..|+..|+..+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 346789999999873 356787 99999999999999988999999998854
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.3e-13 Score=95.00 Aligned_cols=52 Identities=31% Similarity=0.875 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
..+..|+||++.+.. +.++ |+|.||..||..|+..+..||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 346789999999885 6777 999999999999999899999999988765433
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=94.39 Aligned_cols=49 Identities=31% Similarity=0.624 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..+..|+||++.+.. .+.++ |+|.||..||..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 356789999999873 56777 99999999999999988999999998754
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=94.09 Aligned_cols=52 Identities=21% Similarity=0.498 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCCc-EEEcCCCCCcCCHhHHHHHHhcC---CCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEE-LLQVPSCKHVFHVECIHYWLHSN---TTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 152 (248)
.++..|+||++.|...+. .+.++ |||.||..||..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 456789999999987654 67787 99999999999999865 799999988754
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=92.62 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..+..|+||++.|.. ..+++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 346789999999974 55677 9999999999999998899999999885
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.31 E-value=2.2e-13 Score=103.29 Aligned_cols=50 Identities=30% Similarity=0.634 Sum_probs=1.1
Q ss_pred CCCcccccccccccC-------------Cc--EEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEIK-------------EE--LLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~-------------~~--~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.++.|+||++.|... +. +..++ |+|.||..||..||..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 467899999999752 22 22345 9999999999999999999999998753
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=5.2e-13 Score=98.60 Aligned_cols=54 Identities=20% Similarity=0.548 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCcEEE-cCCCCCcCCHhHHHHHHhcC-CCCccccCccccCCCCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQ-VPSCKHVFHVECIHYWLHSN-TTCPLCRCSIVPITKLYN 158 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~-l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~~~~~ 158 (248)
++..|+||++.|.. .+. ++ |||.||..||..|+... ..||+||..+.......+
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~ 76 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC 76 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh
Confidence 46789999999973 555 76 99999999999999876 699999999865444333
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=89.32 Aligned_cols=51 Identities=25% Similarity=0.544 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC--CCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN--TTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 153 (248)
..+..|+||++.|.. .+.++.|||.||..||..|+..+ ..||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 346789999999984 44565599999999999999754 6899999975443
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.28 E-value=1.9e-12 Score=90.90 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=44.7
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccCCCCCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPITKLYN 158 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~ 158 (248)
..+..|+||++.|.+ .+.++ |||.||..||..|+.. +.+||+||..+.......+
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 357899999999984 55677 9999999999999986 7899999998865443333
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=89.07 Aligned_cols=49 Identities=27% Similarity=0.658 Sum_probs=41.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~ 152 (248)
..+..|+||++.|. ..+.++ |||.||..||..|+. ....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34678999999988 356677 999999999999996 45689999998754
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=87.67 Aligned_cols=49 Identities=29% Similarity=0.463 Sum_probs=40.6
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 153 (248)
++..|+||++.+..+ ..++ |||.||..||..|+. .+..||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 467899999998853 3466 999999999999994 567999999987653
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.3e-12 Score=102.01 Aligned_cols=48 Identities=33% Similarity=0.836 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
++..|+||++.|. .++.++ |||.||..||..|+..+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~---~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFI---EAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCS---SEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccC---CceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3568999999997 356788 99999999999999999999999998754
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=5e-12 Score=89.72 Aligned_cols=50 Identities=26% Similarity=0.582 Sum_probs=42.0
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc------CCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS------NTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 153 (248)
.++..|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 346789999999874 34677 9999999999999976 67899999987653
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=6.3e-12 Score=87.47 Aligned_cols=50 Identities=20% Similarity=0.445 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC--CCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN--TTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 153 (248)
....|+||++.+..++... .|+|.||..||.+||+.+ .+||+||..+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4578999999998765443 499999999999999866 8999999887543
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.1e-12 Score=89.28 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc------CCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS------NTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 153 (248)
.+..|+||++.|.. .+.++ |||.||..|+..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 46789999999874 44567 9999999999999976 78999999988653
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=91.09 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-------CCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-------NTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~ 153 (248)
.++..|+||++.|.. .+.++ |||.||..||..|+.. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 356789999999975 44567 9999999999999975 56899999988653
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.21 E-value=5.5e-12 Score=96.89 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=45.0
Q ss_pred CCCCcccccccccccC----CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIK----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
.++..|+||++.|..+ +.++.++ |||.||..||..|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999999754 4457777 999999999999999889999999988654
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=1.1e-11 Score=84.06 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=40.6
Q ss_pred CCccccccc-ccccCCcE-EEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccC
Q 025788 102 DSQCCVCLG-EFEIKEEL-LQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~-~~~~~~~~-~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 153 (248)
+..|+||++ .|..+... ..++ |||.||..||..|+.. ...||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 77765443 3466 9999999999999754 56899999988543
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=9e-12 Score=91.52 Aligned_cols=48 Identities=27% Similarity=0.706 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCcEEEc-CCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQV-PSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
++..|+||++.|.. .+.+ + |||.||..||..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 35789999999984 4455 6 99999999999999988999999998865
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=82.73 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=36.4
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLC 146 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 146 (248)
.++..|+||++.|.+ .+.++ |||.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 356789999999884 55677 999999999999997 45689998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.17 E-value=1.3e-11 Score=92.16 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCcEEEc-CCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQV-PSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
..+..|+||++.|.. ...+ + |||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 356789999999974 4454 7 999999999999999889999999988654
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=93.51 Aligned_cols=48 Identities=21% Similarity=0.501 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 152 (248)
.+..|+||++.|. ..+.++ |||.||..||..|+.. ...||+||..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4578999999998 456677 9999999999999974 4599999998865
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.14 E-value=3.5e-11 Score=87.01 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=40.2
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc--CCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS--NTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~ 151 (248)
..+..|+||++.|.. .+.++.|||.||..||..|+.. ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 456789999999984 4456559999999999999964 369999999873
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.8e-11 Score=90.57 Aligned_cols=51 Identities=25% Similarity=0.594 Sum_probs=41.2
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC---CCCccccCccccCCCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN---TTCPLCRCSIVPITKL 156 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~~~~ 156 (248)
...|+||++.|.. ...++ |||.||..||..|+..+ ..||+||..+......
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 5689999999874 34467 99999999999999754 4899999988654433
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=79.83 Aligned_cols=42 Identities=31% Similarity=0.866 Sum_probs=35.3
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLC 146 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~C 146 (248)
.+..|+||++.+... +.++ |+|.||..||..|+. .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467899999999853 4577 999999999999954 56789998
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=2.9e-11 Score=92.77 Aligned_cols=53 Identities=26% Similarity=0.631 Sum_probs=44.3
Q ss_pred CCCCcccccccccccC----CcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIK----EELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~----~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
+.+..|+||++.|... ...+.++ |||.||..||+.|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999999753 3346676 999999999999999999999999988653
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.09 E-value=7.9e-11 Score=94.40 Aligned_cols=49 Identities=33% Similarity=0.696 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 152 (248)
.+..|+||++.|.. .+..++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34589999999984 333347 9999999999999986 7899999998854
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.07 E-value=5.6e-11 Score=94.07 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=41.3
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC-CCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN-TTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 153 (248)
.+..|+||++.|.. .+.++ |||.||..||..|+... ..||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 35689999999873 55677 99999999999999764 4899999988765
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.07 E-value=1.2e-10 Score=82.08 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCCc-EEEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccCCC
Q 025788 100 TRDSQCCVCLGEFEIKEE-LLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPITK 155 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~-~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 155 (248)
+++..|+||++.+...+. +..++ |||.||..|+..|+. ....||.||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456789999998864322 22234 999999999999884 46789999998876443
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.05 E-value=4.7e-11 Score=80.88 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCcEEEc--CCCCCc-CCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQV--PSCKHV-FHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l--~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
++..|.||++.+.+ ..++ | |||. |+..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 46689999998763 4444 8 9999 8999999999888899999998854
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.04 E-value=7.7e-11 Score=89.36 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC-CCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN-TTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 153 (248)
..+..|+||++.+.. .+.++ |||.||..||..|+... ..||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 346789999999884 45677 99999999999999764 4999999988654
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=1.5e-10 Score=87.42 Aligned_cols=49 Identities=29% Similarity=0.630 Sum_probs=41.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 154 (248)
+..|+||++.|.. ...++ |||.||..||..|+.. ...||+||..+....
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 5789999999873 55577 9999999999999976 779999999886543
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.02 E-value=1.6e-10 Score=82.67 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
.+..|+||++.|. ..+.++ |||.|+..||..|+..+.+||+||..+....
T Consensus 13 ~~~~CpI~~~~m~---dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMT---DPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhc---CCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 4689999999998 466788 9999999999999998899999999876543
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=3.3e-11 Score=90.90 Aligned_cols=48 Identities=23% Similarity=0.687 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 152 (248)
++..|+||++.|.. .+.++ |||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45789999999883 55677 9999999999999965 6789999998853
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.01 E-value=1.3e-10 Score=78.44 Aligned_cols=51 Identities=16% Similarity=0.384 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
+.+..|.||++.+.+. .+..+| |||. ||..|+..|...+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3467899999986631 122348 9998 9999999999888899999998854
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.99 E-value=1.8e-10 Score=84.60 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=44.5
Q ss_pred CCCcccccccccccCCcEEEcCCCC-CcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCK-HVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
.+..|+||++.|. ..++++ || |.|+..||..|+..+.+||+||.++......
T Consensus 21 ~~~~CpI~~~~m~---dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 21 DEFLDPIMSTLMC---DPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp TTTBCTTTCSBCS---SEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred HhcCCcCcccccc---CCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 4679999999998 466788 99 9999999999998888999999988654433
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.99 E-value=1.3e-10 Score=85.69 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
.+..|+||++.|. ..+.++ |||.|+..||..|+..+.+||+||.++......
T Consensus 28 ~~~~CpI~~~~m~---dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 28 DEFRDPLMDTLMT---DPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp TTTBCTTTCSBCS---SEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred HhhCCcCccCccc---CCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 4678999999998 466788 999999999999998888999999988654433
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.96 E-value=3.3e-10 Score=101.94 Aligned_cols=49 Identities=27% Similarity=0.758 Sum_probs=42.2
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 154 (248)
...|+||++.+. .++.++ |||.||..|+..|+. ....||+||..+....
T Consensus 332 ~~~C~ICle~~~---~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBC---CEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCC---CeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 468999999986 467788 999999999999998 6889999999886543
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=2.4e-10 Score=75.21 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=38.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.++..|+||++.|.. .+.++ |||.||..|+..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 356789999999984 46677 9999999999874 5689999988754
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=2.2e-10 Score=79.77 Aligned_cols=45 Identities=24% Similarity=0.628 Sum_probs=38.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
++..|.||++.+. .+..+| |||. ||..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~---~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI---AIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC---CEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC---CEEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3568999999877 467788 9999 999999998 7899999988654
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.91 E-value=3.2e-10 Score=88.77 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC-CCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN-TTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~ 151 (248)
+.+..|+||++.|.. .+.++ |||.||..||..|+... ..||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456799999999984 45677 99999999999999755 48999999764
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=3.3e-10 Score=85.70 Aligned_cols=46 Identities=22% Similarity=0.565 Sum_probs=39.3
Q ss_pred CCCcccccccccccCCcEEEc-CCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQV-PSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.+..|+||++.|.. .+.+ + |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 46789999999974 4556 6 999999999999987 789999998854
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-09 Score=73.00 Aligned_cols=51 Identities=25% Similarity=0.660 Sum_probs=41.1
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccCCCCC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPITKLY 157 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 157 (248)
..++..|.||++... .+..+| |+|. ||..|+.. ...||+||..+......+
T Consensus 12 ~~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEEee
Confidence 345678999999866 577888 9999 99999974 478999999987655544
No 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.81 E-value=9.7e-10 Score=96.67 Aligned_cols=52 Identities=19% Similarity=0.582 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCcEE----EcCCCCCcCCHhHHHHHHhcC-----------CCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELL----QVPSCKHVFHVECIHYWLHSN-----------TTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~----~l~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~ 152 (248)
...+|+||++.+..+..+. ..+.|+|.||..|+.+||+.. ..||+||.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4568999999998733331 123599999999999999642 369999998753
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=78.66 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC------CCCcc--ccCc-cccCC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN------TTCPL--CRCS-IVPIT 154 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-~~~~~ 154 (248)
..+..|+||++.|.+ .+.++.|||.|+..||..|+..+ .+||+ |+.. +....
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 356789999999984 55663499999999999999753 48999 9876 54433
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=2.6e-09 Score=91.80 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPITK 155 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 155 (248)
....|+||++.|. .+++++ |||.||..||..|+.. ..+||+||.++.....
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBCS---SEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHhc---CCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC
Confidence 4678999999998 466788 9999999999999975 4569999998865443
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.2e-09 Score=73.27 Aligned_cols=46 Identities=26% Similarity=0.637 Sum_probs=37.3
Q ss_pred CCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccCCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPITK 155 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 155 (248)
+..|.||++.+. .+..+| |||. ||..|+.. ...||+||..+.....
T Consensus 25 ~~~C~IC~~~~~---~~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~ 71 (75)
T 2ecg_A 25 EKLCKICMDRNI---AIVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQK 71 (75)
T ss_dssp HHSCSSSCSSCC---CBCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCCB
T ss_pred CCCCCcCCCCCC---CEEEec-CCCHHHHHHHhhC----CCCCccCCceecCcEE
Confidence 568999999977 466778 9999 99999964 3789999998866433
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.73 E-value=3.7e-09 Score=84.92 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPI 153 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 153 (248)
.++..|+||++.|.. .+.++ |||.||..||..|+.. ...||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 356799999999984 45677 9999999999999975 45999999988654
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.70 E-value=3.1e-09 Score=74.89 Aligned_cols=50 Identities=28% Similarity=0.640 Sum_probs=40.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccCCCCCCC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPITKLYNP 159 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~ 159 (248)
+..|.||++.+. .+..+| |||. ||..|+..| ..||+||..+......+.+
T Consensus 18 ~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBC---CEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccC---cEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeC
Confidence 468999999876 577888 9999 999999877 4899999998765544433
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.70 E-value=1e-08 Score=68.33 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=37.1
Q ss_pred CCCCcccccccccccCCcEEEcCCCC--C---cCCHhHHHHHHh--cCCCCccccCccc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCK--H---VFHVECIHYWLH--SNTTCPLCRCSIV 151 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~--H---~fh~~Ci~~wl~--~~~~CP~Cr~~~~ 151 (248)
++...|.||+++. ++.+ ++| |. | .||..|+..|+. .+.+||+||..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3567899999983 3334 577 55 4 899999999996 3679999998764
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.64 E-value=1.3e-08 Score=82.50 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-CCCCccccCccccCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-NTTCPLCRCSIVPIT 154 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 154 (248)
....|+||++.|. .+++++ |||.|+..||..|+.. ..+||+||.++....
T Consensus 105 ~~f~CPI~~elm~---DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMR---EPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCS---SEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCC---CCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 4678999999998 466778 9999999999999975 347999999886543
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.63 E-value=1.3e-08 Score=73.82 Aligned_cols=48 Identities=25% Similarity=0.692 Sum_probs=39.3
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc--------CCCCcc--ccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS--------NTTCPL--CRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 149 (248)
+..+|+||++++...+.+...+ |+|.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4678999999998766665566 9999999999999852 237999 9987
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.43 E-value=3.5e-08 Score=87.94 Aligned_cols=45 Identities=29% Similarity=0.719 Sum_probs=38.5
Q ss_pred CCCcccccccccccCCcEEEcCCCCCc-CCHhHHHHHHhcCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHV-FHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
++..|+||++.+. .+..+| |||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~---~~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC---ceEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4578999999987 477788 9999 999999988 6899999988653
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.43 E-value=9e-08 Score=63.91 Aligned_cols=49 Identities=6% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCcccccccccccCCcEEEc-CCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 102 DSQCCVCLGEFEIKEELLQV-PSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
...|+||++.|.+ .+++ + |||.|.+.||.+|+..+.+||+++.++...+
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCC---CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 4679999999984 4566 6 9999999999999988788999998886544
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.4e-07 Score=80.40 Aligned_cols=52 Identities=23% Similarity=0.494 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC--CCCcc--ccCccccCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN--TTCPL--CRCSIVPITK 155 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~~~~ 155 (248)
.+..|+||++.|.. .++... |||.|++.||..|+..+ ..||+ ||..+.....
T Consensus 180 ~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 34679999999984 343345 99999999999999753 57999 9998765443
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.25 E-value=5e-07 Score=65.44 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=39.2
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-cCCCCccccCccccCC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-SNTTCPLCRCSIVPIT 154 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 154 (248)
.|.+|--.+. ...|..| |+|+||++|+..|.+ ..+.||.|+.++....
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4888876655 4678888 999999999999985 5789999999886543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.89 E-value=8e-06 Score=69.05 Aligned_cols=49 Identities=20% Similarity=0.498 Sum_probs=38.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcC--CCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSN--TTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 152 (248)
.-..|.||.+-...+.. .+.|+|.||..|+..|++.+ ..||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 35689999999886533 33599999999999999754 499999987543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.71 E-value=0.019 Score=41.18 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHH
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 136 (248)
++..|.||++++.......-+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3578999998754333333376 9999999999984
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.46 E-value=0.026 Score=37.70 Aligned_cols=46 Identities=24% Similarity=0.525 Sum_probs=33.6
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 150 (248)
.+..|.||.+. ..+..-..|...||..|++..|.. .-.||.|+...
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999743 345555569999999999888753 23799997543
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.12 E-value=0.042 Score=39.05 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=38.7
Q ss_pred CCCcccccccccccCCcEEEcCCCC-CcCCHhHHHHHHhcCCCCccccCccccCCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCK-HVFHVECIHYWLHSNTTCPLCRCSIVPITKL 156 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 156 (248)
+-..|-.|.-..+ .++ +|. |.+|..|+...|.....||+|..++......
T Consensus 27 G~~nCKsCWf~~k---~LV---~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLV---ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCS---SEE---ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccC---Cee---eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 4567999985543 333 264 9999999999999999999999988765444
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.92 E-value=0.12 Score=35.87 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=23.5
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHH
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 136 (248)
..|..|.||- .+..++...-- -|+-+||..|+.+.
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 3578999995 33322222112 48999999999996
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.84 E-value=0.035 Score=36.58 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=35.5
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRC 148 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~ 148 (248)
+++..|+||...+..+...+.--.|..-||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456789999998865555655556888899999854321 3457999975
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.36 E-value=0.1 Score=34.06 Aligned_cols=46 Identities=22% Similarity=0.616 Sum_probs=32.9
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRC 148 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 148 (248)
...+..|.||... ..+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999863 345555568899999999875432 337999964
No 79
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=91.27 E-value=0.32 Score=29.55 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhhccC
Q 025788 36 SIILFLLFYLFYLKRRA 52 (248)
Q Consensus 36 ~i~~~~~~~~~~~~~r~ 52 (248)
+++++.+.+.+|.|||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 33333334444444443
No 80
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=90.26 E-value=0.64 Score=28.25 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhccC
Q 025788 39 LFLLFYLFYLKRRA 52 (248)
Q Consensus 39 ~~~~~~~~~~~~r~ 52 (248)
++++.+++|+|+|+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 33344444444443
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.76 E-value=0.16 Score=40.83 Aligned_cols=49 Identities=20% Similarity=0.433 Sum_probs=35.7
Q ss_pred CCcccccccccccCCc---EEEcCCCCCcCCHhHHHH------HHh-----cCCCCccccCcc
Q 025788 102 DSQCCVCLGEFEIKEE---LLQVPSCKHVFHVECIHY------WLH-----SNTTCPLCRCSI 150 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~---~~~l~~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~~ 150 (248)
+..|+||...|..++. .+..-.|..-||..|+.- -+. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4569999999987763 666667999999999732 111 156899998653
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.59 E-value=0.14 Score=34.71 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=34.9
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh----cCCCCccccCcc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH----SNTTCPLCRCSI 150 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~----~~~~CP~Cr~~~ 150 (248)
.+...|.||..... ++.++..-.|.--||..|+..-.. ..-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34567999987753 445555557888999999975443 234799997654
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.24 E-value=0.11 Score=42.40 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=33.8
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCcc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCSI 150 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 150 (248)
..+..|.+|... ..+.....|...||..|+.+.+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999743 345555579999999999776542 23799998643
No 84
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=87.96 E-value=0.56 Score=28.50 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=4.7
Q ss_pred HHHHHhhhccC
Q 025788 42 LFYLFYLKRRA 52 (248)
Q Consensus 42 ~~~~~~~~~r~ 52 (248)
+.+++|+|+|+
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 33344444443
No 85
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.28 E-value=0.13 Score=41.09 Aligned_cols=46 Identities=33% Similarity=0.639 Sum_probs=32.9
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 150 (248)
.+..|.+|... | .+.....|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999844 3 35455568999999999776542 23799998643
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.19 E-value=0.11 Score=33.90 Aligned_cols=47 Identities=30% Similarity=0.680 Sum_probs=31.7
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCS 149 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 149 (248)
...+..|.||.+. + .+..-..|...||..|+..-+.. .-.||.|+..
T Consensus 6 d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456789999853 2 34444468889999999854432 2369999754
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.49 E-value=0.088 Score=33.69 Aligned_cols=46 Identities=28% Similarity=0.696 Sum_probs=31.5
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccC
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRC 148 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 148 (248)
...+..|.+|... + .+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4457789999864 3 44455568999999999864432 235888853
No 88
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=86.09 E-value=0.57 Score=35.34 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=33.8
Q ss_pred cccCCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH------h-----cCCCCccccC
Q 025788 96 EELRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL------H-----SNTTCPLCRC 148 (248)
Q Consensus 96 ~~~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~ 148 (248)
.+....+..|.||.+- .++..-..|...||..||..-+ . ..=.|++|+.
T Consensus 51 ~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred cCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3345567789999854 3455555688999999999752 1 1237999964
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.45 E-value=0.97 Score=34.65 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=33.9
Q ss_pred cCCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----------cCCCCccccC
Q 025788 98 LRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----------SNTTCPLCRC 148 (248)
Q Consensus 98 ~~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 148 (248)
....+..|.+|.+. .++.....|...||..||..-+. ..-.||+|+.
T Consensus 59 ~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34567899999854 34555556999999999997652 1237999974
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.92 E-value=0.73 Score=30.39 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=26.6
Q ss_pred CCCCcccccccccccCCcEEEcC-CCCCcCCHhHH
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVP-SCKHVFHVECI 133 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci 133 (248)
+....|.+|...+..++..+..- .|.--||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34568999999988777777776 68888999998
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.08 E-value=1.3 Score=30.12 Aligned_cols=49 Identities=18% Similarity=0.512 Sum_probs=33.2
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 150 (248)
....| ||...+..+...+..-.|..-||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 99988764555555556888899999842211 345899998654
No 92
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=81.77 E-value=0.8 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.346 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 025788 27 FIFSIPILFSIILFLLFYLFYLKRR 51 (248)
Q Consensus 27 i~~~i~il~~i~~~~~~~~~~~~~r 51 (248)
+..+++.+++++++.+...+|.|||
T Consensus 10 IaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred eHHHHHHHHHHHHHHHHhheEEeec
Confidence 3334433444444444444555554
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=81.76 E-value=0.64 Score=28.76 Aligned_cols=44 Identities=30% Similarity=0.648 Sum_probs=29.3
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRC 148 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 148 (248)
.|.||...-.. +.+..-..|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58889865332 344455569999999999754332 236999964
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=81.28 E-value=1.1 Score=27.89 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=30.3
Q ss_pred cccccccccccCCcEEEcC-CCCCcCCHhHHHHHH----hcCCCCcccc
Q 025788 104 QCCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWL----HSNTTCPLCR 147 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl----~~~~~CP~Cr 147 (248)
.|.+|...+..+...+.-- .|.--||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886666666655 588789999974321 2456899885
No 95
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.34 E-value=0.24 Score=32.72 Aligned_cols=45 Identities=27% Similarity=0.642 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccC
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRC 148 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 148 (248)
..+..|.||.+. + .+..-..|.-.||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356789999864 3 45455568899999999854432 236999964
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.22 E-value=0.97 Score=31.73 Aligned_cols=47 Identities=26% Similarity=0.616 Sum_probs=32.9
Q ss_pred CCCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCS 149 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 149 (248)
...+..|.+|... + .+.....|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4456789999864 3 34455568889999999775532 2379999743
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.15 E-value=0.6 Score=32.73 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCCCccccccccc-ccCCcEEEcCCCCCcCCHhHHHHHHh--cCCCCccccCcc
Q 025788 100 TRDSQCCVCLGEF-EIKEELLQVPSCKHVFHVECIHYWLH--SNTTCPLCRCSI 150 (248)
Q Consensus 100 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~~~ 150 (248)
+.+..|.||...- ...+.+.....|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567899998753 22335555557888999999975321 233799997543
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=79.89 E-value=0.29 Score=31.66 Aligned_cols=46 Identities=28% Similarity=0.725 Sum_probs=32.0
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 150 (248)
.+..|.+|... + .+..-..|.-.||..|+.+-+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 56789999864 3 44455569999999999854432 23699996543
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.68 E-value=0.45 Score=34.81 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=31.2
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 148 (248)
..|.||.+.-..++.+..-..|...||..|+++-|.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888653333445555569999999999765532 237999974
No 100
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=79.34 E-value=0.44 Score=37.48 Aligned_cols=48 Identities=17% Similarity=0.506 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH-----hcCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL-----HSNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~ 149 (248)
....| +|...+..+...+....|.--||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9998876555566666789899999984321 124589999753
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.40 E-value=0.19 Score=35.35 Aligned_cols=51 Identities=18% Similarity=0.422 Sum_probs=35.3
Q ss_pred CCCccccccccccc-CCcEEEcCCCCCcCCHhHHHHHHh--------cCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEI-KEELLQVPSCKHVFHVECIHYWLH--------SNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 151 (248)
.+..|.||...-.. +..+...-.|...||..|+..-|. ..-.|+.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35689999876432 245656667999999999976542 1337999976543
No 102
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=77.71 E-value=0.59 Score=34.00 Aligned_cols=38 Identities=16% Similarity=0.465 Sum_probs=26.4
Q ss_pred CCCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH 138 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~ 138 (248)
.++..|.||.+.=.. +.+..-..|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccc
Confidence 457789999876322 12334446999999999987764
No 103
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=77.20 E-value=1.6 Score=43.40 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCcEEEcCCCC-CcCCHhHHHHHHhcCCCCccccCccccCCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCK-HVFHVECIHYWLHSNTTCPLCRCSIVPITK 155 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 155 (248)
++..|+|-++-|. .++++| -| +.|-+.+|..|+..+.+||+=|.++.....
T Consensus 890 ~~F~cPIs~~lM~---DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred HHhCCcchhhHHh---CCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 3567999999998 466788 77 589999999999888999999988865443
No 104
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.96 E-value=0.3 Score=32.83 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH----hcCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL----HSNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~ 149 (248)
....| ||......++..+.--.|..-||..|+.--- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44568 7988766555555555688789999985431 134579999753
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.73 E-value=1.2 Score=29.13 Aligned_cols=50 Identities=18% Similarity=0.493 Sum_probs=34.2
Q ss_pred CCCCcccccccccc-cCCcEEEcCCCCCcCCHhHHHHHHh-------cCCCCccccCc
Q 025788 100 TRDSQCCVCLGEFE-IKEELLQVPSCKHVFHVECIHYWLH-------SNTTCPLCRCS 149 (248)
Q Consensus 100 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~ 149 (248)
.++..|.||..... .+..+..-..|.-.||..|+..-+. ..-.|+.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999997643 2345556567999999999875331 23479999643
No 106
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.76 E-value=0.32 Score=34.47 Aligned_cols=48 Identities=27% Similarity=0.502 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 149 (248)
++..|.||...-. ...++..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4567999987643 2345555579999999999743322 2369999653
No 107
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=75.57 E-value=6.8 Score=23.63 Aligned_cols=30 Identities=3% Similarity=0.028 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 025788 23 LYQAFIFSIPILFSIILFLLFYLFYLKRRA 52 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~~~~~~~r~ 52 (248)
...+.++++++++++.+.+.+|+...++.+
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhhhc
Confidence 344555556677777777777777766654
No 108
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=74.84 E-value=0.64 Score=37.33 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=30.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCS 149 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 149 (248)
+..|.+|.+. + .+.....|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 3 34344458889999999754432 2369999854
No 109
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.14 E-value=6.1 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 025788 24 YQAFIFSIPILFSIILFLLFYLFYLKRRAS 53 (248)
Q Consensus 24 ~~~i~~~i~il~~i~~~~~~~~~~~~~r~~ 53 (248)
-..++.++++++++++.+.+++...+++++
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 344555566667777777777777776664
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=74.03 E-value=4.4 Score=29.35 Aligned_cols=34 Identities=29% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCccccccccc-----ccCCcEEEcCCCCCcCCHhHHH
Q 025788 101 RDSQCCVCLGEF-----EIKEELLQVPSCKHVFHVECIH 134 (248)
Q Consensus 101 ~~~~C~ICl~~~-----~~~~~~~~l~~C~H~fh~~Ci~ 134 (248)
....|.+|+..- ..++++..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 356799998753 1233455555799999999995
No 111
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=73.45 E-value=2.2 Score=27.55 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=30.1
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLC 146 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~C 146 (248)
..|--|...|... ....-+.|++.||.+|=.---+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999988532 234566799999999943322445689988
No 112
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=73.42 E-value=5.9 Score=23.90 Aligned_cols=29 Identities=7% Similarity=0.086 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 025788 25 QAFIFSIPILFSIILFLLFYLFYLKRRAS 53 (248)
Q Consensus 25 ~~i~~~i~il~~i~~~~~~~~~~~~~r~~ 53 (248)
..++.++++++++++.+.+++...+++++
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 44555566666667777777777766653
No 113
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=72.62 E-value=3.4 Score=27.20 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=3.2
Q ss_pred CCCcCC
Q 025788 124 CKHVFH 129 (248)
Q Consensus 124 C~H~fh 129 (248)
|.|.|-
T Consensus 59 C~hr~q 64 (70)
T 2klu_A 59 SPHRFQ 64 (70)
T ss_dssp CCCCCC
T ss_pred CcHHHh
Confidence 555553
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.38 E-value=5.6 Score=27.79 Aligned_cols=52 Identities=19% Similarity=0.455 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCc--EEE-cCCCCCcCCHhHHHHHH-hcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEE--LLQ-VPSCKHVFHVECIHYWL-HSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~--~~~-l~~C~H~fh~~Ci~~wl-~~~~~CP~Cr~~~~~ 152 (248)
....|.||-+++-.... +.+ .-.|+--.|+.|++--. +.++.||-|+..+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34689999998643221 211 11477778999997655 468899999987753
No 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.90 E-value=1.5 Score=29.52 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=30.8
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHH------H---hcCCCCccccCc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW------L---HSNTTCPLCRCS 149 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w------l---~~~~~CP~Cr~~ 149 (248)
...| ||...+. +..++.--.|..-||..|+.-- + .....||.|+..
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3457 8988765 3345455568888999998321 1 246789999753
No 116
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.79 E-value=3.8 Score=27.34 Aligned_cols=49 Identities=20% Similarity=0.415 Sum_probs=33.3
Q ss_pred CCCCccccccccc-ccCCcEEEcCCCCCcCCHhHHHHHHh--cCCCCccccC
Q 025788 100 TRDSQCCVCLGEF-EIKEELLQVPSCKHVFHVECIHYWLH--SNTTCPLCRC 148 (248)
Q Consensus 100 ~~~~~C~ICl~~~-~~~~~~~~l~~C~H~fh~~Ci~~wl~--~~~~CP~Cr~ 148 (248)
..+..|.||.+.- ..++.+..-..|.-.||..|+..-.. ..-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998653 33445666667999999999964321 2336888864
No 117
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.69 E-value=0.81 Score=31.24 Aligned_cols=45 Identities=29% Similarity=0.650 Sum_probs=30.0
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-----CCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-----NTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 148 (248)
..|.||...-. +..+..--.|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 37889986432 3455555579999999999853321 236888864
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=69.73 E-value=1.9 Score=31.11 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=34.4
Q ss_pred CCcccccccccccCCcEEEcC-CCCCcCCHhHHHHHH---h-------cCCCCccccCcc
Q 025788 102 DSQCCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWL---H-------SNTTCPLCRCSI 150 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl---~-------~~~~CP~Cr~~~ 150 (248)
...|.||...+......+..- .|.--||..|+.--- + ....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999987666666654 588889999983211 0 345799998643
No 119
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=69.69 E-value=4.9 Score=27.56 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCcEEEcC-CCCCcCCHhHHHHHHhc-----CCCCccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVP-SCKHVFHVECIHYWLHS-----NTTCPLC 146 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~-~C~H~fh~~Ci~~wl~~-----~~~CP~C 146 (248)
....|.+|.+.+++..-+ ..| -=.|.||..|-...+++ .-.||.=
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 356899999999876555 333 12499999999998864 2356654
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.09 E-value=0.83 Score=30.53 Aligned_cols=44 Identities=32% Similarity=0.706 Sum_probs=28.3
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-----CCCCccccC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-----NTTCPLCRC 148 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 148 (248)
.|.||...-. +..+..--.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667775422 3345555568899999999854321 237898864
No 121
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.68 E-value=0.68 Score=34.47 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRC 148 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 148 (248)
...|..|...|..-..-.....||.+||..|..........|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 45899999998743222233369999999998766555677888854
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=68.41 E-value=2.4 Score=32.04 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCcccccccccc-cCCcEEEcCCCCCcCCHhHHHHHHhc----CCCCccccCc
Q 025788 100 TRDSQCCVCLGEFE-IKEELLQVPSCKHVFHVECIHYWLHS----NTTCPLCRCS 149 (248)
Q Consensus 100 ~~~~~C~ICl~~~~-~~~~~~~l~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 149 (248)
.++..|++|...|. ....-+....|.|.+|..|-..-... .-.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 45789999999993 32333444569999999885321010 1147777653
No 123
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=66.68 E-value=4.6 Score=31.44 Aligned_cols=47 Identities=28% Similarity=0.637 Sum_probs=33.1
Q ss_pred ccCCCCCcccccccccccCCcEEEcC--CCCCcCCHhHHHHHHhc----------CCCCcccc
Q 025788 97 ELRTRDSQCCVCLGEFEIKEELLQVP--SCKHVFHVECIHYWLHS----------NTTCPLCR 147 (248)
Q Consensus 97 ~~~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr 147 (248)
+.+..+..|.||-+. .++.... .|...||..||+.++.. .=.|=+|.
T Consensus 74 DeDG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CTTSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 344556789999853 4565554 58899999999998843 12588885
No 124
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=65.48 E-value=1.3 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.534 Sum_probs=30.6
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 148 (248)
+...| ||...+. ++.++.--.|..-||..|+.---. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45568 9987765 444555556888899999853221 2457888864
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=64.81 E-value=4.7 Score=29.21 Aligned_cols=46 Identities=24% Similarity=0.666 Sum_probs=29.9
Q ss_pred CCCCCcccccccccccCCcEEEcC--CCCCcCCHhHHHHHHhc----CCCCccccCcc
Q 025788 99 RTRDSQCCVCLGEFEIKEELLQVP--SCKHVFHVECIHYWLHS----NTTCPLCRCSI 150 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 150 (248)
...+..|.+|.+ +..++.-. .|...||..|+. |.. .-.||.|+-.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 345678999983 23454443 488899999997 432 23588775444
No 126
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=64.77 E-value=1.4 Score=31.35 Aligned_cols=44 Identities=16% Similarity=0.421 Sum_probs=29.3
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---cCCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---SNTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 148 (248)
..| ||......+ .++..-.|.--||..|+..=+. ..-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 356 887765544 4445556889999999865322 2347999973
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.43 E-value=1.6 Score=35.98 Aligned_cols=45 Identities=31% Similarity=0.691 Sum_probs=26.6
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc-----CCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS-----NTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 148 (248)
..|.+|...-. +..+...-.|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 35888875422 2344455569999999999854431 236999974
No 128
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.05 E-value=4.3 Score=29.55 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=23.7
Q ss_pred Cccccccccccc------CCcEEEcCCCCCcCCHhHHHHH
Q 025788 103 SQCCVCLGEFEI------KEELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 103 ~~C~ICl~~~~~------~~~~~~l~~C~H~fh~~Ci~~w 136 (248)
..|.||+..-.. ++.++.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 2345555569999999998754
No 129
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=63.79 E-value=4.5 Score=26.94 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=23.1
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHH
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY 135 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 135 (248)
..|.+|...|..-..-.--..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999874322222235999999999643
No 130
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=63.67 E-value=3.9 Score=28.50 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=25.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWL 137 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl 137 (248)
...|.+|...|..-..-.....||++||..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 457999999987433322333699999999976543
No 131
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.86 E-value=4.7 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHH
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 136 (248)
+...|.+|...|..-..-.-...||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 345799999999753322223369999999997554
No 132
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=62.84 E-value=3.9 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY 135 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 135 (248)
-..|.+|...|..-..-.-...||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3579999999874332223336999999999644
No 133
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=62.60 E-value=14 Score=21.19 Aligned_cols=7 Identities=0% Similarity=-0.425 Sum_probs=2.8
Q ss_pred HHHHhhh
Q 025788 43 FYLFYLK 49 (248)
Q Consensus 43 ~~~~~~~ 49 (248)
.++-|++
T Consensus 25 v~ieYrk 31 (36)
T 1pi7_A 25 VIIEGRG 31 (36)
T ss_pred HHHHHHH
Confidence 3334443
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=62.49 E-value=4.6 Score=27.57 Aligned_cols=34 Identities=26% Similarity=0.605 Sum_probs=24.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY 135 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 135 (248)
...|.+|...|..-..-.-...||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4579999999974332223336999999999754
No 135
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=62.39 E-value=3.6 Score=27.43 Aligned_cols=44 Identities=25% Similarity=0.623 Sum_probs=28.1
Q ss_pred CCCcccccccccccCCcEEEcCC--CC-CcCCHhHHHHHHh----cCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPS--CK-HVFHVECIHYWLH----SNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~~ 149 (248)
+...| ||..... + .++.--. |. .-||..|+. |. ..-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8987643 3 3444334 55 579999996 32 23479999753
No 136
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.29 E-value=4.8 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.503 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-------cCCCCccccCcc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-------SNTTCPLCRCSI 150 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~ 150 (248)
+...|.+|...|..-..-.-...||.+||..|....+. ....|-.|-..+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 44579999999875433223336999999999755321 123566665433
No 137
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.03 E-value=23 Score=22.26 Aligned_cols=9 Identities=11% Similarity=0.368 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 025788 23 LYQAFIFSI 31 (248)
Q Consensus 23 ~~~~i~~~i 31 (248)
+|.++..++
T Consensus 9 ~WiIi~svl 17 (54)
T 2l8s_A 9 LWVILLSAF 17 (54)
T ss_dssp THHHHHHHH
T ss_pred hHHHHHHHH
Confidence 344333333
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.86 E-value=2.3 Score=28.84 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=30.1
Q ss_pred CCCcccccccccccCCcEEEcC--CCCCcCCHhHHHHHH---------hcCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVP--SCKHVFHVECIHYWL---------HSNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~ 149 (248)
....| ||......+ .++..- .|..-||..|+.--- .....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 898874433 444444 588899999984321 124579999753
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.65 E-value=4.2 Score=33.09 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHY 135 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~ 135 (248)
+..|.+|...|..-..-.-...||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999874332223336999999999654
No 140
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.97 E-value=5 Score=28.18 Aligned_cols=44 Identities=25% Similarity=0.623 Sum_probs=27.6
Q ss_pred CCCcccccccccccCCcEEEcCC--CC-CcCCHhHHHHHHh----cCCCCccccCc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPS--CK-HVFHVECIHYWLH----SNTTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~~ 149 (248)
+...| ||..... + .++..-. |. .-||..|+. |. ..-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34567 9988643 3 3333334 55 579999996 32 24479999754
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=57.36 E-value=4.7 Score=33.03 Aligned_cols=35 Identities=17% Similarity=0.505 Sum_probs=25.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w 136 (248)
+..|.+|...|..-..-.-...||++||..|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 45899999998754322233369999999997654
No 142
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.98 E-value=6.1 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=22.4
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIH 134 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~ 134 (248)
-..|.+|...|..-..-.-...||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 457999999986432222222599999998853
No 143
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=54.20 E-value=3.2 Score=26.58 Aligned_cols=43 Identities=26% Similarity=0.631 Sum_probs=27.7
Q ss_pred CCCcccccccccccCCcEEEcCC--CC-CcCCHhHHHHHHh----cCCCCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPS--CK-HVFHVECIHYWLH----SNTTCPLCRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~ 148 (248)
+...| ||..... + .++.--. |. .-||..|+. |. ..-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 9987642 3 4544445 65 589999996 32 2347999964
No 144
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.86 E-value=32 Score=21.59 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 025788 22 KLYQAFIFSIPIL 34 (248)
Q Consensus 22 ~~~~~i~~~i~il 34 (248)
-+|.++..+++.+
T Consensus 11 p~wiIi~svl~GL 23 (54)
T 2knc_A 11 PIWWVLVGVLGGL 23 (54)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 3455444444333
No 145
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=53.76 E-value=1.6 Score=29.68 Aligned_cols=44 Identities=32% Similarity=0.716 Sum_probs=28.2
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhc----C-CCCccccC
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHS----N-TTCPLCRC 148 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 148 (248)
.|.||...-. ++.+..--.|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4667765533 2344455568899999999865532 2 37999975
No 146
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.25 E-value=5.6 Score=28.35 Aligned_cols=11 Identities=27% Similarity=0.972 Sum_probs=10.4
Q ss_pred CCHhHHHHHHh
Q 025788 128 FHVECIHYWLH 138 (248)
Q Consensus 128 fh~~Ci~~wl~ 138 (248)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 147
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.00 E-value=5.7 Score=28.27 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=10.4
Q ss_pred CCHhHHHHHHh
Q 025788 128 FHVECIHYWLH 138 (248)
Q Consensus 128 fh~~Ci~~wl~ 138 (248)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.68 E-value=6.5 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=29.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+-|-..+..++.+ +.. -+..||..|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEY-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECS-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccE-EEE-CccccCcccC--------eECCCCCcCCC
Confidence 35799999988764443 222 5778998885 79999887754
No 149
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.41 E-value=6.6 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=29.3
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
..|+.|-+.+...+.++.. -+..||.+|+ .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 4799999888865444322 4678998885 799998877543
No 150
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=51.97 E-value=4.3 Score=26.77 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=4.5
Q ss_pred CCccccCcc
Q 025788 142 TCPLCRCSI 150 (248)
Q Consensus 142 ~CP~Cr~~~ 150 (248)
.|-.|+..|
T Consensus 29 ~C~~C~~~L 37 (76)
T 1iml_A 29 KCEKCGKTL 37 (76)
T ss_dssp BCTTTCCBC
T ss_pred CccccCccC
Confidence 455555444
No 151
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.85 E-value=9.8 Score=33.85 Aligned_cols=50 Identities=28% Similarity=0.541 Sum_probs=34.9
Q ss_pred cccCCCCCcccccccccccCCcEEEcC--CCCCcCCHhHHHHHHhc----------CCCCccccCc
Q 025788 96 EELRTRDSQCCVCLGEFEIKEELLQVP--SCKHVFHVECIHYWLHS----------NTTCPLCRCS 149 (248)
Q Consensus 96 ~~~~~~~~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr~~ 149 (248)
.+.+..+..|.+|-+. .++.... .|...||..||+.++.. .=.|=+|.-.
T Consensus 87 ~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3345567789999854 3455555 68899999999999832 2368888643
No 152
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=50.92 E-value=6.6 Score=30.30 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=30.5
Q ss_pred CCCccccccccccc--CCcEEEcCCCCCcCCHhHHHHHHhcC--CCCccccCc
Q 025788 101 RDSQCCVCLGEFEI--KEELLQVPSCKHVFHVECIHYWLHSN--TTCPLCRCS 149 (248)
Q Consensus 101 ~~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~ 149 (248)
.+..|++|...|.. +... ....|+|.+|..|- .|+... -.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~-~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRR-QCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCE-ECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCC-cCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 57899999998743 3333 33359999999997 233221 257777653
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.40 E-value=8.6 Score=25.83 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccCC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPIT 154 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 154 (248)
....|+-|-+.+...+.+. - -+..||..|+ .|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 3467999999887555543 2 5678999995 7999988876543
No 154
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=49.80 E-value=3.4 Score=36.83 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-------cCCCCccccCc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-------SNTTCPLCRCS 149 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~ 149 (248)
...|.+|...|..-..-.....||++||..|...++. ....|-.|-..
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp -------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 4579999998864322222225999999999977652 13467777543
No 155
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.73 E-value=5.2 Score=26.36 Aligned_cols=40 Identities=23% Similarity=0.517 Sum_probs=30.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+.|-+.+..++.+. . -+..||.+|+ .|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCCC--------CCCCCCCccCC
Confidence 457999999888666543 2 5678998885 79999988764
No 156
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=49.34 E-value=1.4 Score=29.11 Aligned_cols=44 Identities=23% Similarity=0.544 Sum_probs=26.1
Q ss_pred CcccccccccccCCcEEEcC--CCCCcCCHhHHHHHH---h-----cCCCCccccC
Q 025788 103 SQCCVCLGEFEIKEELLQVP--SCKHVFHVECIHYWL---H-----SNTTCPLCRC 148 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~--~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 148 (248)
..| ||......+. ++..- .|.--||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 456 8976555443 43442 377779999973210 0 1357999974
No 157
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=49.07 E-value=4 Score=26.17 Aligned_cols=42 Identities=26% Similarity=0.648 Sum_probs=26.6
Q ss_pred CCcccccccccccCCcEEEcCC--CC-CcCCHhHHHHHHh----cCCCCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPS--CK-HVFHVECIHYWLH----SNTTCPLCRC 148 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl~----~~~~CP~Cr~ 148 (248)
...| ||..... + .++.--. |. .-||..|+. |. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8987643 3 4444445 54 579999997 43 2347999864
No 158
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.92 E-value=9.8 Score=24.57 Aligned_cols=41 Identities=22% Similarity=0.497 Sum_probs=29.3
Q ss_pred CCccccccccccc--CCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEI--KEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+-|-+.+.. .+.++ .. -+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceE-EE-CCcccCcccC--------EeccCCCcCCC
Confidence 4579999988875 22332 22 5788999985 79999988753
No 159
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.84 E-value=9.9 Score=25.23 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=30.8
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+.|-+.+..++.++. . -+..||.+|+ .|-.|++.|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-Y-KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-C-SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEE-E-CccccccccC--------chhhCCCccCCC
Confidence 3579999998886655432 2 5678999885 799998887543
No 160
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.54 E-value=10 Score=24.45 Aligned_cols=40 Identities=30% Similarity=0.590 Sum_probs=27.0
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
...|+.|-+.+...+..+ .. -+..||..|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VA-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-EC-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE-EE-CCCeEcccCC--------cccccCCcCC
Confidence 357888888776533332 22 4678888885 7888888774
No 161
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.40 E-value=8.2 Score=25.87 Aligned_cols=40 Identities=28% Similarity=0.645 Sum_probs=30.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
....|+-|-+.+..++.+.. -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 34679999998876665543 4678999885 7999988775
No 162
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.17 E-value=2 Score=27.71 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=23.8
Q ss_pred CcccccccccccCCcEEEcC--C--CCCcCCHhHHHHHHh
Q 025788 103 SQCCVCLGEFEIKEELLQVP--S--CKHVFHVECIHYWLH 138 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~--~--C~H~fh~~Ci~~wl~ 138 (248)
..|+-|...++..+....+. . |++.|+..|...|-.
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 46888888877666544443 2 567777777777653
No 163
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.22 E-value=8.2 Score=25.28 Aligned_cols=42 Identities=21% Similarity=0.553 Sum_probs=30.2
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+-|-+.+...+.+... -+..||..|+ .|-.|+..+...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 46799999988754444322 4678998885 799998887653
No 164
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=45.86 E-value=37 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 23 LYQAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
+...++.++.++.++++++--+-|+.
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 55666667765544443333333333
No 165
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.28 E-value=18 Score=31.91 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=31.4
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccCccccCC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRCSIVPIT 154 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~~~ 154 (248)
..|+|-+..|.. .++-.. |.|.-|++- ..||. ..-.||+|.+.+...+
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHH
Confidence 469988777763 455555 999866554 33442 2347999998775443
No 166
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=44.50 E-value=48 Score=19.61 Aligned_cols=11 Identities=0% Similarity=-0.001 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 025788 23 LYQAFIFSIPI 33 (248)
Q Consensus 23 ~~~~i~~~i~i 33 (248)
+|.++..+++.
T Consensus 10 ~wiIi~s~l~G 20 (42)
T 2k1a_A 10 IWWVLVGVLGG 20 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 44444444333
No 167
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=43.30 E-value=6.6 Score=26.23 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=30.9
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccCc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRCS 149 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 149 (248)
.-.||...+..+..++.--.|.--||..|+.---. ....||.|+..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 34489887654555655556888899999943211 24579999754
No 168
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=43.29 E-value=8.3 Score=28.10 Aligned_cols=38 Identities=24% Similarity=0.581 Sum_probs=25.3
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.|+-|-..+...+.++ . .-+..||..|+ .|-.|.+.|.
T Consensus 10 ~C~~C~~~I~~~e~~~-~-a~~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTM-R-VKDKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCC-C-CSSCCCCTTTC--------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEE-E-ECCcccccccC--------ccccCCCCCC
Confidence 6888888776544332 1 14677888885 6888877773
No 169
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=43.27 E-value=5.2 Score=36.80 Aligned_cols=47 Identities=26% Similarity=0.599 Sum_probs=32.0
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh-----cCCCCccccCcc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH-----SNTTCPLCRCSI 150 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 150 (248)
..| ||...+..+..++..-.|.--||..|+.---. ..-.||.|+...
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 345 99887764555666667988899999843211 235799998643
No 170
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=43.18 E-value=21 Score=31.38 Aligned_cols=48 Identities=19% Similarity=0.370 Sum_probs=30.9
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHh---c--CCCCccccCccccCC
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLH---S--NTTCPLCRCSIVPIT 154 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~---~--~~~CP~Cr~~~~~~~ 154 (248)
..|+|-+..+.. .+|-.. |.|.=|++- ..||. + .-.||+|.+.+...+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHHH
Confidence 459988777763 355555 999855543 33442 2 347999998875543
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.52 E-value=11 Score=24.91 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=28.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+-|-+.+.. +. +.- -+..||.+|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKL-RDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EEC-SSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccC-cE--EEE-CcceeCcCcC--------eeCCCCCCCCC
Confidence 4579999988774 32 232 6788999996 79999888753
No 172
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.26 E-value=18 Score=24.51 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=30.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+-|-+.+...+.+ .. -+..||..|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 45799999888765544 23 6778998885 788898877654
No 173
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=42.25 E-value=3.2 Score=29.15 Aligned_cols=45 Identities=16% Similarity=0.358 Sum_probs=26.6
Q ss_pred CCCcccccccccccCCcEEEcCCCC---CcCCHhHHHHHH--hcCCCCcc-ccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCK---HVFHVECIHYWL--HSNTTCPL-CRC 148 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~---H~fh~~Ci~~wl--~~~~~CP~-Cr~ 148 (248)
+...| ||..... + .++..-.|. --||..|+.--- ...-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 44567 9987533 3 344444444 579999985110 12447999 973
No 174
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.22 E-value=16 Score=24.17 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=29.2
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+-|-+.+. ++.+ . .-+..||.+|+ .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~-a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--I-FKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--C-CSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--E-ECcceeCCCCC--------EeCCCCCccCCC
Confidence 457999998887 3333 2 26778999885 799999887643
No 175
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.79 E-value=11 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.553 Sum_probs=30.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+-|-..+..++.+... -+..||..|. .|-.|...+...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45799999988866654322 4667998886 799998887554
No 176
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.60 E-value=12 Score=20.36 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=19.5
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHH
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECI 133 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci 133 (248)
..|+.|-......+.+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 46889988877655543 25678998883
No 177
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.18 E-value=11 Score=24.76 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=28.5
Q ss_pred CCccccccccccc--CCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEI--KEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~--~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
...|+.|-+.+.. .... +.- -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEE-CCcccCcccC--------ChhhCCCcCC
Confidence 3579999988874 2233 222 5678999995 7999988775
No 178
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.99 E-value=18 Score=24.50 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
....|+-|-+.+.. +.+ .- -+..||.+|+ .|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTTC--------CCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccCC--------EecCCCCCCCCC
Confidence 34579999988874 222 22 6788999995 799999887653
No 179
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.47 E-value=3.8 Score=26.50 Aligned_cols=44 Identities=25% Similarity=0.609 Sum_probs=26.9
Q ss_pred CCcccccccccccCCcEEEcCC--CC-CcCCHhHHHHHH--hcCCCCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPS--CK-HVFHVECIHYWL--HSNTTCPLCRC 148 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~--C~-H~fh~~Ci~~wl--~~~~~CP~Cr~ 148 (248)
...| ||..... + .++.--. |. .-||..|+.--- ...-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4556 9987632 3 4444445 54 689999996210 12347999964
No 180
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.44 E-value=2.2 Score=29.46 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=14.5
Q ss_pred EEcCCCCCcCCHhHHHHH
Q 025788 119 LQVPSCKHVFHVECIHYW 136 (248)
Q Consensus 119 ~~l~~C~H~fh~~Ci~~w 136 (248)
+..+.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 455569999999998888
No 181
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=39.99 E-value=5.7 Score=22.58 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=8.4
Q ss_pred CCccccccccccc
Q 025788 102 DSQCCVCLGEFEI 114 (248)
Q Consensus 102 ~~~C~ICl~~~~~ 114 (248)
...|+||+.++..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 4567777766653
No 182
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.48 E-value=11 Score=23.93 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=28.5
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+-|-+.+. ++. +.. -+..||..|+ .|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCcC--------EECCCCCCCCC
Confidence 357999998887 432 333 5778998885 79999888754
No 183
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.39 E-value=19 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.516 Sum_probs=24.0
Q ss_pred CCCCcccccccccccCCcEEEcCCC-CCcCCHhHHHHH
Q 025788 100 TRDSQCCVCLGEFEIKEELLQVPSC-KHVFHVECIHYW 136 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l~~C-~H~fh~~Ci~~w 136 (248)
++..-|.||.++- .++-+. | +-+||..|....
T Consensus 6 ee~pWC~ICneDA----tlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDA----TLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCC----CEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCC----eEEecC-CCCceehHHHHHHH
Confidence 3456799999882 477776 9 678999997664
No 184
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.26 E-value=5.8 Score=26.44 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=28.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+.|-+.+..++.+. . -+..||.+|+ .|-.|+..|...
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--C-DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--E-TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEE--e-CCcccccccC--------ccCCCCCCCCCC
Confidence 457999998887665443 2 5678888885 688898877543
No 185
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.11 E-value=5.9 Score=28.56 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=14.8
Q ss_pred CCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 123 SCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 123 ~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
.||+.|. .-+.....||.|+..-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 5999981 1112346899998754
No 186
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.88 E-value=40 Score=22.76 Aligned_cols=8 Identities=0% Similarity=0.023 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 025788 25 QAFIFSIP 32 (248)
Q Consensus 25 ~~i~~~i~ 32 (248)
.++..+++
T Consensus 12 ~Iv~gvi~ 19 (79)
T 2knc_B 12 VVLLSVMG 19 (79)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 187
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.94 E-value=9.7 Score=27.92 Aligned_cols=38 Identities=21% Similarity=0.592 Sum_probs=28.7
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..|+-|-..+.....+. - -+..||..|+ .|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLY--A-MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEE--E-TTEEEETTTS--------BCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEE--e-CCcEEccccc--------CcCcCCCccc
Confidence 57999998887443232 2 5778999995 7999998886
No 188
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.45 E-value=17 Score=23.15 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=28.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccccC
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVPI 153 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 153 (248)
...|+-|-+.+. ++.+. . -+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~-~~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIK--A-MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCC-SCCEE--E-TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEec-ceEEE--E-CcccccccCC--------EeCCCCCcCCCC
Confidence 457999988876 33332 2 4678898885 788998877654
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.63 E-value=18 Score=23.49 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=26.7
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..|+-|-..+.. +.+ . .-+..||.+|+ .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~v--~-a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--E-AGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--C-CSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--E-eCCCCCCCCcC--------EeCCCCCCCC
Confidence 478889887763 222 2 36788998885 7889988876
No 190
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=34.15 E-value=6.8 Score=24.14 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=26.3
Q ss_pred ccccccccCCcEEEcCCCCCcCCHhHHHHHH---hcCCCCccccC
Q 025788 107 VCLGEFEIKEELLQVPSCKHVFHVECIHYWL---HSNTTCPLCRC 148 (248)
Q Consensus 107 ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl---~~~~~CP~Cr~ 148 (248)
||..... +..++.--.|.--||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6776554 44455555688889999985322 13457888864
No 191
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.37 E-value=2.8 Score=28.55 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=12.7
Q ss_pred CCCCcCCHhHHHHH
Q 025788 123 SCKHVFHVECIHYW 136 (248)
Q Consensus 123 ~C~H~fh~~Ci~~w 136 (248)
.|+|.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999888
No 192
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.20 E-value=16 Score=25.92 Aligned_cols=41 Identities=15% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
+..|++|..++....... +|..|-.. +.....||-|..++.
T Consensus 32 ~~~CP~Cq~eL~~~g~~~--------hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHA--------RCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETTEE--------EETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecCCEE--------ECccccch-hhccccCcchhhHHH
Confidence 368999998876432222 23333221 234557999988764
No 193
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.15 E-value=15 Score=24.19 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=27.6
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|+.|-+.+. +..+ .. -+..||.+|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFM--VA-GEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SCCB--CC-TTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ceEE--EE-CCceeccccC--------CccCCCCccCC
Confidence 46999998877 3322 22 5788998885 79999888754
No 194
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.85 E-value=17 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 101 RDSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 101 ~~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
....|+-|-+.+. ++.+ .. -+..||.+|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VA-LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EE-TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EE-CCccccccCC--------ccCCCCCCCCC
Confidence 3467999998885 3333 22 5788999985 79999988864
No 195
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.80 E-value=17 Score=23.99 Aligned_cols=38 Identities=26% Similarity=0.689 Sum_probs=28.0
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|+-|-..+. ++.+. . -+..||.+|+ .|-.|++.|..
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTTS--------SCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE--E-CCceeCccCC--------ccccCCCCCCC
Confidence 47999998877 33332 2 5678999885 79999888754
No 196
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.70 E-value=21 Score=23.55 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=28.3
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|+.|-..+..++.+. .. =+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-FY-EDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-CC-SSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEE-Ee-CCccccccCC--------eecCCCCccCC
Confidence 47999998887433332 21 4678999885 79999887753
No 197
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.36 E-value=24 Score=22.43 Aligned_cols=39 Identities=23% Similarity=0.543 Sum_probs=27.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+-|-+.+.. +.+ .. -+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCCC--------ccCCCCCcCCc
Confidence 3579999888763 332 22 5778998885 78999887743
No 198
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=30.52 E-value=12 Score=34.11 Aligned_cols=49 Identities=18% Similarity=0.484 Sum_probs=33.1
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHH---Hh--cCCCCccccCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYW---LH--SNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~w---l~--~~~~CP~Cr~~~~ 151 (248)
....||...+..+...+..-.|.--||..|+.-- .. ..-.||.|+....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3456898877655556666678888999998421 11 3458999976543
No 199
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.93 E-value=1e+02 Score=19.20 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025788 23 LYQAFIFSIPILFSIILFLLFYLFYL 48 (248)
Q Consensus 23 ~~~~i~~~i~il~~i~~~~~~~~~~~ 48 (248)
+...++.++.++.++++++--+-|+.
T Consensus 15 Ii~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 44455555555554444443333343
No 200
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.21 E-value=27 Score=23.87 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=5.0
Q ss_pred cccccccccc
Q 025788 104 QCCVCLGEFE 113 (248)
Q Consensus 104 ~C~ICl~~~~ 113 (248)
.|+.|..++.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 4555555444
No 201
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=27.67 E-value=13 Score=20.04 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=7.8
Q ss_pred CCCccccCccc
Q 025788 141 TTCPLCRCSIV 151 (248)
Q Consensus 141 ~~CP~Cr~~~~ 151 (248)
..||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 46899986554
No 202
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.87 E-value=22 Score=23.04 Aligned_cols=40 Identities=15% Similarity=0.428 Sum_probs=28.1
Q ss_pred Cccccccccccc---CCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEI---KEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~---~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|+-|-..+.. ....+ .. =+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AY-EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EE-TTEEEETTTC--------BCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeE-EE-CcceeCcccC--------EehhcCCCCCC
Confidence 579999988874 22332 22 4678998885 79999988753
No 203
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.32 E-value=35 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=21.3
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
..|..|...+... .. ... =+..||..|..+. ....|..|...|.
T Consensus 34 F~C~~C~~~L~~~-~~-~~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANE-TF-VAK-DNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSS-CC-EEE-TTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred CcccccCCCCCcC-ee-ECc-CCEEEChhHhhhh--cCCccccCCCccc
Confidence 4566666655321 11 111 3455666665321 2345666766664
No 204
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.25 E-value=24 Score=27.54 Aligned_cols=38 Identities=29% Similarity=0.754 Sum_probs=19.1
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.|..|-..+...+.++. . -++.||..|. .|-.|.+.|.
T Consensus 71 ~C~~C~~~I~~~e~~i~-a-~~~~~H~~CF--------~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-A-QGNVYHLKCF--------TCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE-E-TTEEECGGGC--------BCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE-c-CCCEEeCCCC--------eECCCCCCCC
Confidence 46666655543332211 1 3556666663 5666665553
No 205
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.06 E-value=33 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.502 Sum_probs=26.3
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
...|+-|-+.+.. +.+. . -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--Y-QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--E-TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEE--E-CccccccCcC--------EECCCCCCCC
Confidence 3578888888763 3332 2 4677888885 7888888775
No 206
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.89 E-value=23 Score=23.18 Aligned_cols=38 Identities=18% Similarity=0.543 Sum_probs=27.3
Q ss_pred CcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 103 SQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 103 ~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
..|+-|-+.+.. +.+ .. -+..||..|+ .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~~-~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GGV--TY-RDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCS-CCE--ES-SSSEECTTTC--------BCSSSCCBCTT
T ss_pred CcCCCCCCEecC-cEE--EE-CCchhhhhhC--------CcccCCCcCCC
Confidence 579999888764 322 23 5778998885 79999888743
No 207
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=25.12 E-value=79 Score=20.22 Aligned_cols=35 Identities=17% Similarity=0.445 Sum_probs=28.9
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCC-HhHHHHH
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFH-VECIHYW 136 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh-~~Ci~~w 136 (248)
...|+-|...+..|+........-|.|| ..||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 5689999999999998877767889988 4687765
No 208
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.22 E-value=30 Score=21.73 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=9.5
Q ss_pred CCccccccccccc
Q 025788 102 DSQCCVCLGEFEI 114 (248)
Q Consensus 102 ~~~C~ICl~~~~~ 114 (248)
-..|++|...+..
T Consensus 10 iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 10 ILACPACHAPLEE 22 (56)
T ss_dssp SCCCSSSCSCEEE
T ss_pred heeCCCCCCccee
Confidence 4579999887653
No 209
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.13 E-value=32 Score=24.40 Aligned_cols=12 Identities=0% Similarity=-0.313 Sum_probs=5.4
Q ss_pred CCcCCHhHHHHH
Q 025788 125 KHVFHVECIHYW 136 (248)
Q Consensus 125 ~H~fh~~Ci~~w 136 (248)
+..||..|...-
T Consensus 52 g~~yC~~~y~~~ 63 (114)
T 1j2o_A 52 GRKLCRRDYLRL 63 (114)
T ss_dssp TBCCCHHHHHHH
T ss_pred CeeechHHHHHH
Confidence 334555554443
No 210
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=23.08 E-value=29 Score=21.79 Aligned_cols=39 Identities=18% Similarity=0.501 Sum_probs=27.5
Q ss_pred cccccccccccCCcEEEcCCCCCcCC--HhHHHHHHhcCCCCccccCcccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFH--VECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
.|+-|-+.+..++..+. . -+..|| .+|+ .|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~CF--------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT-Y-NNFSWHASTECF--------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEE-E-TTEEEETTTTTS--------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEE-E-CCCccCCCCCCE--------ECCCCCCcCCC
Confidence 58889888776433322 2 567899 8885 79999888753
No 211
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.59 E-value=20 Score=23.71 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=12.6
Q ss_pred HHHHhcCCCCccccCcccc
Q 025788 134 HYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 134 ~~wl~~~~~CP~Cr~~~~~ 152 (248)
+.||..--.||.|+.++..
T Consensus 2 d~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKL 20 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEE
T ss_pred ChHHHhheeCCCCCCcCeE
Confidence 3455555689999987653
No 212
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.40 E-value=58 Score=23.31 Aligned_cols=49 Identities=4% Similarity=-0.092 Sum_probs=33.7
Q ss_pred CCccccccccccc-CCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEI-KEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
-..|..|...+.. +... ... =+..||..|....+.....|-.|...|..
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3678888887752 2222 222 56789999988876554589999988865
No 213
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.15 E-value=26 Score=26.83 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=15.1
Q ss_pred cCCCCCcCCHhHHHHHHhcCCCCccccCcc
Q 025788 121 VPSCKHVFHVECIHYWLHSNTTCPLCRCSI 150 (248)
Q Consensus 121 l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 150 (248)
...|||.|-.. .....||.|..++
T Consensus 135 C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 135 CIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp ESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCCCcccCC------CCCCcCCCCCCcc
Confidence 33588887532 2234799998765
No 214
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.78 E-value=86 Score=20.87 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 025788 20 QLKLYQAFIF 29 (248)
Q Consensus 20 ~~~~~~~i~~ 29 (248)
.+.+-..++.
T Consensus 18 tLRigGLifA 27 (74)
T 2zxe_G 18 RLRVVGLIVA 27 (74)
T ss_dssp HHHHHHHHHH
T ss_pred HheeccchhH
Confidence 3343333333
No 215
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.57 E-value=10 Score=32.75 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCCCcccccccccccCCcEEEc-C-CCC--CcCCHhHHHHHHhcCCCCccccCc
Q 025788 100 TRDSQCCVCLGEFEIKEELLQV-P-SCK--HVFHVECIHYWLHSNTTCPLCRCS 149 (248)
Q Consensus 100 ~~~~~C~ICl~~~~~~~~~~~l-~-~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~ 149 (248)
.....|++|-..-... +... . .=| +.+|..|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3467899998765422 1110 0 012 445666777786667799999754
No 216
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.03 E-value=34 Score=26.15 Aligned_cols=38 Identities=18% Similarity=0.600 Sum_probs=19.3
Q ss_pred cccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCccc
Q 025788 104 QCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIV 151 (248)
Q Consensus 104 ~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 151 (248)
.|..|...+...+.++ .. -++.||..|. .|-.|+..|.
T Consensus 67 ~C~~C~~~I~~~~~v~-~a-~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVR-RA-QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEE-EE-TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccCCCcEEE-Ec-CCceEeeCCC--------cCCCCCCCCC
Confidence 4555555544332221 11 4555666663 5666666654
No 217
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.68 E-value=37 Score=26.53 Aligned_cols=40 Identities=20% Similarity=0.479 Sum_probs=28.6
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+.|-..+..++.+.. -+..||.+|+ .|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCCC
Confidence 3469999888876555542 4677888884 78888887754
No 218
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.63 E-value=2e+02 Score=19.24 Aligned_cols=11 Identities=9% Similarity=-0.481 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 025788 25 QAFIFSIPILF 35 (248)
Q Consensus 25 ~~i~~~i~il~ 35 (248)
.+.+.+++++.
T Consensus 29 GAg~AAv~f~~ 39 (77)
T 2dw3_A 29 GAGWAGGVFFG 39 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 33444444333
No 219
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.63 E-value=33 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=21.6
Q ss_pred CCCCCccccccccccc-CCcEEEcCCCCCcCCHhH
Q 025788 99 RTRDSQCCVCLGEFEI-KEELLQVPSCKHVFHVEC 132 (248)
Q Consensus 99 ~~~~~~C~ICl~~~~~-~~~~~~l~~C~H~fh~~C 132 (248)
...+..|+.|.+.|-. .+.-.+-+.|.|..|.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 3456789999998752 111223335888777766
No 220
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.47 E-value=31 Score=22.68 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=27.7
Q ss_pred CCcccccccccccCCcEEEcCCCCCcCCHhHHHHHHhcCCCCccccCcccc
Q 025788 102 DSQCCVCLGEFEIKEELLQVPSCKHVFHVECIHYWLHSNTTCPLCRCSIVP 152 (248)
Q Consensus 102 ~~~C~ICl~~~~~~~~~~~l~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 152 (248)
...|+-|-..+. +..+ .. -+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPIL-DRIL--RA-MGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCC-SCCE--EE-TTEEECTTTC--------BCSSSCCBCTT
T ss_pred CCccccCCCeec-ceeE--EE-CCccccHHhc--------CcccCCCccCC
Confidence 457999988877 3322 22 5678998885 79999888753
No 221
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.06 E-value=2e+02 Score=18.96 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 025788 20 QLKLYQAFIFSIPIL 34 (248)
Q Consensus 20 ~~~~~~~i~~~i~il 34 (248)
.+.+-.+++.++.++
T Consensus 15 tLRiGGLifA~vLfi 29 (72)
T 2jo1_A 15 SLQIGGLVIAGILFI 29 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHH
Confidence 344444444444333
Done!