Query 025789
Match_columns 248
No_of_seqs 160 out of 1181
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5E-47 1.1E-51 327.6 23.2 212 9-223 97-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.8E-46 3.8E-51 319.4 23.1 223 8-232 105-335 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.8E-45 6E-50 306.5 19.4 190 2-225 73-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 7.7E-44 1.7E-48 309.3 22.0 211 9-221 91-317 (317)
5 PRK10625 tas putative aldo-ket 100.0 1.7E-43 3.6E-48 310.6 23.2 213 10-222 104-339 (346)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 5.1E-43 1.1E-47 307.3 23.3 214 9-223 109-334 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 4E-42 8.6E-47 294.0 19.9 207 4-221 72-282 (283)
8 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.2E-40 2.5E-45 282.7 21.6 181 9-223 68-253 (267)
9 KOG1577 Aldo/keto reductase fa 100.0 2.5E-40 5.3E-45 277.0 20.0 191 5-225 80-288 (300)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.2E-39 2.5E-44 279.0 22.2 195 9-220 88-285 (285)
11 PLN02587 L-galactose dehydroge 100.0 2.1E-39 4.6E-44 281.1 21.2 200 9-223 90-301 (314)
12 PRK14863 bifunctional regulato 100.0 8.7E-40 1.9E-44 280.3 18.2 195 10-219 82-279 (292)
13 PRK10376 putative oxidoreducta 100.0 4.8E-39 1E-43 275.9 21.4 186 7-223 99-289 (290)
14 COG4989 Predicted oxidoreducta 100.0 3.8E-38 8.1E-43 254.1 16.9 192 8-222 97-293 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.2E-37 2.6E-42 265.2 20.5 182 11-224 80-264 (275)
16 KOG1576 Predicted oxidoreducta 100.0 3.1E-31 6.7E-36 215.8 16.7 198 8-220 114-319 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.4E-31 5.2E-36 225.6 15.3 185 9-222 88-285 (391)
18 KOG3023 Glutamate-cysteine lig 98.2 4.7E-06 1E-10 67.9 6.2 71 46-117 155-227 (285)
19 cd00739 DHPS DHPS subgroup of 94.2 1.3 2.7E-05 37.5 12.1 109 1-118 14-128 (257)
20 PF07021 MetW: Methionine bios 91.8 1.4 3.1E-05 35.4 8.3 115 7-123 40-172 (193)
21 TIGR01496 DHPS dihydropteroate 90.1 11 0.00023 31.9 13.4 106 1-117 13-125 (257)
22 cd03174 DRE_TIM_metallolyase D 88.3 3.5 7.7E-05 34.4 8.5 108 8-117 13-135 (265)
23 cd00423 Pterin_binding Pterin 87.8 15 0.00034 30.8 12.1 104 11-120 21-130 (258)
24 PRK07535 methyltetrahydrofolat 85.0 22 0.00049 30.0 12.1 133 12-174 23-157 (261)
25 PRK10558 alpha-dehydro-beta-de 84.9 9.3 0.0002 32.2 9.2 103 53-207 10-115 (256)
26 PRK13753 dihydropteroate synth 84.2 26 0.00056 30.0 13.2 109 1-120 15-129 (279)
27 PRK13958 N-(5'-phosphoribosyl) 83.9 3.5 7.6E-05 33.6 6.0 68 23-92 16-84 (207)
28 PRK10128 2-keto-3-deoxy-L-rham 81.2 18 0.00039 30.8 9.5 103 53-207 9-114 (267)
29 COG1140 NarY Nitrate reductase 81.2 0.95 2.1E-05 39.9 1.8 54 59-112 263-317 (513)
30 cd07943 DRE_TIM_HOA 4-hydroxy- 81.1 14 0.0003 31.2 8.9 108 7-116 15-131 (263)
31 TIGR03239 GarL 2-dehydro-3-deo 79.4 18 0.00039 30.4 8.9 66 54-120 4-72 (249)
32 cd03319 L-Ala-DL-Glu_epimerase 79.3 13 0.00028 32.1 8.3 74 49-122 216-291 (316)
33 cd03315 MLE_like Muconate lact 78.8 14 0.0003 31.1 8.2 74 50-123 169-244 (265)
34 TIGR00190 thiC thiamine biosyn 78.6 48 0.001 29.9 11.4 92 8-123 134-225 (423)
35 PRK01222 N-(5'-phosphoribosyl) 78.4 6.1 0.00013 32.3 5.7 67 24-92 19-86 (210)
36 COG0135 TrpF Phosphoribosylant 78.2 14 0.0003 30.2 7.6 82 24-114 18-102 (208)
37 cd00308 enolase_like Enolase-s 77.4 17 0.00038 29.7 8.2 87 32-122 120-208 (229)
38 cd03314 MAL Methylaspartate am 76.7 42 0.00092 30.0 10.8 86 34-119 229-321 (369)
39 PRK04452 acetyl-CoA decarbonyl 75.7 19 0.00041 31.5 8.1 93 24-119 85-184 (319)
40 PRK09613 thiH thiamine biosynt 75.5 53 0.0011 30.4 11.4 109 9-119 113-241 (469)
41 cd03313 enolase Enolase: Enola 73.9 42 0.0009 30.4 10.3 106 1-115 245-361 (408)
42 PRK13352 thiamine biosynthesis 73.6 71 0.0015 28.9 11.5 93 7-123 136-228 (431)
43 cd00740 MeTr MeTr subgroup of 72.7 56 0.0012 27.4 12.7 105 11-122 23-131 (252)
44 COG1121 ZnuC ABC-type Mn/Zn tr 72.7 29 0.00062 29.3 8.3 71 7-80 108-207 (254)
45 cd07944 DRE_TIM_HOA_like 4-hyd 72.4 39 0.00085 28.6 9.3 106 7-115 13-127 (266)
46 COG2069 CdhD CO dehydrogenase/ 71.7 51 0.0011 28.5 9.4 95 22-121 158-262 (403)
47 cd03323 D-glucarate_dehydratas 69.8 27 0.00058 31.4 8.1 72 49-120 249-322 (395)
48 PRK00077 eno enolase; Provisio 69.8 65 0.0014 29.3 10.6 105 2-115 249-361 (425)
49 TIGR02311 HpaI 2,4-dihydroxyhe 69.5 48 0.001 27.8 9.0 103 53-207 3-108 (249)
50 cd03322 rpsA The starvation se 69.0 44 0.00094 29.6 9.2 84 32-119 189-274 (361)
51 PRK05414 urocanate hydratase; 68.6 18 0.00039 33.5 6.6 53 22-81 202-254 (556)
52 TIGR01502 B_methylAsp_ase meth 68.3 29 0.00064 31.4 7.9 72 48-119 279-357 (408)
53 TIGR01228 hutU urocanate hydra 68.3 18 0.00039 33.4 6.5 53 22-81 193-245 (545)
54 TIGR03217 4OH_2_O_val_ald 4-hy 67.7 71 0.0015 28.1 10.1 106 7-115 17-132 (333)
55 PRK11613 folP dihydropteroate 66.6 65 0.0014 27.6 9.3 107 1-117 28-140 (282)
56 cd03316 MR_like Mandelate race 66.4 38 0.00083 29.7 8.3 70 49-118 228-299 (357)
57 PRK08195 4-hyroxy-2-oxovalerat 64.8 74 0.0016 28.0 9.6 106 7-116 18-134 (337)
58 PLN02746 hydroxymethylglutaryl 64.3 79 0.0017 28.0 9.7 101 9-115 63-180 (347)
59 cd03318 MLE Muconate Lactonizi 63.7 39 0.00084 29.9 7.8 74 49-122 227-302 (365)
60 TIGR00035 asp_race aspartate r 62.9 36 0.00078 28.0 7.0 68 6-74 9-88 (229)
61 PRK14461 ribosomal RNA large s 62.3 88 0.0019 28.0 9.6 89 35-123 232-354 (371)
62 TIGR01928 menC_lowGC/arch o-su 62.1 26 0.00057 30.5 6.3 87 33-123 199-287 (324)
63 PLN02363 phosphoribosylanthran 61.7 27 0.00059 29.5 6.1 68 24-92 63-131 (256)
64 PF01175 Urocanase: Urocanase; 61.6 25 0.00054 32.6 6.1 53 22-81 192-244 (546)
65 PLN00191 enolase 61.5 93 0.002 28.7 9.9 97 11-116 295-394 (457)
66 TIGR03822 AblA_like_2 lysine-2 61.5 1.1E+02 0.0024 26.6 12.5 110 11-123 119-240 (321)
67 COG2949 SanA Uncharacterized m 60.8 84 0.0018 25.8 8.3 97 16-118 78-181 (235)
68 PRK05692 hydroxymethylglutaryl 60.8 39 0.00085 29.0 7.0 105 8-115 20-138 (287)
69 PF00682 HMGL-like: HMGL-like 60.5 44 0.00096 27.4 7.2 99 9-113 9-124 (237)
70 PF13378 MR_MLE_C: Enolase C-t 60.4 9 0.0002 27.4 2.7 54 68-122 3-57 (111)
71 PRK13803 bifunctional phosphor 60.1 50 0.0011 31.6 8.3 70 24-93 19-89 (610)
72 PRK09856 fructoselysine 3-epim 59.5 1E+02 0.0022 25.7 11.5 52 100-170 93-144 (275)
73 TIGR00676 fadh2 5,10-methylene 58.8 1.1E+02 0.0024 25.9 11.4 98 10-113 69-186 (272)
74 TIGR00381 cdhD CO dehydrogenas 58.8 1.4E+02 0.003 26.9 10.5 105 14-123 128-253 (389)
75 PRK15072 bifunctional D-altron 58.5 1E+02 0.0022 27.8 9.6 71 49-119 245-317 (404)
76 PRK02901 O-succinylbenzoate sy 58.3 92 0.002 27.3 9.0 72 50-123 173-245 (327)
77 PRK15456 universal stress prot 56.4 75 0.0016 23.4 7.3 35 88-122 83-117 (142)
78 TIGR02026 BchE magnesium-proto 56.2 1.2E+02 0.0025 28.2 9.9 102 11-116 222-342 (497)
79 cd03327 MR_like_2 Mandelate ra 55.8 60 0.0013 28.5 7.5 69 49-117 210-280 (341)
80 PRK09427 bifunctional indole-3 54.9 37 0.00079 31.3 6.2 66 24-93 273-339 (454)
81 cd03325 D-galactonate_dehydrat 54.8 1.1E+02 0.0024 26.9 9.1 69 49-117 215-285 (352)
82 TIGR01927 menC_gamma/gm+ o-suc 54.7 99 0.0022 26.7 8.6 73 51-123 196-270 (307)
83 PRK06424 transcription factor; 54.2 42 0.00092 25.7 5.5 81 100-181 23-110 (144)
84 PHA02128 hypothetical protein 54.2 33 0.00072 24.7 4.5 70 47-116 60-150 (151)
85 PRK14017 galactonate dehydrata 53.9 1.1E+02 0.0023 27.3 8.9 70 50-119 217-288 (382)
86 COG2089 SpsE Sialic acid synth 52.9 25 0.00054 30.8 4.4 22 100-122 93-114 (347)
87 PF14871 GHL6: Hypothetical gl 52.5 25 0.00054 26.5 4.0 24 97-120 44-67 (132)
88 TIGR02534 mucon_cyclo muconate 52.5 41 0.00089 29.8 6.0 74 49-122 226-301 (368)
89 PRK10200 putative racemase; Pr 50.7 73 0.0016 26.3 6.9 69 5-74 8-88 (230)
90 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.7 93 0.002 26.4 7.7 103 8-115 15-136 (275)
91 PRK09490 metH B12-dependent me 50.7 3.3E+02 0.007 28.7 13.8 93 25-122 394-492 (1229)
92 TIGR02660 nifV_homocitr homoci 50.6 1.8E+02 0.0039 25.8 10.0 99 8-114 17-130 (365)
93 KOG0059 Lipid exporter ABCA1 a 50.4 90 0.002 31.4 8.6 71 11-83 670-769 (885)
94 PF09989 DUF2229: CoA enzyme a 50.3 58 0.0013 26.8 6.2 27 90-116 192-218 (221)
95 cd07948 DRE_TIM_HCS Saccharomy 50.2 1.5E+02 0.0032 25.1 8.8 101 8-116 16-131 (262)
96 PRK14462 ribosomal RNA large s 49.5 1.9E+02 0.0041 25.7 9.8 87 37-123 226-340 (356)
97 COG2185 Sbm Methylmalonyl-CoA 49.5 64 0.0014 24.7 5.7 59 62-124 17-77 (143)
98 TIGR01212 radical SAM protein, 49.5 1.3E+02 0.0029 25.8 8.6 17 100-116 166-182 (302)
99 PTZ00081 enolase; Provisional 49.3 2.1E+02 0.0046 26.2 12.7 96 11-115 281-381 (439)
100 TIGR01060 eno phosphopyruvate 49.1 2.1E+02 0.0045 26.1 13.1 97 12-117 263-365 (425)
101 TIGR00048 radical SAM enzyme, 49.0 1.2E+02 0.0026 26.9 8.3 89 35-123 219-335 (355)
102 cd03317 NAAAR N-acylamino acid 48.5 68 0.0015 28.2 6.8 87 32-122 203-291 (354)
103 COG4130 Predicted sugar epimer 48.2 1.2E+02 0.0026 25.1 7.3 80 71-169 50-136 (272)
104 COG4555 NatA ABC-type Na+ tran 47.3 1.1E+02 0.0024 25.3 7.0 71 9-81 103-202 (245)
105 PF11242 DUF2774: Protein of u 47.2 30 0.00066 22.3 3.1 23 159-181 15-37 (63)
106 TIGR03247 glucar-dehydr glucar 47.1 96 0.0021 28.4 7.6 70 50-119 268-338 (441)
107 PLN02489 homocysteine S-methyl 47.0 2E+02 0.0044 25.3 13.7 105 7-116 156-273 (335)
108 smart00642 Aamy Alpha-amylase 46.8 34 0.00075 26.7 4.1 22 100-121 73-94 (166)
109 PF14502 HTH_41: Helix-turn-he 46.7 19 0.00042 22.0 2.1 29 158-186 7-37 (48)
110 PF03102 NeuB: NeuB family; I 46.7 17 0.00037 30.4 2.5 31 175-205 105-135 (241)
111 PRK15005 universal stress prot 46.7 85 0.0018 23.0 6.2 28 93-120 90-117 (144)
112 COG1151 6Fe-6S prismane cluste 46.2 1.2E+02 0.0027 28.6 8.0 51 14-67 360-413 (576)
113 TIGR02082 metH 5-methyltetrahy 45.8 3.8E+02 0.0082 28.1 14.0 106 12-122 366-476 (1178)
114 PF00356 LacI: Bacterial regul 45.3 29 0.00063 20.9 2.7 42 160-207 2-43 (46)
115 PF11020 DUF2610: Domain of un 45.1 60 0.0013 22.1 4.4 29 151-179 48-76 (82)
116 PRK00730 rnpA ribonuclease P; 44.5 1.1E+02 0.0023 23.3 6.3 53 7-59 56-110 (138)
117 PRK14459 ribosomal RNA large s 43.7 1.7E+02 0.0037 26.2 8.5 90 34-123 241-361 (373)
118 PRK01045 ispH 4-hydroxy-3-meth 43.6 1.4E+02 0.0031 25.8 7.7 108 60-202 156-275 (298)
119 PF07994 NAD_binding_5: Myo-in 43.3 2.2E+02 0.0047 24.7 8.8 143 13-198 131-283 (295)
120 COG2987 HutU Urocanate hydrata 42.6 59 0.0013 29.8 5.2 57 24-87 204-261 (561)
121 PRK02714 O-succinylbenzoate sy 42.5 1.8E+02 0.0038 25.3 8.3 86 32-123 192-278 (320)
122 PF13407 Peripla_BP_4: Peripla 42.4 99 0.0021 25.1 6.6 52 14-71 14-65 (257)
123 TIGR00735 hisF imidazoleglycer 42.1 1.2E+02 0.0025 25.4 6.9 91 20-113 160-253 (254)
124 PF00697 PRAI: N-(5'phosphorib 41.7 25 0.00055 28.2 2.7 68 22-93 13-81 (197)
125 TIGR02026 BchE magnesium-proto 41.1 3E+02 0.0064 25.6 10.0 73 45-119 223-306 (497)
126 cd03320 OSBS o-Succinylbenzoat 40.5 1.3E+02 0.0028 25.1 7.0 73 49-122 166-239 (263)
127 PRK14470 ribosomal RNA large s 39.5 1.8E+02 0.004 25.6 7.9 89 35-123 208-324 (336)
128 PRK12360 4-hydroxy-3-methylbut 39.3 1.9E+02 0.0042 24.8 7.8 43 159-202 226-274 (281)
129 PF07476 MAAL_C: Methylasparta 39.3 84 0.0018 26.1 5.3 79 35-115 107-194 (248)
130 PRK14465 ribosomal RNA large s 38.9 2.6E+02 0.0056 24.7 8.8 89 35-123 216-331 (342)
131 PRK13352 thiamine biosynthesis 38.6 1.2E+02 0.0027 27.5 6.6 119 49-202 123-246 (431)
132 COG2102 Predicted ATPases of P 38.5 38 0.00081 27.9 3.2 96 46-172 75-177 (223)
133 COG0282 ackA Acetate kinase [E 37.9 3E+02 0.0066 24.8 8.9 120 54-204 164-291 (396)
134 cd04742 NPD_FabD 2-Nitropropan 37.8 1.2E+02 0.0025 27.7 6.5 88 24-118 7-103 (418)
135 PRK11267 biopolymer transport 37.6 96 0.0021 23.4 5.2 54 11-69 81-134 (141)
136 TIGR03569 NeuB_NnaB N-acetylne 37.6 44 0.00096 29.3 3.7 20 100-120 79-98 (329)
137 PRK12331 oxaloacetate decarbox 37.6 2.6E+02 0.0056 25.8 8.8 103 8-114 20-140 (448)
138 COG0820 Predicted Fe-S-cluster 37.1 2.3E+02 0.0049 25.2 8.0 110 11-123 193-332 (349)
139 PRK14464 ribosomal RNA large s 37.0 2.8E+02 0.0062 24.5 8.7 81 43-123 222-319 (344)
140 cd03329 MR_like_4 Mandelate ra 36.7 2.1E+02 0.0045 25.3 8.0 68 50-117 229-299 (368)
141 COG1104 NifS Cysteine sulfinat 36.3 98 0.0021 27.8 5.7 107 14-122 44-183 (386)
142 TIGR00677 fadh2_euk methylenet 36.2 2.7E+02 0.0059 23.7 11.6 98 10-113 70-190 (281)
143 PRK11024 colicin uptake protei 35.9 96 0.0021 23.3 5.0 53 11-68 85-137 (141)
144 PF01876 RNase_P_p30: RNase P 35.6 1E+02 0.0022 23.4 5.1 60 61-120 24-85 (150)
145 TIGR01182 eda Entner-Doudoroff 35.5 2.3E+02 0.005 23.0 7.4 88 12-115 18-106 (204)
146 TIGR00216 ispH_lytB (E)-4-hydr 35.4 1.7E+02 0.0037 25.1 6.9 44 158-202 224-273 (280)
147 PRK08392 hypothetical protein; 35.4 2.4E+02 0.0052 22.8 7.6 38 29-67 86-123 (215)
148 PF00072 Response_reg: Respons 35.3 1E+02 0.0023 21.0 4.9 66 23-91 35-102 (112)
149 TIGR01290 nifB nitrogenase cof 35.3 3.6E+02 0.0077 24.8 12.6 113 8-123 57-200 (442)
150 PRK11194 ribosomal RNA large s 35.2 3.3E+02 0.0072 24.4 9.7 87 37-123 222-339 (372)
151 COG0626 MetC Cystathionine bet 35.0 1.8E+02 0.004 26.2 7.3 82 45-126 111-195 (396)
152 COG0773 MurC UDP-N-acetylmuram 34.9 25 0.00053 32.3 1.8 30 162-191 111-141 (459)
153 PRK14456 ribosomal RNA large s 34.7 2.5E+02 0.0054 25.1 8.1 79 44-122 259-354 (368)
154 PF10171 DUF2366: Uncharacteri 34.4 89 0.0019 24.7 4.6 50 18-70 67-116 (173)
155 cd07939 DRE_TIM_NifV Streptomy 33.8 2.8E+02 0.0061 23.1 10.3 99 8-114 14-127 (259)
156 PRK15108 biotin synthase; Prov 33.6 3.3E+02 0.0073 23.9 10.8 108 11-122 76-196 (345)
157 PRK14455 ribosomal RNA large s 33.5 3.1E+02 0.0067 24.3 8.5 89 35-123 223-339 (356)
158 PF05368 NmrA: NmrA-like famil 33.2 1.6E+02 0.0035 23.7 6.3 85 31-123 22-107 (233)
159 TIGR03849 arch_ComA phosphosul 32.8 1.2E+02 0.0027 25.3 5.4 96 18-115 12-118 (237)
160 PRK06015 keto-hydroxyglutarate 32.7 1.4E+02 0.0031 24.2 5.7 88 12-115 14-102 (201)
161 PF00809 Pterin_bind: Pterin b 32.6 2.4E+02 0.0053 22.7 7.2 93 23-119 27-125 (210)
162 PF13167 GTP-bdg_N: GTP-bindin 32.6 21 0.00045 25.3 0.8 67 154-222 7-80 (95)
163 PF01402 RHH_1: Ribbon-helix-h 32.5 95 0.0021 17.3 4.2 21 156-176 10-30 (39)
164 PRK08776 cystathionine gamma-s 32.3 2.3E+02 0.0049 25.6 7.6 76 47-122 110-187 (405)
165 TIGR03070 couple_hipB transcri 32.3 47 0.001 20.0 2.3 20 159-178 6-25 (58)
166 PRK08609 hypothetical protein; 32.2 4.4E+02 0.0096 25.1 9.8 16 158-173 537-552 (570)
167 PRK14457 ribosomal RNA large s 31.6 3.7E+02 0.008 23.8 10.8 102 22-123 197-332 (345)
168 cd08583 PI-PLCc_GDPD_SF_unchar 31.5 2.9E+02 0.0062 22.5 8.7 18 100-117 195-212 (237)
169 PRK09856 fructoselysine 3-epim 31.5 3E+02 0.0066 22.8 8.2 51 72-122 15-72 (275)
170 cd00248 Mth938-like Mth938-lik 31.1 1.4E+02 0.003 21.5 4.9 52 68-119 37-88 (109)
171 PF12162 STAT1_TAZ2bind: STAT1 30.9 38 0.00082 17.2 1.3 15 207-221 8-22 (23)
172 PLN02540 methylenetetrahydrofo 30.9 4.8E+02 0.01 24.9 11.7 182 9-207 68-285 (565)
173 PF04413 Glycos_transf_N: 3-De 30.8 37 0.0008 27.1 2.0 91 23-115 5-123 (186)
174 TIGR02814 pfaD_fam PfaD family 30.6 1.8E+02 0.0039 26.7 6.6 67 51-118 34-108 (444)
175 cd00668 Ile_Leu_Val_MetRS_core 30.5 81 0.0018 27.2 4.3 48 14-64 82-131 (312)
176 TIGR01428 HAD_type_II 2-haloal 30.4 99 0.0021 24.3 4.5 64 16-81 61-128 (198)
177 PLN02428 lipoic acid synthase 30.3 3.9E+02 0.0085 23.7 8.7 77 44-121 228-325 (349)
178 PF01890 CbiG_C: Cobalamin syn 30.3 1.4E+02 0.003 21.9 4.9 66 7-79 8-73 (121)
179 COG1523 PulA Type II secretory 30.2 53 0.0011 32.0 3.2 81 21-119 206-287 (697)
180 PRK14040 oxaloacetate decarbox 30.0 3.7E+02 0.0079 25.8 8.8 102 8-113 21-140 (593)
181 PRK14463 ribosomal RNA large s 30.0 2.3E+02 0.0051 25.0 7.1 71 8-80 128-203 (349)
182 PRK13210 putative L-xylulose 5 29.8 3.3E+02 0.0071 22.6 11.8 51 100-169 97-147 (284)
183 cd03321 mandelate_racemase Man 29.7 1.3E+02 0.0027 26.5 5.4 67 50-116 226-294 (355)
184 PRK14463 ribosomal RNA large s 29.7 3.3E+02 0.0072 24.1 8.0 89 35-123 211-327 (349)
185 KOG1720 Protein tyrosine phosp 29.5 1.4E+02 0.0031 24.5 5.1 27 163-192 169-195 (225)
186 PF10668 Phage_terminase: Phag 29.4 1.3E+02 0.0029 19.3 4.0 17 159-175 24-40 (60)
187 PRK00164 moaA molybdenum cofac 29.2 3.7E+02 0.0081 23.1 8.5 71 45-115 142-228 (331)
188 PRK10997 yieM hypothetical pro 29.2 1.8E+02 0.0039 27.1 6.4 65 15-79 398-467 (487)
189 TIGR02090 LEU1_arch isopropylm 28.9 4.1E+02 0.009 23.5 10.1 100 7-114 15-129 (363)
190 COG2159 Predicted metal-depend 28.7 3.4E+02 0.0073 23.3 7.7 97 24-122 55-169 (293)
191 PRK02866 cyanate hydratase; Va 28.6 2E+02 0.0043 22.1 5.6 50 160-220 21-70 (147)
192 PF07287 DUF1446: Protein of u 28.4 1.8E+02 0.0039 26.0 6.0 87 49-170 11-100 (362)
193 PRK12558 glutamyl-tRNA synthet 28.4 1.4E+02 0.003 27.5 5.5 54 9-68 46-99 (445)
194 PRK14466 ribosomal RNA large s 28.2 4.2E+02 0.0092 23.5 8.5 90 34-123 210-327 (345)
195 PRK08227 autoinducer 2 aldolas 28.2 2.6E+02 0.0057 23.7 6.8 68 100-194 130-202 (264)
196 PRK09536 btuD corrinoid ABC tr 28.2 1.6E+02 0.0034 26.7 5.8 74 49-122 279-352 (402)
197 PRK10834 vancomycin high tempe 28.2 3.3E+02 0.0072 22.8 7.2 18 100-117 151-168 (239)
198 COG0761 lytB 4-Hydroxy-3-methy 28.1 2.7E+02 0.0058 24.0 6.7 69 99-202 203-277 (294)
199 PRK07027 cobalamin biosynthesi 27.9 1.4E+02 0.003 22.1 4.6 65 7-78 10-74 (126)
200 TIGR02127 pyrF_sub2 orotidine 27.8 3.7E+02 0.0081 22.7 10.7 53 12-65 35-91 (261)
201 PF02581 TMP-TENI: Thiamine mo 27.7 3E+02 0.0064 21.5 6.8 57 60-119 93-158 (180)
202 PLN03228 methylthioalkylmalate 27.5 5.2E+02 0.011 24.2 9.1 106 8-120 100-232 (503)
203 PRK14453 chloramphenicol/florf 27.5 4.3E+02 0.0094 23.3 9.4 94 30-123 203-332 (347)
204 PF10007 DUF2250: Uncharacteri 27.4 43 0.00094 23.5 1.6 50 17-69 9-58 (92)
205 PF02679 ComA: (2R)-phospho-3- 26.9 1.3E+02 0.0028 25.2 4.7 98 17-115 24-131 (244)
206 COG1099 Predicted metal-depend 26.9 3.8E+02 0.0082 22.4 7.6 112 34-176 29-162 (254)
207 cd00814 MetRS_core catalytic c 26.7 99 0.0021 26.8 4.2 46 14-62 69-114 (319)
208 cd00405 PRAI Phosphoribosylant 26.5 1.3E+02 0.0029 24.0 4.6 41 31-75 73-113 (203)
209 cd04438 DEP_dishevelled DEP (D 26.4 36 0.00078 23.4 1.1 37 28-65 32-68 (84)
210 COG2055 Malate/L-lactate dehyd 26.2 3.2E+02 0.0069 24.3 7.1 22 9-30 4-25 (349)
211 COG1131 CcmA ABC-type multidru 26.2 2E+02 0.0044 24.6 6.0 49 32-81 155-206 (293)
212 PF01081 Aldolase: KDPG and KH 26.1 1.4E+02 0.0031 24.1 4.6 80 20-115 25-106 (196)
213 PF13467 RHH_4: Ribbon-helix-h 25.8 86 0.0019 20.6 2.7 27 156-182 22-48 (67)
214 COG0159 TrpA Tryptophan syntha 25.7 4E+02 0.0087 22.7 7.4 94 14-111 2-123 (265)
215 cd00818 IleRS_core catalytic c 25.6 1E+02 0.0022 27.0 4.1 46 15-63 88-135 (338)
216 COG2875 CobM Precorrin-4 methy 25.5 4E+02 0.0086 22.4 7.0 85 31-116 75-165 (254)
217 PRK05339 PEP synthetase regula 25.4 1.9E+02 0.0042 24.6 5.4 123 89-220 62-209 (269)
218 PF05913 DUF871: Bacterial pro 25.3 91 0.002 27.8 3.7 120 55-204 106-235 (357)
219 PF03472 Autoind_bind: Autoind 25.3 2.7E+02 0.0058 20.2 7.1 24 12-35 1-24 (149)
220 COG2089 SpsE Sialic acid synth 25.3 2.4E+02 0.0053 24.8 6.1 60 12-75 158-219 (347)
221 cd04449 DEP_DEPDC5-like DEP (D 25.2 29 0.00064 23.7 0.5 23 44-66 47-69 (83)
222 TIGR02764 spore_ybaN_pdaB poly 25.2 1.9E+02 0.0041 22.6 5.3 29 33-61 153-182 (191)
223 cd07938 DRE_TIM_HMGL 3-hydroxy 25.2 3.7E+02 0.008 22.8 7.3 101 9-115 15-132 (274)
224 TIGR03471 HpnJ hopanoid biosyn 25.0 92 0.002 28.6 3.8 27 51-77 288-315 (472)
225 PRK07945 hypothetical protein; 24.9 4.7E+02 0.01 22.9 9.9 36 29-66 191-226 (335)
226 PF05499 DMAP1: DNA methyltran 24.9 1.9E+02 0.0042 22.9 5.0 36 14-59 104-139 (176)
227 cd03328 MR_like_3 Mandelate ra 24.9 2.2E+02 0.0048 25.0 6.1 69 49-117 221-293 (352)
228 PRK11893 methionyl-tRNA synthe 24.9 1.1E+02 0.0024 28.2 4.4 47 14-63 70-116 (511)
229 smart00052 EAL Putative diguan 24.9 3.6E+02 0.0077 21.4 7.4 68 46-116 132-209 (241)
230 PF01053 Cys_Met_Meta_PP: Cys/ 24.9 2.4E+02 0.0052 25.3 6.4 81 46-126 104-187 (386)
231 cd00405 PRAI Phosphoribosylant 24.8 2.1E+02 0.0045 22.8 5.5 67 24-92 15-82 (203)
232 TIGR03586 PseI pseudaminic aci 24.7 1E+02 0.0023 27.0 3.9 20 100-120 80-99 (327)
233 PRK07531 bifunctional 3-hydrox 24.5 5.7E+02 0.012 23.7 10.0 122 31-177 80-216 (495)
234 PF13518 HTH_28: Helix-turn-he 24.3 1E+02 0.0022 18.1 2.8 22 159-181 14-35 (52)
235 PLN02444 HMP-P synthase 24.3 6.4E+02 0.014 24.1 10.8 90 8-123 294-383 (642)
236 cd06543 GH18_PF-ChiA-like PF-C 24.2 1.8E+02 0.0038 25.1 5.2 24 100-123 243-266 (294)
237 KOG2534 DNA polymerase IV (fam 24.1 1.1E+02 0.0023 26.9 3.7 114 32-176 190-320 (353)
238 PLN02880 tyrosine decarboxylas 24.1 3.7E+02 0.008 25.0 7.6 52 16-67 190-244 (490)
239 TIGR03838 queuosine_YadB gluta 24.0 2.8E+02 0.0061 23.6 6.3 61 11-78 46-106 (272)
240 TIGR03822 AblA_like_2 lysine-2 23.5 2.8E+02 0.006 24.1 6.3 100 11-113 150-261 (321)
241 PRK15440 L-rhamnonate dehydrat 23.5 2.5E+02 0.0054 25.3 6.2 68 49-116 247-318 (394)
242 COG1751 Uncharacterized conser 23.5 3.6E+02 0.0078 21.0 6.3 87 35-122 2-95 (186)
243 cd00671 ArgRS_core catalytic c 23.3 1.8E+02 0.0039 23.4 4.9 45 14-63 68-112 (212)
244 PRK06294 coproporphyrinogen II 23.1 1.8E+02 0.004 25.8 5.3 29 9-38 165-193 (370)
245 PF06506 PrpR_N: Propionate ca 23.1 42 0.0009 26.3 1.0 97 17-118 20-133 (176)
246 PF01680 SOR_SNZ: SOR/SNZ fami 23.1 43 0.00093 26.7 1.1 15 22-36 87-101 (208)
247 cd00019 AP2Ec AP endonuclease 23.1 4.4E+02 0.0096 21.9 8.0 18 101-118 49-67 (279)
248 PF02401 LYTB: LytB protein; 23.0 2.1E+02 0.0047 24.5 5.4 108 60-202 155-274 (281)
249 cd08556 GDPD Glycerophosphodie 22.9 3.5E+02 0.0076 20.6 7.4 19 100-118 150-168 (189)
250 TIGR00262 trpA tryptophan synt 22.9 4.6E+02 0.0099 22.0 9.0 72 46-119 71-150 (256)
251 PF02801 Ketoacyl-synt_C: Beta 22.8 2E+02 0.0042 20.7 4.6 53 8-60 19-73 (119)
252 cd01075 NAD_bind_Leu_Phe_Val_D 22.7 2.8E+02 0.0061 22.2 5.8 72 101-181 123-196 (200)
253 PLN02775 Probable dihydrodipic 22.6 3.4E+02 0.0073 23.4 6.5 60 18-81 66-125 (286)
254 COG2022 ThiG Uncharacterized e 22.5 4.1E+02 0.009 22.3 6.6 53 10-62 79-132 (262)
255 TIGR03471 HpnJ hopanoid biosyn 22.5 6E+02 0.013 23.3 10.4 105 10-119 226-345 (472)
256 PRK00087 4-hydroxy-3-methylbut 22.2 3.6E+02 0.0079 26.1 7.4 43 159-202 223-271 (647)
257 PF00289 CPSase_L_chain: Carba 22.1 3.1E+02 0.0066 19.7 7.8 89 15-116 12-105 (110)
258 COG0352 ThiE Thiamine monophos 22.1 4.4E+02 0.0095 21.5 7.1 57 60-119 102-167 (211)
259 PRK14834 undecaprenyl pyrophos 22.0 2.8E+02 0.0061 23.3 5.8 70 8-78 39-120 (249)
260 PRK05968 hypothetical protein; 21.9 4.6E+02 0.0099 23.3 7.6 52 71-122 137-189 (389)
261 COG2352 Ppc Phosphoenolpyruvat 21.8 8.4E+02 0.018 24.6 11.6 101 17-120 471-606 (910)
262 COG4034 Uncharacterized protei 21.8 2.4E+02 0.0051 24.2 5.2 61 20-81 162-225 (328)
263 PRK08334 translation initiatio 21.5 1.4E+02 0.0031 26.5 4.1 31 166-196 217-250 (356)
264 PF13744 HTH_37: Helix-turn-he 21.4 31 0.00068 23.2 0.0 53 156-208 19-74 (80)
265 PF01964 ThiC: ThiC family; I 21.2 1.4E+02 0.003 27.0 4.0 93 7-119 132-224 (420)
266 TIGR01108 oadA oxaloacetate de 21.2 92 0.002 29.7 3.0 105 9-116 16-137 (582)
267 PRK09462 fur ferric uptake reg 21.2 1.2E+02 0.0027 22.8 3.3 51 19-69 21-75 (148)
268 PRK11858 aksA trans-homoaconit 21.2 5.9E+02 0.013 22.7 10.1 101 8-116 20-135 (378)
269 TIGR02804 ExbD_2 TonB system t 21.1 3.2E+02 0.0068 19.8 5.4 32 36-68 87-118 (121)
270 PRK08247 cystathionine gamma-s 21.1 4.7E+02 0.01 23.0 7.4 62 62-123 116-179 (366)
271 PRK14460 ribosomal RNA large s 20.9 5.9E+02 0.013 22.5 9.7 99 24-123 208-334 (354)
272 COG4900 Predicted metallopepti 20.8 98 0.0021 22.6 2.4 24 14-37 7-30 (133)
273 PRK09282 pyruvate carboxylase 20.8 4.7E+02 0.01 25.1 7.7 101 9-115 21-141 (592)
274 cd02930 DCR_FMN 2,4-dienoyl-Co 20.5 3.4E+02 0.0073 23.9 6.4 23 44-67 221-243 (353)
275 PRK06552 keto-hydroxyglutarate 20.4 3.2E+02 0.007 22.2 5.8 80 20-115 30-114 (213)
276 PF15513 DUF4651: Domain of un 20.3 2.3E+02 0.0049 18.4 3.8 29 12-42 3-31 (62)
277 TIGR00673 cynS cyanate hydrata 20.3 3.5E+02 0.0077 20.9 5.5 50 159-219 23-72 (150)
278 PRK00260 cysS cysteinyl-tRNA s 20.2 2.3E+02 0.0051 26.1 5.4 46 14-63 91-136 (463)
279 cd04444 DEP_PLEK2 DEP (Disheve 20.2 35 0.00076 24.8 0.0 30 44-73 48-77 (109)
280 PRK13796 GTPase YqeH; Provisio 20.1 5.7E+02 0.012 22.6 7.8 62 12-74 114-175 (365)
281 TIGR01660 narH nitrate reducta 20.1 61 0.0013 29.9 1.5 53 60-112 264-317 (492)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5e-47 Score=327.64 Aligned_cols=212 Identities=44% Similarity=0.695 Sum_probs=194.6
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-CCccee
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAV 87 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 87 (248)
.++++++|+++++.||+|||||||||||+|||+...+.++++++|.+++++||||+||+||++.+++.++... .+++++
T Consensus 97 ~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~ 176 (316)
T COG0667 97 FGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSL 176 (316)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceee
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998 599999
Q ss_pred ccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhc-CCCCCchhhHHHHHHHHHHHHHHHH
Q 025789 88 QMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAM-HPRFSGENLEKNKLLYTRLETLAAK 166 (248)
Q Consensus 88 q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ia~~ 166 (248)
|.+||++++..+.+++++|+++||++++|+||++|+|+|++... ..+.+.. .+.|.....+........+.++|++
T Consensus 177 Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 253 (316)
T COG0667 177 QPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQRELTERGLAILRALEELAKE 253 (316)
T ss_pred cccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 99999999877677999999999999999999999999995543 2223322 3566667778888999999999999
Q ss_pred hCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCC
Q 025789 167 YGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 223 (248)
Q Consensus 167 ~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~ 223 (248)
+|+|++|+||+|++++|.|+++|+|+++++||++|+++++..|+++++++|++....
T Consensus 254 ~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 254 LGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.8e-46 Score=319.36 Aligned_cols=223 Identities=48% Similarity=0.709 Sum_probs=198.7
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCC--cc
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHP--IT 85 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~--~~ 85 (248)
....++..+..+++.|++||||+||||||+||+|+..+.++++++|.+++++|||+|||+|+++++++.++....+ +.
T Consensus 105 ~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~ 184 (336)
T KOG1575|consen 105 PRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIV 184 (336)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCce
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999988866 99
Q ss_pred eeccccCCccccch-hchHHHHHHcCCcEEeeccccccccccccc-cCCCCchhhhhc----CCCCCchhhHHHHHHHHH
Q 025789 86 AVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAV-VESLPSESILAM----HPRFSGENLEKNKLLYTR 159 (248)
Q Consensus 86 ~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 159 (248)
++|++||++.|..+ .+++++|++.||++++||||++|+|||++. ..+.+.++.+.. .+.+... ...+..+++
T Consensus 185 s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 262 (336)
T KOG1575|consen 185 AVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEG--DKQKPILEA 262 (336)
T ss_pred EeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchh--hhHHHHHHH
Confidence 99999999999844 669999999999999999999999999944 344555544322 2222222 567788899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCCCCCCCCCCC
Q 025789 160 LETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPVDEVGGHRDY 232 (248)
Q Consensus 160 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~~~~~~~~~~ 232 (248)
+.++|+++|+|++|+||+|+++++.|+++|||+++++||+||++|+.+.||++++.+|+++.+.....+.+|.
T Consensus 263 ~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 263 LSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998877776653
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.8e-45 Score=306.53 Aligned_cols=190 Identities=32% Similarity=0.504 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHh
Q 025789 2 LDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 79 (248)
Q Consensus 2 ~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 79 (248)
+-..-|+.+++++.+.+++++||+|||+||||||+||||.+. ....|+|++|++++++||||+||||||+..+|++++
T Consensus 73 ittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~ 152 (280)
T COG0656 73 ITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELL 152 (280)
T ss_pred EEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHH
Confidence 334467888999999999999999999999999999999763 226899999999999999999999999999999998
Q ss_pred cc--CCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccc-cccccccCCCCchhhhhcCCCCCchhhHHHHHH
Q 025789 80 AV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF-FAGKAVVESLPSESILAMHPRFSGENLEKNKLL 156 (248)
Q Consensus 80 ~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
+. ..+.++|++||++.+. .+++++|+++||.+++||||+.|. +...
T Consensus 153 ~~~~~~p~~NQIe~hp~~~q--~el~~~~~~~gI~v~AysPL~~g~~l~~~----------------------------- 201 (280)
T COG0656 153 SLAKVKPAVNQIEYHPYLRQ--PELLPFCQRHGIAVEAYSPLAKGGKLLDN----------------------------- 201 (280)
T ss_pred HhcCCCCceEEEEeccCCCc--HHHHHHHHHcCCEEEEECCcccccccccC-----------------------------
Confidence 76 5589999999999996 459999999999999999999643 2111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCCCC
Q 025789 157 YTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPVDE 225 (248)
Q Consensus 157 ~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~~~ 225 (248)
+.+..||++||.|++|++|+|+++++. ++||++++++|+.+|++++++.||++||+.|+++.....
T Consensus 202 -~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~ 267 (280)
T COG0656 202 -PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYG 267 (280)
T ss_pred -hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhccccC
Confidence 389999999999999999999999995 999999999999999999999999999999999988653
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7.7e-44 Score=309.29 Aligned_cols=211 Identities=29% Similarity=0.465 Sum_probs=178.5
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc------C
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV------H 82 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~------~ 82 (248)
.+++++.+++++++||+||||||||+|++|||+...+.++++++|++++++||||+||+|||+..+++++... .
T Consensus 91 ~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~ 170 (317)
T TIGR01293 91 RGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLI 170 (317)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCC
Confidence 3578999999999999999999999999999998888999999999999999999999999999888776432 4
Q ss_pred CcceeccccCCccccc-hhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCC---CCC----chhhHHHH
Q 025789 83 PITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHP---RFS----GENLEKNK 154 (248)
Q Consensus 83 ~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~ 154 (248)
+++++|++||++++.. +.+++++|+++||++++|+||++|+|+|++... .+.+. +...+ ++. .+......
T Consensus 171 ~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 248 (317)
T TIGR01293 171 PPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYS-RATLKGYQWLKDKILSEEGRRQQ 248 (317)
T ss_pred CcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcc-cccccccchhhhhhcchhhHHHH
Confidence 7789999999999863 567999999999999999999999999985332 22222 11111 111 11222345
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC--CCCHHHHHHHHhhc
Q 025789 155 LLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL--KLKEEDLKEICKTI 221 (248)
Q Consensus 155 ~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~--~Lt~~~~~~l~~~~ 221 (248)
...+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++++ +||++++++|++++
T Consensus 249 ~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~~ 317 (317)
T TIGR01293 249 ARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSIL 317 (317)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhhC
Confidence 66788999999999999999999999999999999999999999999999987 99999999998763
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.7e-43 Score=310.63 Aligned_cols=213 Identities=31% Similarity=0.404 Sum_probs=178.7
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-----------------CCCHHHHHHHHHHHHHcCcccEEeccCCcH
Q 025789 10 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----------------SVSIEDTMGELKKLVEEGKIKYIGLSEASA 72 (248)
Q Consensus 10 ~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~-----------------~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 72 (248)
+++++.+++++++||+||||||||||++|||+. ..+++++|++|++|+++|||++||+|||+.
T Consensus 104 ~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~ 183 (346)
T PRK10625 104 ALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETA 183 (346)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 578999999999999999999999999999964 246789999999999999999999999999
Q ss_pred HHHHHHhc------cCCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCC
Q 025789 73 DTIRRAHA------VHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFS 146 (248)
Q Consensus 73 ~~l~~~~~------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~ 146 (248)
.+++++.. ...+.++|++||++++..+.+++++|+++||++++|+||++|+|+|+......+.+......+.|.
T Consensus 184 ~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~ 263 (346)
T PRK10625 184 FGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFT 263 (346)
T ss_pred HHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccc
Confidence 88876543 235788999999999876668999999999999999999999999985333222221101111122
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcC
Q 025789 147 GENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIP 222 (248)
Q Consensus 147 ~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~ 222 (248)
....+....+.+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++++||++++++|+++.+
T Consensus 264 ~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 264 RYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred cccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 1112345567789999999999999999999999999999999999999999999999999999999999999875
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.1e-43 Score=307.33 Aligned_cols=214 Identities=28% Similarity=0.512 Sum_probs=179.2
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-----CC
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-----HP 83 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-----~~ 83 (248)
.+.+++.+++++++||+||||||||+|++|||+...+.++++++|++|+++|||++||||||++++++++.+. .+
T Consensus 109 ~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~ 188 (346)
T PRK09912 109 SGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIP 188 (346)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999998888999999999999999999999999999988765432 46
Q ss_pred cceeccccCCccccch-hchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhh----cCCCCCchh-hHHHHHHH
Q 025789 84 ITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILA----MHPRFSGEN-LEKNKLLY 157 (248)
Q Consensus 84 ~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~ 157 (248)
++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .+.+.... ..+.|.+.. .+....+.
T Consensus 189 ~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (346)
T PRK09912 189 LLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMHREGNKVRGLTPKMLTEANLNSL 267 (346)
T ss_pred cEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCccccccccchhhhchhhccHHHHHHH
Confidence 7899999999998654 46999999999999999999999999985322 12111000 001121111 13345667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhccc-CCCCCHHHHHHHHhhcCC
Q 025789 158 TRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSL-ALKLKEEDLKEICKTIPV 223 (248)
Q Consensus 158 ~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~-~~~Lt~~~~~~l~~~~~~ 223 (248)
+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++ .++||++++++|+++.+.
T Consensus 268 ~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 268 RLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 889999999999999999999999999999999999999999999998 489999999999998754
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4e-42 Score=293.98 Aligned_cols=207 Identities=36% Similarity=0.558 Sum_probs=175.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHH--hc
Q 025789 4 GVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRA--HA 80 (248)
Q Consensus 4 ~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~--~~ 80 (248)
.+.+..+++++.+++++++||++|||||||+|+||+|+.... .+++|++|++++++|+||+||||||+++.++++ ..
T Consensus 72 ~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~ 151 (283)
T PF00248_consen 72 DGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIG 151 (283)
T ss_dssp SSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCT
T ss_pred cccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccc
Confidence 455678999999999999999999999999999999999888 899999999999999999999999999999999 56
Q ss_pred cCCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCC-CCchhhhhcCCCCCchhhHHHHHHHHH
Q 025789 81 VHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVES-LPSESILAMHPRFSGENLEKNKLLYTR 159 (248)
Q Consensus 81 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (248)
..+|+++|++||++++....+++++|+++||++++|+||++|+|+++..... .+..... .......+.
T Consensus 152 ~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 220 (283)
T PF00248_consen 152 SIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADA 220 (283)
T ss_dssp SS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhh
Confidence 6889999999999976667899999999999999999999999998743221 1111000 003345569
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhc
Q 025789 160 LETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTI 221 (248)
Q Consensus 160 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~ 221 (248)
+.++++++|+|++|+||+|+++++.+.++|+|+++++|+++|+++++++||++++++|+++.
T Consensus 221 l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 221 LRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 8
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.2e-40 Score=282.75 Aligned_cols=181 Identities=28% Similarity=0.396 Sum_probs=163.7
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc---CC
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS--VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HP 83 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~ 83 (248)
.+.+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++++++||||+||+|||+.++++++++. .+
T Consensus 68 ~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~ 147 (267)
T PRK11172 68 DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAEN 147 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999763 56789999999999999999999999999999888664 36
Q ss_pred cceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHH
Q 025789 84 ITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETL 163 (248)
Q Consensus 84 ~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 163 (248)
++++|++||++++. .+++++|+++||++++|+||++|.+.+. +.+.++
T Consensus 148 ~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------------------------------~~l~~~ 195 (267)
T PRK11172 148 IATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------------------------------PVIARI 195 (267)
T ss_pred CeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC------------------------------HHHHHH
Confidence 89999999999874 6799999999999999999998854311 268899
Q ss_pred HHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCC
Q 025789 164 AAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 223 (248)
Q Consensus 164 a~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~ 223 (248)
|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++||++++++|+++.++
T Consensus 196 a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 196 AAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 999999999999999999985 7999999999999999999999999999999999764
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.5e-40 Score=276.98 Aligned_cols=191 Identities=29% Similarity=0.454 Sum_probs=169.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC----------------CCHHHHHHHHHHHHHcCcccEEecc
Q 025789 5 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----------------VSIEDTMGELKKLVEEGKIKYIGLS 68 (248)
Q Consensus 5 ~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~----------------~~~~~~~~~l~~l~~~G~ir~iGvS 68 (248)
.-|...+.++.++.++++||++||+||+|+|++|||-.. .+..++|++|+++++.|++|+||||
T Consensus 80 Klw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVS 159 (300)
T KOG1577|consen 80 KLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVS 159 (300)
T ss_pred ccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeee
Confidence 356777999999999999999999999999999999543 3467899999999999999999999
Q ss_pred CCcHHHHHHHhcc--CCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCC
Q 025789 69 EASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFS 146 (248)
Q Consensus 69 ~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~ 146 (248)
||+..++++++.. .++.++|+++|++.++ .+++++|+++||.|.|||||+++-- +. .-+
T Consensus 160 NF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~---~ll------------- 220 (300)
T KOG1577|consen 160 NFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS---DLL------------- 220 (300)
T ss_pred cCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc---ccc-------------
Confidence 9999999999886 7789999999998874 6799999999999999999997631 00 000
Q ss_pred chhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCCCC
Q 025789 147 GENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPVDE 225 (248)
Q Consensus 147 ~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~~~ 225 (248)
--+.+.+||+++|.|++|++|||+++++. +|||.++++++++||++++++.||++|++.|++.....+
T Consensus 221 ---------~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 221 ---------EDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred ---------cCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 01389999999999999999999999998 999999999999999999999999999999998877654
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.2e-39 Score=279.02 Aligned_cols=195 Identities=42% Similarity=0.679 Sum_probs=174.4
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCcc
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPIT 85 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~ 85 (248)
.+++++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+||+|||+++.+.+++.. .+|+
T Consensus 88 ~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 167 (285)
T cd06660 88 RDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPA 167 (285)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCce
Confidence 3479999999999999999999999999999987766 889999999999999999999999999999999888 8999
Q ss_pred eeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHH
Q 025789 86 AVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAA 165 (248)
Q Consensus 86 ~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~ 165 (248)
++|++||++++....+++++|+++||++++|+||++|.++++........ .......+..++.
T Consensus 168 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 230 (285)
T cd06660 168 VNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP-----------------EGDLLEALKEIAE 230 (285)
T ss_pred EEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC-----------------hhhHHHHHHHHHH
Confidence 99999999999765579999999999999999999999886632211111 0114468999999
Q ss_pred HhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhh
Q 025789 166 KYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKT 220 (248)
Q Consensus 166 ~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~ 220 (248)
+++++++|+|++|++++|.++++|+|+++++||++|+++..++||+++++.|+++
T Consensus 231 ~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 231 KHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999763
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.1e-39 Score=281.13 Aligned_cols=200 Identities=24% Similarity=0.383 Sum_probs=168.5
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc---C
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---H 82 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~ 82 (248)
.+++++.+++++++||++|||||||+|+||+|+.. .+.++++++|++++++||||+||+|||++++++.+... .
T Consensus 90 ~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~ 169 (314)
T PLN02587 90 FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPG 169 (314)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcC
Confidence 36789999999999999999999999999999643 34678999999999999999999999999887776543 2
Q ss_pred --CcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHH
Q 025789 83 --PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRL 160 (248)
Q Consensus 83 --~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (248)
.+..+|+.||++++.. .+++++|+++||++++|+||++|+|+++..+. +.. ..+......+.+
T Consensus 170 ~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~~~-~~~~~~~~~~~l 234 (314)
T PLN02587 170 TVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------WHP-APPELKSACAAA 234 (314)
T ss_pred CCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------CCC-CCHHHHHHHHHH
Confidence 2334578899887653 57999999999999999999999999863211 110 013345667788
Q ss_pred HHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccC----CCCCHHHHHHHHhhcCC
Q 025789 161 ETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLA----LKLKEEDLKEICKTIPV 223 (248)
Q Consensus 161 ~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~----~~Lt~~~~~~l~~~~~~ 223 (248)
.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++. .+|+++++++|+++...
T Consensus 235 ~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 235 ATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999976 37999999999998863
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=8.7e-40 Score=280.34 Aligned_cols=195 Identities=17% Similarity=0.209 Sum_probs=166.6
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCccee
Q 025789 10 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSI-EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 87 (248)
Q Consensus 10 ~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 87 (248)
+.+++.+++++++||+||||||||+|++|+|+.. .+. ++++++|++++++||||+||+|||++.++.++....+|+++
T Consensus 82 ~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~ 161 (292)
T PRK14863 82 DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARRFKPDIL 161 (292)
T ss_pred cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhcCCCCEE
Confidence 4578999999999999999999999999999763 333 67899999999999999999999999999888877899999
Q ss_pred ccccCCccccch-hchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHH
Q 025789 88 QMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAK 166 (248)
Q Consensus 88 q~~~~~~~~~~~-~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~ 166 (248)
|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+. . ..+....+..+.+++.+
T Consensus 162 Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~--------~-----~~~~~~~~~~~~~~~~~ 226 (292)
T PRK14863 162 QAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA--------Q-----LKGASGRLSRVRRMIAE 226 (292)
T ss_pred EecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc--------c-----hhhhhHHHHHHHHHHHH
Confidence 999999998653 469999999999999999999999875311 0110 0 11223445677888888
Q ss_pred hCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHh
Q 025789 167 YGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICK 219 (248)
Q Consensus 167 ~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~ 219 (248)
.++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.++++..+++|..
T Consensus 227 ~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 227 GRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred cCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 99999999999999999999999999999999999999998999988877743
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.8e-39 Score=275.93 Aligned_cols=186 Identities=31% Similarity=0.427 Sum_probs=165.1
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCC-----CCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD-----TSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~-----~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
+..+++++.+++++++||+||||||||+|++|+++ ...+.++++++|++++++||||+||+|||++++++++.+.
T Consensus 99 ~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~ 178 (290)
T PRK10376 99 WLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKI 178 (290)
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhh
Confidence 45678999999999999999999999999988842 1235789999999999999999999999999999999888
Q ss_pred CCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHH
Q 025789 82 HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLE 161 (248)
Q Consensus 82 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (248)
.+++++|++||++++.. .+++++|+++||++++|+||+++.. + ..+.+.
T Consensus 179 ~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~--------------------~----------~~~~l~ 227 (290)
T PRK10376 179 AEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP--------------------L----------QSSTLS 227 (290)
T ss_pred CCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh--------------------h----------hhHHHH
Confidence 89999999999999763 6799999999999999999973210 0 014789
Q ss_pred HHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCC
Q 025789 162 TLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPV 223 (248)
Q Consensus 162 ~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~ 223 (248)
++|+++|+|++|+||+|+++++.+.++|+|+++++|+++|++++++.|++++++.|+++.++
T Consensus 228 ~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 228 DVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred HHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999877778999999999999999999999999999999998654
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=254.10 Aligned_cols=192 Identities=28% Similarity=0.445 Sum_probs=174.1
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCcc
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPIT 85 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~ 85 (248)
.+++|+++|..|+|+||++|+|||+|+++||+||+-...+|+.+|+..|.++||+|+.|||||++.+++-+.+. .++.
T Consensus 97 hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~Lv 176 (298)
T COG4989 97 HYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLV 176 (298)
T ss_pred cccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999888776 4578
Q ss_pred eeccccCCcccc-chhchHHHHHHcCCcEEeecccccccc-ccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHH
Q 025789 86 AVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGFF-AGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETL 163 (248)
Q Consensus 86 ~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~l~~G~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 163 (248)
.+|++.|++... ..++.+++|+.+.|..++||||++|-+ +|. ++.....+.+..+
T Consensus 177 tNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~-----------------------~~~q~l~~~l~~i 233 (298)
T COG4989 177 TNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD-----------------------DKFQRLRKVLDRI 233 (298)
T ss_pred hcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------------cchHHHHHHHHHH
Confidence 999999999975 347799999999999999999998833 221 2344566799999
Q ss_pred HHHhC-CCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcC
Q 025789 164 AAKYG-CTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIP 222 (248)
Q Consensus 164 a~~~~-~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~ 222 (248)
|+++| +|.++++++|++.+|.-..+|+|+.+++++++.++++++.||.+++-+|..+..
T Consensus 234 a~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 234 AEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred HHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 99999 799999999999999999999999999999999999999999999999987753
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.2e-37 Score=265.24 Aligned_cols=182 Identities=26% Similarity=0.390 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCccee
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAV 87 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~ 87 (248)
.+++.+++++++||+|||+||||+|+||+|++.. +..++|++|++++++||||+||+|||+++++++++.. .++.++
T Consensus 80 ~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~ 159 (275)
T PRK11565 80 DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVIN 159 (275)
T ss_pred cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceee
Confidence 3578999999999999999999999999998653 4789999999999999999999999999999988754 356889
Q ss_pred ccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHh
Q 025789 88 QMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKY 167 (248)
Q Consensus 88 q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~ 167 (248)
|++||++.+. .+++++|+++||++++|+||++|.- + .|. .+.+.++|+++
T Consensus 160 Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----------------~~~----------~~~l~~ia~~~ 209 (275)
T PRK11565 160 QIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----------------VFD----------QKVIRDLADKY 209 (275)
T ss_pred eeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----------------ccc----------CHHHHHHHHHh
Confidence 9999999874 6799999999999999999997630 0 010 13789999999
Q ss_pred CCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhhcCCC
Q 025789 168 GCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKTIPVD 224 (248)
Q Consensus 168 ~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~~~~~ 224 (248)
|+|++|+||||+++++. ++|+|+++++|+++|++++++.||++++++|+++....
T Consensus 210 g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 210 GKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred CCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 99999999999999986 68999999999999999999999999999999997644
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.98 E-value=3.1e-31 Score=215.76 Aligned_cols=198 Identities=20% Similarity=0.299 Sum_probs=169.1
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-- 81 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-- 81 (248)
.+|||++.+++|+++||+||++||+|++++|..+.. ..+.|++.+|++++++||||+||++.++.+.+.++.+.
T Consensus 114 ~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~ 193 (342)
T KOG1576|consen 114 MFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGK 193 (342)
T ss_pred cccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCC
Confidence 489999999999999999999999999999997643 34679999999999999999999999999999998876
Q ss_pred CCcceec--cccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHH
Q 025789 82 HPITAVQ--MEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTR 159 (248)
Q Consensus 82 ~~~~~~q--~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (248)
+.++++. ..|++.+... -..++..+..|++|++-++++.|+|+.+.++.+.|. .++..+...+
T Consensus 194 G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPa--------------S~Elk~~a~~ 258 (342)
T KOG1576|consen 194 GRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPA--------------SDELKEAAKA 258 (342)
T ss_pred CceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCC--------------CHHHHHHHHH
Confidence 4567776 6777777643 457788889999999999999999998876665554 2456666778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhh
Q 025789 160 LETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKT 220 (248)
Q Consensus 160 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~ 220 (248)
-.++|++.|+....+|++|.++.+.++++++|+++.++|+.|+++....||..+-++...+
T Consensus 259 aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~ 319 (342)
T KOG1576|consen 259 AAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRI 319 (342)
T ss_pred HHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHH
Confidence 8999999999999999999999999999999999999999999987778887444443333
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.97 E-value=2.4e-31 Score=225.63 Aligned_cols=185 Identities=24% Similarity=0.366 Sum_probs=161.1
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcCcccEEeccCCc-HHHHHHHhccC
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIE-----DTMGELKKLVEEGKIKYIGLSEAS-ADTIRRAHAVH 82 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvS~~~-~~~l~~~~~~~ 82 (248)
+--+++.+++-++++|++|||||+|+|+||..+.+ .++ +++++++++|++||||++|+|.|+ .+.+.+++...
T Consensus 88 ~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~ 166 (391)
T COG1453 88 PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAY 166 (391)
T ss_pred cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcC
Confidence 34478999999999999999999999999998763 332 379999999999999999999995 78899999999
Q ss_pred CcceeccccCCccccch--hchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHH
Q 025789 83 PITAVQMEYSLWTREIE--DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRL 160 (248)
Q Consensus 83 ~~~~~q~~~~~~~~~~~--~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (248)
++|++|++||+++.... .+.+.+|.++|++|+.++|+.+|-|..+ .| +++
T Consensus 167 ~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP-----------------------~~~ 218 (391)
T COG1453 167 PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP-----------------------EKL 218 (391)
T ss_pred CcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC-----------------------HHH
Confidence 99999999999998644 3789999999999999999999876532 11 378
Q ss_pred HHHHHHhC--CCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC--C-CCHHHHHHHHhhcC
Q 025789 161 ETLAAKYG--CTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL--K-LKEEDLKEICKTIP 222 (248)
Q Consensus 161 ~~ia~~~~--~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~--~-Lt~~~~~~l~~~~~ 222 (248)
.+++++.+ .||+..|+||++++|.|+++++||++++|++||++..+. + ||++|++-|.++.+
T Consensus 219 ~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~ 285 (391)
T COG1453 219 EELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEE 285 (391)
T ss_pred HHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHH
Confidence 88888875 589999999999999999999999999999999998763 3 99999888877653
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.16 E-value=4.7e-06 Score=67.91 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCcceeccccCCccccchhchHHHHHHcCCcEEeec
Q 025789 46 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 46 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 117 (248)
+.+.|+.||+++.+|+|..||+|.++..++++++.. ..|.++|+...-.+.-+ .++.++|.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999887 56788999888777655 789999999999998865
No 19
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=94.24 E-value=1.3 Score=37.48 Aligned_cols=109 Identities=20% Similarity=0.159 Sum_probs=68.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEE-eccCCCC-CCHH----HHHHHHHHHHHcCcccEEeccCCcHHH
Q 025789 1 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VSIE----DTMGELKKLVEEGKIKYIGLSEASADT 74 (248)
Q Consensus 1 ~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~-lH~~~~~-~~~~----~~~~~l~~l~~~G~ir~iGvS~~~~~~ 74 (248)
|+|+|.+ ++.+.+.+..++.+ +-|-|+||+=- --+|+.. ...+ .+...++.+++.-.+- +.+-+++++.
T Consensus 14 F~dg~~~---~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v 88 (257)
T cd00739 14 FSDGGRF---LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEV 88 (257)
T ss_pred CCCCCCC---CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHH
Confidence 5666644 56677777666654 66889999853 2344432 2222 3444566666653443 7888999999
Q ss_pred HHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeecc
Q 025789 75 IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 75 l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 118 (248)
++++++.+..-.+ ..+..... .++++.++++|..++.+..
T Consensus 89 ~e~al~~G~~iIN--disg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 89 ARAALEAGADIIN--DVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHhCCCEEE--eCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 9999987532222 22332221 5688999999999999543
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=91.80 E-value=1.4 Score=35.37 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred CCCCCCHHHHHHHH-----------HHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHH
Q 025789 7 IGVKGSPEYVRKCC-----------EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 75 (248)
Q Consensus 7 ~~~~~s~~~i~~~~-----------e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 75 (248)
++.+.+.+.+.+++ ++-|....-+.+|.+.+...= +.+..--..|+++.+=|+-.-+++.||.-...
T Consensus 40 ~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 40 YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRN 117 (193)
T ss_pred EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHH
Confidence 45567777777775 445555555566666664421 11223345577778889988899999986554
Q ss_pred HHH-h-ccCCcceeccccCCccccch-----hchHHHHHHcCCcEEeeccccccc
Q 025789 76 RRA-H-AVHPITAVQMEYSLWTREIE-----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 76 ~~~-~-~~~~~~~~q~~~~~~~~~~~-----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.-- . .-.-|..-..+|+.++...- .+..++|++.|+.+.-..++.++.
T Consensus 118 R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 118 RLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 432 2 33445667889999987521 788999999999999998888653
No 21
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.05 E-value=11 Score=31.89 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=67.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEE-EeccCCCC-CCHH-H---HHHHHHHHHHc-CcccEEeccCCcHH
Q 025789 1 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLY-YQHRVDTS-VSIE-D---TMGELKKLVEE-GKIKYIGLSEASAD 73 (248)
Q Consensus 1 ~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~-~lH~~~~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvS~~~~~ 73 (248)
|+|+|.+ .+++.+.+..++.+ .-|.|+||+= .--+|+.. ...+ | +...++.+++. +. -+.+-+++++
T Consensus 13 F~dg~~~---~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~ 86 (257)
T TIGR01496 13 FSDGGRF---LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAE 86 (257)
T ss_pred CCCCCCC---CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHH
Confidence 5566543 56677777766654 6689999993 12233322 1222 3 55666666665 43 4888899999
Q ss_pred HHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeec
Q 025789 74 TIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 74 ~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 117 (248)
.++++++.+..-.+-+ +... ..++++.++++|..++.+.
T Consensus 87 vi~~al~~G~~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 87 VARAALEAGADIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHcCCCEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 9999998753323322 2221 2568899999999999854
No 22
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.29 E-value=3.5 Score=34.44 Aligned_cols=108 Identities=20% Similarity=0.189 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEeccCCcHHHHHHHhccCCcce
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
+..++.+...+-++. |.++|+++|++-..-.+......++.++.++.+++.+ .++...++......++.+.+.. ++.
T Consensus 13 ~~~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~ 90 (265)
T cd03174 13 GATFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDE 90 (265)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCE
Confidence 345677777765554 8899999988877654422212345788888888888 5777677765566677776654 566
Q ss_pred eccccCCcc--------cc------chhchHHHHHHcCCcEEeec
Q 025789 87 VQMEYSLWT--------RE------IEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 87 ~q~~~~~~~--------~~------~~~~~~~~~~~~gi~v~~~~ 117 (248)
+++.+..-+ +. .....+..++++|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 666665441 11 11467788899998876544
No 23
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=87.75 E-value=15 Score=30.82 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEE-eccCCCC-CC----HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCc
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VS----IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPI 84 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~-lH~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 84 (248)
.+.+.+.+..++.+ .-|-|+||+=- --+|+.. .+ .+.+...++.+++.-.+ -+.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46677777666554 67889999863 3334321 11 23456677777665333 378899999999999987632
Q ss_pred ceeccccCCccccchhchHHHHHHcCCcEEeecccc
Q 025789 85 TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 85 ~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
-.+ .-+.... ..++++.++++|..++.+..-+
T Consensus 99 iIN--dis~~~~--~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 99 IIN--DVSGGRG--DPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred EEE--eCCCCCC--ChHHHHHHHHcCCCEEEECcCC
Confidence 222 2222221 1568899999999998876443
No 24
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=84.99 E-value=22 Score=30.02 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCcceecc
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQM 89 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~ 89 (248)
+.+.+.+...+. .+-|-|+||+-.= .......+.+...++.+++.-. .-+.+-+++++.++++++. +..-++
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iIN-- 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLIN-- 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEE--
Confidence 344444444433 4678999998753 2222223445566666665423 2478889999999999886 332222
Q ss_pred ccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 025789 90 EYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC 169 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 169 (248)
.-+..... ...+++.++++|..++...--..|. | ...+...+.++.+.+.+.+.|+
T Consensus 97 sIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P-------------~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------P-------------KDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHcCC
Confidence 22222211 2568899999999998764332332 0 0012233444566667778887
Q ss_pred CHHHH
Q 025789 170 TTPQL 174 (248)
Q Consensus 170 s~~q~ 174 (248)
++.++
T Consensus 153 ~~~~I 157 (261)
T PRK07535 153 PPEDI 157 (261)
T ss_pred CHhHE
Confidence 65543
No 25
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=84.93 E-value=9.3 Score=32.25 Aligned_cols=103 Identities=13% Similarity=0.033 Sum_probs=61.9
Q ss_pred HHHHHHcCcccEEec-cCCcHHHHHHHhcc--CCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccc
Q 025789 53 LKKLVEEGKIKYIGL-SEASADTIRRAHAV--HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAV 129 (248)
Q Consensus 53 l~~l~~~G~ir~iGv-S~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~ 129 (248)
|.+..++|+. -+|+ .......+.+++.. ..|.++-.+.++++......++..|+..|+..+.+-|-..
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~-------- 80 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE-------- 80 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 4455556774 4443 22222333444444 3444555688888765446678888899998888766542
Q ss_pred cCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC
Q 025789 130 VESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL 207 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 207 (248)
...+..+|..+....++|-+.+.++.++.+++..+
T Consensus 81 -------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 -------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred -------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 12345556666666677777777777776666555
No 26
>PRK13753 dihydropteroate synthase; Provisional
Probab=84.22 E-value=26 Score=30.04 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEE-eccCCCC-CCH----HHHHHHHHHHHHcCcccEEeccCCcHHH
Q 025789 1 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYY-QHRVDTS-VSI----EDTMGELKKLVEEGKIKYIGLSEASADT 74 (248)
Q Consensus 1 ~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~-lH~~~~~-~~~----~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 74 (248)
|.|+|.+ ++.+.+.+..++.+ .-|.|-||+=- -.+|... .+. +.+...++.+++.+. .|.|-++.++.
T Consensus 15 FsDGg~~---~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~v 88 (279)
T PRK13753 15 FFDESRR---LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPET 88 (279)
T ss_pred CCCCCCC---CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHH
Confidence 5677754 46677777777654 56777777744 2235432 222 234578888887753 48999999999
Q ss_pred HHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeecccc
Q 025789 75 IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 75 l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
++++++.+- +.+ +..+-+. ...+.+.+.+++++++.+...+
T Consensus 89 a~~al~aGa-diI-NDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 89 QRYALKRGV-GYL-NDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred HHHHHHcCC-CEE-EeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 999987642 322 1112222 2567888999999998876654
No 27
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=83.89 E-value=3.5 Score=33.61 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccC
Q 025789 23 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 92 (248)
Q Consensus 23 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 92 (248)
....+|.||+=+++..........+.+-+..+.+ .+.++.+||. |.+++.+.++.+...++++|+.-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 4567999999997544433334444443333322 3568889996 778999999999999999999753
No 28
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=81.24 E-value=18 Score=30.76 Aligned_cols=103 Identities=14% Similarity=0.108 Sum_probs=61.6
Q ss_pred HHHHHHcCcccEEec-cCCcHHHHHHHhccCCcc--eeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccc
Q 025789 53 LKKLVEEGKIKYIGL-SEASADTIRRAHAVHPIT--AVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAV 129 (248)
Q Consensus 53 l~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~--~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~ 129 (248)
|.+..++|+.- +|+ .......+.+++....|| ++-.+.++++......++..++..|+..+.+-|-..
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~-------- 79 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS-------- 79 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC--------
Confidence 44555567753 333 333223333433333344 456688888875445677788888888777665331
Q ss_pred cCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC
Q 025789 130 VESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL 207 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 207 (248)
...+..+|..+.-..++|-+.+.++.++.+++.++
T Consensus 80 -------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rY 114 (267)
T PRK10128 80 -------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRY 114 (267)
T ss_pred -------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCC
Confidence 13445566776666777777777777777776665
No 29
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=81.22 E-value=0.95 Score=39.94 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=38.1
Q ss_pred cCcccEEeccCCcHHHHHHHhccCC-cceeccccCCccccchhchHHHHHHcCCc
Q 025789 59 EGKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTREIEDDIIPLCRELGIG 112 (248)
Q Consensus 59 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 112 (248)
-|+|||+||--++.+++.++..... -+..+.+..++-......+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 3999999999999999998876532 34444455554433346677778887776
No 30
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.10 E-value=14 Score=31.17 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CcccEEecc---CCcHHHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEE-GKIKYIGLS---EASADTIRR 77 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvS---~~~~~~l~~ 77 (248)
++..++.+...+-++ .|.++|+++|++-+...... ..+....++.++.+++. +.++...+. ......++.
T Consensus 15 ~~~~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 15 VRHQFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred CCeecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHH
Confidence 456678888777554 59999999999986532110 01112234455555433 346665554 234666777
Q ss_pred HhccCCcceeccccCCccccchhchHHHHHHcCCcEEee
Q 025789 78 AHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 78 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~ 116 (248)
+.+. .++.+.+..+.-+.....+.+.+++++|+.+...
T Consensus 94 a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 94 AADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 6654 3556655444433222366888899999876553
No 31
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=79.36 E-value=18 Score=30.39 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=37.5
Q ss_pred HHHHHcCcccEEec-cCCcHHHHHHHhccC--CcceeccccCCccccchhchHHHHHHcCCcEEeecccc
Q 025789 54 KKLVEEGKIKYIGL-SEASADTIRRAHAVH--PITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 54 ~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
.+..++|+. .+|+ .+.....+.+++... .+.++-.+.++++...-..++..++..|+..+.+-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 334445664 3443 233223334444443 34455568888876544667777888888888876553
No 32
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.25 E-value=13 Score=32.14 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeecccccc
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
-++.+.++++...|. ..|=+-++...+.++++....+.+|+.-...-. .....+..+|+++|+.++..+-+.++
T Consensus 216 d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 216 DDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 355667777776665 445566788889899888888999887655321 11267899999999999987665544
No 33
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=78.78 E-value=14 Score=31.06 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeeccccccc
Q 025789 50 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 50 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
++.+.++++.-.+. ..|=+-++...+.++++...++++|+..+..-. .....+...|+++|+.++..+.+.+|+
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHH
Confidence 46666777665554 445566788888888888888888887665432 112678899999999999876665543
No 34
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=78.62 E-value=48 Score=29.91 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=63.2
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCccee
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 87 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 87 (248)
..+.+.+.+.+.+++..+ |=+|.+-||.-- ..+.++.++++| |..|+-+-....+...+....
T Consensus 134 ~~~mt~d~~~~~ie~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~~---- 196 (423)
T TIGR00190 134 VEDMDEDDMFRAIEKQAK----DGVDFMTIHAGV-------LLEYVERLKRSG--RITGIVSRGGAILAAWMLHHH---- 196 (423)
T ss_pred hhhCCHHHHHHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhCC--CccCeecCcHHHHHHHHHHcC----
Confidence 356788889888888876 457889999842 567788889888 456666666666655543321
Q ss_pred ccccCCccccchhchHHHHHHcCCcEEeeccccccc
Q 025789 88 QMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 88 q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.=|++-..+ +.+++.|+++++.+ +|+-|+
T Consensus 197 --~ENPlye~f-D~lLeI~~~yDVtl----SLGDgl 225 (423)
T TIGR00190 197 --KENPLYKNF-DYILEIAKEYDVTL----SLGDGL 225 (423)
T ss_pred --CcCchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 234444433 67999999999988 455554
No 35
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=78.45 E-value=6.1 Score=32.26 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=45.8
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccC
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 92 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 92 (248)
...+|.||+=+.+..........+.+-+....+ .+.+..+||. +.+++.+.++++...++++|+.-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 456999999997544322333343333333222 3568899997 668999999999999999999654
No 36
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=78.22 E-value=14 Score=30.17 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=53.1
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecc-CCcHHHHHHHhccCCcceeccccCCccccchhc
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLS-EASADTIRRAHAVHPITAVQMEYSLWTREIEDD 101 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~ 101 (248)
...+|.||+=+++.-........+ ...++.+... +..+||. |.+.+.+.+++....++.+|+.-.. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~----~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPE----QAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHH----HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 457899998877655322333333 3333343333 8899997 5689999999999999999987663 234
Q ss_pred hHHHHHHc-CCcEE
Q 025789 102 IIPLCREL-GIGIV 114 (248)
Q Consensus 102 ~~~~~~~~-gi~v~ 114 (248)
.++..++. ++.++
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 55555544 35554
No 37
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=77.37 E-value=17 Score=29.73 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=59.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHc
Q 025789 32 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 109 (248)
Q Consensus 32 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 109 (248)
.++.++-.|-+.. -++.+.++++...+. ..+=|.++...+.+++....++++|+..+..-.- ...++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4555665554322 356677777777665 4455667788888888888888998876654321 125788999999
Q ss_pred CCcEEeecccccc
Q 025789 110 GIGIVAYSPLGRG 122 (248)
Q Consensus 110 gi~v~~~~~l~~G 122 (248)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776654
No 38
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=76.67 E-value=42 Score=29.95 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=59.9
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CcccEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHH
Q 025789 34 LYYQHRVDTSVSIEDTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLC 106 (248)
Q Consensus 34 l~~lH~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~ 106 (248)
++++-.|-+....++-++.+.++++. +.=-..|-|.++...+.++++..-.+++|+..+-.-.- ....+.++|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 45666665433322346677777766 33345566778899999999988889999987764321 126789999
Q ss_pred HHcCCcEEeeccc
Q 025789 107 RELGIGIVAYSPL 119 (248)
Q Consensus 107 ~~~gi~v~~~~~l 119 (248)
+.+||.++..+..
T Consensus 309 ~a~Gi~~~~h~~~ 321 (369)
T cd03314 309 KEHGVGAYLGGSC 321 (369)
T ss_pred HHcCCcEEEeCCC
Confidence 9999999987543
No 39
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=75.69 E-value=19 Score=31.46 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=53.6
Q ss_pred HhHcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHcCcccE-EeccCC---cHHHHHHHhccCCc-ceeccccCCccc
Q 025789 24 LKRLDVDYIDLYYQHR-VDT-SVSIEDTMGELKKLVEEGKIKY-IGLSEA---SADTIRRAHAVHPI-TAVQMEYSLWTR 96 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~-~~~-~~~~~~~~~~l~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~~-~~~q~~~~~~~~ 96 (248)
-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..|.. +++.++++++...- ..+-..-+ ..
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat--~e 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE--ED 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--HH
Confidence 4588988888876443 222 2234455555555544433333 555533 67888887664210 01111111 11
Q ss_pred cchhchHHHHHHcCCcEEeeccc
Q 025789 97 EIEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 97 ~~~~~~~~~~~~~gi~v~~~~~l 119 (248)
+ -+.+.+.|+++|..+++.+|.
T Consensus 163 n-~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 163 N-YKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred H-HHHHHHHHHHhCCeEEEEcHH
Confidence 2 267999999999999998755
No 40
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=75.51 E-value=53 Score=30.40 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH----cCcccEEecc--CCcHHHHHHHhccC
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE----EGKIKYIGLS--EASADTIRRAHAVH 82 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~----~G~ir~iGvS--~~~~~~l~~~~~~~ 82 (248)
...+.+.|.+.++. ++++|...+=|+-=..| +..+++-+.++++.+++ .|.++.++++ ..+.+.+.++.+.+
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 45789999999975 57899777655421111 34567767777777775 5777777775 44677787776653
Q ss_pred --CcceeccccCC-----ccc-----cch--hchHHHHHHcCCcEEeeccc
Q 025789 83 --PITAVQMEYSL-----WTR-----EIE--DDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 83 --~~~~~q~~~~~-----~~~-----~~~--~~~~~~~~~~gi~v~~~~~l 119 (248)
.+.+.|--||. +.+ ..+ -+.++.+++.||.-++.+.|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 23334444432 111 111 45678888899874444333
No 41
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=73.87 E-value=42 Score=30.39 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=67.7
Q ss_pred CCCCCCCCCC------CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEecc--CC
Q 025789 1 MLDGVSIGVK------GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EA 70 (248)
Q Consensus 1 ~~~~~~~~~~------~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--~~ 70 (248)
|+++++|... ++++...+-+.+-+++ .+++++-.|-...+ ++.+.++.+.- .+.-.|=- .+
T Consensus 245 ~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~ 315 (408)
T cd03313 245 FYDEGKYVYDSDEGKKLTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVT 315 (408)
T ss_pred hcccCcceeccCCCcccCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccC
Confidence 3455655543 5556555555555444 35778887755443 55566666663 44433322 34
Q ss_pred cHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEe
Q 025789 71 SADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 71 ~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~ 115 (248)
++..+.++++....+++|+..+-.-.- ...++...|+.+|+.++.
T Consensus 316 ~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 316 NPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 799999999988888998877754321 125688999999999865
No 42
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=73.56 E-value=71 Score=28.95 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=65.1
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcce
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
-..+.+.+.+.+.+++..+ |=+|.+-||.-- ..+.++.++++| |..|+-+-....+...+....
T Consensus 136 ~~~~mt~d~~~~~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n~--- 199 (431)
T PRK13352 136 SVVDMTEDDLFDVIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSG--RIMGIVSRGGSFLAAWMLHNN--- 199 (431)
T ss_pred ChhhCCHHHHHHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcC--CccCeecCCHHHHHHHHHHcC---
Confidence 3457889999999998877 458889999842 567788889888 456776666666655543221
Q ss_pred eccccCCccccchhchHHHHHHcCCcEEeeccccccc
Q 025789 87 VQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 87 ~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.=|++-..+ +.+++.|+++++.+ +|+-|+
T Consensus 200 ---~ENPlye~f-D~lLeI~~~yDVtl----SLGDgl 228 (431)
T PRK13352 200 ---KENPLYEHF-DYLLEILKEYDVTL----SLGDGL 228 (431)
T ss_pred ---CcCchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 334444443 77999999999988 455554
No 43
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=72.74 E-value=56 Score=27.44 Aligned_cols=105 Identities=12% Similarity=0.046 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCcceec
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQ 88 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q 88 (248)
.+.+.+.+..++.++ -|-|+||+=. .|......++..+.+..+++.-. .-|.+-+++++.++++++. +..-++
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN- 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN- 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE-
Confidence 456677777666664 5999999865 23321223333344333333222 2478889999999999886 332222
Q ss_pred cccCCcc--ccchhchHHHHHHcCCcEEeecccccc
Q 025789 89 MEYSLWT--REIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 89 ~~~~~~~--~~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
.-+... .. ...+++.++++|..++.+..-..|
T Consensus 98 -sIs~~~~~e~-~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 -SINLEDGEER-FLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred -eCCCCCCccc-cHHHHHHHHHhCCCEEEeccCCCC
Confidence 223322 11 256778899999999887544333
No 44
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=72.68 E-value=29 Score=29.30 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVSI---EDTMGELKKLV 57 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~l~~l~ 57 (248)
|-..++++. ++.++++|++.|+ ...|+++|-.|....+. .++++.|.+++
T Consensus 108 ~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~ 186 (254)
T COG1121 108 WFRRLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186 (254)
T ss_pred ccccccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 444556666 7889999998884 45689999888766554 46899999999
Q ss_pred HcCcccEEeccCCcHHHHHHHhc
Q 025789 58 EEGKIKYIGLSEASADTIRRAHA 80 (248)
Q Consensus 58 ~~G~ir~iGvS~~~~~~l~~~~~ 80 (248)
++|+ .|=+.+|+...+.+..+
T Consensus 187 ~eg~--tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 187 QEGK--TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred HCCC--EEEEEeCCcHHhHhhCC
Confidence 9977 67778888887776644
No 45
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=72.42 E-value=39 Score=28.57 Aligned_cols=106 Identities=13% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC------CCHHHHHHHHHHHHHcCcccEEeccCC---cHHHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGKIKYIGLSEA---SADTIRR 77 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~------~~~~~~~~~l~~l~~~G~ir~iGvS~~---~~~~l~~ 77 (248)
++..++.+...+ +-+.|.++|+|+|++=+....... ....+.++.+....+ +..+..+++.. +.+.+..
T Consensus 13 ~~~~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~ 90 (266)
T cd07944 13 NNWDFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEP 90 (266)
T ss_pred cCccCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHH
Confidence 356788888777 555599999999999876543211 011455555555443 34666666543 3566666
Q ss_pred HhccCCcceeccccCCccccchhchHHHHHHcCCcEEe
Q 025789 78 AHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 78 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~ 115 (248)
+.+. .++.+.+.+..-+-....+.+.+++++|+.+..
T Consensus 91 a~~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 91 ASGS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred HhcC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEE
Confidence 5443 345555544332222236678889999987654
No 46
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=71.71 E-value=51 Score=28.52 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=66.2
Q ss_pred HHHhHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCccc-EEeccCC---cHHHHHHHhccCC-cceecccc
Q 025789 22 ASLKRLDVDYIDLYYQHRVDT-----SVSIEDTMGELKKLVEEGKIK-YIGLSEA---SADTIRRAHAVHP-ITAVQMEY 91 (248)
Q Consensus 22 ~SL~rL~~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~ir-~iGvS~~---~~~~l~~~~~~~~-~~~~q~~~ 91 (248)
+..++.| .|++-||-... +.+..|+.+.|+++.+.=++- .||-|+. +++.++++.+..- =.+....-
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 4456777 57888886633 356789999999999998874 5688876 5788888766521 12333334
Q ss_pred CCccccchhchHHHHHHcCCcEEeeccccc
Q 025789 92 SLWTREIEDDIIPLCRELGIGIVAYSPLGR 121 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~ 121 (248)
|+ +... ..+.+.+.++|=.|++|+++.-
T Consensus 235 nl-dlDy-~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 235 NL-DLDY-ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cc-ccCH-HHHHHHHHhcCceEEEeeccCh
Confidence 43 2221 6688999999999999999863
No 47
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=69.85 E-value=27 Score=31.44 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeecccc
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
-++.+.++++...+. ..|-|.++..++.++++...++++|......-.- ...++...|+.+|+.++.++...
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 466677777776654 5666777888888888888888888876653321 12678999999999999887653
No 48
>PRK00077 eno enolase; Provisional
Probab=69.78 E-value=65 Score=29.35 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=68.5
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEeccC--CcHHH
Q 025789 2 LDGVSIGV---KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE--ASADT 74 (248)
Q Consensus 2 ~~~~~~~~---~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~--~~~~~ 74 (248)
++++.|.. .++++...+.+.+.+++ .++++|-.|-... -++.+.++.+.- +|.-.|=-. .++..
T Consensus 249 ~~~~~y~~~~~~~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~ 319 (425)
T PRK00077 249 YKDGKYVLEGEGLTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKR 319 (425)
T ss_pred ccCCeeeccCCcCCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHH
Confidence 44555543 24666666666666555 3577787775433 355666666663 555544332 36899
Q ss_pred HHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEe
Q 025789 75 IRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 75 l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~ 115 (248)
+.++++....+++|+..+-.-.- ...++..+|+.+|+.++.
T Consensus 320 ~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 320 LKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred HHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 99999988888998877754321 126788999999998664
No 49
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=69.53 E-value=48 Score=27.79 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHHcCcccEEec--cCCcHHHHHHHhcc-CCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccc
Q 025789 53 LKKLVEEGKIKYIGL--SEASADTIRRAHAV-HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAV 129 (248)
Q Consensus 53 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~ 129 (248)
|.+..++|+. -+|+ ...++..++.+... ..+.++-.+.++++......++..++..|+.++.+-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~-------- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD-------- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC--------
Confidence 3444556775 3443 33345555554443 3344455578887654224466666677777776643321
Q ss_pred cCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC
Q 025789 130 VESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL 207 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 207 (248)
+ .-++.++..+.-..++|-+.+++++++.+++..+
T Consensus 74 -----------------------------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 -----------------------------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred -----------------------------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 1455666666666777777777777777766654
No 50
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=69.02 E-value=44 Score=29.60 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=61.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHc
Q 025789 32 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 109 (248)
Q Consensus 32 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 109 (248)
.++.++-.|-+. +-++.+.+|++...+. ..|=|.++...+..++....++++|+.....-.- ...++.+.|+.+
T Consensus 189 ~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~ 264 (361)
T cd03322 189 YRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLY 264 (361)
T ss_pred cCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 355666555322 3467788888887765 7788888999999999988899999887653321 126789999999
Q ss_pred CCcEEeeccc
Q 025789 110 GIGIVAYSPL 119 (248)
Q Consensus 110 gi~v~~~~~l 119 (248)
|+.++.++..
T Consensus 265 gi~~~~h~~~ 274 (361)
T cd03322 265 GVRTGWHGPT 274 (361)
T ss_pred CCeeeccCCC
Confidence 9999876544
No 51
>PRK05414 urocanate hydratase; Provisional
Probab=68.64 E-value=18 Score=33.48 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=46.0
Q ss_pred HHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 22 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 22 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
+.-+|+.+.|+|.+- ..++++++..++.+++|+...||+-..-.+.++++.+.
T Consensus 202 ri~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 202 RIDKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred HHHHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 344688899999764 46899999999999999999999999999999998876
No 52
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=68.31 E-value=29 Score=31.41 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHc------CcccEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeeccc
Q 025789 48 DTMGELKKLVEE------GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 48 ~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~l 119 (248)
+.++.+.++++. +.=-..+=|.++.+.+.+++...-.+++|+..+-.-.- ...++.++|+.+||.++..+..
T Consensus 279 ~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 279 AQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 346666666655 22334455677899999998888888999877754321 1267899999999999987665
No 53
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=68.28 E-value=18 Score=33.37 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 22 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 22 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
+.-+|+.+.|+|.+- ..++|+++..++.+++|+...||+-+.-.+.++++.+.
T Consensus 193 ri~kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 193 RIDKRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred HHHHHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHc
Confidence 345688899999764 46899999999999999999999999999999998876
No 54
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=67.67 E-value=71 Score=28.07 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEe--------c-cCCCCCCHHHHHHHHHHHHHcCcccEEeccC-CcHHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQ--------H-RVDTSVSIEDTMGELKKLVEEGKIKYIGLSE-ASADTIR 76 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~l--------H-~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~ 76 (248)
+++.++.+.+.+ +-+.|.+.|+++|.+-+. . .+.. .+..+.++.+.+..+.-++..+-+.+ .+.+.++
T Consensus 17 ~~~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 17 IRHQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCCcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCCCCEEEEEeccCccCHHHHH
Confidence 456788888877 555699999999999622 1 1111 12223333333333333333222222 2567777
Q ss_pred HHhccCCcceeccccCCccccchhchHHHHHHcCCcEEe
Q 025789 77 RAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 77 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~ 115 (248)
.+.+. .++.+.+..+.-+-....+.+.++++.|+.+..
T Consensus 95 ~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 95 AAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 77665 356666655543332236788999999987654
No 55
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=66.60 E-value=65 Score=27.63 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEe-ccCCCC-CCH-HH---HHHHHHHHHHcCcccEEeccCCcHHH
Q 025789 1 MLDGVSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQ-HRVDTS-VSI-ED---TMGELKKLVEEGKIKYIGLSEASADT 74 (248)
Q Consensus 1 ~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~l-H~~~~~-~~~-~~---~~~~l~~l~~~G~ir~iGvS~~~~~~ 74 (248)
|.|+|.+ ++.+.+.+..++.+ .-|-|-||+=-- .+|... .+. +| +...++.+++.-.+ -|.|-++.++.
T Consensus 28 Fsdgg~~---~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~v 102 (282)
T PRK11613 28 FSDGGTH---NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEV 102 (282)
T ss_pred CCCCCCC---CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHH
Confidence 5566654 46666666665554 557677776422 224332 222 33 56677777755232 48888999999
Q ss_pred HHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeec
Q 025789 75 IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 75 l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 117 (248)
++++++.+---++-+ .++ . ..+.++.++++|..++.+.
T Consensus 103 a~~AL~~GadiINDI-~g~-~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 103 IRESAKAGAHIINDI-RSL-S---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred HHHHHHcCCCEEEEC-CCC-C---CHHHHHHHHHcCCCEEEEc
Confidence 999998753222222 122 1 2467788999999998874
No 56
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=66.42 E-value=38 Score=29.69 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeecc
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~ 118 (248)
.++.+..+++.-.+. ..|=|.++++.+.++++...++++|+.....-.- ....+...|+++|+.++..+-
T Consensus 228 ~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 228 DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 456667777765554 4455667889999999888889998876654321 126789999999999887653
No 57
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=64.82 E-value=74 Score=28.00 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=61.7
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccC--------CCCCCHHHHHHHHHHHHHcCcccEEecc---CCcHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRV--------DTSVSIEDTMGELKKLVEEGKIKYIGLS---EASADTI 75 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~--------~~~~~~~~~~~~l~~l~~~G~ir~iGvS---~~~~~~l 75 (248)
+++.++.+.+.+-+ +.|.+.|+++|.+-+.-.. ....+..+.++.+.+.. ...+...+. ..+.+.+
T Consensus 18 ~~~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 18 VRHQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CCCccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHH
Confidence 35678888887755 5599999999999643110 11122334444443332 334444433 2256777
Q ss_pred HHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEee
Q 025789 76 RRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 76 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~ 116 (248)
+.+.+. .++.+.+..+.-+.....+.+.+++++|+.+...
T Consensus 95 ~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 776654 3455555554433333367889999999877654
No 58
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=64.26 E-value=79 Score=28.01 Aligned_cols=101 Identities=9% Similarity=0.001 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcc
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPIT 85 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 85 (248)
..++.+.-.+ +-+.|.++|+++|++-..-.|..- ...+++++.+. +...+++.++. .+...++.+++... +
T Consensus 63 ~~~s~e~Ki~-ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~---~~~~~~~~~l~-~n~~die~A~~~g~-~ 136 (347)
T PLN02746 63 NIVPTSVKVE-LIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVR---NLEGARFPVLT-PNLKGFEAAIAAGA-K 136 (347)
T ss_pred CCCCHHHHHH-HHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHH---hccCCceeEEc-CCHHHHHHHHHcCc-C
Confidence 3456655444 556699999999998754444221 12234555553 33335555553 47788888877532 2
Q ss_pred eeccc---------cCCccccch-----hchHHHHHHcCCcEEe
Q 025789 86 AVQME---------YSLWTREIE-----DDIIPLCRELGIGIVA 115 (248)
Q Consensus 86 ~~q~~---------~~~~~~~~~-----~~~~~~~~~~gi~v~~ 115 (248)
.+.+. .|+-....+ .+.+.+++++|+.+.+
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 23222 222111101 4688999999998853
No 59
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=63.72 E-value=39 Score=29.86 Aligned_cols=74 Identities=8% Similarity=0.086 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeecccccc
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
.++.+.+++++..|. ..|=|.++..++..+++...++.+|+.....-. ....++..+|+++|+.++..+-..+|
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 456777777776554 566677788888888888778888886554321 11267889999999998875444433
No 60
>TIGR00035 asp_race aspartate racemase.
Probab=62.94 E-value=36 Score=27.97 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCcccEEeccCCcHH
Q 025789 6 SIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------------VSIEDTMGELKKLVEEGKIKYIGLSEASAD 73 (248)
Q Consensus 6 ~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 73 (248)
+.++--+-+..++-++.+=.+.+-++++.+.+++|+.. .+...+.+.++.|.+.| +.+|.+.+.+..
T Consensus 9 Gmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah 87 (229)
T TIGR00035 9 GMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAH 87 (229)
T ss_pred CcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHH
Confidence 35556667777877888878899999999999998431 12344667777776655 799999887755
Q ss_pred H
Q 025789 74 T 74 (248)
Q Consensus 74 ~ 74 (248)
.
T Consensus 88 ~ 88 (229)
T TIGR00035 88 K 88 (229)
T ss_pred H
Confidence 4
No 61
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=62.28 E-value=88 Score=27.99 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=60.0
Q ss_pred EEeccCCC-----------CCCHHHHHHHHHHHHHcCc----ccEEecc--CCcHHHHHHH---hccC------Ccceec
Q 025789 35 YYQHRVDT-----------SVSIEDTMGELKKLVEEGK----IKYIGLS--EASADTIRRA---HAVH------PITAVQ 88 (248)
Q Consensus 35 ~~lH~~~~-----------~~~~~~~~~~l~~l~~~G~----ir~iGvS--~~~~~~l~~~---~~~~------~~~~~q 88 (248)
+-||.|+. ..+++++++++.+..+... +-|+=+. |.+.++..++ ++.. +.-++-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 67999854 3567899999998875533 2333333 4455555544 4444 568899
Q ss_pred cccCCcccc----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 89 MEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 89 ~~~~~~~~~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
++||+.... +. ....+.++++||.+......|..+
T Consensus 312 Ip~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI 354 (371)
T PRK14461 312 IPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEI 354 (371)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcCh
Confidence 999997542 11 456677889999999998887543
No 62
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=62.08 E-value=26 Score=30.48 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=62.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcC
Q 025789 33 DLYYQHRVDTSVSIEDTMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELG 110 (248)
Q Consensus 33 Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~g 110 (248)
++.++-.|-. .+-++.+.++++...+. ..|=|.++...+..++....++++|+.....-.- ....+...|+.+|
T Consensus 199 ~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~g 274 (324)
T TIGR01928 199 QLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHG 274 (324)
T ss_pred CCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcC
Confidence 5555555432 23467788888876664 6677888999999999988899999876653321 1257899999999
Q ss_pred CcEEeeccccccc
Q 025789 111 IGIVAYSPLGRGF 123 (248)
Q Consensus 111 i~v~~~~~l~~G~ 123 (248)
+.++..+.+.+|+
T Consensus 275 i~~~~~~~~es~i 287 (324)
T TIGR01928 275 AKVWIGGMLETGI 287 (324)
T ss_pred CeEEEcceEcccH
Confidence 9999876665553
No 63
>PLN02363 phosphoribosylanthranilate isomerase
Probab=61.75 E-value=27 Score=29.46 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=45.7
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccC
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 92 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 92 (248)
..++|.||+=+++..........+.+-+.... .....+..+||- +.+++.+.++++...++++|+.-+
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~-l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~ 131 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLSVAKEISQV-AREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGN 131 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHHHHHHHHHh-ccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 34699999999754432233444444333333 322246679995 778999999999999999999653
No 64
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=61.65 E-value=25 Score=32.59 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=43.1
Q ss_pred HHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 22 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 22 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
+.-+|+.+.|+|.+- ..++++++..++.+++|+...||+-+.-.+.++++.+.
T Consensus 192 ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 192 RIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp HHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT
T ss_pred HHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc
Confidence 345678889999875 45899999999999999999999999988999998776
No 65
>PLN00191 enolase
Probab=61.55 E-value=93 Score=28.69 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEec-c-CCcHHHHHHHhccCCcceec
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL-S-EASADTIRRAHAVHPITAVQ 88 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-S-~~~~~~l~~~~~~~~~~~~q 88 (248)
.+++...+-+.+.+++ .++.+|-.|-.. +-++.+.++.+..+|.-+|= + ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666666655554433 357777776443 34677778888888877772 2 35689999999988888898
Q ss_pred cccCCcccc-chhchHHHHHHcCCcEEee
Q 025789 89 MEYSLWTRE-IEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~gi~v~~~ 116 (248)
+..|-.-.- ...++...|+.+|+.++.-
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 887754421 1266889999999999763
No 66
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=61.51 E-value=1.1e+02 Score=26.63 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCcccEEeccC---------CcHHHHHHHhc
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-SIEDTMGELKKLVEEGKIKYIGLSE---------ASADTIRRAHA 80 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvS~---------~~~~~l~~~~~ 80 (248)
.+.+.+.+.++..-...++ -+ +.|-.-++-. ....+.+.++.+++-|.+..+.+.+ .+.+.++.+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I--~~-VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~ 195 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEI--WE-VILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT 195 (321)
T ss_pred CCHHHHHHHHHHHHhCCCc--cE-EEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH
Confidence 3555666555543333332 23 3343333332 2456778888888888876555533 23344444444
Q ss_pred cCCcceeccccCCccc--cchhchHHHHHHcCCcEEeeccccccc
Q 025789 81 VHPITAVQMEYSLWTR--EIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 81 ~~~~~~~q~~~~~~~~--~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
......+.+..+-... ......+..+++.||.+...+++..|.
T Consensus 196 ~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 196 SGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred cCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 4422233334332111 111456788889999999999998775
No 67
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=60.81 E-value=84 Score=25.75 Aligned_cols=97 Identities=13% Similarity=0.289 Sum_probs=62.4
Q ss_pred HHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc------ccEEeccCCc-HHHHHHHhccCCcceec
Q 025789 16 VRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK------IKYIGLSEAS-ADTIRRAHAVHPITAVQ 88 (248)
Q Consensus 16 i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~------ir~iGvS~~~-~~~l~~~~~~~~~~~~q 88 (248)
...-++..-+--....|+-+++-..+......|-+...++|.+.|- .-|-|+++.+ .-+..+..+...|..+-
T Consensus 78 y~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIIt 157 (235)
T COG2949 78 YTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIIT 157 (235)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEe
Confidence 3444555555555556777777776666667777777777777775 3455666653 44455555556665554
Q ss_pred cccCCccccchhchHHHHHHcCCcEEeecc
Q 025789 89 MEYSLWTREIEDDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 118 (248)
-.||- +..+=.|+.+||.-+++..
T Consensus 158 Q~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 158 QRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred ccccc------HHHHHHHHHhCCceEEecC
Confidence 45553 4467789999999888654
No 68
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.77 E-value=39 Score=28.97 Aligned_cols=105 Identities=11% Similarity=0.059 Sum_probs=60.5
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCccee
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 87 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 87 (248)
+..++.+...+ +-+.|.++|+++|++-..+.|.......+.++.+..+.+...++..++. .+...++.+.+.. ++.+
T Consensus 20 ~~~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v 96 (287)
T PRK05692 20 KRFIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEV 96 (287)
T ss_pred CCCcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEE
Confidence 34567776665 5566999999999997444443221222334555555444445555554 4677888877652 2333
Q ss_pred ccccCCc--------cccc------hhchHHHHHHcCCcEEe
Q 025789 88 QMEYSLW--------TREI------EDDIIPLCRELGIGIVA 115 (248)
Q Consensus 88 q~~~~~~--------~~~~------~~~~~~~~~~~gi~v~~ 115 (248)
.+..+.- .... ....+.+++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3322221 1111 14688999999998764
No 69
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.54 E-value=44 Score=27.38 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhc---cCCcc
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA---VHPIT 85 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~ 85 (248)
..++.+...+ +-+.|.++|+++|++- .|.......+.++.+.+.... .+..+++......++.+.+ ...++
T Consensus 9 ~~~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~ 82 (237)
T PF00682_consen 9 VAFSTEEKLE-IAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGID 82 (237)
T ss_dssp TT--HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CCcCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCC
Confidence 3466666666 4456999999999988 332222233455555555555 4444555555666655433 23444
Q ss_pred eeccccCCcc--------------ccchhchHHHHHHcCCcE
Q 025789 86 AVQMEYSLWT--------------REIEDDIIPLCRELGIGI 113 (248)
Q Consensus 86 ~~q~~~~~~~--------------~~~~~~~~~~~~~~gi~v 113 (248)
.+.+..+.-+ .....+.+.++++.|+.+
T Consensus 83 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 83 IIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 4444333322 011256789999999998
No 70
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=60.36 E-value=9 Score=27.43 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=40.1
Q ss_pred cCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeecccccc
Q 025789 68 SEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 68 S~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
|.++...+.++++...++++|+.....-. .....+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 56788889999998888888887544321 1126789999999999999987 544
No 71
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=60.07 E-value=50 Score=31.61 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=48.9
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccCC
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYSL 93 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~ 93 (248)
...+|.||+=+++..........+.+...+.+......+..+||- |.+++.+.++.+...++++|+.-+.
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 356899999998666544445555523333333333357789995 7789999999999999999997543
No 72
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=59.50 E-value=1e+02 Score=25.65 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=34.9
Q ss_pred hchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCC
Q 025789 100 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCT 170 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s 170 (248)
...+++|+..|...+...|...|... . ..+......+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~--------~-----------~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT--------P-----------PNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC--------C-----------HHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 56789999999999877664333100 0 1223455667778889999998874
No 73
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=58.85 E-value=1.1e+02 Score=25.85 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEecc-CC------CCCCHHHHHHHHHHHHHcCcccEEeccCCc--------H-H
Q 025789 10 KGSPEYVRKCCEASLKRLDVDYIDLYYQHR-VD------TSVSIEDTMGELKKLVEEGKIKYIGLSEAS--------A-D 73 (248)
Q Consensus 10 ~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~-~~------~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~--------~-~ 73 (248)
+.++..+...+... ..+|++ +++.|-. +. ....+..+.+-++.+++..---+||+..++ . .
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~ 145 (272)
T TIGR00676 69 GATREEIREILREY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEE 145 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHH
Confidence 56677777777644 788865 3444433 22 112233455555555554223578877642 1 2
Q ss_pred HHHHHhcc----CCcceeccccCCccccchhchHHHHHHcCCcE
Q 025789 74 TIRRAHAV----HPITAVQMEYSLWTREIEDDIIPLCRELGIGI 113 (248)
Q Consensus 74 ~l~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v 113 (248)
+++.+.+. ..+-+.|.-|+.-. -.++++.|++.|+.+
T Consensus 146 ~~~~L~~K~~aGA~f~iTQ~~fd~~~---~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 146 DIENLKRKVDAGADYAITQLFFDNDD---YYRFVDRCRAAGIDV 186 (272)
T ss_pred HHHHHHHHHHcCCCeEeeccccCHHH---HHHHHHHHHHcCCCC
Confidence 33333222 34666677777511 256888999998765
No 74
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=58.75 E-value=1.4e+02 Score=26.89 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-----------hHcCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHHcCcc-cEEecc---CCcHH
Q 025789 14 EYVRKCCEASL-----------KRLDVDYIDLYYQHRVDTS-----VSIEDTMGELKKLVEEGKI-KYIGLS---EASAD 73 (248)
Q Consensus 14 ~~i~~~~e~SL-----------~rL~~d~iDl~~lH~~~~~-----~~~~~~~~~l~~l~~~G~i-r~iGvS---~~~~~ 73 (248)
+.+...+++-. +.+| +|++.||....+ .+.++..+..++..+.=.+ --|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 45665555544 5555 688888875332 3455677777776454333 233323 45788
Q ss_pred HHHHHhccCCc-ceeccccCCccccchhchHHHHHHcCCcEEeeccccccc
Q 025789 74 TIRRAHAVHPI-TAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 74 ~l~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.++++++...= .++-..-|.-+ + -..+...|+++|..+++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88887664211 11111222211 2 2678999999999999999887553
No 75
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=58.48 E-value=1e+02 Score=27.79 Aligned_cols=71 Identities=7% Similarity=-0.049 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeeccc
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~l 119 (248)
-++.+.+|++.-.+. ..|=|.++...+..+++..-++++|+.....-.- ....+.++|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 467777888876665 6677888999999999988889999876653321 1267889999999999987554
No 76
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=58.30 E-value=92 Score=27.29 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccc
Q 025789 50 MGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 50 ~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
++.+.+++++-.+ -+.|=|-++...+.+++.....+++|+....+-.- .+.+..|+.+||.++..+.+.+++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccHH
Confidence 4555556555333 34455667777888888777888888877764432 457778999999999887776553
No 77
>PRK15456 universal stress protein UspG; Provisional
Probab=56.38 E-value=75 Score=23.43 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=25.9
Q ss_pred ccccCCccccchhchHHHHHHcCCcEEeecccccc
Q 025789 88 QMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 88 q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
++...+....+...+.++++++++.++.++.-+.|
T Consensus 83 ~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred ceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC
Confidence 34444444445577999999999999999888765
No 78
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=56.16 E-value=1.2e+02 Score=28.23 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEeccCC------cHHHHHHHhccCC
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEA------SADTIRRAHAVHP 83 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~------~~~~l~~~~~~~~ 83 (248)
.+++.|.+.++...++.|+.++ .+...+.....+.+.+.++.+++.| .--.|++++- +.+.+ +++....
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell-~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADIL-HLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHH-HHHHHhC
Confidence 4889999999998888887653 3444333444566778888888887 3334554321 33333 3333333
Q ss_pred cceeccccCCccc--------cc----hhchHHHHHHcCCcEEee
Q 025789 84 ITAVQMEYSLWTR--------EI----EDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 84 ~~~~q~~~~~~~~--------~~----~~~~~~~~~~~gi~v~~~ 116 (248)
+..+++..--.+. .. ..+.+..|+++||.+.+.
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3333332222221 11 146788999999987553
No 79
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=55.79 E-value=60 Score=28.46 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeec
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~ 117 (248)
-++.+.++++...|. ..|=|.++...+.++++...++++|+.....-.- ....+..+|+.+|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 466777788877665 6677788899999999888889999876654321 12678999999999987754
No 80
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=54.87 E-value=37 Score=31.28 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=45.7
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccCC
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYSL 93 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~ 93 (248)
...+|.||+=+++..........+.+-+....+. ++.+||- |-+++.+.++++...++++|+.-+-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 4568999999875443333344444333333222 8889997 7789999999999999999997753
No 81
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=54.80 E-value=1.1e+02 Score=26.86 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeec
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~ 117 (248)
-++.+.+++++.-+. ..|=|.++...+..+++...++++|+.....-. .....+..+|+++|+.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 467777777775554 556677888898888887788899887654321 112678999999999998765
No 82
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=54.69 E-value=99 Score=26.69 Aligned_cols=73 Identities=12% Similarity=0.022 Sum_probs=49.6
Q ss_pred HHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeeccccccc
Q 025789 51 GELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 51 ~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
+.+..+++.-.+ -..|=|-++..++..+++....+++|+.....-.- ....+.+.|+.+|+.++..+.+.+|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 445555554322 34556677788888888877778888876653321 12678999999999999887776554
No 83
>PRK06424 transcription factor; Provisional
Probab=54.24 E-value=42 Score=25.67 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=40.1
Q ss_pred hchHHHHHHcCCcEEee---cccccc--cccccc--ccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHH
Q 025789 100 DDIIPLCRELGIGIVAY---SPLGRG--FFAGKA--VVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTP 172 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~---~~l~~G--~l~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 172 (248)
..+=+.|.+.|..+..+ +|...- .-+... ..........+.. ..+.+...+........+..+.++.|+|..
T Consensus 23 l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~ 101 (144)
T PRK06424 23 LNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMSQA 101 (144)
T ss_pred eehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 45678899999999988 555321 100000 0000000000000 111111112223344677888888999999
Q ss_pred HHHHHHHHh
Q 025789 173 QLALAWLLH 181 (248)
Q Consensus 173 q~al~~~l~ 181 (248)
++|-+--.+
T Consensus 102 eLA~~iGvs 110 (144)
T PRK06424 102 DLAAKIFER 110 (144)
T ss_pred HHHHHhCCC
Confidence 988664433
No 84
>PHA02128 hypothetical protein
Probab=54.22 E-value=33 Score=24.75 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc------------------CCcceecc---ccCCccccchhchHHH
Q 025789 47 EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV------------------HPITAVQM---EYSLWTREIEDDIIPL 105 (248)
Q Consensus 47 ~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~------------------~~~~~~q~---~~~~~~~~~~~~~~~~ 105 (248)
...+....++..+|-+|-|-+...+-.++...... +.+.+.++ +|.+..+....++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 45777888999999999999987766665544221 22333333 6777776655789999
Q ss_pred HHHcCCcEEee
Q 025789 106 CRELGIGIVAY 116 (248)
Q Consensus 106 ~~~~gi~v~~~ 116 (248)
+-.+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998765
No 85
>PRK14017 galactonate dehydratase; Provisional
Probab=53.87 E-value=1.1e+02 Score=27.35 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeeccc
Q 025789 50 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 50 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~~l 119 (248)
++.+.++++...+. ..|=|.++...+..+++..-++++|+..+..-. .....+.+.|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56777788776665 567778889999999888888999887665422 11267899999999999987553
No 86
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=52.88 E-value=25 Score=30.75 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.5
Q ss_pred hchHHHHHHcCCcEEeecccccc
Q 025789 100 DDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
.++.++|++.||.+++ ||+...
T Consensus 93 ~~Lke~a~~~Gi~~~S-SPfd~~ 114 (347)
T COG2089 93 AQLKEYARKRGIIFFS-SPFDLT 114 (347)
T ss_pred HHHHHHHHHcCeEEEe-cCCCHH
Confidence 6799999999999887 788653
No 87
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.53 E-value=25 Score=26.46 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.5
Q ss_pred cchhchHHHHHHcCCcEEeecccc
Q 025789 97 EIEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 97 ~~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
....++++.|++.||.|++|-.+.
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 334789999999999999988776
No 88
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=52.48 E-value=41 Score=29.78 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeecccccc
Q 025789 49 TMGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
-++.+.++++...+. ..|=|.++..++..++....++++|+.....-.- ....+...|+.+|+.++..+.+.+|
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 356666777776554 6677888888888888888888888866653221 1257889999999999876555444
No 89
>PRK10200 putative racemase; Provisional
Probab=50.71 E-value=73 Score=26.29 Aligned_cols=69 Identities=17% Similarity=0.052 Sum_probs=51.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC------------CCCHHHHHHHHHHHHHcCcccEEeccCCcH
Q 025789 5 VSIGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT------------SVSIEDTMGELKKLVEEGKIKYIGLSEASA 72 (248)
Q Consensus 5 ~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~------------~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 72 (248)
|+.++--+-+..++-++..-.+.+-++++.+.+|.++- +.+.....+.++.|.+.| +..|.+.+.++
T Consensus 8 GGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTa 86 (230)
T PRK10200 8 GGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTM 86 (230)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchH
Confidence 34566667777888888888889989999999999832 223455678888888887 68888887765
Q ss_pred HH
Q 025789 73 DT 74 (248)
Q Consensus 73 ~~ 74 (248)
..
T Consensus 87 h~ 88 (230)
T PRK10200 87 HK 88 (230)
T ss_pred HH
Confidence 44
No 90
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.71 E-value=93 Score=26.41 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCC--------CCCCHHHHHHHHHHHHHcCcccE-------EeccCCc-
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--------TSVSIEDTMGELKKLVEEGKIKY-------IGLSEAS- 71 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~--------~~~~~~~~~~~l~~l~~~G~ir~-------iGvS~~~- 71 (248)
+..++.+...+ +-..|.++|+++|++-. |. ......+.++.+.++...-++.. +|++.++
T Consensus 15 ~~~~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~ 90 (275)
T cd07937 15 ATRMRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPD 90 (275)
T ss_pred ceeccHHHHHH-HHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCc
Confidence 56778877776 48899999999999873 22 11222334444443332223322 2222222
Q ss_pred ---HHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEe
Q 025789 72 ---ADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 72 ---~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~ 115 (248)
...++.+.+. .++.+.+-...-+-....+.++.++++|+.+..
T Consensus 91 ~~~~~di~~~~~~-g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 91 DVVELFVEKAAKN-GIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHHHc-CCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 3334444332 345555544332322235678899999987654
No 91
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=50.67 E-value=3.3e+02 Score=28.73 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=54.5
Q ss_pred hHcCCCcccEEEeccCCC-CCCHHHHH-HHHHHHHHcCcc--cEEeccCCcHHHHHHHhccCCcceeccccCCcc--ccc
Q 025789 25 KRLDVDYIDLYYQHRVDT-SVSIEDTM-GELKKLVEEGKI--KYIGLSEASADTIRRAHAVHPITAVQMEYSLWT--REI 98 (248)
Q Consensus 25 ~rL~~d~iDl~~lH~~~~-~~~~~~~~-~~l~~l~~~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~--~~~ 98 (248)
.+-|-+.||+- ++. ..+.++.+ +.+..+...-.+ --|-+-+..++.++.+++..+=..+-+.-|... ...
T Consensus 394 ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~ 469 (1229)
T PRK09490 394 VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKF 469 (1229)
T ss_pred HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccH
Confidence 46788999995 332 23333334 333333322111 336777888999999988722122333444432 222
Q ss_pred hhchHHHHHHcCCcEEeecccccc
Q 025789 99 EDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 99 ~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
.++++.|+++|..++.+.--..|
T Consensus 470 -~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 470 -IEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred -HHHHHHHHHhCCCEEEEecCCCC
Confidence 46899999999999998644334
No 92
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.61 E-value=1.8e+02 Score=25.78 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCcce
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
+..++.+...+ +-+.|.++|+++|++- .|... +.-++.++.+.+.+. .+..+++....+.++.+.+.. ++.
T Consensus 17 ~~~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~ 88 (365)
T TIGR02660 17 GVAFTAAEKLA-IARALDEAGVDELEVG---IPAMG---EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDA 88 (365)
T ss_pred CCCCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC---HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCE
Confidence 45678877776 4455999999999885 33221 233566666666643 677777777788888877652 233
Q ss_pred eccccCCcc--------ccc------hhchHHHHHHcCCcEE
Q 025789 87 VQMEYSLWT--------REI------EDDIIPLCRELGIGIV 114 (248)
Q Consensus 87 ~q~~~~~~~--------~~~------~~~~~~~~~~~gi~v~ 114 (248)
+.+..+.-+ ... -.+.+.+++++|+.+.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 333322211 111 1367889999998754
No 93
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=50.37 E-value=90 Score=31.38 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHcCc
Q 025789 11 GSPEYVRKCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVSI---EDTMGELKKLVEEGK 61 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~ 61 (248)
..+..+.+.++..|+.+|+ ....+++|-.|....+. ..+|+...++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4566788888888887763 35678888888766553 479999999999999
Q ss_pred ccEEeccCCcHHHHHHHhccCC
Q 025789 62 IKYIGLSEASADTIRRAHAVHP 83 (248)
Q Consensus 62 ir~iGvS~~~~~~l~~~~~~~~ 83 (248)
++=+.+|+.++.+.++....
T Consensus 750 --aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred --EEEEEcCCHHHHHHHhhhhh
Confidence 99999999999999887643
No 94
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=50.32 E-value=58 Score=26.78 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.9
Q ss_pred ccCCccccchhchHHHHHHcCCcEEee
Q 025789 90 EYSLWTREIEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~gi~v~~~ 116 (248)
+||++|+....++.+..++.|+.++..
T Consensus 192 pY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 192 PYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 899999987788999999999998864
No 95
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.21 E-value=1.5e+02 Score=25.05 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCcce
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
+..++.+...+-++. |.++|++.|.+-. |... .+..++.+.+.+.++ .+..++...+.+.++.+.+.+ ++.
T Consensus 16 ~~~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~ 87 (262)
T cd07948 16 NAFFDTEDKIEIAKA-LDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDG 87 (262)
T ss_pred CCCCCHHHHHHHHHH-HHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCE
Confidence 456777777765554 9999998888873 4332 333444455554444 344555666778888887752 233
Q ss_pred eccccCC--------ccccc------hhchHHHHHHcCCcEEee
Q 025789 87 VQMEYSL--------WTREI------EDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 87 ~q~~~~~--------~~~~~------~~~~~~~~~~~gi~v~~~ 116 (248)
+-+.++. +.... ..+.+.+++++|+.+...
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3332221 11111 145668888999876553
No 96
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.50 E-value=1.9e+02 Score=25.72 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=57.5
Q ss_pred eccCCCC-----------CCHHHHHHHHHHHH-HcCc---ccEEeccCC--cHHHHHHH---hccCCcceeccccCCccc
Q 025789 37 QHRVDTS-----------VSIEDTMGELKKLV-EEGK---IKYIGLSEA--SADTIRRA---HAVHPITAVQMEYSLWTR 96 (248)
Q Consensus 37 lH~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvS~~--~~~~l~~~---~~~~~~~~~q~~~~~~~~ 96 (248)
||.++++ .+++++++++.+.. +.|+ |+|+=+.++ +.++++++ ++..+..++-++||.+..
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 8988653 34578889887555 4454 577766644 46665554 444556788889998763
Q ss_pred c----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 97 E----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 97 ~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
. +. ..+....+++|+.+......+..+
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI 340 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDI 340 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 1 11 335566778899999988877543
No 97
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.50 E-value=64 Score=24.70 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=43.7
Q ss_pred ccEEeccCCc--HHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeecccccccc
Q 025789 62 IKYIGLSEAS--ADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFF 124 (248)
Q Consensus 62 ir~iGvS~~~--~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l 124 (248)
+-.+|...|+ ...+..++....|+++- .-+.+.+ .+....+-+.++.++..|.+.++..
T Consensus 17 vak~GlDgHd~gakvia~~l~d~GfeVi~---~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 17 VAKLGLDGHDRGAKVIARALADAGFEVIN---LGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred EeccCccccccchHHHHHHHHhCCceEEe---cCCcCCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 3456888886 56688888888887653 3334443 6788888999999999999997753
No 98
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=49.49 E-value=1.3e+02 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.7
Q ss_pred hchHHHHHHcCCcEEee
Q 025789 100 DDIIPLCRELGIGIVAY 116 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~ 116 (248)
.+.+..++++|+.+.+.
T Consensus 166 ~~ai~~l~~~gi~v~~~ 182 (302)
T TIGR01212 166 VDAVKRARKRGIKVCSH 182 (302)
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 45677778888876553
No 99
>PTZ00081 enolase; Provisional
Probab=49.26 E-value=2.1e+02 Score=26.22 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEecc--CCcHHHHHHHhccCCcce
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLS--EASADTIRRAHAVHPITA 86 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 86 (248)
.+++.+.+-+.+.++.++ +++|-.|-.. +-|+.+.++.+.- .+.-+|=- ..++..+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 577777777777777654 6677766443 3456666666653 56555542 456999999999988899
Q ss_pred eccccCCcccc-chhchHHHHHHcCCcEEe
Q 025789 87 VQMEYSLWTRE-IEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 87 ~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~ 115 (248)
+|+..|-.-.- ...++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99988754421 125688999999999877
No 100
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=49.14 E-value=2.1e+02 Score=26.07 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEeccC-C-cHHHHHHHhccCCccee
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE-A-SADTIRRAHAVHPITAV 87 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~-~-~~~~l~~~~~~~~~~~~ 87 (248)
+++...+-+++.+++ .++++|-.|-.. +-++.+.++.+.- .+.-.|=-. . ++..+.++++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444544444444443 367777776433 2466666676664 555444332 2 58999999988888899
Q ss_pred ccccCCcccc-chhchHHHHHHcCCcEEe-ec
Q 025789 88 QMEYSLWTRE-IEDDIIPLCRELGIGIVA-YS 117 (248)
Q Consensus 88 q~~~~~~~~~-~~~~~~~~~~~~gi~v~~-~~ 117 (248)
|+..+-.-.- ...++...|+.+|+.++. +.
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~ 365 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVISHR 365 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 8887754321 125688999999998554 44
No 101
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=48.98 E-value=1.2e+02 Score=26.91 Aligned_cols=89 Identities=10% Similarity=0.195 Sum_probs=56.1
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEeccC--CcHHHHHH---HhccCCcceeccccCCc
Q 025789 35 YYQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLSE--ASADTIRR---AHAVHPITAVQMEYSLW 94 (248)
Q Consensus 35 ~~lH~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS~--~~~~~l~~---~~~~~~~~~~q~~~~~~ 94 (248)
+-||.++++ .+++++++++.++.+ .|+ |+++=+.+ .+.+++.+ +++..++.++-++||..
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668988642 246888888877654 342 45554443 33455444 45555567778899986
Q ss_pred ccc----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 95 TRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 95 ~~~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
... +. ..+.+..+++|+.+......+..+
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 531 11 335566778899999988887543
No 102
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.52 E-value=68 Score=28.17 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=58.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHc
Q 025789 32 IDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCREL 109 (248)
Q Consensus 32 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 109 (248)
.++.++-.|-. .+-++.+.++++.-. =-..|=|.++...+..+++...++++|+.....-.- ....+..+|+.+
T Consensus 203 ~~i~~iEeP~~----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~ 278 (354)
T cd03317 203 YGLLMIEQPLA----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEH 278 (354)
T ss_pred CCccEEECCCC----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHc
Confidence 35556655532 223556667766533 246677888999999999888889998876654321 126788999999
Q ss_pred CCcEEeecccccc
Q 025789 110 GIGIVAYSPLGRG 122 (248)
Q Consensus 110 gi~v~~~~~l~~G 122 (248)
|+.++..+...+|
T Consensus 279 gi~~~~g~~~es~ 291 (354)
T cd03317 279 GIPVWCGGMLESG 291 (354)
T ss_pred CCcEEecCcccch
Confidence 9999875544433
No 103
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=48.18 E-value=1.2e+02 Score=25.12 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=50.0
Q ss_pred cHHHHHHHhccCCcceecc----ccCCccccc---hhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCC
Q 025789 71 SADTIRRAHAVHPITAVQM----EYSLWTREI---EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHP 143 (248)
Q Consensus 71 ~~~~l~~~~~~~~~~~~q~----~~~~~~~~~---~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~ 143 (248)
+++++..+.+...+..+-+ +||.++... ..++.++++..|-.-+.+.|+..|-..+.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~---------------- 113 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT---------------- 113 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----------------
Confidence 4566666665544333322 566666432 26789999999999999999987632211
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhCC
Q 025789 144 RFSGENLEKNKLLYTRLETLAAKYGC 169 (248)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~ia~~~~~ 169 (248)
..........++.++.|-+++|+
T Consensus 114 ---~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ---AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ---ccchHHHHHHHHHhhHHHHHhCc
Confidence 11123445666778888888875
No 104
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=47.30 E-value=1.1e+02 Score=25.25 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHhHcCCC--------------------------cccEEEeccCCCCCCH---HHHHHHHHHHHHc
Q 025789 9 VKGSPEYVRKCCEASLKRLDVD--------------------------YIDLYYQHRVDTSVSI---EDTMGELKKLVEE 59 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d--------------------------~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~ 59 (248)
++.++..+++.+++--++|+++ -.+++.+..|....+. ...-+.+..++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 3456666777777777777743 2455566555544443 4567888888888
Q ss_pred CcccEEeccCCcHHHHHHHhcc
Q 025789 60 GKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 60 G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
|+ .+=+|+|..++++++++.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 87 688999999999998765
No 105
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=47.20 E-value=30 Score=22.28 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 025789 159 RLETLAAKYGCTTPQLALAWLLH 181 (248)
Q Consensus 159 ~l~~ia~~~~~s~~q~al~~~l~ 181 (248)
...+||.++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999854
No 106
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=47.13 E-value=96 Score=28.42 Aligned_cols=70 Identities=9% Similarity=0.142 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCccc-EEeccCCcHHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeeccc
Q 025789 50 MGELKKLVEEGKIK-YIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 50 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l 119 (248)
++.+.++++...|. ..|-|.++..++..+++..-++++|......--.....+.+.|+.+|+.+..++..
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~ 338 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNN 338 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 56666776665543 34666778888888888887888887753211111267889999999998877644
No 107
>PLN02489 homocysteine S-methyltransferase
Probab=46.97 E-value=2e+02 Score=25.25 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--cccEEeccC---------CcHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG--KIKYIGLSE---------ASADTI 75 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~---------~~~~~l 75 (248)
+..+.+.+.+.+.....++.|--.-+|++.+--. ..+.|+..+++.+++.+ +--.+.++. .+...+
T Consensus 156 y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~---~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~ 232 (335)
T PLN02489 156 YGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI---PNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLEC 232 (335)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc---CChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHH
Confidence 4444678999999888888875456999998543 34677777777777665 444455543 223333
Q ss_pred HHHhcc-CCcceeccccCCccccchhchHHHHHHc-CCcEEee
Q 025789 76 RRAHAV-HPITAVQMEYSLWTREIEDDIIPLCREL-GIGIVAY 116 (248)
Q Consensus 76 ~~~~~~-~~~~~~q~~~~~~~~~~~~~~~~~~~~~-gi~v~~~ 116 (248)
...+.. ..++++-+.+. ....-..++...+.. ++.+++|
T Consensus 233 ~~~~~~~~~~~~iGiNC~--~p~~~~~~l~~l~~~~~~pl~vy 273 (335)
T PLN02489 233 ASIADSCKKVVAVGINCT--PPRFIHGLILSIRKVTSKPIVVY 273 (335)
T ss_pred HHHHHhcCCceEEEecCC--CHHHHHHHHHHHHhhcCCcEEEE
Confidence 333322 34566666664 222124455545444 5666665
No 108
>smart00642 Aamy Alpha-amylase domain.
Probab=46.84 E-value=34 Score=26.67 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=17.9
Q ss_pred hchHHHHHHcCCcEEeeccccc
Q 025789 100 DDIIPLCRELGIGIVAYSPLGR 121 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~~ 121 (248)
..+++.|+++||.|+.=-++..
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 7789999999999997555543
No 109
>PF14502 HTH_41: Helix-turn-helix domain
Probab=46.67 E-value=19 Score=21.97 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCC--HHHHHHHHHHhCCCCc
Q 025789 158 TRLETLAAKYGCT--TPQLALAWLLHQGDDI 186 (248)
Q Consensus 158 ~~l~~ia~~~~~s--~~q~al~~~l~~~~v~ 186 (248)
+.+.+++++++++ ..|-||+++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 4789999999987 5899999999988743
No 110
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=46.66 E-value=17 Score=30.40 Aligned_cols=31 Identities=13% Similarity=0.428 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCceeecCCCChHhHHHhhccc
Q 025789 175 ALAWLLHQGDDIVPIPGTTKITNLDNNIGSL 205 (248)
Q Consensus 175 al~~~l~~~~v~~~i~G~~~~~~l~enl~a~ 205 (248)
.|+.+.+.+....+=.|+++.+++++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 4666666665557778999999999988877
No 111
>PRK15005 universal stress protein F; Provisional
Probab=46.66 E-value=85 Score=23.00 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=20.5
Q ss_pred CccccchhchHHHHHHcCCcEEeecccc
Q 025789 93 LWTREIEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
+....+...++.+++++++.++..+.-.
T Consensus 90 v~~G~p~~~I~~~a~~~~~DLIV~Gs~~ 117 (144)
T PRK15005 90 VEEGSPKDRILELAKKIPADMIIIASHR 117 (144)
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3344445779999999999988877653
No 112
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=46.23 E-value=1.2e+02 Score=28.58 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCC---HHHHHHHHHHHHHcCcccEEec
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS---IEDTMGELKKLVEEGKIKYIGL 67 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~---~~~~~~~l~~l~~~G~ir~iGv 67 (248)
+.+.+-|+..++..+-.+.+ -|..-.... +.++++-|-+++++|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 66777888888888877777 333222222 3456677888999999998854
No 113
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=45.84 E-value=3.8e+02 Score=28.12 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHH-HHHHHHHHcCcc--cEEeccCCcHHHHHHHhccCCcceec
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTM-GELKKLVEEGKI--KYIGLSEASADTIRRAHAVHPITAVQ 88 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~-~~l~~l~~~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q 88 (248)
+.+.+.+...+ ..+-|-+.||+-.= ....+.++.+ +.+..++..-.+ --|-+-++.++.++.+++..+=..+-
T Consensus 366 d~~~a~~~A~~-qve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQ-QVENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 33444443333 34778899999752 1222333333 444444433223 34677788999999998862212222
Q ss_pred cccCCc--cccchhchHHHHHHcCCcEEeecccccc
Q 025789 89 MEYSLW--TREIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 89 ~~~~~~--~~~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
+.-|.. +... .++++.|+++|..++.+.--..|
T Consensus 442 NsIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 442 NSISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred EeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 334443 2222 47899999999999998643334
No 114
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=45.29 E-value=29 Score=20.88 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC
Q 025789 160 LETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL 207 (248)
Q Consensus 160 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 207 (248)
+.+||+..|+|.+.+.- ++..+. -+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVSr--~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR--VLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHHH--HHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHHH--HHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 67899999999886544 455542 4455566677776666554
No 115
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=45.12 E-value=60 Score=22.10 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 025789 151 EKNKLLYTRLETLAAKYGCTTPQLALAWL 179 (248)
Q Consensus 151 ~~~~~~~~~l~~ia~~~~~s~~q~al~~~ 179 (248)
++..+.+.+|.++|++.|++.++++.-.+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56778889999999999999999876543
No 116
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=44.49 E-value=1.1e+02 Score=23.30 Aligned_cols=53 Identities=4% Similarity=0.139 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHhHcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 025789 7 IGVKGSPEYVRKCCEASLKRLD--VDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 59 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~--~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 59 (248)
.+.-..+..|++.+.++++... +...|++++.......+..++.+.|..+.++
T Consensus 56 vg~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 56 FGKAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred cccchhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3445677888888888888763 3468999999988777777777777666654
No 117
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.70 E-value=1.7e+02 Score=26.19 Aligned_cols=90 Identities=9% Similarity=0.133 Sum_probs=60.7
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCc---ccEEeccC--CcHHH---HHHHhccC---Ccceeccc
Q 025789 34 LYYQHRVDTS-----------VSIEDTMGELKKLVE-EGK---IKYIGLSE--ASADT---IRRAHAVH---PITAVQME 90 (248)
Q Consensus 34 l~~lH~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS~--~~~~~---l~~~~~~~---~~~~~q~~ 90 (248)
.+-||.++++ .+++++++++.+..+ .|+ |+|+=+.+ .+.++ +.++++.. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678888652 457889999888774 464 56666654 34444 44445444 56788999
Q ss_pred cCCcccc----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 91 YSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 91 ~~~~~~~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
||++... +. ....+..+++||.+......+..+
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
Confidence 9997541 11 456777889999999988887543
No 118
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=43.63 E-value=1.4e+02 Score=25.81 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=65.2
Q ss_pred CcccEEeccCCcHHHHHHHhcc---CCcceeccccCCcccc---chhchHHHHHHcCCcEEeeccccccccccccccCCC
Q 025789 60 GKIKYIGLSEASADTIRRAHAV---HPITAVQMEYSLWTRE---IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESL 133 (248)
Q Consensus 60 G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~---~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~ 133 (248)
.++..+.-.+++.+.+.++.+. ..+...-..+|-++.. -+..+.+++++.++-++.-+.-. .+
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S-----sN------ 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS-----SN------ 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC-----cc------
Confidence 5566666667777666655443 1111111112322221 13667888888887666522211 11
Q ss_pred CchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 134 PSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
-.+|.++|++.+. +..++-..|+.... ...+..|+|+|+.+.+.+
T Consensus 225 -----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 -----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 0388999998874 57888899997655 457889999999887654
No 119
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=43.26 E-value=2.2e+02 Score=24.66 Aligned_cols=143 Identities=22% Similarity=0.232 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcce
Q 025789 13 PEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV------SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 13 ~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~------~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
.+.+++.|.+-+++.|+|++ +.|.....+. ...+++++|++..+++.-. +--|.. ... .++. ....+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~v--Vvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~~aS~~--YA~-AAl~-~g~~f 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRV--VVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-ISASML--YAY-AALE-AGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCE--EEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-HHHHHH--HHH-HHHH-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCcE--EEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-CChHHH--HHH-HHHH-CCCCe
Confidence 46778899999999999854 4443332222 2335788888888876532 211111 111 1122 22222
Q ss_pred e-ccccCCccccchhchHHHHHHcCCcEEe---eccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHH
Q 025789 87 V-QMEYSLWTREIEDDIIPLCRELGIGIVA---YSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLET 162 (248)
Q Consensus 87 ~-q~~~~~~~~~~~~~~~~~~~~~gi~v~~---~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (248)
+ =++-+..+ ...+.++++++|+.+.+ .++++ ....-.+-.+.+
T Consensus 204 vN~tP~~~a~---~P~l~ela~~~gvpi~GdD~KT~lA------------------------------AplvlDLirl~~ 250 (295)
T PF07994_consen 204 VNGTPSNIAD---DPALVELAEEKGVPIAGDDGKTPLA------------------------------APLVLDLIRLAK 250 (295)
T ss_dssp EE-SSSTTTT---SHHHHHHHHHHTEEEEESSBS-HHH------------------------------HHHHHHHHHHHH
T ss_pred EeccCccccC---CHHHHHHHHHcCCCeecchHhhhhh------------------------------hHHHHHHHHHHH
Confidence 2 12222221 25789999999998875 22222 333444568889
Q ss_pred HHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhH
Q 025789 163 LAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNL 198 (248)
Q Consensus 163 ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l 198 (248)
+|.+.|..-.+-.++|.+-.|. +=.|......+
T Consensus 251 la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 251 LALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 9999999888889999999884 33555555444
No 120
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=42.58 E-value=59 Score=29.84 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=47.1
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-CCccee
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAV 87 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 87 (248)
-+||.+.|+|..- ..++|+++..++..++|+-..||+-+.-.+.++++++. ..+|++
T Consensus 204 ~~Rl~t~y~d~~a-------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDEIA-------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhhhc-------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 4688889988642 45899999999999999999999999999999999886 345544
No 121
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=42.53 E-value=1.8e+02 Score=25.28 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=58.1
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCcceeccccCCccccchhchHHHHHHcC
Q 025789 32 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELG 110 (248)
Q Consensus 32 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~g 110 (248)
.++.++-.|-+. +.++.+.++++.-.+ -..|=|-++...+..+++....+++|+.....-. -.++...|+.+|
T Consensus 192 ~~i~~iEqP~~~----~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPP----DQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCc----ccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 356666655432 235566666665433 4667778888888888888777888887665433 145778999999
Q ss_pred CcEEeeccccccc
Q 025789 111 IGIVAYSPLGRGF 123 (248)
Q Consensus 111 i~v~~~~~l~~G~ 123 (248)
|.++..+.+.+|+
T Consensus 266 i~~~~~~~~es~i 278 (320)
T PRK02714 266 LDAVFSSVFETAI 278 (320)
T ss_pred CCEEEEechhhHH
Confidence 9999876665543
No 122
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=42.42 E-value=99 Score=25.10 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEAS 71 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~ 71 (248)
..+.+.+++.++.+|.+ +.++ .+.....++..+.++.+..+| +..|-++..+
T Consensus 14 ~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 45777888888888864 3333 334445577778888888877 6666665443
No 123
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=42.15 E-value=1.2e+02 Score=25.37 Aligned_cols=91 Identities=18% Similarity=0.138 Sum_probs=53.6
Q ss_pred HHHHHhHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCcccEEeccCC-cHHHHHHHhccCCcceeccccCCcccc
Q 025789 20 CEASLKRLDVDYIDLYYQHRVDTSVSIE-DTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQMEYSLWTRE 97 (248)
Q Consensus 20 ~e~SL~rL~~d~iDl~~lH~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~~~~~~~ 97 (248)
+-+-|.++|. |.+.+|..+.+.... --++.+.++++.-.+.-|...+. +++++.++.....++.+.+---+....
T Consensus 160 ~~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 160 WAKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCC
Confidence 3344556664 566667654432111 12455566666656677766654 688888888877677665532222221
Q ss_pred c-hhchHHHHHHcCCcE
Q 025789 98 I-EDDIIPLCRELGIGI 113 (248)
Q Consensus 98 ~-~~~~~~~~~~~gi~v 113 (248)
. -.++...|+++|+.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 1 267889999999864
No 124
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=41.70 E-value=25 Score=28.21 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=41.5
Q ss_pred HHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccCC
Q 025789 22 ASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYSL 93 (248)
Q Consensus 22 ~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~~ 93 (248)
..+..+|.||+=+.+. +.....+ ..+.+.++.+.-.-+.+||- |.+++.+.+++....++++|+.-+-
T Consensus 13 ~~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 3567899999888643 4322111 23334444444444488886 5578889999988999999986654
No 125
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.14 E-value=3e+02 Score=25.58 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCcccEEeccC----CcHHHHHH----HhccCCcce---eccccCCccccchhchHHHHHHcCCcE
Q 025789 45 SIEDTMGELKKLVEEGKIKYIGLSE----ASADTIRR----AHAVHPITA---VQMEYSLWTREIEDDIIPLCRELGIGI 113 (248)
Q Consensus 45 ~~~~~~~~l~~l~~~G~ir~iGvS~----~~~~~l~~----~~~~~~~~~---~q~~~~~~~~~~~~~~~~~~~~~gi~v 113 (248)
+.+.+++.++.++++..++.+-++. .+...+.+ +.+..+... .+...+.+.+ ..+++...++.|+..
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~--d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR--DADILHLYRRAGLVH 300 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC--CHHHHHHHHHhCCcE
Confidence 4678899999998876677776652 23333333 333332221 2233333222 357899999999887
Q ss_pred Eeeccc
Q 025789 114 VAYSPL 119 (248)
Q Consensus 114 ~~~~~l 119 (248)
+..+.-
T Consensus 301 v~iGiE 306 (497)
T TIGR02026 301 ISLGTE 306 (497)
T ss_pred EEEccc
Confidence 766444
No 126
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.52 E-value=1.3e+02 Score=25.15 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeecccccc
Q 025789 49 TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
-++.+.++. .+.=-..|=|-++...+..+++...++++|+.....-. .....+...|+.+|+.++..+-+.++
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 345555555 33333556666777778888877778888887664321 11267889999999999887555443
No 127
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.51 E-value=1.8e+02 Score=25.56 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=55.3
Q ss_pred EEeccCCC-----------CCCHHHHHHHHHHHHHcCc---ccEEecc--CCcHHHHH---HHhccCCcceeccccCCcc
Q 025789 35 YYQHRVDT-----------SVSIEDTMGELKKLVEEGK---IKYIGLS--EASADTIR---RAHAVHPITAVQMEYSLWT 95 (248)
Q Consensus 35 ~~lH~~~~-----------~~~~~~~~~~l~~l~~~G~---ir~iGvS--~~~~~~l~---~~~~~~~~~~~q~~~~~~~ 95 (248)
+-||.+++ ..+.+++++++.++.+.|+ ++++=+. |.+.++++ ++++..+..++.++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 45777643 2357788999999887754 2444443 33455544 4455456678888999854
Q ss_pred ccc----h---hchHHHH--HHcCCcEEeeccccccc
Q 025789 96 REI----E---DDIIPLC--RELGIGIVAYSPLGRGF 123 (248)
Q Consensus 96 ~~~----~---~~~~~~~--~~~gi~v~~~~~l~~G~ 123 (248)
... . ....+.. +++|+.+......|...
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~di 324 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDE 324 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCCh
Confidence 321 1 3344555 35689888887776543
No 128
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=39.31 E-value=1.9e+02 Score=24.78 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=34.6
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 159 RLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 159 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
+|.++|.+.+. ++.++--.|+.... ...+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 88999998875 57888888998765 457889999999887654
No 129
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=39.29 E-value=84 Score=26.07 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CcccEEeccCC--cHHHHHHHhccCCcceecccc---CCccccchhchHHH
Q 025789 35 YYQHRVDTSVSIEDTMGELKKLVEE----GKIKYIGLSEA--SADTIRRAHAVHPITAVQMEY---SLWTREIEDDIIPL 105 (248)
Q Consensus 35 ~~lH~~~~~~~~~~~~~~l~~l~~~----G~ir~iGvS~~--~~~~l~~~~~~~~~~~~q~~~---~~~~~~~~~~~~~~ 105 (248)
+++..|-.....++.+++|.+|++. |---.|-.-.| +.+.+.+..+..-.+.+|+.- .-++.. -+.+-+
T Consensus 107 L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~nt--ieAvly 184 (248)
T PF07476_consen 107 LRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNT--IEAVLY 184 (248)
T ss_dssp EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHH--HHHHHH
T ss_pred eeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhH--HHHHHH
Confidence 4455554444566777777776654 43334444455 588899998888888999853 323332 456789
Q ss_pred HHHcCCcEEe
Q 025789 106 CRELGIGIVA 115 (248)
Q Consensus 106 ~~~~gi~v~~ 115 (248)
|+++|++...
T Consensus 185 Ck~~gvgaY~ 194 (248)
T PF07476_consen 185 CKEHGVGAYL 194 (248)
T ss_dssp HHHTT-EEEE
T ss_pred HHhcCCceee
Confidence 9999998754
No 130
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.90 E-value=2.6e+02 Score=24.74 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=57.2
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHc-Cc---ccEEeccC--CcHHHHH---HHhccCCcceeccccCCc
Q 025789 35 YYQHRVDTS-----------VSIEDTMGELKKLVEE-GK---IKYIGLSE--ASADTIR---RAHAVHPITAVQMEYSLW 94 (248)
Q Consensus 35 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS~--~~~~~l~---~~~~~~~~~~~q~~~~~~ 94 (248)
+-||.|+.+ .+++++++++.++.++ |+ ++|+=+.+ .+.++++ +++...+..++.++||..
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 678888542 4468899999977754 22 34555543 4445544 445545567888899974
Q ss_pred ccc---ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 95 TRE---IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 95 ~~~---~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
... +. .......+++|+.+......|..+
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di 331 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDI 331 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcCh
Confidence 321 11 445667788899999988887543
No 131
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.58 E-value=1.2e+02 Score=27.49 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc---CCcceeccccCCccccchhchHHHHHHcC--CcEEeeccccccc
Q 025789 49 TMGELKKLVEEGKIKYIGLSEASADTIRRAHAV---HPITAVQMEYSLWTREIEDDIIPLCRELG--IGIVAYSPLGRGF 123 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~g--i~v~~~~~l~~G~ 123 (248)
+++++.+..++++ ++...+++.+-..++. ..+|++-+...+ ..+.++.+++.+ ++++++ ++.+
T Consensus 123 iYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSR---GGs~ 190 (431)
T PRK13352 123 IYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSR---GGSF 190 (431)
T ss_pred HHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecC---CHHH
Confidence 5677777765554 7777888887666554 456666555554 345677777543 555553 2223
Q ss_pred cccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 124 FAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 124 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
+..- ... ...-....+.++.+.+|+++|+++.+ |..+.-...+.-++...|+.|.+
T Consensus 191 ~~~W-----------M~~-----n~~ENPlye~fD~lLeI~~~yDVtlS-------LGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 191 LAAW-----------MLH-----NNKENPLYEHFDYLLEILKEYDVTLS-------LGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred HHHH-----------HHH-----cCCcCchHHHHHHHHHHHHHhCeeee-------ccCCcCCCccccCCcHHHHHHHH
Confidence 3211 000 00001244566789999999998643 33333233444555666665543
No 132
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=38.51 E-value=38 Score=27.94 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHcCcccEEec----cCCcHHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeeccccc
Q 025789 46 IEDTMGELKKLVEEGKIKYIGL----SEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGR 121 (248)
Q Consensus 46 ~~~~~~~l~~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~ 121 (248)
.++..++|..++ +.+|.. |.+....++.+++...+.+ |.++=.....+++...-+.|..++.-+.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~----~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV----YAPLWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE----eecccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 344555565555 444433 4445556666666544332 3333322236677777778888777777777
Q ss_pred cccc---cccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHH
Q 025789 122 GFFA---GKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTP 172 (248)
Q Consensus 122 G~l~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~ 172 (248)
|+-. |+ .+ ..+..+.+..+++++|+.++
T Consensus 147 gL~~~~lGr----------------~i-------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 147 GLDESWLGR----------------RI-------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred CCChHHhCC----------------cc-------CHHHHHHHHHHHHhcCCCcc
Confidence 7531 11 01 12345688899999998764
No 133
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=37.87 E-value=3e+02 Score=24.80 Aligned_cols=120 Identities=14% Similarity=0.217 Sum_probs=65.7
Q ss_pred HHHHHcCcccEEeccCCcH----HHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcE---Eeecccccccccc
Q 025789 54 KKLVEEGKIKYIGLSEASA----DTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGI---VAYSPLGRGFFAG 126 (248)
Q Consensus 54 ~~l~~~G~ir~iGvS~~~~----~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v---~~~~~l~~G~l~g 126 (248)
.++.++-.||.+|+=+-+- .++.+.+...--+...+-+|+-+.. -=.|-++|..| |+++||. |+.=|
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA-----SicAiknGkSvDTSMGfTPLe-Gl~MG 237 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA-----SICAIKNGKSVDTSMGFTPLE-GLMMG 237 (396)
T ss_pred HHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch-----hhhhhhCCeeeccCCCCCccc-ceecc
Confidence 4566777899999976654 3344444433236666777775542 11233556554 5677887 44333
Q ss_pred ccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCC-hHhHHHhhcc
Q 025789 127 KAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTK-ITNLDNNIGS 204 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~-~~~l~enl~a 204 (248)
.+.. +.. | ..+.-+++..|+|+.|+.-- |.+..---=|.|.++ ...+.++.+-
T Consensus 238 TRsG-diD--------P--------------~ii~~l~~~~~~s~~~i~~~--LNkkSGllGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 238 TRSG-DID--------P--------------GIILYLMEQEGMSAEEIDTL--LNKKSGLLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred CCCC-CCC--------h--------------HHHHHHHHhcCCCHHHHHHH--HhhhccccccccccchHHHHHHHhcc
Confidence 2211 111 1 26778888899999886654 333321133445333 5555555543
No 134
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.75 E-value=1.2e+02 Score=27.72 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=54.4
Q ss_pred HhHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--------CCcceeccccCCc
Q 025789 24 LKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--------HPITAVQMEYSLW 94 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--------~~~~~~q~~~~~~ 94 (248)
.+.+|++|. ++..|-. .... .+-...+-+.|-+..+|..+.+++++++.+.. .||-++.+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss---~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIAS---AELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCC---HHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 456777664 3333322 1222 23344556789999999999999888765432 35666554 2332
Q ss_pred cccchhchHHHHHHcCCcEEeecc
Q 025789 95 TREIEDDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 95 ~~~~~~~~~~~~~~~gi~v~~~~~ 118 (248)
+...+.++++.+.++|+.++..+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 332246789999999999876654
No 135
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=37.63 E-value=96 Score=23.38 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccC
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 69 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 69 (248)
.+.+.+...+++..+. .-+.-.+=..|...+.+.+.+.|+.+++.| +..+|+.+
T Consensus 81 v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEG----KKDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhc----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4445555555544332 223333345577888999999999999999 45677755
No 136
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.61 E-value=44 Score=29.35 Aligned_cols=20 Identities=20% Similarity=0.625 Sum_probs=16.7
Q ss_pred hchHHHHHHcCCcEEeecccc
Q 025789 100 DDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~ 120 (248)
..+.++|++.||.+++ +|+.
T Consensus 79 ~~L~~~~~~~Gi~~~s-tpfd 98 (329)
T TIGR03569 79 RELKEYCESKGIEFLS-TPFD 98 (329)
T ss_pred HHHHHHHHHhCCcEEE-EeCC
Confidence 6789999999999987 5554
No 137
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=37.61 E-value=2.6e+02 Score=25.77 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcC-cccE---------EeccCCcHH
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS----VSIEDTMGELKKLVEEG-KIKY---------IGLSEASAD 73 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G-~ir~---------iGvS~~~~~ 73 (248)
...++.+.... +-+.|.++|++.|++. +..... ..-++.|+.++.+++.. .++. +|.+++.-+
T Consensus 20 ~~~~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pdd 96 (448)
T PRK12331 20 ATRMTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADD 96 (448)
T ss_pred CcccCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchh
Confidence 35677777776 4455899999999993 111000 01122466666666552 2332 456555433
Q ss_pred H----HHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEE
Q 025789 74 T----IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV 114 (248)
Q Consensus 74 ~----l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~ 114 (248)
. ++.+.+. .++.+.+..++-+...-...+++++++|+.+.
T Consensus 97 vv~~~v~~A~~~-Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~ 140 (448)
T PRK12331 97 VVESFVQKSVEN-GIDIIRIFDALNDVRNLETAVKATKKAGGHAQ 140 (448)
T ss_pred hHHHHHHHHHHC-CCCEEEEEEecCcHHHHHHHHHHHHHcCCeEE
Confidence 3 3444433 45666665444333223567899999997654
No 138
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=37.14 E-value=2.3e+02 Score=25.20 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHh-HcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHcCcccEEecc-------CCc
Q 025789 11 GSPEYVRKCCEASLK-RLDVDYIDLYYQHRVDT-----------SVSIEDTMGELKKLVEEGKIKYIGLS-------EAS 71 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~-rL~~d~iDl~~lH~~~~-----------~~~~~~~~~~l~~l~~~G~ir~iGvS-------~~~ 71 (248)
.|...+...|.+-.. .+++ .=-+-||.|+. ..+.++.+++.+...+... +.|-+- |.+
T Consensus 193 vSTsGi~~~I~~l~~~~~~v--~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~ 269 (349)
T COG0820 193 VSTSGIVPRIRKLADEQLGV--ALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDS 269 (349)
T ss_pred EecCCCchhHHHHHhhcCCe--EEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCC
Confidence 344555555555553 3322 12367899854 3456788888888776644 433221 333
Q ss_pred HH---HHHHHhccCCcceeccccCCccccc-h-------hchHHHHHHcCCcEEeeccccccc
Q 025789 72 AD---TIRRAHAVHPITAVQMEYSLWTREI-E-------DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 72 ~~---~l~~~~~~~~~~~~q~~~~~~~~~~-~-------~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.+ .|.+++...+..++.++||+..... + ....+...++||.+.....-+..+
T Consensus 270 ~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 270 LEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred HHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 44 4555566677789999999987532 1 345566667889988877776543
No 139
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.98 E-value=2.8e+02 Score=24.52 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHc-Cc---ccEEecc--CCcHHHHHHHhc---cCCcceeccccCCcccc-----ch---hchHHH
Q 025789 43 SVSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTIRRAHA---VHPITAVQMEYSLWTRE-----IE---DDIIPL 105 (248)
Q Consensus 43 ~~~~~~~~~~l~~l~~~-G~---ir~iGvS--~~~~~~l~~~~~---~~~~~~~q~~~~~~~~~-----~~---~~~~~~ 105 (248)
..+++++++++.+..+. |+ +-|+=+. |.+++++.++.+ ..++.++.++||+.... .. ..+.+.
T Consensus 222 ~~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~ 301 (344)
T PRK14464 222 RIAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARY 301 (344)
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHH
Confidence 34678888888877654 42 2333332 556666655544 45677888899986542 11 456677
Q ss_pred HHHcCCcEEeeccccccc
Q 025789 106 CRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 106 ~~~~gi~v~~~~~l~~G~ 123 (248)
.+++|+.+......|...
T Consensus 302 L~~~gi~~tiR~~~G~di 319 (344)
T PRK14464 302 LHRRGVLTKVRNSAGQDV 319 (344)
T ss_pred HHHCCceEEEECCCCCch
Confidence 788999999988887643
No 140
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=36.69 E-value=2.1e+02 Score=25.33 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCccc-EEeccCCc-HHHHHHHhccCCcceeccccCCccc-cchhchHHHHHHcCCcEEeec
Q 025789 50 MGELKKLVEEGKIK-YIGLSEAS-ADTIRRAHAVHPITAVQMEYSLWTR-EIEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 50 ~~~l~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~~~~~~-~~~~~~~~~~~~~gi~v~~~~ 117 (248)
++.+.+++++-.+. ..|=+-++ ..++.++++...++++|+..+..-. .....+...|+++|+.++.++
T Consensus 229 ~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 229 ISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 46666777765443 23445566 8888888888888899887765432 112678999999999997754
No 141
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=36.28 E-value=98 Score=27.85 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCC-----------------------CCH--HHHHHHHHHHHHcC-cccEEec
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTS-----------------------VSI--EDTMGELKKLVEEG-KIKYIGL 67 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~-----------------------~~~--~~~~~~l~~l~~~G-~ir~iGv 67 (248)
+.++++=++.-+-||.+--++++--.-.+. ... .-+++.++.|.++| .|.|+.|
T Consensus 44 ~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V 123 (386)
T COG1104 44 KAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC
Confidence 444555555556678877677776543210 001 23788888887888 7999999
Q ss_pred cCC---cHHHHHHHhcc-CCcceecc---ccCCccccchhchHHHHHHcCCcEEeecccccc
Q 025789 68 SEA---SADTIRRAHAV-HPITAVQM---EYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 68 S~~---~~~~l~~~~~~-~~~~~~q~---~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
-.. ++++++++++. ....++|. +...+.+ -.++-+.|+++|+-+..=...+-|
T Consensus 124 ~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp--I~ei~~i~k~~~i~fHvDAvQa~G 183 (386)
T COG1104 124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQP--IAEIGEICKERGILFHVDAVQAVG 183 (386)
T ss_pred CCCCeEcHHHHHHhcCCCceEEEEEecccCeeeccc--HHHHHHHHHHcCCeEEEehhhhcC
Confidence 865 57888888764 22333333 2222222 378899999998877655444444
No 142
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=36.23 E-value=2.7e+02 Score=23.72 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHc-CcccEEeccCCc--------
Q 025789 10 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT---------SVSIEDTMGELKKLVEE-GKIKYIGLSEAS-------- 71 (248)
Q Consensus 10 ~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~---------~~~~~~~~~~l~~l~~~-G~ir~iGvS~~~-------- 71 (248)
+.++..+...+.+. ..+|++ +++.|-...+ ...+..+.+.++.+++. |.--.||+..++
T Consensus 70 ~~~~~~l~~~L~~~-~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~ 146 (281)
T TIGR00677 70 NMPIEMIDDALERA-YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES 146 (281)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC
Confidence 45666666655554 788876 3444443211 11233456666666664 544689998763
Q ss_pred H-HHHHHHhcc----CCcceeccccCCccccchhchHHHHHHcCCcE
Q 025789 72 A-DTIRRAHAV----HPITAVQMEYSLWTREIEDDIIPLCRELGIGI 113 (248)
Q Consensus 72 ~-~~l~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v 113 (248)
. .++..+.+. ..+-+.|.-|+.-. -.++++.|++.|+.+
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~~~---~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQLFYDVDN---FLKFVNDCRAIGIDC 190 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccceecHHH---HHHHHHHHHHcCCCC
Confidence 1 123333222 34556666666511 256888899987764
No 143
>PRK11024 colicin uptake protein TolR; Provisional
Probab=35.90 E-value=96 Score=23.35 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 68 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 68 (248)
.+.+.+...+.+.++. .-|...+=..|.+.+.+.+++.|+.+++.| +..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEE
Confidence 3455555555544432 234444445688889999999999999998 4446654
No 144
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=35.58 E-value=1e+02 Score=23.45 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=36.1
Q ss_pred cccEEeccCCcHHHHHHHhccCCcceeccccC-CccccchhchHHHHHHcCCcE-Eeecccc
Q 025789 61 KIKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCRELGIGI-VAYSPLG 120 (248)
Q Consensus 61 ~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~gi~v-~~~~~l~ 120 (248)
+.--+.|...+.+.+..++....+|.+.+.+. -.........+..|.++|+.+ +.|+|+-
T Consensus 24 ~~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred CceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 45556666677788888888888888888774 222223367889999999987 4577775
No 145
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.52 E-value=2.3e+02 Score=23.01 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCC-cHHHHHHHhccCCcceeccc
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQME 90 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 90 (248)
+++...+ +-+.|-+-|+..+.+=+ +. .+.++.+++++++..=-.||..+- +.++++.+++.+- +++
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi--- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI--- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---
Confidence 3444443 55677788877666654 11 235666667776644467898876 7888888877632 222
Q ss_pred cCCccccchhchHHHHHHcCCcEEe
Q 025789 91 YSLWTREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~gi~v~~ 115 (248)
.++ ....++++.|+++|+.++.
T Consensus 85 vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECC---CCCHHHHHHHHHcCCcEEC
Confidence 122 2236899999999998887
No 146
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=35.43 E-value=1.7e+02 Score=25.08 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 158 TRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 158 ~~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
.+|.++|++.|. +..++-..|.-.... ..+..|+|+|+.+.+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHHHHHHH
Confidence 389999999884 578888899877654 57889999999887654
No 147
>PRK08392 hypothetical protein; Provisional
Probab=35.36 E-value=2.4e+02 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEec
Q 025789 29 VDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL 67 (248)
Q Consensus 29 ~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 67 (248)
.||+ +.-+|........++-.+.+.++.+.|.+.-+|=
T Consensus 86 ~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 123 (215)
T PRK08392 86 LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGH 123 (215)
T ss_pred CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeC
Confidence 4665 6677843222234566788888888887665553
No 148
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.28 E-value=1e+02 Score=21.05 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=36.5
Q ss_pred HHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEeccCC-cHHHHHHHhccCCcceecccc
Q 025789 23 SLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEA-SADTIRRAHAVHPITAVQMEY 91 (248)
Q Consensus 23 SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 91 (248)
.+..++....|++++-...+.....+++ +.+++.+ .++-|.+++. +.....++.+.+-.+++.-++
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~~~~~---~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDGLELL---EQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBHHHHH---HHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred HHHHhcccCceEEEEEeeeccccccccc---cccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 3334444457888887654444444444 4445554 7777777755 456666666554444444343
No 149
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=35.26 E-value=3.6e+02 Score=24.75 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCcccEEeccCCc---HHHHHHHhccCC
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSEAS---ADTIRRAHAVHP 83 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~~~---~~~l~~~~~~~~ 83 (248)
....+++.+.+.+++....++ .++.+-|-.+.+ -...+.+++.+..++++..=..+.+|+.. ++.++++.+..
T Consensus 57 ~~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g- 133 (442)
T TIGR01290 57 SELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG- 133 (442)
T ss_pred cccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC-
Confidence 356899999999988877652 345566655432 23345688899899988211246666543 66677776542
Q ss_pred cceeccccCCccccchh---------------------------chHHHHHHcCCcEEeeccccccc
Q 025789 84 ITAVQMEYSLWTREIED---------------------------DIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 84 ~~~~q~~~~~~~~~~~~---------------------------~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
++.+.+..+-.++.... +-+..+.+.|+.+....++-.|+
T Consensus 134 vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 134 VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 45666665554432111 22445667788877777776654
No 150
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.22 E-value=3.3e+02 Score=24.38 Aligned_cols=87 Identities=13% Similarity=0.275 Sum_probs=53.9
Q ss_pred eccCCCC-----------CCHHHHHHHHHHHHHcC-------cccEEeccCC--cHHHHHHH---hccCCcceeccccCC
Q 025789 37 QHRVDTS-----------VSIEDTMGELKKLVEEG-------KIKYIGLSEA--SADTIRRA---HAVHPITAVQMEYSL 93 (248)
Q Consensus 37 lH~~~~~-----------~~~~~~~~~l~~l~~~G-------~ir~iGvS~~--~~~~l~~~---~~~~~~~~~q~~~~~ 93 (248)
||.++++ .++++.++++.+..++- .|+++=+.++ +.+.++++ +...+.-++-++||.
T Consensus 222 Lha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~ 301 (372)
T PRK11194 222 LHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNP 301 (372)
T ss_pred ccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCC
Confidence 8987552 34567777766665432 2566666644 55665554 444455788889998
Q ss_pred cccc----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 94 WTRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 94 ~~~~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
+... +. ..+.+..+++|+.+.....-+..+
T Consensus 302 ~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di 339 (372)
T PRK11194 302 FPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDI 339 (372)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcc
Confidence 6531 11 345666778899998876665443
No 151
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.97 E-value=1.8e+02 Score=26.24 Aligned_cols=82 Identities=9% Similarity=0.074 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhc--cCCcceeccccCCccccch-hchHHHHHHcCCcEEeeccccc
Q 025789 45 SIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHA--VHPITAVQMEYSLWTREIE-DDIIPLCRELGIGIVAYSPLGR 121 (248)
Q Consensus 45 ~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~gi~v~~~~~l~~ 121 (248)
.+..+...++.+.++.-|....+...+...+.+++. ..+..++..+-|++.+-.. ..+...|+++|+-++.=.+++.
T Consensus 111 ~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 111 LYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred ccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 356788888888888888888777777656555543 5778888889999887543 6788999999988888888887
Q ss_pred ccccc
Q 025789 122 GFFAG 126 (248)
Q Consensus 122 G~l~g 126 (248)
+++..
T Consensus 191 P~~q~ 195 (396)
T COG0626 191 PVLQR 195 (396)
T ss_pred ccccC
Confidence 76653
No 152
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=34.91 E-value=25 Score=32.32 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=22.5
Q ss_pred HHHHHhCCCHHHHHHHHHHhCC-CCceeecC
Q 025789 162 TLAAKYGCTTPQLALAWLLHQG-DDIVPIPG 191 (248)
Q Consensus 162 ~ia~~~~~s~~q~al~~~l~~~-~v~~~i~G 191 (248)
.+|--||.|.+.-.|+|+++.. .-.+.++|
T Consensus 111 aVaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 111 AVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 3455689999999999999976 33466666
No 153
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.68 E-value=2.5e+02 Score=25.12 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHH-HHHcC---cccEEeccC--CcHHHHH---HHhccCCcceeccccCCccccc--------hhchHHHH
Q 025789 44 VSIEDTMGELKK-LVEEG---KIKYIGLSE--ASADTIR---RAHAVHPITAVQMEYSLWTREI--------EDDIIPLC 106 (248)
Q Consensus 44 ~~~~~~~~~l~~-l~~~G---~ir~iGvS~--~~~~~l~---~~~~~~~~~~~q~~~~~~~~~~--------~~~~~~~~ 106 (248)
.+++++++++.+ +.+.| +|+++=+.+ .+.+++. +++...+..+.-++||.+.... -..+.+..
T Consensus 259 ~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L 338 (368)
T PRK14456 259 YPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRL 338 (368)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHH
Confidence 467888888875 45556 355665553 4444444 4444455667788999876521 14567778
Q ss_pred HHcCCcEEeecccccc
Q 025789 107 RELGIGIVAYSPLGRG 122 (248)
Q Consensus 107 ~~~gi~v~~~~~l~~G 122 (248)
+++|+.+......+..
T Consensus 339 ~~~Gi~vtvR~~~G~d 354 (368)
T PRK14456 339 LDAGLQVTVRKSYGTT 354 (368)
T ss_pred HHCCCcEEeeCCCCcc
Confidence 8999999998888754
No 154
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=34.37 E-value=89 Score=24.74 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=36.3
Q ss_pred HHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCC
Q 025789 18 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA 70 (248)
Q Consensus 18 ~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~ 70 (248)
.+++++|..- .-++++++.......-.+-++.|..+..+|++|++-+.-+
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~ 116 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLF 116 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeE
Confidence 3455555554 3578888866555556778999999999999999866433
No 155
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.83 E-value=2.8e+02 Score=23.11 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-cccEEeccCCcHHHHHHHhccCCcce
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG-KIKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
+..++.+...+-+ +.|.++|+++|++-+ |.. -+.-++.++.+.+.+ .++..+.+..+.+.++.+.+.. ++.
T Consensus 14 ~~~~~~~~k~~i~-~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g-~~~ 85 (259)
T cd07939 14 GVAFSREEKLAIA-RALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG-VTA 85 (259)
T ss_pred CCCCCHHHHHHHH-HHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC-cCE
Confidence 4567777777655 459999999999953 221 122345566666643 4677777767778887776652 333
Q ss_pred eccccCCccc--------cc------hhchHHHHHHcCCcEE
Q 025789 87 VQMEYSLWTR--------EI------EDDIIPLCRELGIGIV 114 (248)
Q Consensus 87 ~q~~~~~~~~--------~~------~~~~~~~~~~~gi~v~ 114 (248)
+.+..+.-+. .. -...+..|+++|+.+.
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 4333222111 00 1457789999998654
No 156
>PRK15108 biotin synthase; Provisional
Probab=33.58 E-value=3.3e+02 Score=23.93 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCcccEEeccC--CcHHHHHHHhccC-----
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDT-SVSIEDTMGELKKLVEEGKIKYIGLSE--ASADTIRRAHAVH----- 82 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~----- 82 (248)
.+++.|.+.+.. ...+|+..+ .....+.++ ...++.+.+.++.+++.|. .+.+|+ .+.+.+.++.+.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 689999998765 567899887 333433232 3346677788888887664 333444 4667777664431
Q ss_pred -CcceeccccCCccc--cch--hchHHHHHHcCCcEEeecccccc
Q 025789 83 -PITAVQMEYSLWTR--EIE--DDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 83 -~~~~~q~~~~~~~~--~~~--~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
.+++.--.|.-+.. ..+ -+.+..+++.|+.+.+...+|-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 11221111221211 111 45677788888876554444433
No 157
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.53 E-value=3.1e+02 Score=24.32 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=57.5
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCc----ccEEecc--CCcHHHHHHH---hccCCcceeccccCCc
Q 025789 35 YYQHRVDTS-----------VSIEDTMGELKKLVEEGK----IKYIGLS--EASADTIRRA---HAVHPITAVQMEYSLW 94 (248)
Q Consensus 35 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~----ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~~~~ 94 (248)
+-||.++++ .+.++++++++.+.+.+. |+++=+. |.+.++++++ +...+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 557777542 345889999998877542 4556554 3344555444 4445556777899987
Q ss_pred ccc----c-h---hchHHHHHHcCCcEEeeccccccc
Q 025789 95 TRE----I-E---DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 95 ~~~----~-~---~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
... + . ..+.+.++++|+.+......+..+
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~di 339 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDI 339 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 632 1 1 345667889999999888776543
No 158
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=33.16 E-value=1.6e+02 Score=23.71 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=52.9
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccC-CccccchhchHHHHHHc
Q 025789 31 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYS-LWTREIEDDIIPLCREL 109 (248)
Q Consensus 31 ~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~ 109 (248)
-..+..+.+.. . -+....+++.|- ..+-++-.+.+.|.++++.....++-+... .-.......+++.|++.
T Consensus 22 ~~~V~~l~R~~----~---~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~a 93 (233)
T PF05368_consen 22 GFSVRALVRDP----S---SDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAA 93 (233)
T ss_dssp TGCEEEEESSS----H---HHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecc----c---hhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhcc
Confidence 45777777754 1 223445666776 456666668899999888655444433332 21122237799999999
Q ss_pred CCcEEeeccccccc
Q 025789 110 GIGIVAYSPLGRGF 123 (248)
Q Consensus 110 gi~v~~~~~l~~G~ 123 (248)
||..+.+|.++.+.
T Consensus 94 gVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 94 GVKHFVPSSFGADY 107 (233)
T ss_dssp T-SEEEESEESSGT
T ss_pred ccceEEEEEecccc
Confidence 99999999997653
No 159
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=32.76 E-value=1.2e+02 Score=25.26 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHH-HHHHHHcCcccEEeccCC-c-------HHHHHHHhccCCcceec
Q 025789 18 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGE-LKKLVEEGKIKYIGLSEA-S-------ADTIRRAHAVHPITAVQ 88 (248)
Q Consensus 18 ~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~-l~~l~~~G~ir~iGvS~~-~-------~~~l~~~~~~~~~~~~q 88 (248)
+.+++-|+-+| +|||++=+-|-......+++++. ++-+++.|---+.| .++ . .++..+.++...|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Confidence 45777888888 89999999987655444455544 44455667766777 211 1 11222233345677777
Q ss_pred cccCCccccch--hchHHHHHHcCCcEEe
Q 025789 89 MEYSLWTREIE--DDIIPLCRELGIGIVA 115 (248)
Q Consensus 89 ~~~~~~~~~~~--~~~~~~~~~~gi~v~~ 115 (248)
+.-..++-..+ ..++..++++|+.+.+
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 76555543322 4577888888877764
No 160
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.73 E-value=1.4e+02 Score=24.17 Aligned_cols=88 Identities=9% Similarity=0.143 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCC-cHHHHHHHhccCCcceeccc
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVHPITAVQME 90 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 90 (248)
+++...+ +-+.|-+-|+..+.+=+= ..+.++.+++++++..=-.||..+- +.++++++++.+- |+-
T Consensus 14 ~~~~a~~-ia~al~~gGi~~iEit~~--------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~Fi 80 (201)
T PRK06015 14 DVEHAVP-LARALAAGGLPAIEITLR--------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFI 80 (201)
T ss_pred CHHHHHH-HHHHHHHCCCCEEEEeCC--------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEE
Confidence 3444444 555677778776666541 1235566666666544466898775 7888888877632 111
Q ss_pred cCCccccchhchHHHHHHcCCcEEe
Q 025789 91 YSLWTREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~gi~v~~ 115 (248)
.++ ....+++++|+++||.++.
T Consensus 81 vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ECC---CCCHHHHHHHHHcCCCEeC
Confidence 222 2247899999999999987
No 161
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=32.61 E-value=2.4e+02 Score=22.74 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=56.0
Q ss_pred HHhHcCCCcccEEEec-cCCCC-CC----HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccCCccc
Q 025789 23 SLKRLDVDYIDLYYQH-RVDTS-VS----IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR 96 (248)
Q Consensus 23 SL~rL~~d~iDl~~lH-~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~ 96 (248)
.+..-|-|+||+=-=- +|... .. ++.+...++.+++..-=--+.+-++.++.++++++. ..+.+-.-.+.-.
T Consensus 27 ~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~- 104 (210)
T PF00809_consen 27 EQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA-GADIINDISGFED- 104 (210)
T ss_dssp HHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH-TSSEEEETTTTSS-
T ss_pred HHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc-CcceEEecccccc-
Confidence 3456788999986432 22221 12 233556666666511123677778999999999887 3333322222211
Q ss_pred cchhchHHHHHHcCCcEEeeccc
Q 025789 97 EIEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 97 ~~~~~~~~~~~~~gi~v~~~~~l 119 (248)
..++++.++++|..++.+..-
T Consensus 105 --~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 --DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp --STTHHHHHHHHTSEEEEESES
T ss_pred --cchhhhhhhcCCCEEEEEecc
Confidence 367999999999999987655
No 162
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=32.56 E-value=21 Score=25.27 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccC-------CCCCHHHHHHHHhhcC
Q 025789 154 KLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLA-------LKLKEEDLKEICKTIP 222 (248)
Q Consensus 154 ~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~-------~~Lt~~~~~~l~~~~~ 222 (248)
...++.+..+++..|+.+...... .+.+| -....+|.-+.+.+.+.+...+ -+||+.+...|++.+.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q-~~~~~-~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQ-KRRKP-DPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEe-cCCCC-CcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 345678888998888765421111 12233 3578999999999999886553 3799999999999885
No 163
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=32.46 E-value=95 Score=17.29 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHH
Q 025789 156 LYTRLETLAAKYGCTTPQLAL 176 (248)
Q Consensus 156 ~~~~l~~ia~~~~~s~~q~al 176 (248)
..+.+.++|++.|+|.+++.-
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 456899999999999887543
No 164
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=32.31 E-value=2.3e+02 Score=25.55 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-CCcceeccccCCccccc-hhchHHHHHHcCCcEEeecccccc
Q 025789 47 EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 47 ~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
..++..+..+.+.+.++.+-+...+.+.+++++.. .+..++..+-|+.-... -.++.++|+++|+-++.=...+.+
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 34455555555555566666655677888877643 34445555666644322 267889999999988875555544
No 165
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=32.26 E-value=47 Score=20.02 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCCHHHHHHHH
Q 025789 159 RLETLAAKYGCTTPQLALAW 178 (248)
Q Consensus 159 ~l~~ia~~~~~s~~q~al~~ 178 (248)
.+..+.++.|+|..++|-+-
T Consensus 6 ~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 55666667777777766553
No 166
>PRK08609 hypothetical protein; Provisional
Probab=32.24 E-value=4.4e+02 Score=25.05 Aligned_cols=16 Identities=13% Similarity=-0.245 Sum_probs=8.0
Q ss_pred HHHHHHHHHhCCCHHH
Q 025789 158 TRLETLAAKYGCTTPQ 173 (248)
Q Consensus 158 ~~l~~ia~~~~~s~~q 173 (248)
+.-..+|.+-|.++.+
T Consensus 537 ~~~v~~ar~~~~~~~~ 552 (570)
T PRK08609 537 KYGVATARKGWIQKDR 552 (570)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 3444555555555443
No 167
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.57 E-value=3.7e+02 Score=23.78 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHhHcC------CCcccEEEeccC-----------CCCCCHHHHHHHHHH-HHHcCc---ccEEeccCCc-----HHHH
Q 025789 22 ASLKRLD------VDYIDLYYQHRV-----------DTSVSIEDTMGELKK-LVEEGK---IKYIGLSEAS-----ADTI 75 (248)
Q Consensus 22 ~SL~rL~------~d~iDl~~lH~~-----------~~~~~~~~~~~~l~~-l~~~G~---ir~iGvS~~~-----~~~l 75 (248)
+.|...+ .+....+-||.+ ....+++++++++.+ +.+.|+ |+++=+.+++ ++.+
T Consensus 197 ~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~L 276 (345)
T PRK14457 197 PQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEEL 276 (345)
T ss_pred HHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHH
Q ss_pred HHHhccCCcceeccccCCccccch--------hchHHHHHHcCCcEEeeccccccc
Q 025789 76 RRAHAVHPITAVQMEYSLWTREIE--------DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 76 ~~~~~~~~~~~~q~~~~~~~~~~~--------~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.+++...+..++-++||++....- ..+.+..+++|+.+......+..+
T Consensus 277 a~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di 332 (345)
T PRK14457 277 ANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDA 332 (345)
T ss_pred HHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
No 168
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=31.51 E-value=2.9e+02 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.1
Q ss_pred hchHHHHHHcCCcEEeec
Q 025789 100 DDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~ 117 (248)
..+++.|+++|+.+.+|.
T Consensus 195 ~~~v~~~~~~Gl~v~vwT 212 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYT 212 (237)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 567788888888888874
No 169
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.48 E-value=3e+02 Score=22.78 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHhccCCcceeccccCC-------ccccchhchHHHHHHcCCcEEeecccccc
Q 025789 72 ADTIRRAHAVHPITAVQMEYSL-------WTREIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 72 ~~~l~~~~~~~~~~~~q~~~~~-------~~~~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
..+.-+.+....++.+++..+. +......++...++++||.+.++.+...+
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 3444444445566666653211 11111256788999999999988875543
No 170
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=31.06 E-value=1.4e+02 Score=21.47 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=33.1
Q ss_pred cCCcHHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeeccc
Q 025789 68 SEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 68 S~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l 119 (248)
+.-+.+.+..+....+++++-+--.--.+....++.+.++++||++-.+..-
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3445666666655434566655444333333467899999999999887554
No 171
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=30.94 E-value=38 Score=17.20 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=10.1
Q ss_pred CCCCHHHHHHHHhhc
Q 025789 207 LKLKEEDLKEICKTI 221 (248)
Q Consensus 207 ~~Lt~~~~~~l~~~~ 221 (248)
.+.++++.++|.+..
T Consensus 8 mPMSPddy~~l~~~V 22 (23)
T PF12162_consen 8 MPMSPDDYDELERMV 22 (23)
T ss_dssp --S-HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhh
Confidence 489999999998753
No 172
>PLN02540 methylenetetrahydrofolate reductase
Probab=30.87 E-value=4.8e+02 Score=24.90 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC---------CCHHHHHHHHHHHHHc-CcccEEeccCCcH------
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS---------VSIEDTMGELKKLVEE-GKIKYIGLSEASA------ 72 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~---------~~~~~~~~~l~~l~~~-G~ir~iGvS~~~~------ 72 (248)
.+.+++.+...+++. +.+|+. .++.|-...+. ..+..+.+-++..++. |....|||+.+..
T Consensus 68 rd~n~~~L~~~L~~a-~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~ 144 (565)
T PLN02540 68 TNMPVEKIDHALETI-KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVI 144 (565)
T ss_pred cCCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCccc
Confidence 355677777766665 888876 45555542211 1123355666666654 5567888886531
Q ss_pred ------------HHHHHHhcc----CCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccccccccCCCCch
Q 025789 73 ------------DTIRRAHAV----HPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSE 136 (248)
Q Consensus 73 ------------~~l~~~~~~----~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~ 136 (248)
.++..+.+. ..|-+.|.-|+.-. -...++.|++.||.+ |+--|+.-=. + .+
T Consensus 145 ~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~---f~~f~~~~r~~Gi~v----PIipGImPI~----S--~k 211 (565)
T PLN02540 145 GGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDI---FLKFVNDCRQIGITC----PIVPGIMPIN----N--YK 211 (565)
T ss_pred ccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHH---HHHHHHHHHhcCCCC----CEEeeecccC----C--HH
Confidence 233333222 44666677776511 256788899998543 2222332100 0 00
Q ss_pred hhhhcCCCCCch-hhHHHHHHHHHHH---HHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCC
Q 025789 137 SILAMHPRFSGE-NLEKNKLLYTRLE---TLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLAL 207 (248)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~~~~l~---~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~ 207 (248)
.+.+.. .+..- -.+...++++... +..++.|+..+.-.++=++..+.-..-+-.+...+-+.+.++.++.
T Consensus 212 ~l~r~~-~l~Gi~IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~~Gv~GiHfYTlN~e~~v~~ILe~lgl 285 (565)
T PLN02540 212 GFLRMT-GFCKTKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHLYTLNLEKSALAILMNLGL 285 (565)
T ss_pred HHHHHH-hccCCcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEECccCChHHHHHHHHHcCC
Confidence 000000 00000 0012222222211 1112345444444455556665555778888888888888877664
No 173
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=30.80 E-value=37 Score=27.06 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=35.5
Q ss_pred HHhHcCCCcc-------cEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccCCcc
Q 025789 23 SLKRLDVDYI-------DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWT 95 (248)
Q Consensus 23 SL~rL~~d~i-------Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~ 95 (248)
..+|+|.... .++++|...... ...+...+++++++.-=..|=+|+.++.-.+.+.+..+ +.++..|-++|
T Consensus 5 ~~eR~g~~~~~~~~~~~~~iWiHa~SvGE-~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-~~v~~~~~P~D 82 (186)
T PF04413_consen 5 LKERLGFYPPPPPRKPGPLIWIHAASVGE-VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-DRVDVQYLPLD 82 (186)
T ss_dssp HHHHHS--GGGGGGT--T-EEEE-SSHHH-HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-GG-SEEE---S
T ss_pred hHHhcCCCCCCCCCCCCCcEEEEECCHHH-HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-CCeEEEEeCcc
Confidence 3456665443 689999764221 22345566666666333355555543322222222211 13444555554
Q ss_pred ccc-----------------h----hchHHHHHHcCCcEEe
Q 025789 96 REI-----------------E----DDIIPLCRELGIGIVA 115 (248)
Q Consensus 96 ~~~-----------------~----~~~~~~~~~~gi~v~~ 115 (248)
... + ..++..|+++||.++.
T Consensus 83 ~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~L 123 (186)
T PF04413_consen 83 FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVL 123 (186)
T ss_dssp SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEE
T ss_pred CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEE
Confidence 310 1 5689999999999865
No 174
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=30.60 E-value=1.8e+02 Score=26.75 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=45.2
Q ss_pred HHHHHHHHcCcccEEeccCCcHHHHHHHhcc-------CC-cceeccccCCccccchhchHHHHHHcCCcEEeecc
Q 025789 51 GELKKLVEEGKIKYIGLSEASADTIRRAHAV-------HP-ITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 51 ~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-------~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 118 (248)
+....+-+.|-...+|..+.+++++++.+.. .+ |-++.+ .+.-+...+.++++.|.++++.++..+.
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEecc
Confidence 3344556789999999999999888776443 24 665553 2222222235688999999999886653
No 175
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=30.48 E-value=81 Score=27.15 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhHcCCCcc--cEEEeccCCCCCCHHHHHHHHHHHHHcCcccE
Q 025789 14 EYVRKCCEASLKRLDVDYI--DLYYQHRVDTSVSIEDTMGELKKLVEEGKIKY 64 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~i--Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~ 64 (248)
+...+.+.+.+++||+.+- ..+.-+.+ ...+.+.+.+++|.++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 4556678899999998642 23333322 235678999999999999754
No 176
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.40 E-value=99 Score=24.26 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHcCCCc----ccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 16 VRKCCEASLKRLDVDY----IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 16 i~~~~e~SL~rL~~d~----iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
.+..++..++++|++. ++.+.-.+ .......++.+.|+.|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 3566777777888752 11111111 11234567888999999988 45556777776666665543
No 177
>PLN02428 lipoic acid synthase
Probab=30.29 E-value=3.9e+02 Score=23.72 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHc--CcccE----EeccCCcHHHHHHHhc---cCCcceecc-cc---CC-------cccc-chhch
Q 025789 44 VSIEDTMGELKKLVEE--GKIKY----IGLSEASADTIRRAHA---VHPITAVQM-EY---SL-------WTRE-IEDDI 102 (248)
Q Consensus 44 ~~~~~~~~~l~~l~~~--G~ir~----iGvS~~~~~~l~~~~~---~~~~~~~q~-~~---~~-------~~~~-~~~~~ 102 (248)
...++.++.++.+++. |..-. +|+ +-+.+++.+.+. ...++++.+ +| +. +-.. ....+
T Consensus 228 ~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~ 306 (349)
T PLN02428 228 AGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFW 306 (349)
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHH
Confidence 3467889999999998 76532 355 455666555433 355555544 33 11 1111 11556
Q ss_pred HHHHHHcCCcEEeeccccc
Q 025789 103 IPLCRELGIGIVAYSPLGR 121 (248)
Q Consensus 103 ~~~~~~~gi~v~~~~~l~~ 121 (248)
-+.+.+.|...++-+||-+
T Consensus 307 ~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 307 REYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHHcCCceEEecCccc
Confidence 7777888888888888864
No 178
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=30.28 E-value=1.4e+02 Score=21.94 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHh
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAH 79 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 79 (248)
...+.+.+.|.+.+++.|++.+.+.-++-.|-..+....-..+.+..+++ | +.+-.++.++|....
T Consensus 8 crr~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l---~----~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 8 CRRGAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEEL---G----IPLRFFSAEELNAVE 73 (121)
T ss_dssp E-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHC---T----SEEEEE-HHHHHCHH
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHh---C----CCeEEECHHHHhcCC
Confidence 34567899999999999999999988888888887765544444433332 2 445556677776554
No 179
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.16 E-value=53 Score=32.00 Aligned_cols=81 Identities=19% Similarity=0.097 Sum_probs=50.9
Q ss_pred HHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccCCccccch-
Q 025789 21 EASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIE- 99 (248)
Q Consensus 21 e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~- 99 (248)
=.-|+.||+.+|-|+=+|....+. ++.+.|+.-+||-+...--.++-..... +. +..+-.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~----------~l~~~gl~n~WGYdP~~fFAp~~~Yss~-------p~-p~~~i~Ef 267 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEP----------HLDKSGLNNNWGYDPLNFFAPEGRYASN-------PE-PATRIKEF 267 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccc----------cccccccccccCCCcccccCCCccccCC-------CC-cchHHHHH
Confidence 467999999999999998875543 2228899999998755421111111111 11 1112112
Q ss_pred hchHHHHHHcCCcEEeeccc
Q 025789 100 DDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l 119 (248)
+.++..++++||+||-=.++
T Consensus 268 K~mV~~lHkaGI~VILDVVf 287 (697)
T COG1523 268 KDMVKALHKAGIEVILDVVF 287 (697)
T ss_pred HHHHHHHHHcCCEEEEEEec
Confidence 77899999999999854444
No 180
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=30.05 E-value=3.7e+02 Score=25.82 Aligned_cols=102 Identities=11% Similarity=0.070 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEE-----EeccCCCCCCHHHHHHHHHHHHHcCc-cc---------EEeccCCcH
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLY-----YQHRVDTSVSIEDTMGELKKLVEEGK-IK---------YIGLSEASA 72 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~-----~lH~~~~~~~~~~~~~~l~~l~~~G~-ir---------~iGvS~~~~ 72 (248)
...++.+.... +-..|.++|++.|+++ -.-.+.. -++-|+.|+.+++... ++ .+|.+++.-
T Consensus 21 ~tr~~~~d~l~-ia~~ld~~G~~siE~~GGatf~~~~~~~---~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypd 96 (593)
T PRK14040 21 ATRLRLDDMLP-IAAKLDKVGYWSLESWGGATFDACIRFL---GEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYAD 96 (593)
T ss_pred ccccCHHHHHH-HHHHHHHcCCCEEEecCCcchhhhcccc---CCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcH
Confidence 45777777776 6677888999999983 1000111 1233555666655433 33 377777655
Q ss_pred HHHHHHhcc---CCcceeccccCCccccchhchHHHHHHcCCcE
Q 025789 73 DTIRRAHAV---HPITAVQMEYSLWTREIEDDIIPLCRELGIGI 113 (248)
Q Consensus 73 ~~l~~~~~~---~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v 113 (248)
+.+...++. ..++++.+...+-+...-...+.+++++|..+
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHA 140 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeE
Confidence 544333222 34455555443333222256789999999853
No 181
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.97 E-value=2.3e+02 Score=25.04 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-cCc---ccEEeccCCc-HHHHHHHhc
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVE-EGK---IKYIGLSEAS-ADTIRRAHA 80 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~-~G~---ir~iGvS~~~-~~~l~~~~~ 80 (248)
....+.+.|..++....+..+++.| .+.-.-++-...++++++++.+.+ .|. .+.+.||+.. ...+.++..
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhh
Confidence 4568999999999887766665443 554433444456788999998886 565 4788887654 445555544
No 182
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.79 E-value=3.3e+02 Score=22.64 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=31.4
Q ss_pred hchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 025789 100 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC 169 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~ 169 (248)
...++.|++-|+.++...+.. ... ... .........+.+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~--~~~------~~~-----------~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYD--VYY------EEK-----------SEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcc--ccc------ccc-----------cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578899999999998752111 000 000 012334556677788888888887
No 183
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.65 E-value=1.3e+02 Score=26.54 Aligned_cols=67 Identities=9% Similarity=-0.027 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCcc-cEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEee
Q 025789 50 MGELKKLVEEGKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 50 ~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~ 116 (248)
++.+.++++.--| -..|=|.++..++..+++...++++|+..+..-.- ...++..+|+.+|+.++.+
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeeccc
Confidence 4556666665433 24455667888888888877788888766654321 1256889999999998643
No 184
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.65 E-value=3.3e+02 Score=24.05 Aligned_cols=89 Identities=11% Similarity=0.151 Sum_probs=57.4
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC----cccEEecc--CCcHHHHHHH---hccCCcceeccccCCc
Q 025789 35 YYQHRVDTS-----------VSIEDTMGELKKLVEEG----KIKYIGLS--EASADTIRRA---HAVHPITAVQMEYSLW 94 (248)
Q Consensus 35 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvS--~~~~~~l~~~---~~~~~~~~~q~~~~~~ 94 (248)
+-||.++++ .+++++++++.+....+ +++++=+. |.+.+++.++ +...+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 458877442 34577888887777654 23556555 3445555554 4445567778899987
Q ss_pred ccc----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 95 TRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 95 ~~~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
... +. ..+....+++||.+......+..+
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 327 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDI 327 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcch
Confidence 531 11 445677889999999998886543
No 185
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=29.53 E-value=1.4e+02 Score=24.47 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=18.5
Q ss_pred HHHHhCCCHHHHHHHHHHhCCCCceeecCC
Q 025789 163 LAAKYGCTTPQLALAWLLHQGDDIVPIPGT 192 (248)
Q Consensus 163 ia~~~~~s~~q~al~~~l~~~~v~~~i~G~ 192 (248)
+-.++|+|+.| |++|+...-. ..|+|.
T Consensus 169 lmy~~g~ta~e-aI~~lR~~Rp--G~V~gp 195 (225)
T KOG1720|consen 169 LMYEYGMTAGE-AIAWLRICRP--GAVIGP 195 (225)
T ss_pred HHHHhCCCHHH-HHHHHHhcCC--ccccCH
Confidence 34458999887 8999887654 445543
No 186
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=29.36 E-value=1.3e+02 Score=19.27 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCHHHHH
Q 025789 159 RLETLAAKYGCTTPQLA 175 (248)
Q Consensus 159 ~l~~ia~~~~~s~~q~a 175 (248)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999988764
No 187
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=29.22 E-value=3.7e+02 Score=23.15 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcCc----ccEEeccCCcHHHHHHHhc---cCCcceeccccCCcccc---------chhchHHHHHH
Q 025789 45 SIEDTMGELKKLVEEGK----IKYIGLSEASADTIRRAHA---VHPITAVQMEYSLWTRE---------IEDDIIPLCRE 108 (248)
Q Consensus 45 ~~~~~~~~l~~l~~~G~----ir~iGvS~~~~~~l~~~~~---~~~~~~~q~~~~~~~~~---------~~~~~~~~~~~ 108 (248)
.+++++++++.+++.|. |..+.+.+.+.+++.++++ ..++.+.-++|.++... ...++++..++
T Consensus 142 ~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~ 221 (331)
T PRK00164 142 RLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAE 221 (331)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHh
Confidence 46788888888888875 3344443444444444333 33444333444443221 01456677777
Q ss_pred cCCcEEe
Q 025789 109 LGIGIVA 115 (248)
Q Consensus 109 ~gi~v~~ 115 (248)
+|+.+..
T Consensus 222 ~~~~~~~ 228 (331)
T PRK00164 222 RGWTLQP 228 (331)
T ss_pred ccCcccc
Confidence 6655433
No 188
>PRK10997 yieM hypothetical protein; Provisional
Probab=29.16 E-value=1.8e+02 Score=27.10 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHcCCC---cccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc--CCcHHHHHHHh
Q 025789 15 YVRKCCEASLKRLDVD---YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS--EASADTIRRAH 79 (248)
Q Consensus 15 ~i~~~~e~SL~rL~~d---~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS--~~~~~~l~~~~ 79 (248)
.+..+++..++.++.. .-|+++|-........+++.+.+..+++++..|..|++ ++.-..+.++.
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~if 467 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIF 467 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhc
Confidence 3556666677777642 37889887765444467899999999998888887775 44333344443
No 189
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.85 E-value=4.1e+02 Score=23.52 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=60.0
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCcc
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPIT 85 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~ 85 (248)
.+..++.+...+ +-+.|.++|+++|.+-+ |.. .++-++.++.+.+.+. .+-.+++....+.++.+.+.. ++
T Consensus 15 ~~~~~s~~~k~~-ia~~L~~~Gv~~IEvG~---p~~---~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g-~~ 86 (363)
T TIGR02090 15 PGVSLTVEQKVE-IARKLDELGVDVIEAGF---PIA---SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCG-VD 86 (363)
T ss_pred CCCCCCHHHHHH-HHHHHHHcCCCEEEEeC---CCC---ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcC-cC
Confidence 356678887776 44559999999999743 322 1233566666666555 444555666778888876653 33
Q ss_pred eeccccCC--cc------cc------chhchHHHHHHcCCcEE
Q 025789 86 AVQMEYSL--WT------RE------IEDDIIPLCRELGIGIV 114 (248)
Q Consensus 86 ~~q~~~~~--~~------~~------~~~~~~~~~~~~gi~v~ 114 (248)
.+.+.... .. .. ...+.+.+|+++|+.+.
T Consensus 87 ~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 87 SIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 34442221 11 11 01467788999998764
No 190
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=28.71 E-value=3.4e+02 Score=23.28 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=60.4
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHH-----HHHHHHHHHcCcccEEeccCCcHH-------HHHHHhccCCcceecccc
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDT-----MGELKKLVEEGKIKYIGLSEASAD-------TIRRAHAVHPITAVQMEY 91 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~-----~~~l~~l~~~G~ir~iGvS~~~~~-------~l~~~~~~~~~~~~q~~~ 91 (248)
++-++-.++|+..+..+.......+. -+.+.+.+.+--=|++|+.+.++. ++++......|.-+|+
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l-- 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL-- 132 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe--
Confidence 67788888999888841111112222 256777887778899999887654 3444444444444444
Q ss_pred CCcccc------chhchHHHHHHcCCcEEeecccccc
Q 025789 92 SLWTRE------IEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 92 ~~~~~~------~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
+...+. ....+++.|+++|+.++.+.....+
T Consensus 133 ~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 133 HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 222221 1156899999999999886655433
No 191
>PRK02866 cyanate hydratase; Validated
Probab=28.65 E-value=2e+02 Score=22.12 Aligned_cols=50 Identities=14% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHhh
Q 025789 160 LETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICKT 220 (248)
Q Consensus 160 l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~~ 220 (248)
..+||++.|+|..-++-.+.-++.. ++++.+...+.+ .|+++....|...
T Consensus 21 w~~IA~~iG~S~v~vaaa~lGQ~~l---------s~e~A~kla~~L--gL~~~~~~~l~~~ 70 (147)
T PRK02866 21 WADIAEAIGLSEVWVTAALLGQMTL---------PAEEAEKVAELL--GLDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCCCC---------CHHHHHHHHHHh--CCCHHHHHHHhcC
Confidence 4566777777666555544444443 667777776665 5899888877653
No 192
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.43 E-value=1.8e+02 Score=26.00 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCcccEEeccCCc---HHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeeccccccccc
Q 025789 49 TMGELKKLVEEGKIKYIGLSEAS---ADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGFFA 125 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~ 125 (248)
-.+++.++.+.|.+.+|-.-.-. ...+.+.....+ . --|.......-..+++.|+++||.++.-+ +|. .
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p-~---~gY~~~~~~~L~~~L~~~~~~gIkvI~Na---Gg~-n 82 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDP-T---KGYAPDFVRDLRPLLPAAAEKGIKVITNA---GGL-N 82 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCC-C---CCchHHHHHHHHHHHHHHHhCCCCEEEeC---CCC-C
Confidence 34566666777777777553221 122221111111 1 12332222222678999999999998853 221 1
Q ss_pred cccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCC
Q 025789 126 GKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCT 170 (248)
Q Consensus 126 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s 170 (248)
+ ....+.+++++++.|.+
T Consensus 83 p---------------------------~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 83 P---------------------------AGCADIVREIARELGLS 100 (362)
T ss_pred H---------------------------HHHHHHHHHHHHhcCCC
Confidence 0 12456889999998876
No 193
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=28.42 E-value=1.4e+02 Score=27.51 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 68 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 68 (248)
..-+.+...+.+.++|+.||+++ |-++ ......+..-+.+++|+++|++ |...+
T Consensus 46 ~~Rs~~~~~~~I~e~L~wLGI~~-De~y----~QSer~~~y~~~~e~L~e~G~A-Y~C~C 99 (445)
T PRK12558 46 LERSKQEYADAIAEDLKWLGINW-DRTF----RQSDRFDRYDEAAEKLKAAGRL-YPCYE 99 (445)
T ss_pred cccchHHHHHHHHHHHHHcCCCC-Cccc----cHHHHHHHHHHHHHHHHHCCCE-EEecC
Confidence 34566889999999999999984 8432 1112234557888999999995 44443
No 194
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.25 E-value=4.2e+02 Score=23.46 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=58.9
Q ss_pred EEEeccCCC-----------CCCHHHHHHHHHHHHHcC--c--ccEEecc--CCcHHHHHH---HhccCCcceeccccCC
Q 025789 34 LYYQHRVDT-----------SVSIEDTMGELKKLVEEG--K--IKYIGLS--EASADTIRR---AHAVHPITAVQMEYSL 93 (248)
Q Consensus 34 l~~lH~~~~-----------~~~~~~~~~~l~~l~~~G--~--ir~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~~~ 93 (248)
.+-||.|+. ..+++++++++.+..+.. + +-|+=+. |.+.+++.+ ++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 477898744 245788999998866543 2 2344443 455555554 4555667788889997
Q ss_pred cccc----c-h---hchHHHHHHcCCcEEeeccccccc
Q 025789 94 WTRE----I-E---DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 94 ~~~~----~-~---~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.... + . .......+++|+.+......+..+
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI 327 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDI 327 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 5431 1 1 455677789999999988877543
No 195
>PRK08227 autoinducer 2 aldolase; Validated
Probab=28.21 E-value=2.6e+02 Score=23.73 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=42.7
Q ss_pred hchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCH-----HHH
Q 025789 100 DDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTT-----PQL 174 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~-----~q~ 174 (248)
..+.+.|+++||.++++.|-+... . + ....+.-..++|.++|... ..-
T Consensus 130 ~~v~~ea~~~G~Plla~~prG~~~-~---------~-----------------~~~~ia~aaRiaaELGADiVK~~y~~~ 182 (264)
T PRK08227 130 IQLVDAGLRYGMPVMAVTAVGKDM-V---------R-----------------DARYFSLATRIAAEMGAQIIKTYYVEE 182 (264)
T ss_pred HHHHHHHHHhCCcEEEEecCCCCc-C---------c-----------------hHHHHHHHHHHHHHHcCCEEecCCCHH
Confidence 456789999999999976664321 0 0 0114456677888887421 124
Q ss_pred HHHHHHhCCCCceeecCCCC
Q 025789 175 ALAWLLHQGDDIVPIPGTTK 194 (248)
Q Consensus 175 al~~~l~~~~v~~~i~G~~~ 194 (248)
.++.+..-..+.++|.|-.+
T Consensus 183 ~f~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 183 GFERITAGCPVPIVIAGGKK 202 (264)
T ss_pred HHHHHHHcCCCcEEEeCCCC
Confidence 56666666666677777665
No 196
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=28.20 E-value=1.6e+02 Score=26.71 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEeecccccc
Q 025789 49 TMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 49 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
.-+.+..|.+.|.--..|+.+-.-...+.+....-..+.+-+|+++......+.....++.++.+.+--|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 56788899999999999998876555555544444456677899988765567888899999999988888764
No 197
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=28.18 E-value=3.3e+02 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.7
Q ss_pred hchHHHHHHcCCcEEeec
Q 025789 100 DDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~ 117 (248)
...+-.|++.|+.+++++
T Consensus 151 ~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 151 ERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHHHcCCceEEEe
Confidence 445667899999988874
No 198
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=28.05 E-value=2.7e+02 Score=24.04 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=51.7
Q ss_pred hhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC------CHH
Q 025789 99 EDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC------TTP 172 (248)
Q Consensus 99 ~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~ 172 (248)
+..+.+++.+.++-++.-++-.+- ..+|.++|++.|. ++.
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~nSSN----------------------------------s~rL~eiA~~~g~~aylId~~~ 248 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSKNSSN----------------------------------SNRLAEIAKRHGKPAYLIDDAE 248 (294)
T ss_pred HHHHHHHhhcCCEEEEECCCCCcc----------------------------------HHHHHHHHHHhCCCeEEeCChH
Confidence 467888888888777764443321 1389999999987 467
Q ss_pred HHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 173 QLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 173 q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
++--.|+.... ...+-.|+|+|+.|-+++
T Consensus 249 ei~~~w~~~~~-~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 249 EIDPEWLKGVK-TVGVTAGASTPDWLVQEV 277 (294)
T ss_pred hCCHHHhcCcc-EEEEecCCCCCHHHHHHH
Confidence 88889998855 457788999999988766
No 199
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=27.87 E-value=1.4e+02 Score=22.15 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHH
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 78 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 78 (248)
...+.+++.|...+++.|+..|+..-++-.|..++....-..++++-+++ | +-+-.|+.++|+..
T Consensus 10 cr~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l---g----~pl~~~~~~eL~~~ 74 (126)
T PRK07027 10 CRRGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH---G----WPLRAFSAAQLAAS 74 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh---C----CCeEEeCHHHHHhc
Confidence 34567999999999999999999877777777776554433444443333 1 33344566776654
No 200
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=27.82 E-value=3.7e+02 Score=22.68 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-C---HHHHHHHHHHHHHcCcccEE
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSV-S---IEDTMGELKKLVEEGKIKYI 65 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~-~---~~~~~~~l~~l~~~G~ir~i 65 (248)
..+.+.+-+.+.++.++ +++..|=++..-... . +.+..+.++.+++.|+.-..
T Consensus 35 ~~~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~Vil 91 (261)
T TIGR02127 35 SAAGLQAFCLRIIDATA-EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLA 91 (261)
T ss_pred hHHHHHHHHHHHHHhcC-CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 34566666788888888 888888777653221 1 22344555666677754333
No 201
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.66 E-value=3e+02 Score=21.46 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=34.8
Q ss_pred CcccEEeccCCcHHHHHHHhccCCcceeccccCCccc--------cc-hhchHHHHHHcCCcEEeeccc
Q 025789 60 GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR--------EI-EDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 60 G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~--------~~-~~~~~~~~~~~gi~v~~~~~l 119 (248)
|.=..||+|.|+.++++++.+... |++ -++++.. .. -..+..+++...+.+++.+-+
T Consensus 93 ~~~~~ig~S~h~~~e~~~a~~~g~-dYv--~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI 158 (180)
T PF02581_consen 93 GPDKIIGASCHSLEEAREAEELGA-DYV--FLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI 158 (180)
T ss_dssp TTTSEEEEEESSHHHHHHHHHCTT-SEE--EEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS-
T ss_pred ccceEEEeecCcHHHHHHhhhcCC-CEE--EECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC
Confidence 455689999999999888764421 222 2222211 11 145667788888999886544
No 202
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=27.55 E-value=5.2e+02 Score=24.25 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC----------cccEEeccCCcHHHHHH
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEG----------KIKYIGLSEASADTIRR 77 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G----------~ir~iGvS~~~~~~l~~ 77 (248)
+..++.+.-.+ +-+.|.++|+|+|.+=+ |... .+..++++.+.+.+ ..+-.+++....+.++.
T Consensus 100 gv~fs~eeKi~-Ia~~L~~~GVd~IEvG~---Pa~s---~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~ 172 (503)
T PLN03228 100 GGSLTPPQKLE-IARQLAKLRVDIMEVGF---PGSS---EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEA 172 (503)
T ss_pred CCCCCHHHHHH-HHHHHHHcCCCEEEEeC---CCCC---HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHH
Confidence 45677777666 55669999999888844 4322 22233344444332 13344666666666666
Q ss_pred HhccC---Ccceec---------cccCCccccc-----hhchHHHHHHcCCcEEeecccc
Q 025789 78 AHAVH---PITAVQ---------MEYSLWTREI-----EDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 78 ~~~~~---~~~~~q---------~~~~~~~~~~-----~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
+.+.. ..+.+. .++++-.... ..+.+.+++++|+..+.+++-.
T Consensus 173 a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ED 232 (503)
T PLN03228 173 AWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCED 232 (503)
T ss_pred HHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccc
Confidence 65431 112222 2222211110 1567889999998655665543
No 203
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=27.52 E-value=4.3e+02 Score=23.34 Aligned_cols=94 Identities=15% Similarity=0.264 Sum_probs=57.9
Q ss_pred CcccEEE-eccCCC-----------CCCHHHHHHHHHHHHH-cCc---ccEEecc--CCcHHHHHHHhc---cC-----C
Q 025789 30 DYIDLYY-QHRVDT-----------SVSIEDTMGELKKLVE-EGK---IKYIGLS--EASADTIRRAHA---VH-----P 83 (248)
Q Consensus 30 d~iDl~~-lH~~~~-----------~~~~~~~~~~l~~l~~-~G~---ir~iGvS--~~~~~~l~~~~~---~~-----~ 83 (248)
.++|+.+ ||.+++ ..+++++++++.+..+ .|. |+++=+. |.+.+.++++.+ .. .
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~ 282 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHL 282 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCc
Confidence 3577754 777743 2346677777766665 343 4555444 344555555443 22 3
Q ss_pred cceeccccCCcccc------ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 84 ITAVQMEYSLWTRE------IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 84 ~~~~q~~~~~~~~~------~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
..+.-++||.+... +. ..+.+..+++|+.+......+..+
T Consensus 283 ~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di 332 (347)
T PRK14453 283 YHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSDI 332 (347)
T ss_pred ceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCch
Confidence 45778899987432 11 456677888999999888877543
No 204
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=27.44 E-value=43 Score=23.53 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=36.8
Q ss_pred HHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccC
Q 025789 17 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSE 69 (248)
Q Consensus 17 ~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 69 (248)
.-.|-.-|.+.|.||.=.+--.. ..+.+++.+.+++|.+.|+|..+.-+.
T Consensus 9 ~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 9 DLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 33455667777887765444332 567899999999999999999887553
No 205
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.93 E-value=1.3e+02 Score=25.24 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=52.3
Q ss_pred HHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHH-HHHHHHHHcCcccEEeccCC-------cHHHHHHHhccCCcceec
Q 025789 17 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTM-GELKKLVEEGKIKYIGLSEA-------SADTIRRAHAVHPITAVQ 88 (248)
Q Consensus 17 ~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvS~~-------~~~~l~~~~~~~~~~~~q 88 (248)
...+++-|+-.| +|||++=+-|-......++++ +.++-+++.|---+.|=.-+ ..+++.+.++...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 356777888888 899999999876544344444 44444455555555554322 233344444556677777
Q ss_pred cccCCccccch--hchHHHHHHcCCcEEe
Q 025789 89 MEYSLWTREIE--DDIIPLCRELGIGIVA 115 (248)
Q Consensus 89 ~~~~~~~~~~~--~~~~~~~~~~gi~v~~ 115 (248)
+.=..++-..+ ..++..+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76555443322 4567777777777655
No 206
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.92 E-value=3.8e+02 Score=22.42 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=65.4
Q ss_pred EEEeccCCCCCCHH---HHHHH-----HHHHHHcCcccEEeccCCc---HHHHHHHhcc-------CCc-ceeccccCCc
Q 025789 34 LYYQHRVDTSVSIE---DTMGE-----LKKLVEEGKIKYIGLSEAS---ADTIRRAHAV-------HPI-TAVQMEYSLW 94 (248)
Q Consensus 34 l~~lH~~~~~~~~~---~~~~~-----l~~l~~~G~ir~iGvS~~~---~~~l~~~~~~-------~~~-~~~q~~~~~~ 94 (248)
+=.-|+|-+....+ +.|+. ..+..+.|.-.++++.-|+ +..+..++.. ..+ .+=.+.++..
T Consensus 29 it~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~ 108 (254)
T COG1099 29 ITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEA 108 (254)
T ss_pred hhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccC
Confidence 44678887654433 33333 3455688888888887664 2223333221 122 1223344443
Q ss_pred ccc---chhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCH
Q 025789 95 TRE---IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTT 171 (248)
Q Consensus 95 ~~~---~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~ 171 (248)
... ...+-+.+|++.++.++.+.|-.+- .+...++.+++.+.|..+
T Consensus 109 t~~E~evf~~QL~LA~e~dvPviVHTPr~nK-------------------------------~e~t~~ildi~~~~~l~~ 157 (254)
T COG1099 109 TDEEKEVFREQLELARELDVPVIVHTPRRNK-------------------------------KEATSKILDILIESGLKP 157 (254)
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEEeCCCCcc-------------------------------hhHHHHHHHHHHHcCCCh
Confidence 321 1156689999999999999887531 122347778888888887
Q ss_pred HHHHH
Q 025789 172 PQLAL 176 (248)
Q Consensus 172 ~q~al 176 (248)
.++.+
T Consensus 158 ~lvvI 162 (254)
T COG1099 158 SLVVI 162 (254)
T ss_pred hheeh
Confidence 76553
No 207
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=26.67 E-value=99 Score=26.78 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI 62 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i 62 (248)
+...+.+.+.+++||++ .|.+.-. ......+.+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 45667789999999996 5754321 1111245678999999999998
No 208
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=26.49 E-value=1.3e+02 Score=23.96 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=24.9
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHH
Q 025789 31 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTI 75 (248)
Q Consensus 31 ~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 75 (248)
.+|.+|||..++ . +.++.+.+......++.+|++++....+
T Consensus 73 ~~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 368899998642 2 2333333333346788899998765443
No 209
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=26.40 E-value=36 Score=23.40 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEE
Q 025789 28 DVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI 65 (248)
Q Consensus 28 ~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~i 65 (248)
|.|-+| +++.....-...+|++..-..|.+.|.|+++
T Consensus 32 GsdlVd-WL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV 68 (84)
T cd04438 32 GSDLVD-WLLSHVEGLTDRREARKYASSLLKLGYIRHT 68 (84)
T ss_pred chHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCcEEec
Confidence 445555 3333332233567899999999999999886
No 210
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=26.18 E-value=3.2e+02 Score=24.28 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHhHcCCC
Q 025789 9 VKGSPEYVRKCCEASLKRLDVD 30 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d 30 (248)
...+.+.+++-+++-|.+.|++
T Consensus 4 m~~~~e~L~~~~~~vl~~~G~~ 25 (349)
T COG2055 4 MKVSAEELKALIEEVLRKAGVP 25 (349)
T ss_pred eEecHHHHHHHHHHHHHHcCCC
Confidence 4578999999999999999975
No 211
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=26.17 E-value=2e+02 Score=24.57 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=38.5
Q ss_pred ccEEEeccCCCCCCH---HHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 32 IDLYYQHRVDTSVSI---EDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 32 iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
.++++|-.|....+. .++++.+.++.++|. +.|=+|+|..+.++.+++.
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCDR 206 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCCE
Confidence 466777777655443 578999999999997 7888999999999888653
No 212
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.11 E-value=1.4e+02 Score=24.09 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=46.3
Q ss_pred HHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCC-cHHHHHHHhccC-CcceeccccCCcccc
Q 025789 20 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEA-SADTIRRAHAVH-PITAVQMEYSLWTRE 97 (248)
Q Consensus 20 ~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~-~~~~~q~~~~~~~~~ 97 (248)
+-+.|-+-|+..+.+=+ -. .+.++.++.++++-.=-.+|+.+- +.++++++++.+ .|-+ + +.
T Consensus 25 ~~~al~~gGi~~iEiT~---~t-----~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv-----S---P~ 88 (196)
T PF01081_consen 25 IAEALIEGGIRAIEITL---RT-----PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV-----S---PG 88 (196)
T ss_dssp HHHHHHHTT--EEEEET---TS-----TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE-----E---SS
T ss_pred HHHHHHHCCCCEEEEec---CC-----ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE-----C---CC
Confidence 45566666766555443 11 123444444444423356898875 788888887763 2221 1 22
Q ss_pred chhchHHHHHHcCCcEEe
Q 025789 98 IEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 98 ~~~~~~~~~~~~gi~v~~ 115 (248)
...+++++|+++|+.++.
T Consensus 89 ~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --HHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHcCCcccC
Confidence 247899999999999987
No 213
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=25.75 E-value=86 Score=20.61 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Q 025789 156 LYTRLETLAAKYGCTTPQLALAWLLHQ 182 (248)
Q Consensus 156 ~~~~l~~ia~~~~~s~~q~al~~~l~~ 182 (248)
-++.|.+||++.|+|..+++-..-...
T Consensus 22 FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 22 FWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 356899999999999998877654433
No 214
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=25.71 E-value=4e+02 Score=22.67 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEecc---------------------CCc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLS---------------------EAS 71 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS---------------------~~~ 71 (248)
+.+...+++.-.+-+--.|=.+.+-+|+ .+.+.+.+..|.+.|- +-.+|+- +++
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP~----~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDPD----LETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCC----HHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Q ss_pred HHHHHHHhccCC------cceeccccCCccccchhchHHHHHHcCC
Q 025789 72 ADTIRRAHAVHP------ITAVQMEYSLWTREIEDDIIPLCRELGI 111 (248)
Q Consensus 72 ~~~l~~~~~~~~------~~~~q~~~~~~~~~~~~~~~~~~~~~gi 111 (248)
.+..-++++... +-+++.-||++.+...+..+..|++.|+
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv 123 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV 123 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC
No 215
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=25.63 E-value=1e+02 Score=27.00 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHcCC--CcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 025789 15 YVRKCCEASLKRLDV--DYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 63 (248)
Q Consensus 15 ~i~~~~e~SL~rL~~--d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir 63 (248)
...+.+.+.+++||+ |+-..+.-+. ....+.+.+.+.+|.++|.|=
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~---~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMD---PEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCC---HHHHHHHHHHHHHHHHCCCEe
Confidence 345667889999998 5433333322 233567899999999999973
No 216
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=25.54 E-value=4e+02 Score=22.39 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=41.9
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEE--eccCCcHHHHHHHhccCCcceecc----ccCCccccchhchHH
Q 025789 31 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYI--GLSEASADTIRRAHAVHPITAVQM----EYSLWTREIEDDIIP 104 (248)
Q Consensus 31 ~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~i--GvS~~~~~~l~~~~~~~~~~~~q~----~~~~~~~~~~~~~~~ 104 (248)
--|+.=||.-|+.. +.-+++.|++|.+.|.=-.+ |||.+......--.+..-+.+.|. +.+--...++.+.+.
T Consensus 75 Gk~VvRLhSGDpsi-YgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~ 153 (254)
T COG2875 75 GKDVVRLHSGDPSI-YGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLA 153 (254)
T ss_pred CCeEEEeecCChhH-HHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHH
Confidence 34677777755432 44566667777777654443 665554332211122222222222 233222223456666
Q ss_pred HHHHcCCcEEee
Q 025789 105 LCRELGIGIVAY 116 (248)
Q Consensus 105 ~~~~~gi~v~~~ 116 (248)
...++|..+..|
T Consensus 154 ~la~~~aTm~I~ 165 (254)
T COG2875 154 ALAKHGATMVIF 165 (254)
T ss_pred HHHhcCceeEee
Confidence 666677666554
No 217
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=25.35 E-value=1.9e+02 Score=24.63 Aligned_cols=123 Identities=21% Similarity=0.156 Sum_probs=60.0
Q ss_pred cccCCccccchhchHHHHHHcCCcEEe-eccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHH--
Q 025789 89 MEYSLWTREIEDDIIPLCRELGIGIVA-YSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAA-- 165 (248)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~gi~v~~-~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~-- 165 (248)
+-|.+.++.....+...|+.+||.++- ++|+-+. +.......+... |...+...+....+++++..--+
T Consensus 62 V~~Tlv~~elr~~l~~~~~~~~i~~vdll~p~i~~-le~~lg~~p~~~-------pG~~~~ld~~Yf~RIeAiefal~hD 133 (269)
T PRK05339 62 VFYTLVDPELREILEERCAEFGIPCIDILGPLIAP-LEQELGLKPTPE-------PGRTHGLDEEYFKRIEAIEFALAHD 133 (269)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEeccHHHHHH-HHHHHCcCCCCC-------CCcccCCcHHHHHHHHHHHHHHHcC
Confidence 456666766545566999999998875 6666532 222100001111 11111112333444444442221
Q ss_pred -------------------HhCCCHHHHHHHHHHhCCCC-ceeecCCCChHhHHHhhc--ccCCCCCHHHHHHHHhh
Q 025789 166 -------------------KYGCTTPQLALAWLLHQGDD-IVPIPGTTKITNLDNNIG--SLALKLKEEDLKEICKT 220 (248)
Q Consensus 166 -------------------~~~~s~~q~al~~~l~~~~v-~~~i~G~~~~~~l~enl~--a~~~~Lt~~~~~~l~~~ 220 (248)
+.|.||..+-|+. ..-... .-.+++..=|+.|.+.-. .+++.++++.+.+|++-
T Consensus 134 DG~~~~~l~~ADIiLvGVSRtsKTPlS~YLA~-~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~ 209 (269)
T PRK05339 134 DGQDPRGLDEADVILVGVSRTSKTPTSLYLAN-KGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKE 209 (269)
T ss_pred CCCCcCCcccCCEEEECcCCCCCcHHHHHHHc-cCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHH
Confidence 2234555554443 221110 122456666677766543 55667778877777654
No 218
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=25.35 E-value=91 Score=27.76 Aligned_cols=120 Identities=19% Similarity=0.155 Sum_probs=58.6
Q ss_pred HHHHcCcccEEeccCCcHHHHHHHhccC-CcceeccccCCccccc-------hhchHHHHHHcCCcEEeecccccccccc
Q 025789 55 KLVEEGKIKYIGLSEASADTIRRAHAVH-PITAVQMEYSLWTREI-------EDDIIPLCRELGIGIVAYSPLGRGFFAG 126 (248)
Q Consensus 55 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~~~~~~~~-------~~~~~~~~~~~gi~v~~~~~l~~G~l~g 126 (248)
+|-++|.--.+=.|+.+.+.+..+.+.. .++-+..-.|.+-+.. -.+.-.+.+++|+.+.|+-|-..+ ..|
T Consensus 106 ~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~-~rG 184 (357)
T PF05913_consen 106 KLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDEN-KRG 184 (357)
T ss_dssp HHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS--BT
T ss_pred HHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCc-ccC
Confidence 3444466666677887778888887764 3444445555554431 134456778899999998776532 222
Q ss_pred ccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCC--ChHhHHHhhcc
Q 025789 127 KAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTT--KITNLDNNIGS 204 (248)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~--~~~~l~enl~a 204 (248)
+ -...+|. +-.-.+.+ ..+|.+.+...+.|.-|++|-. +.+.+++....
T Consensus 185 P-l~~GLPT---------------------------lE~hR~~~-p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 185 P-LYEGLPT---------------------------LEKHRNLP-PYAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp T-T-S--BS---------------------------BGGGTTS--HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred C-ccCCCCc---------------------------cHHHcCCC-HHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 2 0001111 00112333 3467788888888999999976 44555554444
No 219
>PF03472 Autoind_bind: Autoinducer binding domain; InterPro: IPR005143 This domain binds N-acyl homoserine lactones (AHLs), which are also known as autoinducers. These are small, diffusible molecules used as communication signals in a large variety of proteobacteria. It is almost always found in association with the DNA-binding LuxR domain (IPR000792 from INTERPRO). The autoinducer binding domain forms the N-terminal region of the protein, while the DNA-binding domain forms the C-terminal region. In most cases, binding of AHL by this N-terminal domain leads to unmasking of the DNA-binding domain, allowing it to bind DNA and activate transcription []. In rare cases, some LuxR proteins such as EsaR, act as repressors []. In these proteins binding of AHL to this domain leads to inactivation of the protein as a transcriptional regulator. A large number of processes have been shown to be regulated by LuxR proteins, including bioluminescence, production of virulence factors in plant and animal pathogens, antibiotic production and plasmid transfer. Structural studies of TraR from Agrobacterium tumefaciens [, ] show that the functional protein is a homodimer. Binding of the cognate AHL is required for protein folding, resistance to proteases and dimerisation. The autoinducer binding domain binds its cognate AHL in an alpha/beta/alpha sandwich and provides an extensive dimerisation surface, though residues from the C-terminal region also make some contribution to dimerisation. The autoinducer binding domain is also required for interaction with RpoA, allowing transcription to occur []. There are some proteins which consist solely of the autoinducer binding domain. The function of these is not known, but TrlR from Agrobacterium has been shown to inhibit the activity of TraR by the formation of inactive heterodimers [].; PDB: 3SZT_A 1H0M_A 1L3L_B 2Q0O_B 2UV0_F 3IX8_A 3IX4_C 3IX3_A 3JPU_D 3QP8_A ....
Probab=25.34 E-value=2.7e+02 Score=20.18 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEE
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLY 35 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~ 35 (248)
|.+.+.+.+.+.+.++|.+++=+.
T Consensus 1 t~~~l~~~l~~~~~~~Gf~~~~~~ 24 (149)
T PF03472_consen 1 TEDELWDLLERLAARLGFDRFAYG 24 (149)
T ss_dssp SHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 567899999999999999887666
No 220
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.26 E-value=2.4e+02 Score=24.81 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCC-CCHHHH-HHHHHHHHHcCcccEEeccCCcHHHH
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDT-MGELKKLVEEGKIKYIGLSEASADTI 75 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~-~~~~~~-~~~l~~l~~~G~ir~iGvS~~~~~~l 75 (248)
+-+.+.++++...++ |. .|+.+||+.... .+.+++ +.+|.+|++.= ---||+|.|+...+
T Consensus 158 ~~~ei~~av~~~r~~-g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~ 219 (347)
T COG2089 158 TIEEIEEAVAILREN-GN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGIL 219 (347)
T ss_pred cHHHHHHHHHHHHhc-CC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchh
Confidence 345566666544443 33 399999997543 455554 55555555553 45789999986543
No 221
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=25.23 E-value=29 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHcCcccEEe
Q 025789 44 VSIEDTMGELKKLVEEGKIKYIG 66 (248)
Q Consensus 44 ~~~~~~~~~l~~l~~~G~ir~iG 66 (248)
...++++....+|.+.|.|.++.
T Consensus 47 ~~r~eAv~lgq~Ll~~g~I~hv~ 69 (83)
T cd04449 47 DTREEAVELGQELMNEGLIEHVS 69 (83)
T ss_pred CCHHHHHHHHHHHHHCCCEEecC
Confidence 45678999999999999998874
No 222
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=25.18 E-value=1.9e+02 Score=22.64 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=14.9
Q ss_pred cEEEeccCCCC-CCHHHHHHHHHHHHHcCc
Q 025789 33 DLYYQHRVDTS-VSIEDTMGELKKLVEEGK 61 (248)
Q Consensus 33 Dl~~lH~~~~~-~~~~~~~~~l~~l~~~G~ 61 (248)
+++++|..+.. ...+.+-..+..|+++|.
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 67888853221 112333455556666663
No 223
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=25.17 E-value=3.7e+02 Score=22.76 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCC--CC-CCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcc
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVD--TS-VSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPIT 85 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~--~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 85 (248)
..++.+.-.+ +-+.|.++|+++|++=..-.|. +. ...++++..+... ..++..++. -+...++.+++.. .+
T Consensus 15 ~~~s~e~K~~-i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~---~~~~~~~~~-~~~~dv~~A~~~g-~~ 88 (274)
T cd07938 15 TFIPTEDKIE-LIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR---PGVRYSALV-PNLRGAERALAAG-VD 88 (274)
T ss_pred CCcCHHHHHH-HHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC---CCCEEEEEC-CCHHHHHHHHHcC-cC
Confidence 3456555555 5566999999999996332222 11 2234455555432 246666665 4567788887653 23
Q ss_pred eeccccCCcc--------cc------chhchHHHHHHcCCcEEe
Q 025789 86 AVQMEYSLWT--------RE------IEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 86 ~~q~~~~~~~--------~~------~~~~~~~~~~~~gi~v~~ 115 (248)
.+.+..+.-+ .. ...+.+.+++++|+.+..
T Consensus 89 ~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 89 EVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred EEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3333222211 11 014568899999998863
No 224
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.01 E-value=92 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=15.7
Q ss_pred HHHHHHHHcCcc-cEEeccCCcHHHHHH
Q 025789 51 GELKKLVEEGKI-KYIGLSEASADTIRR 77 (248)
Q Consensus 51 ~~l~~l~~~G~i-r~iGvS~~~~~~l~~ 77 (248)
+.++.+++.|.. -.+|+=+.+.+.+..
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L~~ 315 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQILKN 315 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 344556667765 378886655544433
No 225
>PRK07945 hypothetical protein; Provisional
Probab=24.95 E-value=4.7e+02 Score=22.89 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=21.3
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEe
Q 025789 29 VDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIG 66 (248)
Q Consensus 29 ~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iG 66 (248)
.||+ +.-+|+... ...++..+.+.++.+.|++..+|
T Consensus 191 ~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlg 226 (335)
T PRK07945 191 LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLG 226 (335)
T ss_pred CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEe
Confidence 4555 566676532 22345566677777777766666
No 226
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.92 E-value=1.9e+02 Score=22.93 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEE 59 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 59 (248)
..-...||+.|..||+| +.+ .|.++++..+++|+.+
T Consensus 104 qKk~K~iEq~L~elgv~---------~~P-mPTe~Ic~~fneLRsd 139 (176)
T PF05499_consen 104 QKKTKAIEQFLQELGVD---------LNP-MPTEEICQEFNELRSD 139 (176)
T ss_pred hHHHHHHHHHHHHcCCC---------CCC-CChHHHHHHHHHHHHH
Confidence 45567899999999987 233 6789999999999876
No 227
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.92 E-value=2.2e+02 Score=25.00 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=50.9
Q ss_pred HHHHHHHHHHc--Ccc-cEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEeec
Q 025789 49 TMGELKKLVEE--GKI-KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAYS 117 (248)
Q Consensus 49 ~~~~l~~l~~~--G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~~ 117 (248)
-++.+.+++++ -.| -..|=|.++...+.++++..-++++|....-.-.- ....+.++|+.+|+.++.+.
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 46777777776 322 35566778899999999988889999877653311 12678999999999998764
No 228
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=24.91 E-value=1.1e+02 Score=28.24 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 63 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir 63 (248)
+.....+.+.|++||++ .|.+. ........+.+.+.+.+|.++|.|-
T Consensus 70 ~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY 116 (511)
T PRK11893 70 DRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIY 116 (511)
T ss_pred HHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 44566788999999997 67542 1122223667889999999999964
No 229
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.91 E-value=3.6e+02 Score=21.45 Aligned_cols=68 Identities=25% Similarity=0.377 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCcccEEeccCCc--HHHHHHHhccCCcceeccccCCccc--------cchhchHHHHHHcCCcEEe
Q 025789 46 IEDTMGELKKLVEEGKIKYIGLSEAS--ADTIRRAHAVHPITAVQMEYSLWTR--------EIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 46 ~~~~~~~l~~l~~~G~ir~iGvS~~~--~~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~~~~~~~~gi~v~~ 115 (248)
.....+.++.+++.|- .+.+.++. ...+..+. ..+++.+-+..+++.. ..-..+...|+..|+.+++
T Consensus 132 ~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 132 DESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred hHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 3445588999999996 34555443 22233322 2345555554433321 1125678899999999888
Q ss_pred e
Q 025789 116 Y 116 (248)
Q Consensus 116 ~ 116 (248)
-
T Consensus 209 ~ 209 (241)
T smart00052 209 E 209 (241)
T ss_pred e
Confidence 4
No 230
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=24.90 E-value=2.4e+02 Score=25.30 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc-CCcceeccccCCccccch-hchHHHHHHcC-CcEEeecccccc
Q 025789 46 IEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREIE-DDIIPLCRELG-IGIVAYSPLGRG 122 (248)
Q Consensus 46 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~-~~~~~~~~~~g-i~v~~~~~l~~G 122 (248)
..++.+.++++....-|...=+...+.+.++++++. .+..++..+-|+...-.. ..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 456777777655554444444445577888887764 556677778888765433 67889999999 999998888877
Q ss_pred cccc
Q 025789 123 FFAG 126 (248)
Q Consensus 123 ~l~g 126 (248)
++..
T Consensus 184 ~~~~ 187 (386)
T PF01053_consen 184 YNQN 187 (386)
T ss_dssp TTC-
T ss_pred eeec
Confidence 6543
No 231
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=24.78 E-value=2.1e+02 Score=22.81 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=41.3
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc-CCcHHHHHHHhccCCcceeccccC
Q 025789 24 LKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS-EASADTIRRAHAVHPITAVQMEYS 92 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~~ 92 (248)
..++|.|++-+.+-........ .+....+.++... .+..+||- |.+.+.+.++.....++.+|+.-+
T Consensus 15 a~~~Gvd~ig~i~~~~s~R~v~-~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 15 AAEAGADAIGFIFAPKSPRYVS-PEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHHcCCCEEEEecCCCCCCCCC-HHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3478877766654332222222 3344444444433 36778874 777888888888888899998765
No 232
>TIGR03586 PseI pseudaminic acid synthase.
Probab=24.72 E-value=1e+02 Score=27.00 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=16.1
Q ss_pred hchHHHHHHcCCcEEeecccc
Q 025789 100 DDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~ 120 (248)
.++.++|++.||.+++ +|+.
T Consensus 80 ~~L~~~~~~~Gi~~~s-tpfd 99 (327)
T TIGR03586 80 KELFERAKELGLTIFS-SPFD 99 (327)
T ss_pred HHHHHHHHHhCCcEEE-ccCC
Confidence 5688999999999987 4554
No 233
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=24.54 E-value=5.7e+02 Score=23.70 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=66.3
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcceeccccCCcccc-------------
Q 025789 31 YIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE------------- 97 (248)
Q Consensus 31 ~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~------------- 97 (248)
-.|+++.--|+......+++..++.+...+.|-.-..|+.++..+.+.+......++-.++|+....
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 3566665544433224456676777767676644445555677777665543333444455543211
Q ss_pred -chhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHH-HHHHHHHHHHhCCCHHHHH
Q 025789 98 -IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLL-YTRLETLAAKYGCTTPQLA 175 (248)
Q Consensus 98 -~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ia~~~~~s~~q~a 175 (248)
.-..+.++++..|...+.......|++. ...+.. +.....++++.++++.++-
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~-------------------------nrl~~a~~~EA~~L~~~g~~s~~~id 214 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVG-------------------------DRLLEALWREALWLVKDGIATTEEID 214 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhH-------------------------HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 0133456666667665555445555443 122233 3566677788888887664
Q ss_pred HH
Q 025789 176 LA 177 (248)
Q Consensus 176 l~ 177 (248)
-.
T Consensus 215 ~~ 216 (495)
T PRK07531 215 DV 216 (495)
T ss_pred HH
Confidence 33
No 234
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.28 E-value=1e+02 Score=18.14 Aligned_cols=22 Identities=14% Similarity=0.557 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 025789 159 RLETLAAKYGCTTPQLALAWLLH 181 (248)
Q Consensus 159 ~l~~ia~~~~~s~~q~al~~~l~ 181 (248)
.+.++|.++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5677888999988765 777754
No 235
>PLN02444 HMP-P synthase
Probab=24.26 E-value=6.4e+02 Score=24.14 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCccee
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITAV 87 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 87 (248)
..+.+.+.+.+.+++..+. -+|.+-||.-- ..+.++.++ | |..|+-.-....+...+....
T Consensus 294 ~~~lt~d~~~d~ieeQaeq----GVDfmTIH~Gv-------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~---- 354 (642)
T PLN02444 294 AENLTWEVFRETLIEQAEQ----GVDYFTIHAGV-------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH---- 354 (642)
T ss_pred hhhCCHHHHHHHHHHHHHh----CCCEEEEChhh-------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC----
Confidence 3467888888888877763 47788899841 344444444 3 677777666666655543211
Q ss_pred ccccCCccccchhchHHHHHHcCCcEEeeccccccc
Q 025789 88 QMEYSLWTREIEDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 88 q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
.=|++-..+ +++++.|+++++.+ .|+-|+
T Consensus 355 --kENPlYe~F-D~ileI~k~YDVtl----SLGDGL 383 (642)
T PLN02444 355 --KENFAYEHW-DDILDICNQYDIAL----SIGDGL 383 (642)
T ss_pred --CcCchHHHH-HHHHHHHHHhCeee----eccCCc
Confidence 223444333 67999999999988 455554
No 236
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=24.15 E-value=1.8e+02 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.4
Q ss_pred hchHHHHHHcCCcEEeeccccccc
Q 025789 100 DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
..+.++++++||+.++|..+.+..
T Consensus 243 ~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 243 QTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHHHHHHhCCCCeEeeeeccCCC
Confidence 679999999999999999998753
No 237
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=24.12 E-value=1.1e+02 Score=26.86 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEec--cCCcHHHH----------HHHhc-----cCCcceeccccCCc
Q 025789 32 IDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL--SEASADTI----------RRAHA-----VHPITAVQMEYSLW 94 (248)
Q Consensus 32 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv--S~~~~~~l----------~~~~~-----~~~~~~~q~~~~~~ 94 (248)
||+++-|--..+..-.-.-..+..+.++|++.++-- |+..--.+ .+.+. ..+.+..|..+|.-
T Consensus 190 vD~LithP~~~s~~~~~~~~l~~~le~~g~il~~~~~~S~~Ek~~l~~~~s~~~~~~~~mgv~~LPr~~~~~~~~S~n~~ 269 (353)
T KOG2534|consen 190 VDFLITHPGSTSTEAKLLQLLMILLEKKGLLLYYDQLHSCGEKLRLPSRKSALDHFKKFMGVFRLPRQRVDSDQSSWNEG 269 (353)
T ss_pred eeEEEeCCCCCchhhhHHHHHHHHHHhcCeEEEEeeeccccccccccchhhhHhhhhhEEEEEEcCcccccccccccCCC
Confidence 788888876544322223355667778899987743 33321110 11111 02233333333321
Q ss_pred cccchhchHHHHHHcCCcEEeeccccccccccccccCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHH
Q 025789 95 TREIEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQL 174 (248)
Q Consensus 95 ~~~~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~ 174 (248)
---.|++-+|.++.|+-++.|+|- |+.. ..-.+.++.+|...|.+..+-
T Consensus 270 -------~~~~~rRvDivv~P~~~~~~alLg-------------------wTGS-----~~FnR~lR~~A~~kG~~l~~h 318 (353)
T KOG2534|consen 270 -------KGWKARRVDIVVCPYDEFGFALLG-------------------WTGS-----KEFNRDLRRYATHKGFSLDEH 318 (353)
T ss_pred -------CCCceeeeEEEEechHHcceeeee-------------------ecch-----HHHHHHHHHHHHhcCceeccc
Confidence 123467789999999999988762 1111 011136888888889887764
Q ss_pred HH
Q 025789 175 AL 176 (248)
Q Consensus 175 al 176 (248)
+|
T Consensus 319 ~L 320 (353)
T KOG2534|consen 319 AL 320 (353)
T ss_pred cc
Confidence 44
No 238
>PLN02880 tyrosine decarboxylase
Probab=24.06 E-value=3.7e+02 Score=24.98 Aligned_cols=52 Identities=6% Similarity=-0.020 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHcCCCcccEEEeccCC---CCCCHHHHHHHHHHHHHcCcccEEec
Q 025789 16 VRKCCEASLKRLDVDYIDLYYQHRVD---TSVSIEDTMGELKKLVEEGKIKYIGL 67 (248)
Q Consensus 16 i~~~~e~SL~rL~~d~iDl~~lH~~~---~~~~~~~~~~~l~~l~~~G~ir~iGv 67 (248)
..-+++++..-||+..=-+..+.... .....+..-+++++.+++|++-.+=|
T Consensus 190 aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vv 244 (490)
T PLN02880 190 THSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLC 244 (490)
T ss_pred chHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEE
Confidence 35677777777777544445554431 13455666677777777887655433
No 239
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=24.03 E-value=2.8e+02 Score=23.61 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHH
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRA 78 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 78 (248)
-..+...++|.++|+.||+++=.-.+. -....+.-.+++++|.++|++= . +..+.+++++.
T Consensus 46 R~~~~~~~~I~~dL~wLGl~wDe~~~~----QS~r~~~Y~~~~~~L~~~G~aY-~--C~Ct~eel~~~ 106 (272)
T TIGR03838 46 REVPGAADDILRTLEAYGLHWDGEVVY----QSQRHALYQAALDRLLAAGLAY-P--CQCTRKEIAAA 106 (272)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCeee----eeCCHHHHHHHHHHHHHcCCEE-e--cCCCHHHHHHH
Confidence 355667788999999999986212111 1123555678889999999852 2 33345566554
No 240
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=23.53 E-value=2.8e+02 Score=24.14 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCcccEEeccCCcHHH----HHHH----hcc
Q 025789 11 GSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS-VSIEDTMGELKKLVEEGKIKYIGLSEASADT----IRRA----HAV 81 (248)
Q Consensus 11 ~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~----l~~~----~~~ 81 (248)
.+.+.+.+-++...+ ..++..+-+|.-... .+..-.-+.++.|++.|+.-+||+-...+.. ..++ .+.
T Consensus 150 ~~~~~L~~ll~~l~~---i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~ 226 (321)
T TIGR03822 150 LSPRRLGDIMARLAA---IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDA 226 (321)
T ss_pred CCHHHHHHHHHHHHh---CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHc
Confidence 344555554444332 345666667742111 1111112444566677865567765433322 2222 222
Q ss_pred CCcceecccc-CCccccch--hchHHHHHHcCCcE
Q 025789 82 HPITAVQMEY-SLWTREIE--DDIIPLCRELGIGI 113 (248)
Q Consensus 82 ~~~~~~q~~~-~~~~~~~~--~~~~~~~~~~gi~v 113 (248)
+-...+|.-. .-.+...+ .++..++.+.|+..
T Consensus 227 Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~p 261 (321)
T TIGR03822 227 GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKP 261 (321)
T ss_pred CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCee
Confidence 3222344322 11223221 56677777888763
No 241
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=23.51 E-value=2.5e+02 Score=25.27 Aligned_cols=68 Identities=16% Similarity=0.066 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCcc---cEEeccCCcHHHHHHHhccCCcceeccccCCcccc-chhchHHHHHHcCCcEEee
Q 025789 49 TMGELKKLVEEGKI---KYIGLSEASADTIRRAHAVHPITAVQMEYSLWTRE-IEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 49 ~~~~l~~l~~~G~i---r~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~gi~v~~~ 116 (248)
-++.+.++++.-.+ -.-|-+.++...+..+++...++++|....-.-.- ....+.++|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46677777776442 23377788889999999988899999877654321 1267899999999998765
No 242
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=3.6e+02 Score=21.03 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=49.4
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc--CCcceeccccCCcccc-----chhchHHHHH
Q 025789 35 YYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV--HPITAVQMEYSLWTRE-----IEDDIIPLCR 107 (248)
Q Consensus 35 ~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~-----~~~~~~~~~~ 107 (248)
+|+..|..+ ..+++++..-+=-+++-|++|-|...+.....++++. ..+.++-+.|+.-... .+.++....+
T Consensus 2 ~yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHH
Confidence 344444433 2455666555555566678877765544444444333 1233555555544332 3377889999
Q ss_pred HcCCcEEeecccccc
Q 025789 108 ELGIGIVAYSPLGRG 122 (248)
Q Consensus 108 ~~gi~v~~~~~l~~G 122 (248)
++|..++.-|-..+|
T Consensus 81 erGa~v~~~sHalSg 95 (186)
T COG1751 81 ERGAKVLTQSHALSG 95 (186)
T ss_pred HcCceeeeehhhhhc
Confidence 999999876554444
No 243
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=23.27 E-value=1.8e+02 Score=23.43 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 63 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir 63 (248)
+...+.+.+.+++||+. .|.+. ... .....+.+.++.|.+.|.+.
T Consensus 68 ~~~~~~~~~~~~~L~i~-~d~~~---~es-~~~~~~~~~i~~L~~~g~~~ 112 (212)
T cd00671 68 EESIKADLETYGRLDVR-FDVWF---GES-SYLGLMGKVVELLEELGLLY 112 (212)
T ss_pred HHHHHHHHHHHHHhCCc-Cceec---chh-hhhhHHHHHHHHHHHCCCEE
Confidence 45567788899999998 58765 111 22556778888999999873
No 244
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.15 E-value=1.8e+02 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEec
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQH 38 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH 38 (248)
+.-+.+.+.+.++..+ .|+.++|.+|.+.
T Consensus 165 Pgqt~~~~~~~l~~~~-~l~~~~is~y~l~ 193 (370)
T PRK06294 165 PTQSLSDFIVDLHQAI-TLPITHISLYNLT 193 (370)
T ss_pred CCCCHHHHHHHHHHHH-ccCCCeEEEeeeE
Confidence 3457778888777766 4888999988776
No 245
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.13 E-value=42 Score=26.33 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHHHhHcCCCcccEEEeccCCC--------------CCCHHHHHHHHHHHHHcC-cccEEeccCCc--HHHHHHHh
Q 025789 17 RKCCEASLKRLDVDYIDLYYQHRVDT--------------SVSIEDTMGELKKLVEEG-KIKYIGLSEAS--ADTIRRAH 79 (248)
Q Consensus 17 ~~~~e~SL~rL~~d~iDl~~lH~~~~--------------~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~--~~~l~~~~ 79 (248)
.+.++...+.+-.+-.|++.-..... .....+++++|..+++.| +|..+|..+.. ...+.+++
T Consensus 20 e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll 99 (176)
T PF06506_consen 20 EEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL 99 (176)
T ss_dssp HHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh
Confidence 34444444432335577776654311 122457899999988776 67777777764 56666666
Q ss_pred ccCCcceeccccCCccccchhchHHHHHHcCCcEEeecc
Q 025789 80 AVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 80 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 118 (248)
. ++..+..|+-.+. -...+..+++.|+.++.-+.
T Consensus 100 ~---~~i~~~~~~~~~e--~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 100 G---VDIKIYPYDSEEE--IEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp T----EEEEEEESSHHH--HHHHHHHHHHTT--EEEESH
T ss_pred C---CceEEEEECCHHH--HHHHHHHHHHcCCcEEECCH
Confidence 3 3455555543221 25678888889999887443
No 246
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=23.13 E-value=43 Score=26.73 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=11.2
Q ss_pred HHHhHcCCCcccEEE
Q 025789 22 ASLKRLDVDYIDLYY 36 (248)
Q Consensus 22 ~SL~rL~~d~iDl~~ 36 (248)
+.|+.||+||||===
T Consensus 87 qiLealgVD~IDESE 101 (208)
T PF01680_consen 87 QILEALGVDYIDESE 101 (208)
T ss_dssp HHHHHTT-SEEEEET
T ss_pred hhHHHhCCceecccc
Confidence 578999999999543
No 247
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.06 E-value=4.4e+02 Score=21.90 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=8.0
Q ss_pred chHHHHHHc-CCcEEeecc
Q 025789 101 DIIPLCREL-GIGIVAYSP 118 (248)
Q Consensus 101 ~~~~~~~~~-gi~v~~~~~ 118 (248)
.+...+.++ ++.+...+|
T Consensus 49 ~l~~~~~~~~~~~i~~~~~ 67 (279)
T cd00019 49 KFKAIAEEGPSICLSVHAP 67 (279)
T ss_pred HHHHHHHHcCCCcEEEEcC
Confidence 344444444 444444433
No 248
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=22.98 E-value=2.1e+02 Score=24.48 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=59.4
Q ss_pred CcccEEeccCCcHHHHHHHhcc---CCcceeccccCCcccc---chhchHHHHHHcCCcEEeeccccccccccccccCCC
Q 025789 60 GKIKYIGLSEASADTIRRAHAV---HPITAVQMEYSLWTRE---IEDDIIPLCRELGIGIVAYSPLGRGFFAGKAVVESL 133 (248)
Q Consensus 60 G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~---~~~~~~~~~~~~gi~v~~~~~l~~G~l~g~~~~~~~ 133 (248)
+++-.+.-.+++.+.+.++.+. ..+...-.-+|-++.. -+..+.+++++-++-++.-+.-.+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss------------ 222 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS------------ 222 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H------------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc------------
Confidence 4677777777777666555433 1112211223333321 135677777777765554211110
Q ss_pred CchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCC------CHHHHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 134 PSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
--.+|.++|++.+. ++.++-..|+-... ...+..|+|+|+.+-+.+
T Consensus 223 ----------------------NT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 223 ----------------------NTRKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGASTPDWIIEEV 274 (281)
T ss_dssp ----------------------HHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS-HHHHHHH
T ss_pred ----------------------cHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 11389999999885 57889899988876 457889999999887765
No 249
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.90 E-value=3.5e+02 Score=20.65 Aligned_cols=19 Identities=5% Similarity=0.350 Sum_probs=15.7
Q ss_pred hchHHHHHHcCCcEEeecc
Q 025789 100 DDIIPLCRELGIGIVAYSP 118 (248)
Q Consensus 100 ~~~~~~~~~~gi~v~~~~~ 118 (248)
..++..|+++|+.+++|..
T Consensus 150 ~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred HHHHHHHHHcCCEEEEEcC
Confidence 5678889999999998854
No 250
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.88 E-value=4.6e+02 Score=21.98 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcC-cccEEeccCCcH------HHHHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEE-eec
Q 025789 46 IEDTMGELKKLVEEG-KIKYIGLSEASA------DTIRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIV-AYS 117 (248)
Q Consensus 46 ~~~~~~~l~~l~~~G-~ir~iGvS~~~~------~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~-~~~ 117 (248)
++++++.++++++.. .+..+.++-+++ +.+.+.+....++.+-++.-+.+. ..++++.|+++|+..+ ..+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee--~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEE--SGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHH--HHHHHHHHHHCCCcEEEEEC
Confidence 456788888888652 344344444444 443333344445555555444432 2678899999998854 444
Q ss_pred cc
Q 025789 118 PL 119 (248)
Q Consensus 118 ~l 119 (248)
|-
T Consensus 149 P~ 150 (256)
T TIGR00262 149 PN 150 (256)
T ss_pred CC
Confidence 43
No 251
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.81 E-value=2e+02 Score=20.72 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCC--cccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVD--YIDLYYQHRVDTSVSIEDTMGELKKLVEEG 60 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d--~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 60 (248)
....+.+.+.+.+++.|++-|++ -||.+..|.........--++++.++....
T Consensus 19 ~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 19 LTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred CcCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 45567899999999999998876 678888887643321122245555555443
No 252
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=22.73 E-value=2.8e+02 Score=22.17 Aligned_cols=72 Identities=15% Similarity=-0.032 Sum_probs=43.8
Q ss_pred chHHHHHHcCCcEEe-eccccccccccccc-cCCCCchhhhhcCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 025789 101 DIIPLCRELGIGIVA-YSPLGRGFFAGKAV-VESLPSESILAMHPRFSGENLEKNKLLYTRLETLAAKYGCTTPQLALAW 178 (248)
Q Consensus 101 ~~~~~~~~~gi~v~~-~~~l~~G~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~~~s~~q~al~~ 178 (248)
+--...+++||-++. +-.-++|...+-.. ....+. + ..............+-+.++++++++.++|..-
T Consensus 123 ~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~-~--------~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA~~~ 193 (200)
T cd01075 123 RHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEA-R--------VLAKVEAIYDTLLEIFAQAKQDGITTLEAADRM 193 (200)
T ss_pred hHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHH-H--------HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445667888999888 66667676553311 110000 0 011223445566677788999999999998876
Q ss_pred HHh
Q 025789 179 LLH 181 (248)
Q Consensus 179 ~l~ 181 (248)
++.
T Consensus 194 a~~ 196 (200)
T cd01075 194 AEE 196 (200)
T ss_pred HHH
Confidence 654
No 253
>PLN02775 Probable dihydrodipicolinate reductase
Probab=22.64 E-value=3.4e+02 Score=23.41 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 18 KCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 18 ~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
..+++.|..+.-+|.|++.+-.- ..+-+.+.++.+.+.|+--=+|.++|+.+++.++.+.
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDFT----~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDYT----LPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEECC----ChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 45666676665568887777443 3455788888999999999999999999988877665
No 254
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=22.55 E-value=4.1e+02 Score=22.29 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCcc
Q 025789 10 KGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVS-IEDTMGELKKLVEEGKI 62 (248)
Q Consensus 10 ~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~i 62 (248)
.++.+...+-.+-+.+-+++|+|-+=.|-....-.| .-|++++.|.|+++|-+
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 456677777778888889999999888877655443 56899999999999863
No 255
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.51 E-value=6e+02 Score=23.25 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhHc-CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEec--cCCcHHHHHHHhccCCcce
Q 025789 10 KGSPEYVRKCCEASLKRL-DVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGL--SEASADTIRRAHAVHPITA 86 (248)
Q Consensus 10 ~~s~~~i~~~~e~SL~rL-~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~ 86 (248)
..+++.|.+.++...++. ++ .-+++.........+.+.+.++.+++.|. ..... .+.+.+.++.+.+. .+..
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~---~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i-~~~~~~~~~~~~e~l~~l~~a-G~~~ 300 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEV---REFFFDDDTFTDDKPRAEEIARKLGPLGV-TWSCNARANVDYETLKVMKEN-GLRL 300 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHhhcCc-eEEEEecCCCCHHHHHHHHHc-CCCE
Confidence 358899999999888876 43 33444443333334445555566666653 22221 23455555554443 2333
Q ss_pred eccccCCccc--------cc----hhchHHHHHHcCCcEEeeccc
Q 025789 87 VQMEYSLWTR--------EI----EDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 87 ~q~~~~~~~~--------~~----~~~~~~~~~~~gi~v~~~~~l 119 (248)
+.+..--.+. .. ..+.+..|+++||.+.+.--+
T Consensus 301 v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~Ii 345 (472)
T TIGR03471 301 LLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFIL 345 (472)
T ss_pred EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 3333222221 11 145678889999987664443
No 256
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=22.16 E-value=3.6e+02 Score=26.05 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred HHHHHHHHhCC------CHHHHHHHHHHhCCCCceeecCCCChHhHHHhh
Q 025789 159 RLETLAAKYGC------TTPQLALAWLLHQGDDIVPIPGTTKITNLDNNI 202 (248)
Q Consensus 159 ~l~~ia~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl 202 (248)
+|.++|++.|. ++.++.-.|.-.... ..+..|+|+|+.+-+.+
T Consensus 223 ~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitagaStP~~~i~~v 271 (647)
T PRK00087 223 KLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAGASTPDWIIEEV 271 (647)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEeccCCCHHHHHHH
Confidence 88999998874 578888899877664 57889999999776543
No 257
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.14 E-value=3.1e+02 Score=19.71 Aligned_cols=89 Identities=11% Similarity=0.146 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEecc----C-CcHHHHHHHhccCCcceecc
Q 025789 15 YVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS----E-ASADTIRRAHAVHPITAVQM 89 (248)
Q Consensus 15 ~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS----~-~~~~~l~~~~~~~~~~~~q~ 89 (248)
.+.-.+-+++++||. ..+.++...+.... .....-+.-.++-. + -+.+.+.++......+.+--
T Consensus 12 eia~r~~ra~r~~Gi---~tv~v~s~~d~~s~--------~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 12 EIAVRIIRALRELGI---ETVAVNSNPDTVST--------HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp HHHHHHHHHHHHTTS---EEEEEEEGGGTTGH--------HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred HHHHHHHHHHHHhCC---cceeccCchhcccc--------cccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 345556778888885 45555554332211 22333445555522 2 36788888777778888888
Q ss_pred ccCCccccchhchHHHHHHcCCcEEee
Q 025789 90 EYSLWTREIEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~gi~v~~~ 116 (248)
-|..+... .++-..|.+.||.+++=
T Consensus 81 Gyg~lse~--~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 81 GYGFLSEN--AEFAEACEDAGIIFIGP 105 (110)
T ss_dssp TSSTTTTH--HHHHHHHHHTT-EESSS
T ss_pred ccchhHHH--HHHHHHHHHCCCEEECc
Confidence 88888874 56788889999988753
No 258
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.10 E-value=4.4e+02 Score=21.52 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=33.7
Q ss_pred CcccEEeccCCcHHHHHHHhccCCcceeccccCCccc--------cchhchHHHHHHcC-CcEEeeccc
Q 025789 60 GKIKYIGLSEASADTIRRAHAVHPITAVQMEYSLWTR--------EIEDDIIPLCRELG-IGIVAYSPL 119 (248)
Q Consensus 60 G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~~~~~~--------~~~~~~~~~~~~~g-i~v~~~~~l 119 (248)
|.=..||+|+|+.++++++.+.. +|++ -+.++.. ...-+.+.+.++.. +++++.+-+
T Consensus 102 ~~~~iIG~S~h~~eea~~A~~~g-~DYv--~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi 167 (211)
T COG0352 102 GPGLIIGLSTHDLEEALEAEELG-ADYV--GLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI 167 (211)
T ss_pred CCCCEEEeecCCHHHHHHHHhcC-CCEE--EECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC
Confidence 44458999999999999987663 2322 1122111 11234555666665 888776444
No 259
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.98 E-value=2.8e+02 Score=23.33 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHH---HH--------HHHHHHHcC-cccEEeccCCcHHHH
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDT---MG--------ELKKLVEEG-KIKYIGLSEASADTI 75 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~---~~--------~l~~l~~~G-~ir~iGvS~~~~~~l 75 (248)
+|....+.+.+-++-+ .++|+.++-+|-+---+..-+.+|+ ++ .+..+.+.| +|+.||=-+.-++.+
T Consensus 39 GH~~G~~~l~~i~~~c-~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~viGd~~~Lp~~l 117 (249)
T PRK14834 39 GHRAGVEALRRVVRAA-GELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADI 117 (249)
T ss_pred hHHHHHHHHHHHHHHH-HHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCHHH
Confidence 3445556666655554 4789999999998765554444332 22 233444556 678888655544554
Q ss_pred HHH
Q 025789 76 RRA 78 (248)
Q Consensus 76 ~~~ 78 (248)
.+.
T Consensus 118 ~~~ 120 (249)
T PRK14834 118 CAL 120 (249)
T ss_pred HHH
Confidence 433
No 260
>PRK05968 hypothetical protein; Provisional
Probab=21.85 E-value=4.6e+02 Score=23.35 Aligned_cols=52 Identities=8% Similarity=0.035 Sum_probs=34.0
Q ss_pred cHHHHHHHhccCCcceeccccCCccccc-hhchHHHHHHcCCcEEeecccccc
Q 025789 71 SADTIRRAHAVHPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRG 122 (248)
Q Consensus 71 ~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~~~~~l~~G 122 (248)
+++.+++++...+..++..+.|+.-... -.++.+.|+++|+.++.=...+.+
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 5677777665455566666666654322 267889999999988865555444
No 261
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=21.78 E-value=8.4e+02 Score=24.61 Aligned_cols=101 Identities=16% Similarity=0.274 Sum_probs=67.6
Q ss_pred HHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcc----cEEeccCC--cHH-------HHHHHhcc--
Q 025789 17 RKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKI----KYIGLSEA--SAD-------TIRRAHAV-- 81 (248)
Q Consensus 17 ~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i----r~iGvS~~--~~~-------~l~~~~~~-- 81 (248)
.+.+.+.-++.|.+-+--|.|-.. ....++++.+--+|+.|.+ -.+.|..- +.+ .+.+++..
T Consensus 471 ~r~a~~~~~~~G~~~i~~yIISma---~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~ 547 (910)
T COG2352 471 FRVAAEAKDEFGEDAIGAYIISMA---ESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPL 547 (910)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcc---CCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChH
Confidence 345666667788776777776443 4578899999999999999 55666531 233 33444332
Q ss_pred --------CCcceeccccCCcccc------------chhchHHHHHHcCCcEEeecccc
Q 025789 82 --------HPITAVQMEYSLWTRE------------IEDDIIPLCRELGIGIVAYSPLG 120 (248)
Q Consensus 82 --------~~~~~~q~~~~~~~~~------------~~~~~~~~~~~~gi~v~~~~~l~ 120 (248)
....-|++.||==+.. .+..+.+.|+++||.+.-+..=|
T Consensus 548 yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRG 606 (910)
T COG2352 548 YRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRG 606 (910)
T ss_pred HHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCC
Confidence 3466778888854442 23778999999999987765443
No 262
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.76 E-value=2.4e+02 Score=24.21 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHhHcCCCcccEEEeccCC--CCCCHHHHHHHHHH-HHHcCcccEEeccCCcHHHHHHHhcc
Q 025789 20 CEASLKRLDVDYIDLYYQHRVD--TSVSIEDTMGELKK-LVEEGKIKYIGLSEASADTIRRAHAV 81 (248)
Q Consensus 20 ~e~SL~rL~~d~iDl~~lH~~~--~~~~~~~~~~~l~~-l~~~G~ir~iGvS~~~~~~l~~~~~~ 81 (248)
.-.||..++-|-. ++-+|.+. .+.+.+..+.-+.+ +++-|....+|++.-+.+.++++.+.
T Consensus 162 ~lasL~k~~e~g~-~L~V~g~GsDGEL~~eyllrriseia~egGlLg~~gl~r~d~ell~~l~~~ 225 (328)
T COG4034 162 SLASLAKVEEDGV-ELAVMGPGSDGELSREYLLRRISEIAREGGLLGTVGLDRRDVELLEKLVKD 225 (328)
T ss_pred HHHHHHhhcccce-EEEEEecCCCCceeHHHHHHHHHHHHhhCCeeeeeccchhHHHHHHHHHHH
Confidence 3468888887655 77778774 34567777755554 55668889999999998888887664
No 263
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=21.53 E-value=1.4e+02 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=24.4
Q ss_pred HhCCC---HHHHHHHHHHhCCCCceeecCCCChH
Q 025789 166 KYGCT---TPQLALAWLLHQGDDIVPIPGTTKIT 196 (248)
Q Consensus 166 ~~~~s---~~q~al~~~l~~~~v~~~i~G~~~~~ 196 (248)
+.|++ ...-+..|+++++.|..||+|+....
T Consensus 217 ~~GI~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~ 250 (356)
T PRK08334 217 YDGIPLKLISDNMAGFVMQQGKVDAIIVGADRIV 250 (356)
T ss_pred HCCCCEEEEehhHHHHHhhhcCCCEEEECccEEe
Confidence 56776 35778889999988999999986543
No 264
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=21.41 E-value=31 Score=23.20 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceeecC---CCChHhHHHhhcccCCC
Q 025789 156 LYTRLETLAAKYGCTTPQLALAWLLHQGDDIVPIPG---TTKITNLDNNIGSLALK 208 (248)
Q Consensus 156 ~~~~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G---~~~~~~l~enl~a~~~~ 208 (248)
....+.++-++.|.|..++|-+--.++|.|+-..-| ..+.+.|...+.+++..
T Consensus 19 l~~~i~~~~~~~~ltQ~e~A~~lgisq~~vS~l~~g~~~~~sl~~L~~~l~aLG~~ 74 (80)
T PF13744_consen 19 LMAAIRELREERGLTQAELAERLGISQPRVSRLENGKIDDFSLDTLLRYLEALGGR 74 (80)
T ss_dssp HHHHHHHHHHCCT--HHHHHHHHTS-HHHHHHHHTT-GCC--HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCChhHHHHHHcCcccCCCHHHHHHHHHHcCCe
Confidence 345677778888999999998888888877766643 45677777777777653
No 265
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=21.21 E-value=1.4e+02 Score=27.04 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHHHHHHhccCCcce
Q 025789 7 IGVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 7 ~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
-..+.+.+.+.+.+++..+. =+|.+-+|.-- ..+.++.++++|++. |+-+-....+...+....
T Consensus 132 ~~~~~t~d~~~~~ie~qa~~----GVDfmtiH~gi-------t~~~~~~~~~~~R~~--giVSRGGs~l~~WM~~n~--- 195 (420)
T PF01964_consen 132 SIVDMTEDDFFDVIEKQAKD----GVDFMTIHCGI-------TRETLERLKKSGRIM--GIVSRGGSILAAWMLHNG--- 195 (420)
T ss_dssp -GGG--HHHHHHHHHHHHHH----T--EEEE-TT---------GGGGGGGT--TSSS------HHHHHHHHHHHHHT---
T ss_pred ChhhCCHHHHHHHHHHHHHc----CCCEEEEccch-------hHHHHHHHhhhcccc--CccccchHHHHHHHHhcC---
Confidence 34678899999999988874 47889999852 345666777777654 444444444444432211
Q ss_pred eccccCCccccchhchHHHHHHcCCcEEeeccc
Q 025789 87 VQMEYSLWTREIEDDIIPLCRELGIGIVAYSPL 119 (248)
Q Consensus 87 ~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~l 119 (248)
.=|++...+ +++++.|+++++.+---..|
T Consensus 196 ---~ENPly~~f-D~lLeI~k~yDVtLSLGDgl 224 (420)
T PF01964_consen 196 ---KENPLYEHF-DRLLEIAKEYDVTLSLGDGL 224 (420)
T ss_dssp ---S--HHHHTH-HHHHHHHTTTT-EEEE--TT
T ss_pred ---CcCcHHHhH-HHHHHHHHHhCeeEeccccc
Confidence 223333332 67899999999888443333
No 266
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.19 E-value=92 Score=29.72 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEE---EeccCCCCCCHHHHHHHHHHHHHcC-cccEE---------eccCCcHHH-
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLY---YQHRVDTSVSIEDTMGELKKLVEEG-KIKYI---------GLSEASADT- 74 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~---~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~i---------GvS~~~~~~- 74 (248)
..++.+...+-++ .|.+.|+++|++. -.+..- ...-++.|+.++.+++.. .++.. |..++.-+.
T Consensus 16 ~~~~t~dkl~ia~-~L~~~Gv~~IE~~GGatfd~~~-~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv 93 (582)
T TIGR01108 16 TRMRTEDMLPIAE-KLDDVGYWSLEVWGGATFDACI-RFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVV 93 (582)
T ss_pred ccCCHHHHHHHHH-HHHHcCCCEEEecCCccccccc-ccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhH
Confidence 4677777777554 4889999999995 000000 000122466666665532 23333 333444333
Q ss_pred ---HHHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEee
Q 025789 75 ---IRRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 75 ---l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~~ 116 (248)
++.+.+ ..++.+.+..++-+...-...++.++++|+.+...
T Consensus 94 ~~~v~~a~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 94 ERFVKKAVE-NGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred HHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
Confidence 333333 34555555544433322356778899999876643
No 267
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.19 E-value=1.2e+02 Score=22.85 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=33.6
Q ss_pred HHHHHHhHcCCCcccEEEeccC----CCCCCHHHHHHHHHHHHHcCcccEEeccC
Q 025789 19 CCEASLKRLDVDYIDLYYQHRV----DTSVSIEDTMGELKKLVEEGKIKYIGLSE 69 (248)
Q Consensus 19 ~~e~SL~rL~~d~iDl~~lH~~----~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 69 (248)
+|-+.|..-.-++++...|+.- .+......+++.|+.|.+.|.|+.+-+.+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~~~~ 75 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3444444433345665555532 33455778999999999999999987654
No 268
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=21.18 E-value=5.9e+02 Score=22.67 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-ccEEeccCCcHHHHHHHhccCCcce
Q 025789 8 GVKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK-IKYIGLSEASADTIRRAHAVHPITA 86 (248)
Q Consensus 8 ~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~ 86 (248)
+..++.+...+ +-+.|.++|+++|++- +|... ++-++.++.+.+.|. .+.++.+-.....++.+.+.. ++.
T Consensus 20 ~~~~s~e~k~~-ia~~L~~~GV~~IE~G---~p~~~---~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~ 91 (378)
T PRK11858 20 GVVFTNEEKLA-IARMLDEIGVDQIEAG---FPAVS---EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCG-VDA 91 (378)
T ss_pred CCCCCHHHHHH-HHHHHHHhCCCEEEEe---CCCcC---hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCC-cCE
Confidence 45778887666 4456999999999974 33221 122445555555554 444555544577777776652 334
Q ss_pred eccccCCccc--------c------chhchHHHHHHcCCcEEee
Q 025789 87 VQMEYSLWTR--------E------IEDDIIPLCRELGIGIVAY 116 (248)
Q Consensus 87 ~q~~~~~~~~--------~------~~~~~~~~~~~~gi~v~~~ 116 (248)
+.+....-+. . .-.+.+.++++.|+.+...
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4443332221 1 0145677899999876543
No 269
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.11 E-value=3.2e+02 Score=19.82 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=24.5
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHcCcccEEecc
Q 025789 36 YQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLS 68 (248)
Q Consensus 36 ~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 68 (248)
.+=..|.+.+.+.+.+.|+.+++.| +..+|+.
T Consensus 87 v~i~aD~~~~~~~vv~v~d~~~~~G-~~~v~l~ 118 (121)
T TIGR02804 87 VTLKSDKEAKFQDFVTITDMLKAKE-HENVQIV 118 (121)
T ss_pred EEEEeCCCCCHhHHHHHHHHHHHcC-CCeEEEE
Confidence 3345577888999999999999999 4446654
No 270
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.07 E-value=4.7e+02 Score=22.99 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=38.9
Q ss_pred ccEEeccCCcHHHHHHHhcc-CCcceeccccCCccccc-hhchHHHHHHcCCcEEeeccccccc
Q 025789 62 IKYIGLSEASADTIRRAHAV-HPITAVQMEYSLWTREI-EDDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 62 ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
++..-+...+++.+++++.. .+..++..+.|+.-... -.++.+.|+++|+.++.=...+.++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 33344444567777777643 34445556777754322 2678999999999988766654443
No 271
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.92 E-value=5.9e+02 Score=22.54 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=58.9
Q ss_pred HhHcCCCcccEEEeccCCCC-----------CCHHHHHHHHHHHHHc-Cc---ccEEecc--CCcHHHHHHH---hccCC
Q 025789 24 LKRLDVDYIDLYYQHRVDTS-----------VSIEDTMGELKKLVEE-GK---IKYIGLS--EASADTIRRA---HAVHP 83 (248)
Q Consensus 24 L~rL~~d~iDl~~lH~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--~~~~~~l~~~---~~~~~ 83 (248)
|...+...+++ -||.++++ .+++++++++.+.... |+ |+++=+. |.+.++++++ +...+
T Consensus 208 L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~ 286 (354)
T PRK14460 208 LGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTK 286 (354)
T ss_pred HHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44444434443 46766442 3567888888765543 22 4455444 4444555444 44455
Q ss_pred cceeccccCCcccc----ch----hchHHHHHHcCCcEEeeccccccc
Q 025789 84 ITAVQMEYSLWTRE----IE----DDIIPLCRELGIGIVAYSPLGRGF 123 (248)
Q Consensus 84 ~~~~q~~~~~~~~~----~~----~~~~~~~~~~gi~v~~~~~l~~G~ 123 (248)
..++-++||..... +. ..+.+..+++|+.+......+..+
T Consensus 287 ~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di 334 (354)
T PRK14460 287 CKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDI 334 (354)
T ss_pred CcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCch
Confidence 66788899986432 11 345667778899998888876543
No 272
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=20.82 E-value=98 Score=22.62 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEe
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQ 37 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~l 37 (248)
..+.+.++...-+||+||||+.-+
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv 30 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRV 30 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeE
Confidence 456788899999999999876433
No 273
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=20.80 E-value=4.7e+02 Score=25.09 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC------CCHHHHHHHHHHHHHcCc-ccE---------EeccCCcH
Q 025789 9 VKGSPEYVRKCCEASLKRLDVDYIDLYYQHRVDTS------VSIEDTMGELKKLVEEGK-IKY---------IGLSEASA 72 (248)
Q Consensus 9 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~------~~~~~~~~~l~~l~~~G~-ir~---------iGvS~~~~ 72 (248)
..++.+.... +-..|.+.|++.|+++ .... ..-++-|+.|..+++... ++. +|.+++.-
T Consensus 21 tr~~t~d~l~-ia~~l~~~G~~~iE~~----ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd 95 (592)
T PRK09282 21 TRMRTEDMLP-IAEKLDKVGFWSLEVW----GGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPD 95 (592)
T ss_pred ccCCHHHHHH-HHHHHHHcCCCEEEec----CCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccc
Confidence 4567776666 5556888999999994 1111 112356888888777632 332 34455543
Q ss_pred HHH----HHHhccCCcceeccccCCccccchhchHHHHHHcCCcEEe
Q 025789 73 DTI----RRAHAVHPITAVQMEYSLWTREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 73 ~~l----~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~gi~v~~ 115 (248)
+.+ +.+.+ ..++.+.+..++-+...-...++.++++|..+.+
T Consensus 96 ~vv~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 141 (592)
T PRK09282 96 DVVEKFVEKAAE-NGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQG 141 (592)
T ss_pred hhhHHHHHHHHH-CCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEE
Confidence 333 33332 3456666655554433235667888899987653
No 274
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.52 E-value=3.4e+02 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHcCcccEEec
Q 025789 44 VSIEDTMGELKKLVEEGKIKYIGL 67 (248)
Q Consensus 44 ~~~~~~~~~l~~l~~~G~ir~iGv 67 (248)
...+++++.+..|.+.| +-+|-|
T Consensus 221 ~~~~e~~~i~~~Le~~G-~d~i~v 243 (353)
T cd02930 221 STWEEVVALAKALEAAG-ADILNT 243 (353)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEe
Confidence 34566666666666666 344444
No 275
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.42 E-value=3.2e+02 Score=22.24 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=50.3
Q ss_pred HHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc---ccEEeccCC-cHHHHHHHhccC-CcceeccccCCc
Q 025789 20 CEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGK---IKYIGLSEA-SADTIRRAHAVH-PITAVQMEYSLW 94 (248)
Q Consensus 20 ~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~---ir~iGvS~~-~~~~l~~~~~~~-~~~~~q~~~~~~ 94 (248)
+-+.|..-|+.-+.+=+= ....++.+++++++-. =-.||..+- +.++++.+++.+ .|-+ ++
T Consensus 30 ~~~al~~~Gi~~iEit~~--------~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-----sP- 95 (213)
T PRK06552 30 ISLAVIKGGIKAIEVTYT--------NPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-----SP- 95 (213)
T ss_pred HHHHHHHCCCCEEEEECC--------CccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-----CC-
Confidence 445566666665555441 1235566666665421 146888775 688888887764 2221 22
Q ss_pred cccchhchHHHHHHcCCcEEe
Q 025789 95 TREIEDDIIPLCRELGIGIVA 115 (248)
Q Consensus 95 ~~~~~~~~~~~~~~~gi~v~~ 115 (248)
....+++++|+++|+.++.
T Consensus 96 --~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 96 --SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred --CCCHHHHHHHHHcCCCEEC
Confidence 2247899999999999987
No 276
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.33 E-value=2.3e+02 Score=18.36 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCC
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDT 42 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~ 42 (248)
.++.|.+.|++.+..|| -|+++++.....
T Consensus 3 kre~i~~~iR~~fs~lG--~I~vLYvn~~eS 31 (62)
T PF15513_consen 3 KREEITAEIRQFFSQLG--EIAVLYVNPYES 31 (62)
T ss_pred HHHHHHHHHHHHHHhcC--cEEEEEEccccc
Confidence 46889999999999999 499999976643
No 277
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=20.31 E-value=3.5e+02 Score=20.85 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCCceeecCCCChHhHHHhhcccCCCCCHHHHHHHHh
Q 025789 159 RLETLAAKYGCTTPQLALAWLLHQGDDIVPIPGTTKITNLDNNIGSLALKLKEEDLKEICK 219 (248)
Q Consensus 159 ~l~~ia~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~l~enl~a~~~~Lt~~~~~~l~~ 219 (248)
...+||++.|+|..-++-.+.-++.. ++++.+...+.+ .|+++....|..
T Consensus 23 Twe~IAe~iG~sevwvaaa~lGQ~~l---------s~e~A~kla~lL--gL~~e~~~~l~~ 72 (150)
T TIGR00673 23 TFADIADGLGLAEVFVAAALYGQAAA---------PADEARLVGAKL--DLDEDSILELQM 72 (150)
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCCCC---------CHHHHHHHHHHh--CcCHHHHHHHhc
Confidence 35566777777666555555544443 667777777765 588888888754
No 278
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=20.23 E-value=2.3e+02 Score=26.06 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 025789 14 EYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIK 63 (248)
Q Consensus 14 ~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir 63 (248)
+...+.+.+.+++||+...|.+ +......+++.+..++|.++|.+-
T Consensus 91 ~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 91 ERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 4455668889999999777754 222345778889999999999873
No 279
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=20.23 E-value=35 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcCcccEEeccCCcHH
Q 025789 44 VSIEDTMGELKKLVEEGKIKYIGLSEASAD 73 (248)
Q Consensus 44 ~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 73 (248)
....|++..-..|.+.|.|.++|.-.....
T Consensus 48 i~R~EAv~l~q~Lmd~gli~hV~~~s~~~~ 77 (109)
T cd04444 48 ASRLEAVTLASMLMEENFLRPVGVRSMGAI 77 (109)
T ss_pred CCHHHHHHHHHHHHhCCchhhHHHHhhhhh
Confidence 467889999999999999999987655433
No 280
>PRK13796 GTPase YqeH; Provisional
Probab=20.12 E-value=5.7e+02 Score=22.61 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccEEeccCCcHHH
Q 025789 12 SPEYVRKCCEASLKRLDVDYIDLYYQHRVDTSVSIEDTMGELKKLVEEGKIKYIGLSEASADT 74 (248)
Q Consensus 12 s~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 74 (248)
..+.+..-++...+.+|....|++++..- .....+++++.+.+..+.+.+-.+|.+|..-.-
T Consensus 114 ~~~~i~~~l~~~~k~~g~~~~~v~~vSAk-~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 114 KKNKVKNWLRQEAKELGLRPVDVVLISAQ-KGHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCcCcEEEEECC-CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 34566666666677778655577776543 345678888888888777889999999997444
No 281
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=20.06 E-value=61 Score=29.86 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=29.8
Q ss_pred CcccEEeccCCcHHHHHHHhccCC-cceeccccCCccccchhchHHHHHHcCCc
Q 025789 60 GKIKYIGLSEASADTIRRAHAVHP-ITAVQMEYSLWTREIEDDIIPLCRELGIG 112 (248)
Q Consensus 60 G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~~~~~~~~~~~~~~~~~~~gi~ 112 (248)
|.++++|+..++.+.+.++..... -+.++.+..++-.....++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 457888988888777777655422 23444444443332234455555555543
Done!