Query 025790
Match_columns 248
No_of_seqs 127 out of 599
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00007 (NAP-L) nucleosome as 100.0 2.2E-58 4.7E-63 421.1 19.9 219 10-228 26-285 (337)
2 KOG1507 Nucleosome assembly pr 100.0 9.6E-58 2.1E-62 410.9 16.8 217 12-228 64-345 (358)
3 PTZ00008 (NAP-S) nucleosome as 100.0 3E-54 6.5E-59 366.2 16.6 181 39-226 2-184 (185)
4 PF00956 NAP: Nucleosome assem 100.0 4.8E-53 1E-57 373.6 20.9 198 24-222 1-244 (244)
5 KOG1508 DNA replication factor 100.0 1.8E-33 3.9E-38 250.5 7.9 208 15-228 22-229 (260)
6 PF11629 Mst1_SARAH: C termina 95.5 0.053 1.2E-06 36.3 5.4 37 30-66 10-46 (49)
7 PF07352 Phage_Mu_Gam: Bacteri 90.5 1 2.2E-05 36.9 6.6 56 21-76 3-58 (149)
8 COG4396 Mu-like prophage host- 86.1 1.6 3.4E-05 35.7 4.8 61 17-77 14-74 (170)
9 PF07516 SecA_SW: SecA Wing an 64.5 22 0.00048 30.6 6.3 45 28-72 9-53 (214)
10 KOG1508 DNA replication factor 59.2 0.23 5E-06 44.7 -7.2 131 61-222 21-152 (260)
11 COG1507 Uncharacterized conser 42.2 1.4E+02 0.0031 24.7 7.1 56 19-76 55-118 (167)
12 KOG0574 STE20-like serine/thre 42.2 36 0.00078 31.9 4.1 40 27-66 453-492 (502)
13 KOG3891 Secretory vesicle-asso 36.8 55 0.0012 30.9 4.4 86 17-106 174-270 (436)
14 smart00502 BBC B-Box C-termina 34.7 1.1E+02 0.0023 23.0 5.2 55 21-75 14-68 (127)
15 PF14388 DUF4419: Domain of un 31.4 59 0.0013 29.8 3.7 35 52-86 164-201 (299)
16 PF10417 1-cysPrx_C: C-termina 28.9 21 0.00045 22.7 0.3 14 150-163 10-23 (40)
17 COG3883 Uncharacterized protei 28.1 1.6E+02 0.0035 26.7 5.8 34 59-92 99-134 (265)
18 COG3074 Uncharacterized protei 27.8 2.3E+02 0.005 20.5 5.4 65 15-81 5-69 (79)
19 PRK14082 hypothetical protein; 27.7 64 0.0014 22.9 2.5 10 70-79 54-63 (65)
20 PRK13611 photosystem II reacti 26.6 2.9E+02 0.0062 21.5 6.2 56 102-161 14-70 (104)
21 PRK14145 heat shock protein Gr 26.6 2.3E+02 0.005 24.4 6.3 63 3-69 27-89 (196)
22 TIGR00963 secA preprotein tran 26.2 1.4E+02 0.0031 31.0 5.7 47 26-72 549-595 (745)
23 PF12998 ING: Inhibitor of gro 25.7 1.4E+02 0.0031 22.0 4.4 65 14-82 8-75 (105)
24 PF05600 DUF773: Protein of un 24.9 2.6E+02 0.0057 27.6 7.2 68 21-88 127-201 (507)
25 TIGR03714 secA2 accessory Sec 24.4 1.8E+02 0.0038 30.4 6.0 46 27-72 574-619 (762)
26 PRK02539 hypothetical protein; 23.4 1.7E+02 0.0037 22.0 4.2 43 20-63 2-44 (85)
27 PRK12326 preprotein translocas 23.1 1.9E+02 0.004 30.2 5.8 46 27-72 576-621 (764)
28 PRK12904 preprotein translocas 22.7 2E+02 0.0043 30.3 6.1 46 27-72 606-651 (830)
29 PRK15422 septal ring assembly 22.6 2.4E+02 0.0052 20.8 4.8 31 14-44 4-34 (79)
30 PRK12902 secA preprotein trans 22.4 2E+02 0.0043 30.7 5.9 46 27-72 721-766 (939)
31 PF07361 Cytochrom_B562: Cytoc 22.3 3.5E+02 0.0076 20.6 6.1 40 21-60 53-103 (103)
32 PF08770 SoxZ: Sulphur oxidati 22.3 63 0.0014 24.7 1.8 49 80-130 19-71 (100)
33 PRK12903 secA preprotein trans 21.6 2.2E+02 0.0048 30.3 6.1 46 27-72 570-615 (925)
34 PRK12906 secA preprotein trans 21.4 2.2E+02 0.0047 29.9 6.0 46 27-72 587-632 (796)
35 KOG3320 40S ribosomal protein 21.1 25 0.00055 30.0 -0.6 32 1-32 1-32 (192)
36 PRK09200 preprotein translocas 21.0 2.2E+02 0.0048 29.8 6.0 48 26-73 576-623 (790)
37 PF06005 DUF904: Protein of un 20.7 3.3E+02 0.0072 19.5 5.5 28 16-43 6-33 (72)
38 PRK13103 secA preprotein trans 20.6 2.3E+02 0.005 30.2 6.1 46 27-72 624-669 (913)
39 PRK11546 zraP zinc resistance 20.1 2.8E+02 0.0061 22.8 5.3 38 15-69 40-77 (143)
No 1
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=100.00 E-value=2.2e-58 Score=421.12 Aligned_cols=219 Identities=30% Similarity=0.593 Sum_probs=191.0
Q ss_pred ccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc----------ccchhhHH
Q 025790 10 KVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLT 79 (248)
Q Consensus 10 ~~~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~----------~IP~FW~~ 79 (248)
..+++++..||+.++.++.+|+.||.++..++.++++++++|+++|.++++|+|++|++||+ +||+||++
T Consensus 26 ~~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl~ 105 (337)
T PTZ00007 26 ELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWLT 105 (337)
T ss_pred ccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHHH
Confidence 34557788999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred HHhhhhhhccccCcchHHhhcCcceeEEEEccCCC-cceEEEEEecCCCccccCeEEEEEEeeCCC---CCe--eeeecc
Q 025790 80 AFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GSM--KITATS 153 (248)
Q Consensus 80 vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~-~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~---g~~--~~~~t~ 153 (248)
||+||+.++.+|+++|++||+||+||+|++..+.. .||+|+|+|++||||+|++|+|+|++...+ |+. .+++|+
T Consensus 106 vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t~ 185 (337)
T PTZ00007 106 AMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVATE 185 (337)
T ss_pred HHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceeee
Confidence 99999999999999999999999999999887654 899999999999999999999999996423 332 468999
Q ss_pred ccccCCCCCCCccccccCCCC-----c----cccccccccccccCCCCCCc-----C-----------CchHHHHHHHhh
Q 025790 154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTI-----D-----------GIQDEVAEIIKE 208 (248)
Q Consensus 154 I~Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~fF~~~~~~~~~-----~-----------~~d~ei~~~i~~ 208 (248)
|+||+||++|++...+|++++ | +.+..|||+||+++..++.. + +.|++||++|++
T Consensus 186 I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ikd 265 (337)
T PTZ00007 186 IDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIRD 265 (337)
T ss_pred ceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHHH
Confidence 999999999998766554332 2 34678999999998766321 1 147799999999
Q ss_pred ccccchhhhhccCCCCcccc
Q 025790 209 DLWPNPLTYFNNEADEEEFE 228 (248)
Q Consensus 209 ~i~p~av~yf~~~~~~~~~~ 228 (248)
+|||+||.||+|++.+++.+
T Consensus 266 ~IIP~AV~yftGea~d~~~~ 285 (337)
T PTZ00007 266 KLIPYAVYWFLGEAIDEDSD 285 (337)
T ss_pred hcccccHHhhCCCccccccc
Confidence 99999999999997765553
No 2
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.6e-58 Score=410.87 Aligned_cols=217 Identities=32% Similarity=0.620 Sum_probs=191.2
Q ss_pred chhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhh---------------------
Q 025790 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------------- 70 (248)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI--------------------- 70 (248)
..+++..||+.|++||.+|+.||.+.+.++.+|.+++++||+||.++++|||++|++||
T Consensus 64 ~s~~v~~Lp~~Vk~Rv~aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~ 143 (358)
T KOG1507|consen 64 LSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEG 143 (358)
T ss_pred CchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCccccccccccccccc
Confidence 34788999999999999999999999999999999999999999999999999999999
Q ss_pred --------------cccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEE
Q 025790 71 --------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTK 136 (248)
Q Consensus 71 --------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K 136 (248)
+|||+||+|||+|+++++++|+++|++||+||+||++.+.+++..||+|.|+|++||||+|++|||
T Consensus 144 ~~~e~~~~~~~~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTK 223 (358)
T KOG1507|consen 144 NLAEDTEEAEKEDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTK 223 (358)
T ss_pred ccccchhhhccccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceee
Confidence 269999999999999999999999999999999999999988679999999999999999999999
Q ss_pred EEEee---CCCCC------e--eeeeccccccCCCCCCCccccccCCC-----C----ccccccccccccccCCCCCCc-
Q 025790 137 TFTFL---DDDGS------M--KITATSIKWKEGMGIPNGVNHEKKGN-----K----RPLAEESFFTWFSDTQEKDTI- 195 (248)
Q Consensus 137 ~~~~~---~~~g~------~--~~~~t~I~Wk~gk~~t~~~~~~k~~~-----~----r~~~~~SFF~fF~~~~~~~~~- 195 (248)
+|++. +.+++ . .|+||.|+|++|||+|.+...+|+++ . ++++..||||||+++..++..
T Consensus 224 TY~l~~~~D~~~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~~d 303 (358)
T KOG1507|consen 224 TYFLKSEPDEDDPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDEED 303 (358)
T ss_pred eeeeeccCCCcCCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcccc
Confidence 99998 32333 3 36999999999999999876554322 1 246889999999999988322
Q ss_pred -CC--------chHHHHHHHhhccccchhhhhccCCCCcccc
Q 025790 196 -DG--------IQDEVAEIIKEDLWPNPLTYFNNEADEEEFE 228 (248)
Q Consensus 196 -~~--------~d~ei~~~i~~~i~p~av~yf~~~~~~~~~~ 228 (248)
++ .|++||+.||+.|+|.||.||+|++.+++++
T Consensus 304 ~Ded~~~~~L~~DyeIG~~lr~~IIPrAV~~fTGea~e~~~~ 345 (358)
T KOG1507|consen 304 LDEDDLEELLELDYEIGETLRDKIIPRAVLWFTGEALEDEDD 345 (358)
T ss_pred cCchHHHHHHHhhHHHHHHHHhhhhhheeeeecccccccccc
Confidence 11 4699999999999999999999997555443
No 3
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=100.00 E-value=3e-54 Score=366.18 Aligned_cols=181 Identities=29% Similarity=0.597 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceE
Q 025790 39 KINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYS 118 (248)
Q Consensus 39 ~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~ 118 (248)
+|+.++.+|+++|+++|+++++|+|++|++||++||+||++||+|||.++ +|++.|+++|+||+||+|+...+++.||+
T Consensus 2 ~l~~e~~~e~~~le~ky~~~~~p~y~kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~ 80 (185)
T PTZ00008 2 ELDEECAKEQMNIQRQFDEKKKPLFEKRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYK 80 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEE
Confidence 47889999999999999999999999999999999999999999999999 99999999999999999997555578999
Q ss_pred EEEEecC--CCccccCeEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCCccccccccccccccCCCCCCcC
Q 025790 119 ITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTID 196 (248)
Q Consensus 119 l~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~fF~~~~~~~~~~ 196 (248)
|+|+|++ ||||+|++|+|+|++.. +++.++++|+|+||+|+|+|.+..+++...++..+..|||+||+++..+
T Consensus 81 i~F~F~~~~N~yF~n~~LtK~y~~~~-~~~~~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~---- 155 (185)
T PTZ00008 81 ITLIFDEKAKEFMEPLVLVKHVIFKN-NQEKVVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQ---- 155 (185)
T ss_pred EEEEECCCCCCCcCCCEEEEEEEEec-CCCceeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCccc----
Confidence 9999965 89999999999999987 6667889999999999999987655433233456779999999987543
Q ss_pred CchHHHHHHHhhccccchhhhhccCCCCcc
Q 025790 197 GIQDEVAEIIKEDLWPNPLTYFNNEADEEE 226 (248)
Q Consensus 197 ~~d~ei~~~i~~~i~p~av~yf~~~~~~~~ 226 (248)
.+++||++|+++|||+||+||+|++.+++
T Consensus 156 -~~~eIg~~i~e~i~P~av~yy~ge~~~~~ 184 (185)
T PTZ00008 156 -DRPDVGEIIRREIWHAPLLYYLDTVSIDD 184 (185)
T ss_pred -CcHHHHHHHHHhhccchHHhhCCcccccc
Confidence 57999999999999999999999876654
No 4
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=100.00 E-value=4.8e-53 Score=373.60 Aligned_cols=198 Identities=41% Similarity=0.779 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc-------------------cchhhHHHHhhh
Q 025790 24 VLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS-------------------IPDFWLTAFISH 84 (248)
Q Consensus 24 ~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~-------------------IP~FW~~vl~n~ 84 (248)
++++.+|+.||.+++.++.++.+++++|+++|+++++|+|++|++||++ ||+||++||.||
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~~pl~~kR~~ii~g~~~~~~~~~~~~~~~~~~gIP~FW~~vl~n~ 80 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLYKPLYEKRREIINGKREPTEIEWEERQEEKPKGIPGFWLTVLKNH 80 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHH-----SSSTTSTTHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccccccccccccchhhccccCCCCccccccccC
Confidence 4789999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCC------eeeeeccccccC
Q 025790 85 PALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGS------MKITATSIKWKE 158 (248)
Q Consensus 85 ~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~------~~~~~t~I~Wk~ 158 (248)
+.++.+|++.|.++|+||+||+|++..++..+|+|+|+|++||||+|++|+|+|++.. .+. .++++|+|+||+
T Consensus 81 ~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~-~~~~~~~~~~~~~~t~I~Wk~ 159 (244)
T PF00956_consen 81 PLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKK-EGDEEDPDELKSESTPIDWKP 159 (244)
T ss_dssp HHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEES-SSSTTTT-EEEEEE---EBST
T ss_pred chhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEec-cCCCCCCCcceeeeecccccC
Confidence 9999999999999999999999999988789999999999999999999999999988 443 789999999999
Q ss_pred CCCCCCccccccCCCC---------ccccccccccccccCCCCCCc----C--------CchHHHHHHHhhccccchhhh
Q 025790 159 GMGIPNGVNHEKKGNK---------RPLAEESFFTWFSDTQEKDTI----D--------GIQDEVAEIIKEDLWPNPLTY 217 (248)
Q Consensus 159 gk~~t~~~~~~k~~~~---------r~~~~~SFF~fF~~~~~~~~~----~--------~~d~ei~~~i~~~i~p~av~y 217 (248)
|+++|.+...++++.+ .....+|||+||+++..+++. + ..+++||++|+++|||+||.|
T Consensus 160 gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~e~~~~~~~~~~~~d~ei~~~i~d~i~P~av~y 239 (244)
T PF00956_consen 160 GKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDDEEEDEDEEEEIEDDFEIGEIIKDDIIPNAVKY 239 (244)
T ss_dssp TTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTSSSTCHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred CCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCcccccccchhhHHHHhhccHHHHHHHHhheechHHHH
Confidence 9999988765543221 234668999999977554211 1 147899999999999999999
Q ss_pred hccCC
Q 025790 218 FNNEA 222 (248)
Q Consensus 218 f~~~~ 222 (248)
|+|++
T Consensus 240 y~gea 244 (244)
T PF00956_consen 240 YTGEA 244 (244)
T ss_dssp HHTCT
T ss_pred hCCCC
Confidence 99975
No 5
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-33 Score=250.50 Aligned_cols=208 Identities=45% Similarity=0.834 Sum_probs=185.6
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcc
Q 025790 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEE 94 (248)
Q Consensus 15 ~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~ 94 (248)
-+...+.+++.+++.|++||.+++.++++..+++++++++|...++|+|++|+.||+.||+||.+++.|||.++.+|...
T Consensus 22 ~l~~~~~~~~~~~~~l~~i~~e~~~~~~~a~~~~l~l~~~~~~~r~p~~~~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~ 101 (260)
T KOG1508|consen 22 HLSRRGREIEEALETLENIQHELDRMNAKAEVEVLKLEQKFNRFRRPVYEKRRELIKEIPNFWVTAFLNHPTLSEWIPEE 101 (260)
T ss_pred ccccchhHHHhhhHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhCchhhhhhHHHhhcccceeEEEecCCcHhhhhhhh
Confidence 34557788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCC
Q 025790 95 DQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK 174 (248)
Q Consensus 95 D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~ 174 (248)
|.+++.||..+.|+.+.+...||++.|+|.+||||+|.+++|+|.+.. .|.+++.+|+|.|+.|+++........-+++
T Consensus 102 ~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~-~~~~~s~~t~i~w~~~~~~~~~~~~~~~~~k 180 (260)
T KOG1508|consen 102 DEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKE-SGKPSSESTPISWKEGKPLPNPVKRGELKNK 180 (260)
T ss_pred hhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeec-ccCcccccccccccCCCCCcccccccccccc
Confidence 999999999999999998899999999999999999999999999998 7888899999999999998765442212233
Q ss_pred ccccccccccccccCCCCCCcCCchHHHHHHHhhccccchhhhhccCCCCcccc
Q 025790 175 RPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFE 228 (248)
Q Consensus 175 r~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~~~~~~~~~ 228 (248)
+.....|||.||+.+..++ .++|+++|++.+||++++||+..+++...+
T Consensus 181 ~~~~~~s~f~wf~~~~~~~-----~d~i~ei~~~~~~~~~~~~~~~~~~~~~~~ 229 (260)
T KOG1508|consen 181 NGDGPKSFFEWFSDTSLKE-----FDEILEIIKDELWPNPLQYYLEPDGEEASE 229 (260)
T ss_pred cCcccccHHHHHHhccCCC-----ccchhhhhhcccccchhhhhcccccccccc
Confidence 4456689999999998774 348999999999999999999776544433
No 6
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=95.46 E-value=0.053 Score=36.28 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 025790 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (248)
Q Consensus 30 L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR 66 (248)
+..||..+..|..++.+|+-++.+.|..+++|+.+.-
T Consensus 10 ~~eL~~rl~~LD~~ME~Eieelr~RY~~KRqPIldAi 46 (49)
T PF11629_consen 10 YEELQQRLASLDPEMEQEIEELRQRYQAKRQPILDAI 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 5678899999999999999999999999999998653
No 7
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=90.47 E-value=1 Score=36.91 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchh
Q 025790 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (248)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~F 76 (248)
.++-.++..+.++|.++..++..+..++-++...|.....|+-.+...+-..|-.|
T Consensus 3 ~~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 3 EEADWALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999999998877766666555
No 8
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=86.06 E-value=1.6 Score=35.73 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhh
Q 025790 17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFW 77 (248)
Q Consensus 17 ~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW 77 (248)
..--.+|...|..|-+||.+...|+.++..++-+++..|..+..|+-+.-..+-++|..|.
T Consensus 14 ~q~~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC 74 (170)
T COG4396 14 AQDKEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC 74 (170)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445678899999999999999999999999999999999999999988777777777764
No 9
>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner. This domain is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.; GO: 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 2IPC_D 3JUX_A 3DIN_B ....
Probab=64.53 E-value=22 Score=30.56 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 28 ~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
.++...|+..+..+-...+.+++...--+.+++-+|..|+.|+.+
T Consensus 9 ~~Ie~aQkkvE~~nf~~Rk~lleyD~Vl~~QR~~IY~~R~~iL~~ 53 (214)
T PF07516_consen 9 KSIEKAQKKVEGRNFDIRKNLLEYDDVLNQQRKVIYKQRDKILEG 53 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567778999999999999999999999999999999999999975
No 10
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]
Probab=59.24 E-value=0.23 Score=44.68 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=81.8
Q ss_pred hhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEe
Q 025790 61 PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTF 140 (248)
Q Consensus 61 Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~ 140 (248)
|...+|...++.++++|..+-.....+. -..+..+|+ ..++-..|..|+|+++..|+|+|.-
T Consensus 21 ~~l~~~~~~~~~~~~~l~~i~~e~~~~~---~~a~~~~l~---------------l~~~~~~~r~p~~~~r~~ii~~i~~ 82 (260)
T KOG1508|consen 21 EHLSRRGREIEEALETLENIQHELDRMN---AKAEVEVLK---------------LEQKFNRFRRPVYEKRRELIKEIPN 82 (260)
T ss_pred cccccchhHHHhhhHHHHHHHHHhhhhh---hhhHHHHHH---------------HHHHHHhhhCchhhhhhHHHhhccc
Confidence 7888999999999999987653332222 122222221 1122344678999999999999742
Q ss_pred eCCCCC-eeeeeccccccCCCCCCCccccccCCCCccccccccccccccCCCCCCcCCchHHHHHHHhhccccchhhhhc
Q 025790 141 LDDDGS-MKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFN 219 (248)
Q Consensus 141 ~~~~g~-~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~ 219 (248)
.. +. ....++.+.|-.+.+......- .......|+++++..... .-+++...+.+.+|-+.++|+.
T Consensus 83 fw--~~~~~~hp~~~~~i~~~~~e~~~~l------~~~~v~e~~~~~sg~~~~-----~~f~~ney~~~~~~~ke~~~~~ 149 (260)
T KOG1508|consen 83 FW--VTAFLNHPTLSEWIPEEDEEALHYL------HNLEVEELGDIKSGYRIK-----FSFEINEYFTNDLLVKEFQYKE 149 (260)
T ss_pred ce--eEEEecCCcHhhhhhhhhhhhhccc------hHHHHHHhccccccCeee-----eeeccchhcccchhceeeeeec
Confidence 11 11 2347788888877654332100 012334567777766533 3456777888999999999888
Q ss_pred cCC
Q 025790 220 NEA 222 (248)
Q Consensus 220 ~~~ 222 (248)
...
T Consensus 150 ~~~ 152 (260)
T KOG1508|consen 150 SGK 152 (260)
T ss_pred ccC
Confidence 755
No 11
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=42.21 E-value=1.4e+02 Score=24.75 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc--------ccchh
Q 025790 19 IDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDF 76 (248)
Q Consensus 19 ~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~--------~IP~F 76 (248)
+.|.+.+++..|+. |-=+..++++..+ --+|...|.+.+.-+..+|++|.. ++|++
T Consensus 55 t~P~L~kaaSrLEs-~gymkem~erl~~-d~eL~~~~~raHe~~lkkR~~i~~~~t~~~~gGm~D~ 118 (167)
T COG1507 55 THPVLTKAASRLES-TGYMKEMTERLGQ-DEELRAFYRRAHESYLKKRDAIEPLGTTVSGGGMPDR 118 (167)
T ss_pred cChHHHHHHHHHHH-hhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHhhcccCCeecCCCcchH
Confidence 34677777777642 2222222222211 135778899999999999999984 68888
No 12
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=42.15 E-value=36 Score=31.95 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR 66 (248)
.-.|.+||..+-.+.-...+++.+|.++|..+++|+|..-
T Consensus 453 ~~~~e~Lq~rl~alDpmme~eieelrq~y~skrqpIldai 492 (502)
T KOG0574|consen 453 NITLEELQMRLKALDPMMEREIEELRQRYTSKRQPILDAI 492 (502)
T ss_pred hccHHHHHHHHHhcCHHHHHHHHHHHHHHhhccccHHHHh
Confidence 3467889999999999999999999999999999999653
No 13
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.82 E-value=55 Score=30.90 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=57.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc--------ccchhhHHHHhhhhhhc
Q 025790 17 EQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK--------SIPDFWLTAFISHPALG 88 (248)
Q Consensus 17 ~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~--------~IP~FW~~vl~n~~~l~ 88 (248)
..++|.+-+.+++..+.|......-.-|.+=-+..-+| .--+=+.|.-+++ .+-+||..+-+....|+
T Consensus 174 qELDPdt~k~meKFRkaQt~Vr~aK~nfDklkmD~~QK----VDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ 249 (436)
T KOG3891|consen 174 QELDPDTDKQMEKFRKAQTQVRSAKENFDKLKMDVCQK----VDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIH 249 (436)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHhccchhhhHHHHH----HhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888999999999987765554444322222222 2223445555554 46799999887777776
Q ss_pred ccc---CcchHHhhcCcceeE
Q 025790 89 ELL---SEEDQKIFRYLSSLE 106 (248)
Q Consensus 89 ~~i---~~~D~~iL~~L~dI~ 106 (248)
+.+ .+.|..+|++|.+=.
T Consensus 250 ea~~~y~~YdF~~Lk~L~~~~ 270 (436)
T KOG3891|consen 250 EACIGYNPYDFEILKHLQDGT 270 (436)
T ss_pred HHhcCCCccchHHHHHhccCC
Confidence 554 489999999998644
No 14
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.74 E-value=1.1e+02 Score=23.01 Aligned_cols=55 Identities=9% Similarity=0.364 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccch
Q 025790 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (248)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~ 75 (248)
+.......++..++..+..++.+.......+...|..++.-+-+++..++..|..
T Consensus 14 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 14 KKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667777777788888888889999999998888888888865543
No 15
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=31.37 E-value=59 Score=29.83 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=25.4
Q ss_pred HHHHHHhhchhHHhhhhhhcc---cchhhHHHHhhhhh
Q 025790 52 EQKYSEIRKPVYDKRNDIIKS---IPDFWLTAFISHPA 86 (248)
Q Consensus 52 e~ky~~~~~Ply~kR~eiI~~---IP~FW~~vl~n~~~ 86 (248)
-..+.+.++|+.++--+-..+ ...||.++..-++.
T Consensus 164 ~~~w~~~L~pIl~~fi~s~~~~~~~~~FW~~i~~~~~~ 201 (299)
T PF14388_consen 164 MEWWASLLRPILDRFIASFDGPPEDKDFWNRIVHYESG 201 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhcccCC
Confidence 356778889999776665554 45899998877654
No 16
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=28.93 E-value=21 Score=22.68 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=11.8
Q ss_pred eeccccccCCCCCC
Q 025790 150 TATSIKWKEGMGIP 163 (248)
Q Consensus 150 ~~t~I~Wk~gk~~t 163 (248)
..|+.+|++|.++.
T Consensus 10 v~tPanW~pGd~~i 23 (40)
T PF10417_consen 10 VATPANWKPGDDVI 23 (40)
T ss_dssp SBBCTTTCTTSGEB
T ss_pred cccCcCCCCCCCeE
Confidence 57999999998854
No 17
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.08 E-value=1.6e+02 Score=26.67 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=22.8
Q ss_pred hchhHHhhhhhh--cccchhhHHHHhhhhhhccccC
Q 025790 59 RKPVYDKRNDII--KSIPDFWLTAFISHPALGELLS 92 (248)
Q Consensus 59 ~~Ply~kR~eiI--~~IP~FW~~vl~n~~~l~~~i~ 92 (248)
++-+|.+|..-+ .|=..+...|+.++.-|+.+|+
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~Is 134 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLIS 134 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHH
Confidence 344555554433 3555667899999888888876
No 18
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.77 E-value=2.3e+02 Score=20.55 Aligned_cols=65 Identities=17% Similarity=0.370 Sum_probs=38.3
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHH
Q 025790 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAF 81 (248)
Q Consensus 15 ~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl 81 (248)
..+.+...++++++.+.-||-+++.|-++... +.-+..-....+.-+.++++-++.-..=|..-+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~--l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNS--LSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778999999999999999888655431 111111112233344555555555555565443
No 19
>PRK14082 hypothetical protein; Provisional
Probab=27.67 E-value=64 Score=22.92 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.4
Q ss_pred hcccchhhHH
Q 025790 70 IKSIPDFWLT 79 (248)
Q Consensus 70 I~~IP~FW~~ 79 (248)
...+|+||--
T Consensus 54 ~~e~PGF~ef 63 (65)
T PRK14082 54 CQEVPGFWEF 63 (65)
T ss_pred cccCCcHHHh
Confidence 3578999953
No 20
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=26.58 E-value=2.9e+02 Score=21.51 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=38.7
Q ss_pred cceeEEEEccCCCcceEEEEEec-CCCccccCeEEEEEEeeCCCCCeeeeeccccccCCCC
Q 025790 102 LSSLEVEDFKDVKSGYSITFNFS-PNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMG 161 (248)
Q Consensus 102 L~dI~Ve~~~d~~~~f~l~F~F~-~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~ 161 (248)
+.+|++....+ ...=+.+|.|. |+. ....++- .++.+.+|..++.....+.-.|+.
T Consensus 14 ~p~VrLtRsrd-g~~g~a~f~F~~~~~--~~~~itg-m~liDeEGei~tr~v~~KFvnGkp 70 (104)
T PRK13611 14 PTQVRLLKSKT-GKRGSAIFRFEDLKS--DTQNILG-MRMIDEEGELTTRNIKAKFLNGEF 70 (104)
T ss_pred CCceEEEEccC-CCccEEEEEEcCCcc--cccceee-EEEEccCCcEEEEecceEEECCCc
Confidence 78999998876 45567899994 566 3356676 444444898776666666667764
No 21
>PRK14145 heat shock protein GrpE; Provisional
Probab=26.56 E-value=2.3e+02 Score=24.45 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCcccccccchhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhh
Q 025790 3 ADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDI 69 (248)
Q Consensus 3 ~~~~~~~~~~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~ei 69 (248)
+|+.--+-.+.......+.++...-..|..++.++..+..++ +.+...+...++-.-..|.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~e~~~l~~~l~~le~e~~el~d~~----lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 27 GPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIA----QRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred CCcHHHHHhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344333333333334444444444445555566665555444 334444443333333344333
No 22
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=26.25 E-value=1.4e+02 Score=31.00 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 26 ~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
.-..+...|+..+..+-...+.+++...--+.+++-+|+.|++++.+
T Consensus 549 ~~~~~~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iY~~R~~il~~ 595 (745)
T TIGR00963 549 VTRALESAQKRVEARNFDIRKQLLEYDDVLNKQREVIYAERRRILES 595 (745)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcc
Confidence 34567778999999999999999999999999999999999999964
No 23
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=25.69 E-value=1.4e+02 Score=22.01 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=40.0
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---hHHhhhhhhcccchhhHHHHh
Q 025790 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP---VYDKRNDIIKSIPDFWLTAFI 82 (248)
Q Consensus 14 e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~P---ly~kR~eiI~~IP~FW~~vl~ 82 (248)
|.++.+|.+++..+..+..+..+...+-.+ +.+.-.+|.+.... -=.++..++..|-.=+..++.
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~ 75 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEE----LDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALE 75 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999998887775544433 33344444443322 112666677777666665553
No 24
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=24.92 E-value=2.6e+02 Score=27.60 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-------HHhhhhhhcccchhhHHHHhhhhhhc
Q 025790 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPV-------YDKRNDIIKSIPDFWLTAFISHPALG 88 (248)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Pl-------y~kR~eiI~~IP~FW~~vl~n~~~l~ 88 (248)
|.+++.+.++...+.++.+-+.++.+-....+.+|.+.++-+ -.+-.++++.+|.++..+......+.
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i~~l~ 201 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAISDLQ 201 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 557788888888889999999899888888888888876543 22223345678888877776554443
No 25
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=24.37 E-value=1.8e+02 Score=30.40 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-.++...|+..+..+-...+.+++...--+.+++-+|++|++++.+
T Consensus 574 ~~~i~~aQ~~~e~~~~~~Rk~~~~~d~v~~~QR~~iy~~R~~il~~ 619 (762)
T TIGR03714 574 RKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEG 619 (762)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5567778999999999999999999999999999999999999965
No 26
>PRK02539 hypothetical protein; Provisional
Probab=23.42 E-value=1.7e+02 Score=21.95 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 025790 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (248)
Q Consensus 20 ~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply 63 (248)
+.++..+|..|...++. ..|..+-..|..+|++.|-+..+--+
T Consensus 2 ~~~~I~RINeLakK~K~-~gLT~eEk~Eq~~LR~eYl~~fR~~~ 44 (85)
T PRK02539 2 DPKKIARINELAKKKKT-EGLTGEEKVEQAKLREEYIEGYRRSV 44 (85)
T ss_pred CHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999998886 44555556677778888776555333
No 27
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=23.13 E-value=1.9e+02 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-.++...|+..+..+-...+.+++...--+.+++-+|++|+.++.+
T Consensus 576 ~~~i~~aQk~vE~~~~~~Rk~~~~yd~v~~~QR~~iy~~R~~il~~ 621 (764)
T PRK12326 576 ADLVDHAQRVAEGQLLEIHANTWRYNQLIAQQRAIIVERRERLLRT 621 (764)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556678999999999999999999999999999999999999964
No 28
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=22.70 E-value=2e+02 Score=30.33 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 606 ~~~i~~aQ~~~e~~~~~~Rk~~l~yd~v~~~QR~~iY~~R~~iL~~ 651 (830)
T PRK12904 606 TRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEG 651 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566678999999999999999999999999999999999999965
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.60 E-value=2.4e+02 Score=20.83 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=25.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025790 14 ENAEQIDSELVLSIEKLQEIQDELEKINEEA 44 (248)
Q Consensus 14 e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~ 44 (248)
|....+...|+.+|+.+.-||-+++.+..+.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999887653
No 30
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=22.37 E-value=2e+02 Score=30.74 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-.+|...|+..+..+-...+.+++...--+.+++-+|..|+.++.+
T Consensus 721 ~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~ 766 (939)
T PRK12902 721 TRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEG 766 (939)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567778999999999999999999999999999999999999964
No 31
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=22.35 E-value=3.5e+02 Score=20.58 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhc
Q 025790 21 SELVLSIEKLQEIQDELEKINEEA-----------SEKVLEVEQKYSEIRK 60 (248)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~e~-----------~~e~~~le~ky~~~~~ 60 (248)
+++..-...|..|+.+++.++... .+++..++.+|++.++
T Consensus 53 ~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~r 103 (103)
T PF07361_consen 53 AEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEYHKKFR 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhcC
Confidence 344455666666666666665433 3466677777877653
No 32
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=22.27 E-value=63 Score=24.68 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=22.2
Q ss_pred HHhhhhhhccccCcchHHh--hcCcceeEEEEccCCCcceEEEEEe--cCCCccc
Q 025790 80 AFISHPALGELLSEEDQKI--FRYLSSLEVEDFKDVKSGYSITFNF--SPNPYFE 130 (248)
Q Consensus 80 vl~n~~~l~~~i~~~D~~i--L~~L~dI~Ve~~~d~~~~f~l~F~F--~~NpyF~ 130 (248)
+|..||+-+-+-.+.+-.. -.|++.|.|.... ..-+++.+.. ++||||+
T Consensus 19 ~li~HPMetGl~~d~tg~~iPa~~I~~v~v~~ng--~~v~~~~~~~siS~NP~l~ 71 (100)
T PF08770_consen 19 ALISHPMETGLRKDQTGKYIPAHFIEEVEVTYNG--KPVFRADWGPSISENPYLR 71 (100)
T ss_dssp EEE----B-S-BB-TTS-BB--B-EEEEEEEETT--EEEEEEEE-TTB-SS-EEE
T ss_pred EEEECCCccccccCCCCCCCChHheEEEEEEECC--EEEEEEEeCCcccCCCcEE
Confidence 4556776544432222222 3799999999653 4455555555 6899985
No 33
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=21.58 E-value=2.2e+02 Score=30.34 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-.++...|+..+..+-...+.+++...--+.+++-+|.+|++++.+
T Consensus 570 ~~~ie~AQkkvE~~nfdiRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 615 (925)
T PRK12903 570 SKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIA 615 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567778999999999999999999999999999999999999964
No 34
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=21.44 E-value=2.2e+02 Score=29.91 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-..+...|+..+..+-...+.+++...--+.+++-+|.+|+.++.+
T Consensus 587 ~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~il~~ 632 (796)
T PRK12906 587 TRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINE 632 (796)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566678999999999999999999999999999999999999976
No 35
>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=25 Score=29.95 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCCCcccccccchhhccCCCHHHHHHHHHHHH
Q 025790 1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQE 32 (248)
Q Consensus 1 ~~~~~~~~~~~~~e~~~~~~~~v~~~i~~L~~ 32 (248)
|.+..+|..|.++.....+...+.+++-.|+.
T Consensus 1 m~s~~~Ki~k~~~~~ptE~E~~iaqal~~le~ 32 (192)
T KOG3320|consen 1 MFSSQAKIHKPSGSKPTEFEMQIAQALLDLEM 32 (192)
T ss_pred CccccccccCCCCCCchHHHHHHHHHHHHHHh
Confidence 77888999999977777777777777766654
No 36
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=20.99 E-value=2.2e+02 Score=29.81 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccc
Q 025790 26 SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSI 73 (248)
Q Consensus 26 ~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~I 73 (248)
....|...|+..+..+-...+.+++...--+.+++-+|..|+.++.+-
T Consensus 576 ~~~~~~~aQ~~~e~~~~~~R~~~~~~d~~~~~QR~~iy~~R~~~l~~~ 623 (790)
T PRK09200 576 VHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEED 623 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455677789999999999999999999999999999999999999754
No 37
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.71 E-value=3.3e+02 Score=19.53 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 025790 16 AEQIDSELVLSIEKLQEIQDELEKINEE 43 (248)
Q Consensus 16 ~~~~~~~v~~~i~~L~~lQ~e~~~le~e 43 (248)
...+...+..+|+.+..||.++..+..+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999988765
No 38
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=20.61 E-value=2.3e+02 Score=30.19 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
-..+...|+..+..+-...+.+++...--+++++-+|.+|+.++.+
T Consensus 624 ~~~i~~aQk~vE~~~~~~Rk~ll~yD~Vln~QR~~IY~~R~~iL~~ 669 (913)
T PRK13103 624 TNAIEKAQRKVEGRNFDIRKQLLEFDDVANEQRKVIYHMRNSLLAA 669 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566778999999999999999999999999999999999999965
No 39
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.07 E-value=2.8e+02 Score=22.77 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhh
Q 025790 15 NAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDI 69 (248)
Q Consensus 15 ~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~ei 69 (248)
+...++++. |..++.+..+|..++..|+++ ++.+|.++
T Consensus 40 ~~~~LT~EQ----------Qa~~q~I~~~f~~~t~~LRqq-------L~aKr~EL 77 (143)
T PRK11546 40 NAAPLTTEQ----------QAAWQKIHNDFYAQTSALRQQ-------LVSKRYEY 77 (143)
T ss_pred ccccCCHHH----------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Done!