Query 025790
Match_columns 248
No_of_seqs 127 out of 599
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e50_A Protein SET; histone ch 100.0 2.4E-62 8.4E-67 426.6 15.5 215 1-221 1-223 (225)
2 3fs3_A Nucleosome assembly pro 100.0 7.7E-59 2.6E-63 425.0 19.4 220 12-231 40-302 (359)
3 2ayu_A Nucleosome assembly pro 100.0 6.4E-58 2.2E-62 428.2 17.7 212 12-223 81-365 (417)
4 3kyp_A Pfnaps, nucleosome asse 100.0 8.6E-58 3E-62 389.8 11.3 189 27-222 2-192 (193)
5 2zd7_A VPS75, vacuolar protein 100.0 2.8E-53 9.4E-58 377.5 15.8 195 29-223 10-221 (264)
6 2jo8_A Serine/threonine-protei 93.4 0.19 6.7E-06 33.0 5.5 37 30-66 12-48 (51)
7 2p2u_A HOST-nuclease inhibitor 90.0 0.63 2.2E-05 38.0 6.3 59 18-76 13-71 (171)
8 2zd7_A VPS75, vacuolar protein 61.6 17 0.00059 31.4 6.5 45 21-65 9-53 (264)
9 3jux_A Protein translocase sub 26.8 99 0.0034 31.0 6.1 45 28-72 621-665 (822)
10 2fzt_A Hypothetical protein TM 26.1 57 0.0019 22.9 3.1 25 51-75 15-39 (79)
11 3bhp_A UPF0291 protein YNZC; N 26.0 1E+02 0.0035 20.6 4.3 43 20-63 3-45 (60)
12 1nkt_A Preprotein translocase 23.6 1.2E+02 0.0043 30.8 6.3 45 28-72 651-695 (922)
13 2fsf_A Preprotein translocase 23.6 1.2E+02 0.0041 30.6 6.1 45 28-72 617-661 (853)
14 2jvd_A UPF0291 protein YNZC; s 23.4 83 0.0028 20.6 3.4 41 20-61 3-43 (54)
15 3twe_A Alpha4H; unknown functi 22.8 1E+02 0.0035 16.8 3.5 18 26-43 6-23 (27)
16 1tf5_A Preprotein translocase 21.7 1.4E+02 0.0049 30.0 6.3 44 29-72 580-623 (844)
17 2ipc_A Preprotein translocase 21.1 1.5E+02 0.0052 30.4 6.3 45 28-72 732-776 (997)
18 2zqm_A Prefoldin beta subunit 20.4 2.4E+02 0.0083 20.1 6.2 27 18-44 3-29 (117)
No 1
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=100.00 E-value=2.4e-62 Score=426.57 Aligned_cols=215 Identities=42% Similarity=0.828 Sum_probs=175.6
Q ss_pred CCCCcccccccchhh-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccch
Q 025790 1 MVADKGKKTKVEEEN-----AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD 75 (248)
Q Consensus 1 ~~~~~~~~~~~~~e~-----~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~ 75 (248)
|++|++|++|+.++. ...++++++.+|.+|+.||.+++.+++++++|+++|+++|+++++|+|++|++||++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~ 80 (225)
T 2e50_A 1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN 80 (225)
T ss_dssp CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence 889999999998864 457889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCccccCeEEEEEEeeCCCCCeeeeecccc
Q 025790 76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK 155 (248)
Q Consensus 76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~ 155 (248)
||++||+||+.++.+|++.|+++|+||+||+|++.++++.||+|+|+|++||||+|++|+|+|++.. +|++++++|+|+
T Consensus 81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~ 159 (225)
T 2e50_A 81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK 159 (225)
T ss_dssp HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence 9999999999999999999999999999999999988789999999999999999999999999988 888889999999
Q ss_pred ccCCCCCCCcccccc--CCCCcc-ccccccccccccCCCCCCcCCchHHHHHHHhhccccchhhhhccC
Q 025790 156 WKEGMGIPNGVNHEK--KGNKRP-LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNE 221 (248)
Q Consensus 156 Wk~gk~~t~~~~~~k--~~~~r~-~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~~ 221 (248)
||+|+++|.+...++ +|++|. .+..|||+||+++.++ .+++||++|+++||||||+||+..
T Consensus 160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~-----~~~eige~ikd~i~P~av~yy~~~ 223 (225)
T 2e50_A 160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLVP 223 (225)
T ss_dssp BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC-
T ss_pred ecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC-----chhHHHHHHHhCccccHHHHhcCC
Confidence 999999998765433 244444 3468999999998765 358999999999999999999853
No 2
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=100.00 E-value=7.7e-59 Score=425.03 Aligned_cols=220 Identities=26% Similarity=0.472 Sum_probs=171.6
Q ss_pred chhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc----------ccchhhHHHH
Q 025790 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWLTAF 81 (248)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~----------~IP~FW~~vl 81 (248)
..+++..||+.|+++|.+|+.||.++++++.++++++++|++||+++++|+|++|++||+ +||+||++||
T Consensus 40 ~~~~m~sLp~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~qPLyeKR~eII~G~~e~e~~~kgIP~FWltvl 119 (359)
T 3fs3_A 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDKRREALVGNGEAKIGTPNLPEFWLRAL 119 (359)
T ss_dssp -----CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSSSTTSTTHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccccccccCCCCcHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred hhhhhhccccCcchHHhhcCcceeEEEEcc---CCCcceEEEEEecCCCccccCeEEEEEEeeCC--CCCe---eeeecc
Q 025790 82 ISHPALGELLSEEDQKIFRYLSSLEVEDFK---DVKSGYSITFNFSPNPYFEDNKLTKTFTFLDD--DGSM---KITATS 153 (248)
Q Consensus 82 ~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~---d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~--~g~~---~~~~t~ 153 (248)
+||+.++.+|+++|+++|+||+||+|++.. +.+.||+|+|+|++||||+|++|+|+|++... +|.+ .+++|+
T Consensus 120 ~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~dp~~~~se~t~ 199 (359)
T 3fs3_A 120 RNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATV 199 (359)
T ss_dssp HTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC--------CEEEEEECC
T ss_pred HhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCCCcccccceeee
Confidence 999999999999999999999999999863 55899999999999999999999999999752 2333 479999
Q ss_pred ccccCCCCCCCccccccCCCC-----c----cccccccccccccCCCCCCcC----------------CchHHHHHHHhh
Q 025790 154 IKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTID----------------GIQDEVAEIIKE 208 (248)
Q Consensus 154 I~Wk~gk~~t~~~~~~k~~~~-----r----~~~~~SFF~fF~~~~~~~~~~----------------~~d~ei~~~i~~ 208 (248)
|+||+||++|++..++|++++ | ..+..|||+||+++.++...+ +.|++||++|++
T Consensus 200 I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de~~~~de~~~~~~e~~l~~DfeIGe~Ikd 279 (359)
T 3fs3_A 200 IDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKE 279 (359)
T ss_dssp CCBCTTCCTTCC----------------------CCCGGGGSCCBCC------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCcccccccchhhhHHHHHHHHHhHHHHHHHHh
Confidence 999999999987655443322 2 246799999999998764211 147889999999
Q ss_pred ccccchhhhhccCCCCccccccc
Q 025790 209 DLWPNPLTYFNNEADEEEFEGDE 231 (248)
Q Consensus 209 ~i~p~av~yf~~~~~~~~~~~~~ 231 (248)
+|||+||+||+|++.++++++-+
T Consensus 280 ~IiP~av~yftGea~e~e~~~~~ 302 (359)
T 3fs3_A 280 RIIPYAVDYYLGIIIESESNSIV 302 (359)
T ss_dssp THHHHHHHHHTTCC---------
T ss_pred ceecChHHhhCCcccccccCCcc
Confidence 99999999999998877766553
No 3
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=100.00 E-value=6.4e-58 Score=428.23 Aligned_cols=212 Identities=26% Similarity=0.565 Sum_probs=186.5
Q ss_pred chhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhh---------------------
Q 025790 12 EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------------- 70 (248)
Q Consensus 12 ~~e~~~~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI--------------------- 70 (248)
+.+|+.+||+.|+++|.+|+.||.++..++.++++++++|++||.++++|||++|++||
T Consensus 81 ~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~G~~ept~eE~~~~~~~~~~~ 160 (417)
T 2ayu_A 81 DSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESL 160 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHT
T ss_pred ccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhcccccccchh
Confidence 45788999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------cccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEEEccCCCcceEEEEEe--cCC
Q 025790 71 ----------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNF--SPN 126 (248)
Q Consensus 71 ----------------------~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve~~~d~~~~f~l~F~F--~~N 126 (248)
++||+||++||+||+.|+.+|+++|++||+||+||+|++..+.+.||+|+|+| .+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~N 240 (417)
T 2ayu_A 161 NETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSAN 240 (417)
T ss_dssp TCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTC
T ss_pred hhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCC
Confidence 58999999999999999999999999999999999999988778899999999 999
Q ss_pred CccccCeEEEEEEeeCC---CCCe---eeeeccccccC-CCCCCCccccccCCC-----Ccc----ccccccccccccCC
Q 025790 127 PYFEDNKLTKTFTFLDD---DGSM---KITATSIKWKE-GMGIPNGVNHEKKGN-----KRP----LAEESFFTWFSDTQ 190 (248)
Q Consensus 127 pyF~N~~L~K~~~~~~~---~g~~---~~~~t~I~Wk~-gk~~t~~~~~~k~~~-----~r~----~~~~SFF~fF~~~~ 190 (248)
|||+|++|||+|++... +|+. .++||+|+||+ |||+|.+..++|+++ .|+ .+..|||+||+++.
T Consensus 241 pYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~ 320 (417)
T 2ayu_A 241 PFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPK 320 (417)
T ss_dssp SSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSC
T ss_pred ccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCC
Confidence 99999999999999863 2554 37999999999 999998776554332 232 45789999999988
Q ss_pred CCCCc-C-----------CchHHHHHHHhhccccchhhhhccCCC
Q 025790 191 EKDTI-D-----------GIQDEVAEIIKEDLWPNPLTYFNNEAD 223 (248)
Q Consensus 191 ~~~~~-~-----------~~d~ei~~~i~~~i~p~av~yf~~~~~ 223 (248)
.++.. + ..|++||++|+++|||+||+||+|++.
T Consensus 321 ~p~~dede~~~ee~e~~l~~DfeIG~~Ikd~IiP~AV~yftGea~ 365 (417)
T 2ayu_A 321 IQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAAL 365 (417)
T ss_dssp SCCCTTSSSTTHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHSHHH
T ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHhhccccHHHHhccccc
Confidence 76432 1 136799999999999999999999743
No 4
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=100.00 E-value=8.6e-58 Score=389.76 Aligned_cols=189 Identities=30% Similarity=0.658 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeE
Q 025790 27 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLE 106 (248)
Q Consensus 27 i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ 106 (248)
+++|++||.+++.+++++++++++|++||+++++|+|++|++||++||+||++||+|||.++.++ +.|+++|+||+||+
T Consensus 2 ~~~L~~iQ~e~~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~ 80 (193)
T 3kyp_A 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLD 80 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEE
Confidence 57899999999999999999999999999999999999999999999999999999999999876 79999999999999
Q ss_pred EEEccCCCcceEEEEEecC--CCccccCeEEEEEEeeCCCCCeeeeeccccccCCCCCCCccccccCCCCcccccccccc
Q 025790 107 VEDFKDVKSGYSITFNFSP--NPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFT 184 (248)
Q Consensus 107 Ve~~~d~~~~f~l~F~F~~--NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~Wk~gk~~t~~~~~~k~~~~r~~~~~SFF~ 184 (248)
|++..+++.||+|+|+|++ ||||+|++|+|+|++.. +|+.++++|+|+||+|+|+|.+..++|+..++..+..|||+
T Consensus 81 v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~-~g~~~~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~ 159 (193)
T 3kyp_A 81 LKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN-NQEKVVECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFE 159 (193)
T ss_dssp CBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-----CCCCCCCCCCCSSCCCCC--------------CCCTTT
T ss_pred EEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC-CCCeeeccceeeeecCCCcchhhhhccccccccCCcchHhh
Confidence 9988777899999999998 89999999999999988 78888999999999999999765444332233457799999
Q ss_pred ccccCCCCCCcCCchHHHHHHHhhccccchhhhhccCC
Q 025790 185 WFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEA 222 (248)
Q Consensus 185 fF~~~~~~~~~~~~d~ei~~~i~~~i~p~av~yf~~~~ 222 (248)
||+++.++ .+++||++|+++||||||+||+|+.
T Consensus 160 wF~~~~~~-----~~~eige~ikd~i~P~~l~yy~ge~ 192 (193)
T 3kyp_A 160 WFTTDELQ-----DKPDVGELIRREIWHNPLSYYLGLE 192 (193)
T ss_dssp TCCSSCCT-----TTTCTTHHHHTTTTTCHHHHHC---
T ss_pred hcCCCCcC-----CchHHHHHHHhCeeeCHHHHhCCCC
Confidence 99998865 5788999999999999999999964
No 5
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=100.00 E-value=2.8e-53 Score=377.54 Aligned_cols=195 Identities=24% Similarity=0.401 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchhhHHHHhhhhhhccccCcchHHhhcCcceeEEE
Q 025790 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE 108 (248)
Q Consensus 29 ~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~Ve 108 (248)
+|..++.++..++.++.++.++++++|+++++|+|++|++||++||+||++||+||+.|+.+|+++|++||+||+||+|+
T Consensus 10 ~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~ 89 (264)
T 2zd7_A 10 EHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVE 89 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEE
Confidence 45556666666666777777889999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec-----cCCCcceEEEEEecC-CCccccCeEEEEEEeeCC-CC--C--eeeeeccccccCCCCC-CCccccccC---CC
Q 025790 109 DF-----KDVKSGYSITFNFSP-NPYFEDNKLTKTFTFLDD-DG--S--MKITATSIKWKEGMGI-PNGVNHEKK---GN 173 (248)
Q Consensus 109 ~~-----~d~~~~f~l~F~F~~-NpyF~N~~L~K~~~~~~~-~g--~--~~~~~t~I~Wk~gk~~-t~~~~~~k~---~~ 173 (248)
++ .+.++||+|+|+|++ ||||+|++|+|+|++... +| . .++++|+|+||+|+++ +.+...+|+ ++
T Consensus 90 ~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~ 169 (264)
T 2zd7_A 90 WLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGK 169 (264)
T ss_dssp EGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEEEEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHH
T ss_pred EecccccCCCCCceEEEEEeCCCCCCccCCeEEEEEEecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccc
Confidence 96 567899999999999 999999999999999862 23 3 7789999999997654 443332221 11
Q ss_pred Cc-cccccccccccccCCCCCCc-CCchHHHHHHHhhccccchhhhhccCCC
Q 025790 174 KR-PLAEESFFTWFSDTQEKDTI-DGIQDEVAEIIKEDLWPNPLTYFNNEAD 223 (248)
Q Consensus 174 ~r-~~~~~SFF~fF~~~~~~~~~-~~~d~ei~~~i~~~i~p~av~yf~~~~~ 223 (248)
++ .....|||+||+++..++.. ...+++||++|+++||||||+||+|+..
T Consensus 170 ~~~r~~~~SFF~fF~~~~~~~~~~~~~d~eig~~Ikd~I~P~al~yf~g~~~ 221 (264)
T 2zd7_A 170 KKYRQGMKTIFGWFRWTGLKPGKEFPHGDSLASLFSEEIYPFCVKYYAEAQR 221 (264)
T ss_dssp HHHHHHHTSHHHHTTCCSSSTTSSSTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccCCCCCCcceecCCCCCCccccccCchhHHHHHHhhhccCHHHHhccccc
Confidence 11 13457999999998766432 2368999999999999999999997633
No 6
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=93.45 E-value=0.19 Score=33.02 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhh
Q 025790 30 LQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKR 66 (248)
Q Consensus 30 L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR 66 (248)
+..|+..+..++.++++|+-++.+.|..+++|+.+.-
T Consensus 12 ~eEL~~rl~~Ld~~Me~Ei~elr~RY~~KRqPIldAi 48 (51)
T 2jo8_A 12 VEDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 4567888899999999999999999999999998653
No 7
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=90.00 E-value=0.63 Score=37.99 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcccchh
Q 025790 18 QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDF 76 (248)
Q Consensus 18 ~~~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~IP~F 76 (248)
.--.++-.++..+.+++.++..++..+..++-.+...|.+..+|+-.+...+-..|..|
T Consensus 13 ~~~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y 71 (171)
T 2p2u_A 13 ADIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATF 71 (171)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466889999999999999999999999999999999999999998888877777666
No 8
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=61.58 E-value=17 Score=31.37 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHh
Q 025790 21 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDK 65 (248)
Q Consensus 21 ~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~k 65 (248)
.+++.++.+|..||.++..++.++.++..++.+-...+++.+.+.
T Consensus 9 ~~l~~~~~~l~~lq~e~~~~~~ele~ky~~~~~Ply~kR~eII~~ 53 (264)
T 2zd7_A 9 NEHAKAFLGLAKCEEEVDAIEREVELYRLNKMKPVYEKRDAYIDE 53 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 457889999999999999999999999988888777777666543
No 9
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=26.78 E-value=99 Score=31.05 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 28 ~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
.+++..|++.+..+-...+.+++...--+.+++-+|.+|++++.+
T Consensus 621 ~~ie~AQkkvE~~nf~~Rk~ll~yDdv~n~QR~~iY~~R~~iL~~ 665 (822)
T 3jux_A 621 KLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSLRDQILLE 665 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778999999999999999999999999999999999999975
No 10
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=26.05 E-value=57 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=17.7
Q ss_pred HHHHHHHhhchhHHhhhhhhcccch
Q 025790 51 VEQKYSEIRKPVYDKRNDIIKSIPD 75 (248)
Q Consensus 51 le~ky~~~~~Ply~kR~eiI~~IP~ 75 (248)
+++.-.....-++.+|.++++++|.
T Consensus 15 IE~edyE~L~~LL~kREkLlk~L~~ 39 (79)
T 2fzt_A 15 IEKEDYETLLSLLNKRKELMEGLPK 39 (79)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhCcH
Confidence 4555455666688889888888764
No 11
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=25.98 E-value=1e+02 Score=20.60 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 025790 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVY 63 (248)
Q Consensus 20 ~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply 63 (248)
+.+...+|..|...++. ..|..+-..|..+|++.|-+..+--+
T Consensus 3 ~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~~~ 45 (60)
T 3bhp_A 3 SNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRSSM 45 (60)
T ss_dssp CHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999998877 44555556677788888877665433
No 12
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=23.60 E-value=1.2e+02 Score=30.77 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 28 ~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
.+++..|+..+..+-...+.+++...--+.+++-+|++|++++.+
T Consensus 651 ~~ie~aQkkvE~~nf~iRk~ll~yDdv~n~QR~~iY~~R~~iL~~ 695 (922)
T 1nkt_A 651 RAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEG 695 (922)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456678999999998999999988888889999999999999964
No 13
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=23.60 E-value=1.2e+02 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 28 ~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
.++...|+..+..+-...+.+++...--+.+++-+|++|++++.+
T Consensus 617 ~~i~~aq~~ve~~~~~~Rk~ll~yddv~n~QR~~iy~~R~~~l~~ 661 (853)
T 2fsf_A 617 KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV 661 (853)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677888888888888888888888889999999999999964
No 14
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=23.45 E-value=83 Score=20.60 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 025790 20 DSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKP 61 (248)
Q Consensus 20 ~~~v~~~i~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~P 61 (248)
+.+...+|..|...++. ..|..+-..|..+|++.|-+..+-
T Consensus 3 ~~~~i~RINeLakK~K~-~gLT~eEk~EQ~~LR~eYl~~fR~ 43 (54)
T 2jvd_A 3 SNAKIARINELAAKAKA-GVITEEEKAEQQKLRQEYLKGFRS 43 (54)
T ss_dssp CHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999988877 445555556777788888766543
No 15
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=22.76 E-value=1e+02 Score=16.75 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025790 26 SIEKLQEIQDELEKINEE 43 (248)
Q Consensus 26 ~i~~L~~lQ~e~~~le~e 43 (248)
-+..|+++|..+.++..+
T Consensus 6 lykeledlqerlrklrkk 23 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777666543
No 16
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=21.69 E-value=1.4e+02 Score=29.98 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 29 KLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 29 ~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
++...|..++..+-...+.+++...--+.+++-+|++|++++.+
T Consensus 580 ~i~~aq~~ve~~~~~~rk~ll~yddv~~~QR~~iy~~R~~~l~~ 623 (844)
T 1tf5_A 580 AVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDS 623 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677888888888888888998888899999999999999975
No 17
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=21.07 E-value=1.5e+02 Score=30.41 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhcc
Q 025790 28 EKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKS 72 (248)
Q Consensus 28 ~~L~~lQ~e~~~le~e~~~e~~~le~ky~~~~~Ply~kR~eiI~~ 72 (248)
.+++..|+..+..+-...+.+++...--+.+++-+|++|++++.+
T Consensus 732 ~~ie~AQkkvE~~nf~iRK~ll~yDdV~n~QR~~IY~~R~~iL~~ 776 (997)
T 2ipc_A 732 RSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG 776 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678999999999999999998888899999999999999976
No 18
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.40 E-value=2.4e+02 Score=20.13 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025790 18 QIDSELVLSIEKLQEIQDELEKINEEA 44 (248)
Q Consensus 18 ~~~~~v~~~i~~L~~lQ~e~~~le~e~ 44 (248)
.+|++.+..+..+..+|.++..+..+.
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~ 29 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQK 29 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999888664
Done!