BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025794
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O53183|Y2456_MYCTU Uncharacterized MFS-type transporter Rv2456c/MT2531
           OS=Mycobacterium tuberculosis GN=Rv2456c PE=3 SV=1
          Length = 418

 Score = 34.7 bits (78), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 156 LSIVTPEYVTDLFEKGSLLNTVGNRLFYAALPLLLWIFGPVLVF--LCSVTMVPVLYNLD 213
           L  V P++      +    N  GN     A   L + FGPV+VF  L  + ++ VL  L 
Sbjct: 127 LGAVGPQFFARRIGRNEAFNHAGNASAAGATGALAYFFGPVVVFWVLAGMALISVLATLR 186

Query: 214 FVLGNIDNDGKGSGTKGKQLDHVSGYAGGPH 244
                +D+D        + +DH  G    PH
Sbjct: 187 IPPDAVDHD------LARGMDHAPGE---PH 208


>sp|Q0S2J2|DNLJ_RHOSR DNA ligase OS=Rhodococcus sp. (strain RHA1) GN=ligA PE=3 SV=1
          Length = 696

 Score = 33.1 bits (74), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 149 INTPPDPLSIVTPEYVTDLFEKGSLLNTVGNRLFYAALPLLLWIF------GPVLVFLCS 202
           + TP  P  +V   + TD      L   +     +A   L  WI       GP L +LC 
Sbjct: 63  LRTPDSPTQLVGGGFSTDFASADHLERMLSLDNVFATDELRTWISRVEQETGPDLHYLCE 122

Query: 203 VTMVPVLYNLDFVLGNIDNDG-KGSGTKGKQL 233
           V +  V  NL +  G +D    +G G  G+++
Sbjct: 123 VKIDGVALNLVYENGRLDRAATRGDGRTGEEV 154


>sp|P34651|YOT5_CAEEL Uncharacterized protein ZK632.5 OS=Caenorhabditis elegans
           GN=ZK632.5 PE=4 SV=1
          Length = 824

 Score = 33.1 bits (74), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 140 RFVNQVNLLINTPPDPLSIVTPEYVTDLFEK 170
           R  N+ +LL+ TPP+PL++   + VTD++ +
Sbjct: 606 RSTNEDSLLVVTPPEPLNVFVSKSVTDIYSQ 636


>sp|O80632|MTP11_ARATH Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2
           SV=1
          Length = 394

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 34/80 (42%)

Query: 7   YLDVILVPLGFSITMAYHIWLWHKIRTEPLTTIVGTNARGRRLWVTAMMKDNEKKNILAV 66
           Y+D  + P+G  I   Y I  W     E + ++VG +AR   L     +  N  K I  +
Sbjct: 267 YIDYWIDPVGAIILALYTIRTWSMTVLENVNSLVGKSARPEYLQKLTYLCWNHHKAIRHI 326

Query: 67  QSLRNMIMGSTLMATTSILL 86
            ++R    GS       I+L
Sbjct: 327 DTVRAYTFGSHYFVEVDIVL 346


>sp|Q5SY80|CA101_HUMAN Uncharacterized protein C1orf101 OS=Homo sapiens GN=C1orf101 PE=2
           SV=1
          Length = 951

 Score = 32.3 bits (72), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 35  PLTTIVGTNARGRRLWVTAMMKDNEKKNILAVQSLRNMIMGSTLMATTSILLCTGLAAVI 94
           P   I G ++R +  WV  ++K   +++  AV +   + +GS L+    ++  T L  ++
Sbjct: 323 PDGGITGISSR-KWCWVNYLLKAKGRRSTFAVWTENEIYLGSILLKFARLVTTTELKNIL 381

Query: 95  SSTYSVKKPLNDAVYGGHG-EFMLALKYVSLLTI 127
           S + +    ++   Y GH  E  + L Y ++  +
Sbjct: 382 SLSVTATLTIDRVEYTGHPLEIAVFLNYCTVCNV 415


>sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus musculus GN=Ddx24 PE=1 SV=2
          Length = 857

 Score = 31.6 bits (70), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 15  LGFSITMAYHIWLWHKIRTEPLTTIVGTNARGRRLWVTAMM----KDNEKKNIL 64
           L F+I M + +  WHK++  P+    G   R  R   TA +    KD  +  +L
Sbjct: 246 LAFAIPMIHSVLQWHKMKAPPIPRSTGMPPREMRFGATAHLGSPCKDRTESGVL 299


>sp|Q9E780|VP4_ROT18 Outer capsid protein VP4 OS=Rotavirus A (isolate
           Cow/India/Hg18/2000
           G15-Px[21]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-E2-Hx) PE=2 SV=1
          Length = 776

 Score = 31.2 bits (69), Expect = 7.6,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 67  QSLRNMIMGSTLMATTSILLCTGLAAVISSTYSVKKPLNDAVYGGHGEFMLALKYVSLLT 126
           Q+ RNM+   +L A  + ++C G        YS + P+        G   L    V+L T
Sbjct: 360 QAFRNMVYVRSLAANLNTVICNG------GDYSFQVPVGQWPVMSGGAVSLQSAGVTLST 413

Query: 127 IFLFSFFCHSLAIRFVNQVNLLINTPPDPLSIVTPEYVTDLFEKGSLLNTVGNRLFYAAL 186
            F      +SL  RF    +L + +PP     +T   V++L+   +  N  G R FY  L
Sbjct: 414 QFTDFVSLNSLRFRF----SLAVESPPFS---ITRTRVSNLYGLPA-ANPNGGRDFYEIL 465


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.141    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,638,465
Number of Sequences: 539616
Number of extensions: 3708345
Number of successful extensions: 11067
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11065
Number of HSP's gapped (non-prelim): 9
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)