Query 025794
Match_columns 248
No_of_seqs 109 out of 291
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04654 DUF599: Protein of un 100.0 5.1E-67 1.1E-71 460.3 22.6 205 10-218 1-212 (216)
2 COG3821 Predicted membrane pro 100.0 7.9E-57 1.7E-61 386.2 18.3 207 7-217 4-219 (234)
3 PF15201 Rod_cone_degen: Progr 61.8 18 0.0004 24.9 4.1 44 197-243 5-52 (54)
4 TIGR00985 3a0801s04tom mitocho 56.2 13 0.00028 31.4 3.2 26 12-37 12-37 (148)
5 PRK13823 conjugal transfer pro 54.4 33 0.00072 26.7 5.1 40 9-57 42-81 (94)
6 PF02064 MAS20: MAS20 protein 46.1 6.7 0.00015 31.9 0.0 26 12-37 2-27 (121)
7 COG1288 Predicted membrane pro 41.5 47 0.001 33.0 5.0 46 6-51 216-262 (481)
8 COG3462 Predicted membrane pro 37.9 31 0.00068 27.8 2.6 43 171-214 31-73 (117)
9 KOG4056 Translocase of outer m 37.4 41 0.00089 28.2 3.3 27 11-37 13-39 (143)
10 PF11808 DUF3329: Domain of un 32.1 1.2E+02 0.0026 23.0 5.0 29 182-210 15-43 (90)
11 PF13301 DUF4079: Protein of u 30.9 3.2E+02 0.0069 23.5 7.9 31 70-100 82-112 (175)
12 PF05545 FixQ: Cbb3-type cytoc 30.5 74 0.0016 21.2 3.2 27 7-33 9-35 (49)
13 COG5268 TrbD Type IV secretory 30.2 89 0.0019 24.2 3.9 28 8-35 48-75 (93)
14 COG2268 Uncharacterized protei 29.3 71 0.0015 32.4 4.1 24 191-214 11-34 (548)
15 PRK10278 hypothetical protein; 26.8 2.9E+02 0.0062 22.7 6.6 31 115-145 73-109 (130)
16 TIGR02106 cyd_oper_ybgT cyd op 24.7 1.7E+02 0.0036 18.3 3.7 21 188-210 3-23 (30)
17 COG4736 CcoQ Cbb3-type cytochr 23.6 96 0.0021 22.3 2.9 29 6-34 8-36 (60)
18 COG4818 Predicted membrane pro 23.1 1.3E+02 0.0028 23.9 3.7 29 185-213 54-82 (105)
19 PF10617 DUF2474: Protein of u 22.5 1.9E+02 0.0041 19.2 3.9 24 189-212 8-31 (40)
No 1
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=100.00 E-value=5.1e-67 Score=460.34 Aligned_cols=205 Identities=39% Similarity=0.677 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHhhhhHHHHHHHHccccccchHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 025794 10 VILVPLGFSITMAYHIWLWHKIRTEPLTTIVGTNARGRRLWVTAMMKDNEKKNILAVQSLRNMIMGSTLMATTSILLCTG 89 (248)
Q Consensus 10 ~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g~~~~~R~~W~~~m~~r~~r~~il~vqtLrn~~~~~tFfASTsilli~g 89 (248)
+++++++++||+|||+|++++.+++| |+++.|+++|++||++|++||+ +|+|+|+|||++|++||||||||++++|
T Consensus 1 ~~av~~~l~~~~gY~~~l~~~~~~~p--t~~~~~~~~R~~W~~~m~~r~~--~ildvq~Lrn~~~~~tffASTailli~g 76 (216)
T PF04654_consen 1 LIAVPLFLLCWVGYHLYLERRVRRRP--TLSGIMNQYRRAWMRQMMDRKN--RILDVQTLRNLIMSATFFASTAILLIGG 76 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhccCCC--hHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999 9999999999999999998885 5999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCccccCC-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCC------CCCChHH
Q 025794 90 LAAVISSTYSVKKPLNDAVYGGH-GEFMLALKYVSLLTIFLFSFFCHSLAIRFVNQVNLLINTPPDP------LSIVTPE 162 (248)
Q Consensus 90 llall~~~~~~~~~~~~l~~~~~-~~~~~~lKl~~Ll~~f~~AFf~F~ws~R~~n~~~~lig~P~~~------~~~~~~~ 162 (248)
++++++++|+..+..+++|++++ ++..||+|++++++||++|||||+||+||||||+||||+||++ +.+..++
T Consensus 77 ~~all~~~~~~~~~~~~~~~~~~~s~~~~~lK~l~ll~~f~~aFf~f~~s~R~~n~~~~li~~~p~~~~~~~~~~~~~~~ 156 (216)
T PF04654_consen 77 LLALLGSTDKLSSVASDLPFGGSASRFLFELKLLLLLVIFLYAFFKFTWSIRQYNHASFLIGAPPEPPEGDEAEREAFAE 156 (216)
T ss_pred HHHHHcCcHHHhhHHhhCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHH
Confidence 99999999999989999999888 6678999999999999999999999999999999999986432 2346777
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCC
Q 025794 163 YVTDLFEKGSLLNTVGNRLFYAALPLLLWIFGPVLVFLCSVTMVPVLYNLDFVLGN 218 (248)
Q Consensus 163 ~~a~~~~ra~~~~n~GlRa~Yfal~ll~W~~gP~~l~~~tv~vv~vLy~rdf~s~~ 218 (248)
++++++++|+++||.|+|+|||++|+++|++||++++++|+++|.+||||||+|+.
T Consensus 157 ~~a~~~~~a~~~fn~GlRa~yfal~~l~W~~gP~~~~~~t~~vv~~L~~rdf~S~~ 212 (216)
T PF04654_consen 157 YAARVLNRAGNFFNRGLRAYYFALPLLLWFFGPWALIAATVLVVAVLYRRDFRSRA 212 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 89999999999999999999999999999999999999999999999999999874
No 2
>COG3821 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.9e-57 Score=386.22 Aligned_cols=207 Identities=19% Similarity=0.282 Sum_probs=189.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHhhhhHHHHHHHHccccccchHHHHHhhhhhhHHHHHHHHHHHH
Q 025794 7 YLDVILVPLGFSITMAYHIWLWHKIRTEPLTTIVGTNARGRRLWVTAMMKDNEKKNILAVQSLRNMIMGSTLMATTSILL 86 (248)
Q Consensus 7 ~lD~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g~~~~~R~~W~~~m~~r~~r~~il~vqtLrn~~~~~tFfASTsill 86 (248)
.+|++++.+|+.||++|..+..++...+.+++. .|+.+|++||++|..||.| +.|.|++.+++++++|||||++++
T Consensus 4 l~d~lA~~~F~~~W~~yt~~~~~kg~srasL~t--~m~~~R~~Wmr~~l~Rdir--iiDtqii~glq~gtaFFASstlia 79 (234)
T COG3821 4 LLDLLALAVFLLCWLLYTPASTRKGFSRASLNT--AMNEIRRRWMRNMLVRDIR--IIDTQIIGGLQNGTAFFASSTLIA 79 (234)
T ss_pred HHHHHHHHHHHHHHHhhhHHhccCccchhHHHH--HHHHHHHHHHHHHHHHHHH--HHHHHHHHhHhccchHHHHhhHHH
Confidence 469999999999999999999998888887776 9999999999999999965 999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCccccCCchh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC-CCCC----CCCCh
Q 025794 87 CTGLAAVISSTYSVKKPLNDAVYGGHGEF-MLALKYVSLLTIFLFSFFCHSLAIRFVNQVNLLINT-PPDP----LSIVT 160 (248)
Q Consensus 87 i~gllall~~~~~~~~~~~~l~~~~~~~~-~~~lKl~~Ll~~f~~AFf~F~ws~R~~n~~~~lig~-P~~~----~~~~~ 160 (248)
++|+++++|++|++.++++|+|+...+++ .+|+|+++|.++|.|+||||.||+||||||+++||+ |-.. +++..
T Consensus 80 lgg~falLgatD~v~~v~~dLp~v~~~sr~afelKv~~l~~~f~ysffkFgWs~RlfNyc~iliGa~PM~~~~~~~~~~a 159 (234)
T COG3821 80 LGGCFALLGATDRVLSVLSDLPFVAKASRTAFELKVGGLTVLFAYSFFKFGWSYRLFNYCSILIGAIPMWADNAVDAEAA 159 (234)
T ss_pred HHHHHHHHcCchhHHHHHcCCchhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccccchHHH
Confidence 99999999999999999999999888664 699999999999999999999999999999999996 7422 22222
Q ss_pred ---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCC
Q 025794 161 ---PEYVTDLFEKGSLLNTVGNRLFYAALPLLLWIFGPVLVFLCSVTMVPVLYNLDFVLG 217 (248)
Q Consensus 161 ---~~~~a~~~~ra~~~~n~GlRa~Yfal~ll~W~~gP~~l~~~tv~vv~vLy~rdf~s~ 217 (248)
.+.+++++..|+++||.|+|+|||++++++||++|++|+++|++++.+|+||||+|+
T Consensus 160 e~aaerai~mn~lAak~FN~GlRa~ffsig~lgWfi~p~vFm~~T~~vilvL~rRqf~S~ 219 (234)
T COG3821 160 ERAAERAIRMNILAAKHFNAGLRAYFFSIGYLGWFISPYVFMLSTLGVILVLLRRQFFSE 219 (234)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 233557888899999999999999999999999999999999999999999999995
No 3
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=61.78 E-value=18 Score=24.94 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhccCC----CCCCCCCCCCCCCCCccccccCCCCC
Q 025794 197 LVFLCSVTMVPVLYNLDFVLG----NIDNDGKGSGTKGKQLDHVSGYAGGP 243 (248)
Q Consensus 197 ~l~~~tv~vv~vLy~rdf~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (248)
.|+++|+. .||||.|... +..++++..|+..+.+..-.|---+|
T Consensus 5 lfllstla---mlwrrrfanrvqpeps~vdgav~gss~~td~qssgre~~p 52 (54)
T PF15201_consen 5 LFLLSTLA---MLWRRRFANRVQPEPSGVDGAVVGSSSDTDLQSSGREKEP 52 (54)
T ss_pred HHHHHHHH---HHHHHHHhccCCCCCCCCCcceeccccccCcccCCcccCC
Confidence 34555554 4679999766 33677777777777665555544444
No 4
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=56.18 E-value=13 Score=31.37 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCC
Q 025794 12 LVPLGFSITMAYHIWLWHKIRTEPLT 37 (248)
Q Consensus 12 av~~~l~~~~gYh~~l~~~~~~~P~~ 37 (248)
+.....+..+||.+|..|+.|.+|..
T Consensus 12 ~ag~a~~~flgYciYFD~KRR~dPdF 37 (148)
T TIGR00985 12 AAGIAAAAFLGYAIYFDYKRRNDPDF 37 (148)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCHHH
Confidence 34456788999999999999999964
No 5
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=54.40 E-value=33 Score=26.70 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCChhHHHhhhhHHHHHHHHcc
Q 025794 9 DVILVPLGFSITMAYHIWLWHKIRTEPLTTIVGTNARGRRLWVTAMMKD 57 (248)
Q Consensus 9 D~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g~~~~~R~~W~~~m~~r 57 (248)
++.++..++++|+.=|..+.+..|++| +.|+.+.+++-.+
T Consensus 42 ~~~a~~~gl~lw~v~h~~l~~mAK~DP---------~~~~V~~Rh~ry~ 81 (94)
T PRK13823 42 TWRAALFGIALWFGALFALRLMAKADP---------KMRHVYLRHRRYK 81 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCh---------HHHHHHHHHhhcc
Confidence 445677899999999999999999999 3455555555444
No 6
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=46.06 E-value=6.7 Score=31.91 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCC
Q 025794 12 LVPLGFSITMAYHIWLWHKIRTEPLT 37 (248)
Q Consensus 12 av~~~l~~~~gYh~~l~~~~~~~P~~ 37 (248)
++.+..+..+||.+|..|+.|++|..
T Consensus 2 ~ag~a~~~~lgYciYFD~KRR~dP~f 27 (121)
T PF02064_consen 2 AAGVAAAAFLGYCIYFDYKRRSDPDF 27 (121)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHhhcccccccChHH
Confidence 44567788999999999999999965
No 7
>COG1288 Predicted membrane protein [Function unknown]
Probab=41.52 E-value=47 Score=32.97 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhccCCCCChhH-HHhhhhHHHH
Q 025794 6 CYLDVILVPLGFSITMAYHIWLWHKIRTEPLTTIVG-TNARGRRLWV 51 (248)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~~~~~P~~t~~g-~~~~~R~~W~ 51 (248)
-.+-++...++.++-+.|-.|+..+.||+|+.+... ...+.|+.|.
T Consensus 216 ~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~ 262 (481)
T COG1288 216 MGLRIVVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFK 262 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhh
Confidence 356678888999999999999999999999886533 3344455554
No 8
>COG3462 Predicted membrane protein [Function unknown]
Probab=37.87 E-value=31 Score=27.82 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 025794 171 GSLLNTVGNRLFYAALPLLLWIFGPVLVFLCSVTMVPVLYNLDF 214 (248)
Q Consensus 171 a~~~~n~GlRa~Yfal~ll~W~~gP~~l~~~tv~vv~vLy~rdf 214 (248)
++.||+.|.|+.--+ -+-.|++-|+.-+++-+.+|..+|+.--
T Consensus 31 gg~~y~~gy~gm~GG-~yGm~lImpI~~~vvli~lvvfm~~~~g 73 (117)
T COG3462 31 GGAFYPGGYRGMMGG-LYGMWLIMPIFWAVVLIFLVVFMFYILG 73 (117)
T ss_pred cCcccCCCccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676766443222 2346999999999988888888886543
No 9
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.42 E-value=41 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCC
Q 025794 11 ILVPLGFSITMAYHIWLWHKIRTEPLT 37 (248)
Q Consensus 11 vav~~~l~~~~gYh~~l~~~~~~~P~~ 37 (248)
++-.+..+..+||.+|..++.+.+|+.
T Consensus 13 I~agiag~af~gYciYFd~KRrsdP~f 39 (143)
T KOG4056|consen 13 IAAGIAGLAFIGYCIYFDKKRRSDPDF 39 (143)
T ss_pred HHHHHHHHHHHHHHhhcccccccChhH
Confidence 344567788999999999999999964
No 10
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=32.11 E-value=1.2e+02 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 025794 182 FYAALPLLLWIFGPVLVFLCSVTMVPVLY 210 (248)
Q Consensus 182 ~Yfal~ll~W~~gP~~l~~~tv~vv~vLy 210 (248)
++....+++|++|.++..++..+++.+.|
T Consensus 15 ~~l~~~lvG~~~g~~~~~l~~~l~~~l~w 43 (90)
T PF11808_consen 15 LLLAAALVGWLFGHLWWALLLGLLLYLFW 43 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667788999999876555544444433
No 11
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=30.91 E-value=3.2e+02 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=24.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 025794 70 RNMIMGSTLMATTSILLCTGLAAVISSTYSV 100 (248)
Q Consensus 70 rn~~~~~tFfASTsilli~gllall~~~~~~ 100 (248)
+....+...++...+..++|......+.++.
T Consensus 82 ~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~l 112 (175)
T PF13301_consen 82 RHYRLGFALLAFMGLGALGGQLGTYRQNGKL 112 (175)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHcCCCC
Confidence 4455678888889999999999888888774
No 12
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=30.49 E-value=74 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 025794 7 YLDVILVPLGFSITMAYHIWLWHKIRT 33 (248)
Q Consensus 7 ~lD~vav~~~l~~~~gYh~~l~~~~~~ 33 (248)
.++.+..++++++.+|+-+|...+.+|
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 457788889999999999999855543
No 13
>COG5268 TrbD Type IV secretory pathway, TrbD component [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.17 E-value=89 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 025794 8 LDVILVPLGFSITMAYHIWLWHKIRTEP 35 (248)
Q Consensus 8 lD~vav~~~l~~~~gYh~~l~~~~~~~P 35 (248)
.|+++-.+++++|+.=|+...+..|.+|
T Consensus 48 q~Wiaa~fGl~iW~va~a~~r~~Ak~DP 75 (93)
T COG5268 48 QLWIAAGFGLGIWFVAHALARWLAKADP 75 (93)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcCh
Confidence 4777778899999999999999999999
No 14
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.29 E-value=71 Score=32.43 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhc
Q 025794 191 WIFGPVLVFLCSVTMVPVLYNLDF 214 (248)
Q Consensus 191 W~~gP~~l~~~tv~vv~vLy~rdf 214 (248)
|+++|+..++.-+++|++.+..-|
T Consensus 11 ~~~~~ivvv~i~~ilv~if~~~~~ 34 (548)
T COG2268 11 LMLIAIVVVVILVILVLIFFGKRF 34 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999988888877777663333
No 15
>PRK10278 hypothetical protein; Provisional
Probab=26.81 E-value=2.9e+02 Score=22.74 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH------HHHHhhhhhh
Q 025794 115 FMLALKYVSLLTIFLFSFFCH------SLAIRFVNQV 145 (248)
Q Consensus 115 ~~~~lKl~~Ll~~f~~AFf~F------~ws~R~~n~~ 145 (248)
.+..-|++++++..+.+++.| ....|...+.
T Consensus 73 ~WLt~Kl~~lv~YI~lg~~Al~~k~~~~~~~R~~af~ 109 (130)
T PRK10278 73 QWLTEKLFGVIIYIVLGFIALDYRRMRSQQARFIAFP 109 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 466899999999999999987 5567776555
No 16
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=24.74 E-value=1.7e+02 Score=18.25 Aligned_cols=21 Identities=24% Similarity=0.868 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 025794 188 LLLWIFGPVLVFLCSVTMVPVLY 210 (248)
Q Consensus 188 ll~W~~gP~~l~~~tv~vv~vLy 210 (248)
+++|++|-... ++..++..++
T Consensus 3 YfaWilG~~lA--~~~~v~~a~w 23 (30)
T TIGR02106 3 YFAWILGTLLA--CAFGVLNAMW 23 (30)
T ss_pred hHHHHHHHHHH--HHHHHHHHHH
Confidence 46899996544 4444444443
No 17
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.64 E-value=96 Score=22.29 Aligned_cols=29 Identities=7% Similarity=-0.102 Sum_probs=23.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhccC
Q 025794 6 CYLDVILVPLGFSITMAYHIWLWHKIRTE 34 (248)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~~~~~ 34 (248)
+..|-..+.++.++.++|-+|.+++.+|+
T Consensus 8 ~~a~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 8 GFADAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 45677888899999999999988766554
No 18
>COG4818 Predicted membrane protein [Function unknown]
Probab=23.15 E-value=1.3e+02 Score=23.87 Aligned_cols=29 Identities=10% Similarity=0.361 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 025794 185 ALPLLLWIFGPVLVFLCSVTMVPVLYNLD 213 (248)
Q Consensus 185 al~ll~W~~gP~~l~~~tv~vv~vLy~rd 213 (248)
.+|..+|++.+...+++-++.+..+|.--
T Consensus 54 ~iP~Ig~lls~~v~l~a~iLwlv~mykAy 82 (105)
T COG4818 54 FIPYIGWLLSGLVGLAAFILWLVCMYKAY 82 (105)
T ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46888999999999888888887777543
No 19
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=22.47 E-value=1.9e+02 Score=19.16 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHh
Q 025794 189 LLWIFGPVLVFLCSVTMVPVLYNL 212 (248)
Q Consensus 189 l~W~~gP~~l~~~tv~vv~vLy~r 212 (248)
++||++=|..-+.++.+|..+.|.
T Consensus 8 l~W~v~iW~~SV~aL~~va~~~Rl 31 (40)
T PF10617_consen 8 LGWFVLIWAASVLALGVVAMLFRL 31 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999888875
Done!