Query 025794
Match_columns 248
No_of_seqs 109 out of 291
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1k_A Ephrin type-A receptor 11.3 1.7E+02 0.0058 18.0 2.4 20 193-212 18-37 (38)
2 1by6_A Apolipoprotein C-II; am 10.2 2.1E+02 0.0073 17.6 2.5 23 220-242 1-23 (36)
3 3h3g_B Parathyroid hormone-rel 9.7 1.4E+02 0.0048 16.8 1.5 16 42-57 4-19 (24)
4 2knc_A Integrin alpha-IIB; tra 9.2 4.5E+02 0.015 17.4 4.7 20 199-218 23-42 (54)
5 2h3o_A MERF; membrane protein, 9.2 49 0.0017 22.9 -0.8 28 7-35 31-58 (61)
6 1kf6_C Fumarate reductase 15 k 8.6 5.6E+02 0.019 20.0 5.1 70 68-143 26-95 (130)
7 2ki9_A Cannabinoid receptor 2; 8.5 80 0.0027 18.0 0.1 20 10-29 9-28 (33)
8 1waz_A MERF; protein structure 7.9 60 0.0021 21.2 -0.7 24 6-30 18-41 (46)
9 1et1_A Parathyroid hormone; he 6.6 2.7E+02 0.0093 16.9 1.9 16 42-57 15-30 (34)
10 2bpa_3 Protein (subunit of bac 6.5 4.4E+02 0.015 15.8 2.8 24 222-245 14-37 (37)
No 1
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.30 E-value=1.7e+02 Score=18.00 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHh
Q 025794 193 FGPVLVFLCSVTMVPVLYNL 212 (248)
Q Consensus 193 ~gP~~l~~~tv~vv~vLy~r 212 (248)
+|++..++..+++++.+|||
T Consensus 18 vG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHeec
Confidence 45555555555555666654
No 2
>1by6_A Apolipoprotein C-II; amphipathic helix, lipid association, LPL activation, signaling protein; NMR {Synthetic} SCOP: j.39.1.1
Probab=10.16 E-value=2.1e+02 Score=17.62 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCccccccCCCC
Q 025794 220 DNDGKGSGTKGKQLDHVSGYAGG 242 (248)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~ 242 (248)
.++||.+..-+|.-..+.-|+|-
T Consensus 1 ~~dEKir~~ys~~~~avtTYagI 23 (36)
T 1by6_A 1 AVDEKLRDLYSKSTAAMSTYTGI 23 (36)
T ss_dssp CCCSCSCSSTTTSTTTCTTCSSS
T ss_pred CHhHHHHHHHHhhHHHHHHHhHH
Confidence 36899999999988888888873
No 3
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=9.73 E-value=1.4e+02 Score=16.82 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=12.5
Q ss_pred HHhhhhHHHHHHHHcc
Q 025794 42 TNARGRRLWVTAMMKD 57 (248)
Q Consensus 42 ~~~~~R~~W~~~m~~r 57 (248)
+....|+-|.++.+++
T Consensus 4 ~Q~~rRr~wL~~ll~~ 19 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAE 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456799999999875
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.18 E-value=4.5e+02 Score=17.44 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 025794 199 FLCSVTMVPVLYNLDFVLGN 218 (248)
Q Consensus 199 ~~~tv~vv~vLy~rdf~s~~ 218 (248)
++.-.+++.+||+..|...+
T Consensus 23 LllL~li~~~LwK~GFFkR~ 42 (54)
T 2knc_A 23 LLLLTILVLAMWKVGFFKRN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCcccCC
Confidence 33334678899999997553
No 5
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=9.17 E-value=49 Score=22.91 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 025794 7 YLDVILVPLGFSITMAYHIWLWHKIRTEP 35 (248)
Q Consensus 7 ~lD~vav~~~l~~~~gYh~~l~~~~~~~P 35 (248)
.+|++++|. +...+|..+|..+|.+|..
T Consensus 31 wLd~vl~P~-l~~figl~~Y~~~r~~~~~ 58 (61)
T 2h3o_A 31 YLDYVLLPA-LAIFIGLTIYAIQRKRQAD 58 (61)
T ss_dssp HSSSSCCTT-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhhhc
Confidence 456655552 2223377777777766554
No 6
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=8.62 E-value=5.6e+02 Score=20.04 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=47.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025794 68 SLRNMIMGSTLMATTSILLCTGLAAVISSTYSVKKPLNDAVYGGHGEFMLALKYVSLLTIFLFSFFCHSLAIRFVN 143 (248)
Q Consensus 68 tLrn~~~~~tFfASTsilli~gllall~~~~~~~~~~~~l~~~~~~~~~~~lKl~~Ll~~f~~AFf~F~ws~R~~n 143 (248)
.+|.. ++-+.+=-|+.++-|++++-+..+.-... +.| -+++..+.+.++.|+..+..+.-=|..+=+-.+
T Consensus 26 MlRE~--T~v~~~wf~l~Ll~Gl~~L~~G~~aw~~f---v~f-l~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~ 95 (130)
T 1kf6_C 26 MLREG--TAVPAVWFSIELIFGLFALKNGPEAWAGF---VDF-LQNPVIVIINLITLAAALLHTKTWFELAPKAAN 95 (130)
T ss_dssp HHHHH--THHHHHHHHHHHHHHHHHHHTHHHHHHHH---HHH-HTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred HHHHH--hHHHHHHHHHHHHHHHHHHhcChHHHHHH---HHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHcchhhe
Confidence 34443 45666788999999999986655432211 122 234456789999999999999888876655443
No 7
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=8.48 E-value=80 Score=18.01 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025794 10 VILVPLGFSITMAYHIWLWH 29 (248)
Q Consensus 10 ~vav~~~l~~~~gYh~~l~~ 29 (248)
.+.+..|+.||.=||.....
T Consensus 9 ~~vv~~F~icW~P~~i~~~~ 28 (33)
T 2ki9_A 9 GLVLAVLLICWFPVLALMAH 28 (33)
T ss_dssp HHHHHHHTTTSSHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 45567899999999987654
No 8
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=7.94 E-value=60 Score=21.16 Aligned_cols=24 Identities=29% Similarity=0.629 Sum_probs=13.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 025794 6 CYLDVILVPLGFSITMAYHIWLWHK 30 (248)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~ 30 (248)
.++|++++|. ++.+++-.+|..+|
T Consensus 18 gyLDyVLlPa-La~Fi~lt~ya~~r 41 (46)
T 1waz_A 18 GYLDYVLLPA-LAIFIGLTIYAIQR 41 (46)
T ss_dssp SCCCCCSCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4688888773 23344444444444
No 9
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=6.59 E-value=2.7e+02 Score=16.92 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=12.0
Q ss_pred HHhhhhHHHHHHHHcc
Q 025794 42 TNARGRRLWVTAMMKD 57 (248)
Q Consensus 42 ~~~~~R~~W~~~m~~r 57 (248)
+....|+.|.++.+++
T Consensus 15 ~q~~~R~~WLq~~l~~ 30 (34)
T 1et1_A 15 LNSMERVEWLRKKLQD 30 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3456899999888764
No 10
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=6.53 E-value=4.4e+02 Score=15.79 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCccccccCCCCCCC
Q 025794 222 DGKGSGTKGKQLDHVSGYAGGPHF 245 (248)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~ 245 (248)
+..-+|++||....+-=|.||..|
T Consensus 14 pqplrgtkgkrkgarlwyvggqqf 37 (37)
T 2bpa_3 14 PQPLRGTKGKRKGARLWYVGGQQF 37 (37)
T ss_dssp CCCBCCSCCSSCCSCCCCSSSCCC
T ss_pred CccccccccccccceEEEeccccC
Confidence 444567777777777778887765
Done!