Query 025794
Match_columns 248
No_of_seqs 109 out of 291
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 17:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025794.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025794hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 14.1 41 0.003 19.5 1.6 24 187-210 8-31 (38)
2 d1kf6c_ f.21.2.2 (C:) Fumarate 7.9 3E+02 0.022 19.7 5.1 63 75-141 31-93 (130)
3 d1k0ma1 a.45.1.1 (A:92-240) Ch 5.0 1.8E+02 0.013 20.4 2.4 44 6-59 83-127 (149)
4 d1ntha_ c.1.25.1 (A:) Monometh 4.9 56 0.0041 28.0 -0.7 22 222-243 249-270 (457)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 3.9 3.7E+02 0.027 14.8 3.5 14 190-203 4-17 (34)
6 d1kyqa2 e.37.1.1 (A:151-273) B 3.7 1.9E+02 0.014 20.5 1.5 14 44-57 67-80 (123)
7 d1wi1a_ b.55.1.1 (A:) Calcium- 3.5 1.8E+02 0.013 18.9 1.3 19 38-56 89-107 (126)
8 d1txda2 b.55.1.1 (A:1020-1133) 3.2 2.2E+02 0.016 18.8 1.5 19 38-56 92-110 (114)
9 d1vk6a4 g.41.14.1 (A:97-125) N 3.0 1.8E+02 0.013 15.6 0.5 8 236-243 1-8 (29)
10 d1ntya2 b.55.1.1 (A:1415-1535) 2.8 2.3E+02 0.017 18.6 1.3 19 37-55 96-114 (121)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=14.07 E-value=41 Score=19.45 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 025794 187 PLLLWIFGPVLVFLCSVTMVPVLY 210 (248)
Q Consensus 187 ~ll~W~~gP~~l~~~tv~vv~vLy 210 (248)
.++-|++-|+.-.+.-+++..+|+
T Consensus 8 syLPwI~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHh
Confidence 345677777655555444444444
No 2
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=7.90 E-value=3e+02 Score=19.75 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025794 75 GSTLMATTSILLCTGLAAVISSTYSVKKPLNDAVYGGHGEFMLALKYVSLLTIFLFSFFCHSLAIRF 141 (248)
Q Consensus 75 ~~tFfASTsilli~gllall~~~~~~~~~~~~l~~~~~~~~~~~lKl~~Ll~~f~~AFf~F~ws~R~ 141 (248)
++-+.+=-++.++-|++++..+.+.-.... .| -+++...-+.++.|+..+..+.--|..+=+-
T Consensus 31 T~v~~~~f~lvLl~Gl~~L~~g~~aw~~fv---~f-lqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~ 93 (130)
T d1kf6c_ 31 TAVPAVWFSIELIFGLFALKNGPEAWAGFV---DF-LQNPVIVIINLITLAAALLHTKTWFELAPKA 93 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHHHHHHHH---HH-HTSSHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHhcCHHHHHHHH---HH-HhCcHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 455667778999999999877766533221 22 2344567799999999999998887766443
No 3
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=1.8e+02 Score=20.40 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=27.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhh-ccCCCCChhHHHhhhhHHHHHHHHcccc
Q 025794 6 CYLDVILVPLGFSITMAYHIWLWHKI-RTEPLTTIVGTNARGRRLWVTAMMKDNE 59 (248)
Q Consensus 6 ~~lD~vav~~~l~~~~gYh~~l~~~~-~~~P~~t~~g~~~~~R~~W~~~m~~r~~ 59 (248)
...|+.+.|+..-..+.|+.+-.+.. ...| .=.+|+++|.+|+.
T Consensus 83 t~aDi~l~p~l~r~~~~~~~~~~~~~~~~~p----------~l~~w~~~l~~rps 127 (149)
T d1k0ma1 83 TLADCNLLPKLHIVQVVCKKYRGFTIPEAFR----------GVHRYLSNAYAREE 127 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCCTTCH----------HHHHHHHHHHTSHH
T ss_pred cHHHHHHHHHHHHHHhhhcccccchhhhcCh----------HHHHHHHHHHCChH
Confidence 35699888887777776664432222 1112 22579999999974
No 4
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=4.94 E-value=56 Score=27.99 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCccccccCCCCC
Q 025794 222 DGKGSGTKGKQLDHVSGYAGGP 243 (248)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~ 243 (248)
.+.+++.-++|.+..-||||||
T Consensus 249 vg~~~~im~eqmPi~GGYA~G~ 270 (457)
T d1ntha_ 249 KGNSDIIMDEQMPIFGGYAGGI 270 (457)
T ss_dssp HHTTCEEEEECCCEETSSSCSH
T ss_pred hcccceeecccccccccccCCc
Confidence 3456777788899999999987
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.91 E-value=3.7e+02 Score=14.76 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=9.6
Q ss_pred HHHHhHHHHHHHHH
Q 025794 190 LWIFGPVLVFLCSV 203 (248)
Q Consensus 190 ~W~~gP~~l~~~tv 203 (248)
+|+++.+.-++.-.
T Consensus 4 LWlv~tv~G~~vi~ 17 (34)
T d2axtj1 4 LWIVATVAGMGVIV 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEeeehhhhhhHh
Confidence 68888877665433
No 6
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.67 E-value=1.9e+02 Score=20.46 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHcc
Q 025794 44 ARGRRLWVTAMMKD 57 (248)
Q Consensus 44 ~~~R~~W~~~m~~r 57 (248)
...|..|+.++++-
T Consensus 67 ~~~Rm~W~~qi~e~ 80 (123)
T d1kyqa2 67 VKYRMDWARRCTDL 80 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhH
Confidence 35899999999864
No 7
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=1.8e+02 Score=18.88 Aligned_cols=19 Identities=32% Similarity=0.664 Sum_probs=14.2
Q ss_pred ChhHHHhhhhHHHHHHHHc
Q 025794 38 TIVGTNARGRRLWVTAMMK 56 (248)
Q Consensus 38 t~~g~~~~~R~~W~~~m~~ 56 (248)
....-..+.|.+||+.+.+
T Consensus 89 ~f~A~s~~e~~~Wv~al~~ 107 (126)
T d1wi1a_ 89 IFASDDEQDRILWVQAMYR 107 (126)
T ss_dssp EEECSSHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 3444677899999998864
No 8
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=3.18 E-value=2.2e+02 Score=18.78 Aligned_cols=19 Identities=11% Similarity=0.462 Sum_probs=14.2
Q ss_pred ChhHHHhhhhHHHHHHHHc
Q 025794 38 TIVGTNARGRRLWVTAMMK 56 (248)
Q Consensus 38 t~~g~~~~~R~~W~~~m~~ 56 (248)
++..-..+.|+.||+++-+
T Consensus 92 ~l~A~s~~eK~~W~~~I~~ 110 (114)
T d1txda2 92 ELVAQTVSEKTVWQDLICR 110 (114)
T ss_dssp EEECSSHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHH
Confidence 4445667899999998764
No 9
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=1.8e+02 Score=15.61 Aligned_cols=8 Identities=38% Similarity=0.775 Sum_probs=6.2
Q ss_pred cccCCCCC
Q 025794 236 VSGYAGGP 243 (248)
Q Consensus 236 ~~~~~~~~ 243 (248)
.|||-|.|
T Consensus 1 fCGYCGh~ 8 (29)
T d1vk6a4 1 YCGYCGHE 8 (29)
T ss_dssp BCTTTCCB
T ss_pred CccccCCc
Confidence 38998876
No 10
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.84 E-value=2.3e+02 Score=18.56 Aligned_cols=19 Identities=5% Similarity=0.370 Sum_probs=14.3
Q ss_pred CChhHHHhhhhHHHHHHHH
Q 025794 37 TTIVGTNARGRRLWVTAMM 55 (248)
Q Consensus 37 ~t~~g~~~~~R~~W~~~m~ 55 (248)
.++..-+...|+.||+++-
T Consensus 96 ~~l~a~s~~eK~~W~~~I~ 114 (121)
T d1ntya2 96 IVLKASSIENKQDWIKHIR 114 (121)
T ss_dssp EEEECSSHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 3455567789999998774
Done!