Query 025795
Match_columns 248
No_of_seqs 366 out of 3236
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1533 Predicted GTPase [Gene 100.0 1E-61 2.3E-66 408.4 17.5 245 1-247 1-253 (290)
2 KOG1534 Putative transcription 100.0 2.9E-59 6.4E-64 388.1 16.9 242 1-245 2-249 (273)
3 PF03029 ATP_bind_1: Conserved 100.0 9.1E-51 2E-55 352.0 13.9 231 7-246 1-236 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 1.3E-35 2.8E-40 255.5 16.4 239 2-245 19-262 (366)
5 PRK13768 GTPase; Provisional 100.0 3.8E-29 8.2E-34 218.7 23.4 243 1-248 1-248 (253)
6 COG1126 GlnQ ABC-type polar am 100.0 3.1E-29 6.8E-34 210.4 9.5 143 3-154 29-206 (240)
7 COG1120 FepC ABC-type cobalami 100.0 3.3E-29 7.1E-34 217.7 8.0 162 3-174 29-229 (258)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.9E-28 8.4E-33 210.2 10.8 157 3-168 31-223 (254)
9 COG1131 CcmA ABC-type multidru 99.9 3.1E-26 6.8E-31 204.3 13.6 143 3-154 32-207 (293)
10 COG4555 NatA ABC-type Na+ tran 99.9 3E-26 6.6E-31 190.5 9.6 143 3-154 29-203 (245)
11 COG1116 TauB ABC-type nitrate/ 99.9 8.5E-26 1.8E-30 193.8 12.0 137 3-147 30-194 (248)
12 COG1136 SalX ABC-type antimicr 99.9 1.8E-25 4E-30 190.8 13.6 130 3-136 32-199 (226)
13 COG1125 OpuBA ABC-type proline 99.9 6.2E-25 1.4E-29 188.4 15.1 142 3-152 28-204 (309)
14 PRK13537 nodulation ABC transp 99.9 4.5E-25 9.7E-30 198.0 14.0 146 3-157 34-211 (306)
15 COG1135 AbcC ABC-type metal io 99.9 1.7E-25 3.7E-30 196.5 10.0 162 3-173 33-231 (339)
16 COG1127 Ttg2A ABC-type transpo 99.9 7.9E-25 1.7E-29 186.4 12.7 130 3-136 35-202 (263)
17 COG1124 DppF ABC-type dipeptid 99.9 3.1E-25 6.8E-30 189.3 9.8 145 3-155 34-213 (252)
18 TIGR01188 drrA daunorubicin re 99.9 1.2E-24 2.6E-29 194.8 13.9 144 3-155 20-195 (302)
19 PRK13536 nodulation factor exp 99.9 1.6E-24 3.5E-29 197.0 14.3 146 3-157 68-245 (340)
20 TIGR00960 3a0501s02 Type II (G 99.9 2.2E-24 4.8E-29 183.6 12.4 129 3-136 30-194 (216)
21 COG2884 FtsE Predicted ATPase 99.9 2.8E-24 6E-29 177.3 12.2 131 3-136 29-193 (223)
22 COG3842 PotA ABC-type spermidi 99.9 1.2E-24 2.5E-29 196.8 10.2 129 3-136 32-193 (352)
23 TIGR02314 ABC_MetN D-methionin 99.9 8.9E-25 1.9E-29 198.7 9.2 145 3-156 32-213 (343)
24 COG3839 MalK ABC-type sugar tr 99.9 8.2E-25 1.8E-29 196.9 8.6 128 4-136 31-190 (338)
25 cd03259 ABC_Carb_Solutes_like 99.9 3.9E-24 8.4E-29 181.8 12.1 129 3-136 27-187 (213)
26 COG4152 ABC-type uncharacteriz 99.9 2.7E-24 5.9E-29 183.5 10.9 157 3-168 29-214 (300)
27 COG3840 ThiQ ABC-type thiamine 99.9 1.5E-24 3.4E-29 177.9 8.2 143 3-154 26-200 (231)
28 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 7E-24 1.5E-28 180.7 12.5 129 3-136 31-197 (218)
29 cd03266 ABC_NatA_sodium_export 99.9 1.2E-23 2.7E-28 179.2 14.0 140 3-151 32-203 (218)
30 TIGR01288 nodI ATP-binding ABC 99.9 8.7E-24 1.9E-28 189.3 13.3 143 3-154 31-205 (303)
31 COG4559 ABC-type hemin transpo 99.9 5.1E-24 1.1E-28 178.5 10.9 161 3-168 28-226 (259)
32 cd03265 ABC_DrrA DrrA is the A 99.9 1E-23 2.3E-28 180.1 13.2 140 3-151 27-199 (220)
33 TIGR02673 FtsE cell division A 99.9 1.5E-23 3.2E-28 178.2 13.9 140 3-151 29-204 (214)
34 COG3638 ABC-type phosphate/pho 99.9 3.1E-24 6.7E-29 182.3 9.6 157 3-168 31-232 (258)
35 cd03269 ABC_putative_ATPase Th 99.9 1.7E-23 3.7E-28 177.4 14.2 141 3-152 27-196 (210)
36 cd03293 ABC_NrtD_SsuB_transpor 99.9 7.4E-24 1.6E-28 181.0 12.1 140 3-151 31-199 (220)
37 COG4604 CeuD ABC-type enteroch 99.9 5.7E-24 1.2E-28 176.6 10.7 140 3-148 28-203 (252)
38 cd03226 ABC_cobalt_CbiO_domain 99.9 1.5E-23 3.2E-28 177.3 13.5 139 3-150 27-192 (205)
39 cd03261 ABC_Org_Solvent_Resist 99.9 1.1E-23 2.3E-28 181.7 12.8 140 3-151 27-204 (235)
40 cd03292 ABC_FtsE_transporter F 99.9 1.1E-23 2.3E-28 179.0 12.5 129 3-136 28-192 (214)
41 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-23 2.5E-28 192.5 13.3 141 3-152 31-203 (356)
42 cd03268 ABC_BcrA_bacitracin_re 99.9 2.4E-23 5.2E-28 176.3 14.2 140 3-151 27-193 (208)
43 cd03219 ABC_Mj1267_LivG_branch 99.9 4.2E-24 9.2E-29 184.1 9.7 141 3-152 27-211 (236)
44 cd03218 ABC_YhbG The ABC trans 99.9 1.3E-23 2.9E-28 180.6 12.8 139 3-150 27-199 (232)
45 cd03225 ABC_cobalt_CbiO_domain 99.9 1.1E-23 2.3E-28 178.7 11.8 140 3-151 28-201 (211)
46 PRK09536 btuD corrinoid ABC tr 99.9 1.3E-23 2.8E-28 194.6 13.2 145 3-156 30-211 (402)
47 TIGR01166 cbiO cobalt transpor 99.9 2.4E-23 5.2E-28 174.0 13.2 129 3-136 19-183 (190)
48 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.2E-23 4.8E-28 178.9 13.0 129 3-136 49-198 (224)
49 TIGR03522 GldA_ABC_ATP gliding 99.9 2.2E-23 4.8E-28 186.5 13.5 144 3-156 29-204 (301)
50 COG1122 CbiO ABC-type cobalt t 99.9 2.1E-24 4.6E-29 186.5 6.5 140 4-152 32-207 (235)
51 cd03301 ABC_MalK_N The N-termi 99.9 2.8E-23 6E-28 176.4 13.0 129 3-136 27-187 (213)
52 cd03262 ABC_HisP_GlnQ_permease 99.9 3.7E-23 8E-28 175.5 13.7 139 3-150 27-201 (213)
53 COG0411 LivG ABC-type branched 99.9 3E-24 6.5E-29 183.3 6.5 129 3-136 31-206 (250)
54 cd03231 ABC_CcmA_heme_exporter 99.9 4.2E-23 9.1E-28 174.3 13.5 129 3-136 27-181 (201)
55 cd03298 ABC_ThiQ_thiamine_tran 99.9 2.4E-23 5.3E-28 176.6 12.0 140 3-151 25-196 (211)
56 TIGR03265 PhnT2 putative 2-ami 99.9 3.4E-23 7.4E-28 189.2 13.7 141 3-152 31-203 (353)
57 PRK11153 metN DL-methionine tr 99.9 2.8E-23 6E-28 189.1 13.0 143 3-154 32-211 (343)
58 PRK11248 tauB taurine transpor 99.9 3.4E-23 7.4E-28 181.2 13.1 141 3-152 28-197 (255)
59 PRK10908 cell division protein 99.9 3.2E-23 6.9E-28 177.3 12.5 129 3-136 29-193 (222)
60 TIGR01184 ntrCD nitrate transp 99.9 3.2E-23 6.9E-28 178.6 12.5 141 3-152 12-183 (230)
61 cd03258 ABC_MetN_methionine_tr 99.9 5.5E-23 1.2E-27 177.0 13.7 139 3-150 32-207 (233)
62 cd03296 ABC_CysA_sulfate_impor 99.9 3.3E-23 7.1E-28 179.2 12.3 129 3-136 29-193 (239)
63 cd03263 ABC_subfamily_A The AB 99.9 4.3E-23 9.3E-28 176.1 12.6 139 3-151 29-199 (220)
64 TIGR02315 ABC_phnC phosphonate 99.9 3.1E-23 6.8E-28 179.4 11.9 140 3-151 29-213 (243)
65 PRK13538 cytochrome c biogenes 99.9 7.2E-23 1.6E-27 173.2 13.9 129 3-136 28-185 (204)
66 PRK11629 lolD lipoprotein tran 99.9 9.3E-23 2E-27 175.8 14.7 129 3-136 36-202 (233)
67 TIGR03258 PhnT 2-aminoethylpho 99.9 3.7E-23 8E-28 189.4 12.9 139 3-150 32-205 (362)
68 PRK11000 maltose/maltodextrin 99.9 6.1E-23 1.3E-27 188.6 14.2 129 3-136 30-190 (369)
69 PRK11432 fbpC ferric transport 99.9 5.1E-23 1.1E-27 187.9 13.6 141 3-152 33-205 (351)
70 cd03264 ABC_drug_resistance_li 99.9 4.2E-23 9E-28 175.2 12.1 127 4-136 27-185 (211)
71 cd03297 ABC_ModC_molybdenum_tr 99.9 4.3E-23 9.3E-28 175.6 12.1 129 3-136 24-188 (214)
72 cd03235 ABC_Metallic_Cations A 99.9 2E-23 4.3E-28 177.4 10.0 141 3-152 26-200 (213)
73 cd03256 ABC_PhnC_transporter A 99.9 4.6E-23 1E-27 178.1 12.5 139 3-150 28-211 (241)
74 TIGR01186 proV glycine betaine 99.9 5.8E-23 1.3E-27 188.0 13.7 141 3-152 20-198 (363)
75 PRK13540 cytochrome c biogenes 99.9 1.5E-22 3.3E-27 170.7 15.3 129 3-136 28-183 (200)
76 PRK09493 glnQ glutamine ABC tr 99.9 4.5E-23 9.8E-28 178.4 12.3 139 3-150 28-202 (240)
77 cd03224 ABC_TM1139_LivF_branch 99.9 4.8E-23 1E-27 175.9 12.3 140 3-151 27-199 (222)
78 PRK13543 cytochrome c biogenes 99.9 1.1E-22 2.3E-27 173.4 13.9 141 3-152 38-205 (214)
79 cd03295 ABC_OpuCA_Osmoprotecti 99.9 6.8E-23 1.5E-27 177.5 12.7 129 3-136 28-192 (242)
80 TIGR02211 LolD_lipo_ex lipopro 99.9 1E-22 2.2E-27 173.8 13.4 129 3-136 32-198 (221)
81 PRK11247 ssuB aliphatic sulfon 99.9 5.9E-23 1.3E-27 180.0 12.1 141 3-152 39-202 (257)
82 PRK10851 sulfate/thiosulfate t 99.9 8.6E-23 1.9E-27 186.5 13.6 141 3-152 29-205 (353)
83 cd03294 ABC_Pro_Gly_Bertaine T 99.9 5.9E-23 1.3E-27 181.0 12.1 139 3-150 51-227 (269)
84 PRK13647 cbiO cobalt transport 99.9 4.6E-23 1E-27 182.1 11.5 141 3-152 32-206 (274)
85 PRK11300 livG leucine/isoleuci 99.9 1.7E-23 3.6E-28 182.5 8.4 140 3-151 32-221 (255)
86 TIGR03740 galliderm_ABC gallid 99.9 1.8E-22 4E-27 172.7 14.5 141 3-152 27-192 (223)
87 TIGR01189 ccmA heme ABC export 99.9 2.2E-22 4.7E-27 169.4 14.6 129 3-136 27-183 (198)
88 TIGR03608 L_ocin_972_ABC putat 99.9 1.9E-22 4.2E-27 170.2 14.3 129 3-136 25-190 (206)
89 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.1E-22 4.5E-27 173.9 14.6 129 3-136 28-189 (236)
90 PRK09452 potA putrescine/sperm 99.9 1.1E-22 2.4E-27 187.1 13.6 129 3-136 41-201 (375)
91 TIGR01277 thiQ thiamine ABC tr 99.9 8.2E-23 1.8E-27 173.8 11.8 129 3-136 25-185 (213)
92 PRK13651 cobalt transporter AT 99.9 1.3E-23 2.9E-28 188.4 7.3 141 3-152 34-233 (305)
93 PRK11264 putative amino-acid A 99.9 1.3E-22 2.8E-27 176.4 13.2 139 3-150 30-210 (250)
94 PRK13641 cbiO cobalt transport 99.9 6.1E-23 1.3E-27 182.5 11.4 143 3-154 34-215 (287)
95 TIGR03411 urea_trans_UrtD urea 99.9 1.3E-22 2.9E-27 175.5 13.1 140 3-152 29-210 (242)
96 PRK13637 cbiO cobalt transport 99.9 7.3E-23 1.6E-27 182.0 11.6 141 3-152 34-213 (287)
97 PRK10895 lipopolysaccharide AB 99.9 1.1E-22 2.4E-27 176.1 12.4 129 3-136 30-193 (241)
98 PRK13643 cbiO cobalt transport 99.9 1.3E-23 2.7E-28 187.0 6.7 141 3-152 33-212 (288)
99 COG1118 CysA ABC-type sulfate/ 99.9 2.6E-23 5.5E-28 182.6 8.3 145 3-156 29-210 (345)
100 PRK11831 putative ABC transpor 99.9 1.4E-22 3.1E-27 178.5 13.0 141 3-152 34-212 (269)
101 PRK10070 glycine betaine trans 99.9 1.5E-22 3.3E-27 187.4 13.5 141 3-152 55-233 (400)
102 cd03237 ABC_RNaseL_inhibitor_d 99.9 1E-22 2.3E-27 177.4 11.7 141 3-152 26-184 (246)
103 PRK13541 cytochrome c biogenes 99.9 5.3E-22 1.1E-26 166.8 15.4 129 3-136 27-179 (195)
104 PRK11144 modC molybdate transp 99.9 1.2E-22 2.6E-27 185.6 12.4 129 3-136 25-185 (352)
105 TIGR02142 modC_ABC molybdenum 99.9 1.3E-22 2.8E-27 185.5 12.6 141 3-152 24-200 (354)
106 PRK11124 artP arginine transpo 99.9 2.9E-22 6.3E-27 173.5 13.7 129 3-136 29-197 (242)
107 cd03257 ABC_NikE_OppD_transpor 99.9 1.8E-22 3.9E-27 172.8 12.2 129 3-136 32-202 (228)
108 TIGR03410 urea_trans_UrtE urea 99.9 1.6E-22 3.6E-27 173.7 11.8 139 3-150 27-198 (230)
109 PRK13548 hmuV hemin importer A 99.9 2.1E-22 4.5E-27 176.4 12.5 141 3-152 29-209 (258)
110 PRK10771 thiQ thiamine transpo 99.9 1.6E-22 3.5E-27 174.1 11.6 139 3-150 26-196 (232)
111 PRK13638 cbiO cobalt transport 99.9 2.9E-23 6.3E-28 183.0 6.9 141 3-152 28-204 (271)
112 PRK13539 cytochrome c biogenes 99.9 6E-22 1.3E-26 168.0 14.6 129 3-136 29-183 (207)
113 cd03267 ABC_NatA_like Similar 99.9 4.3E-22 9.3E-27 172.2 13.9 139 3-150 48-220 (236)
114 PRK13652 cbiO cobalt transport 99.9 2.1E-22 4.6E-27 178.2 12.1 141 3-152 31-206 (277)
115 PRK10584 putative ABC transpor 99.9 5.8E-22 1.3E-26 170.1 14.5 129 3-136 37-203 (228)
116 PRK11607 potG putrescine trans 99.9 3.9E-22 8.5E-27 183.6 14.2 141 3-152 46-218 (377)
117 PRK13646 cbiO cobalt transport 99.9 3.3E-23 7.2E-28 184.1 6.9 141 3-152 34-214 (286)
118 TIGR03415 ABC_choXWV_ATP choli 99.9 2.9E-22 6.4E-27 184.4 13.4 142 3-153 51-234 (382)
119 PRK11614 livF leucine/isoleuci 99.9 1.8E-22 3.8E-27 174.4 11.1 140 3-151 32-204 (237)
120 PRK13634 cbiO cobalt transport 99.9 1.7E-22 3.6E-27 180.0 11.3 141 3-152 34-214 (290)
121 PRK13649 cbiO cobalt transport 99.9 1.9E-22 4.1E-27 178.5 11.4 141 3-152 34-213 (280)
122 PRK10762 D-ribose transporter 99.9 2.9E-22 6.2E-27 190.7 13.4 129 3-136 31-197 (501)
123 TIGR03771 anch_rpt_ABC anchore 99.9 6.8E-22 1.5E-26 169.5 14.3 141 3-152 7-181 (223)
124 PRK13650 cbiO cobalt transport 99.9 3.3E-22 7.2E-27 177.1 12.7 129 3-136 34-197 (279)
125 COG3845 ABC-type uncharacteriz 99.9 3E-22 6.5E-27 185.0 12.8 145 3-154 31-210 (501)
126 PRK13631 cbiO cobalt transport 99.9 4E-23 8.6E-28 186.5 6.8 141 3-152 53-244 (320)
127 PRK13639 cbiO cobalt transport 99.9 2.4E-22 5.1E-27 177.7 11.6 141 3-152 29-205 (275)
128 COG1137 YhbG ABC-type (unclass 99.9 3.1E-23 6.8E-28 172.4 5.4 141 3-152 31-207 (243)
129 PRK10619 histidine/lysine/argi 99.9 2.7E-22 5.9E-27 175.3 11.6 129 3-136 32-208 (257)
130 PRK15112 antimicrobial peptide 99.9 3.4E-22 7.4E-27 175.9 12.0 140 3-150 40-216 (267)
131 PRK15079 oligopeptide ABC tran 99.9 4.1E-22 8.9E-27 180.6 12.8 142 3-152 48-230 (331)
132 TIGR02770 nickel_nikD nickel i 99.9 3.6E-22 7.8E-27 171.9 11.8 139 3-150 13-192 (230)
133 PRK10575 iron-hydroxamate tran 99.9 2.9E-22 6.2E-27 176.1 11.4 141 3-152 38-216 (265)
134 TIGR01978 sufC FeS assembly AT 99.9 5E-22 1.1E-26 171.8 12.7 130 3-136 27-200 (243)
135 TIGR01187 potA spermidine/putr 99.9 2.8E-22 6E-27 181.3 11.5 137 7-152 1-169 (325)
136 TIGR02769 nickel_nikE nickel i 99.9 5.7E-22 1.2E-26 174.2 13.2 139 3-150 38-217 (265)
137 cd03215 ABC_Carb_Monos_II This 99.9 8.2E-22 1.8E-26 164.0 13.4 125 3-152 27-172 (182)
138 PRK15439 autoinducer 2 ABC tra 99.9 4.7E-22 1E-26 189.7 13.6 129 3-136 38-196 (510)
139 cd03230 ABC_DR_subfamily_A Thi 99.9 8.5E-22 1.8E-26 162.6 13.2 109 3-136 27-151 (173)
140 PRK11231 fecE iron-dicitrate t 99.9 3.6E-22 7.9E-27 174.4 11.6 141 3-152 29-206 (255)
141 PRK14250 phosphate ABC transpo 99.9 3.7E-22 8E-27 173.0 11.3 139 3-150 30-198 (241)
142 PRK13636 cbiO cobalt transport 99.9 4.7E-22 1E-26 176.5 11.9 141 3-152 33-210 (283)
143 cd03260 ABC_PstB_phosphate_tra 99.9 3.5E-22 7.7E-27 171.3 10.7 140 3-150 27-206 (227)
144 PRK10253 iron-enterobactin tra 99.9 4.6E-22 1E-26 174.8 11.6 141 3-152 34-212 (265)
145 COG4598 HisP ABC-type histidin 99.9 1.7E-22 3.7E-27 165.8 8.1 128 4-136 34-208 (256)
146 TIGR03873 F420-0_ABC_ATP propo 99.9 5.8E-22 1.2E-26 173.2 12.1 141 3-152 28-205 (256)
147 COG1117 PstB ABC-type phosphat 99.9 8.3E-22 1.8E-26 165.4 12.1 140 3-150 34-214 (253)
148 TIGR03005 ectoine_ehuA ectoine 99.9 1.3E-21 2.7E-26 170.6 13.6 129 3-136 27-203 (252)
149 cd03300 ABC_PotA_N PotA is an 99.9 9.7E-22 2.1E-26 169.4 12.7 129 3-136 27-187 (232)
150 TIGR02982 heterocyst_DevA ABC 99.9 1.3E-21 2.9E-26 167.2 13.4 129 3-136 32-198 (220)
151 PRK11308 dppF dipeptide transp 99.9 1.5E-22 3.1E-27 183.3 7.8 142 3-152 42-223 (327)
152 PRK09700 D-allose transporter 99.9 7.8E-22 1.7E-26 188.1 13.2 129 3-136 32-201 (510)
153 PRK13549 xylose transporter AT 99.9 8.5E-22 1.8E-26 187.7 13.5 129 3-136 32-199 (506)
154 cd03214 ABC_Iron-Siderophores_ 99.9 4.5E-22 9.8E-27 165.2 10.2 124 3-136 26-154 (180)
155 cd03299 ABC_ModC_like Archeal 99.9 7.2E-22 1.6E-26 170.6 11.8 129 3-136 26-186 (235)
156 PRK13546 teichoic acids export 99.9 1.5E-21 3.1E-26 171.9 13.8 141 3-152 51-211 (264)
157 PRK13645 cbiO cobalt transport 99.9 5E-22 1.1E-26 176.7 10.7 141 3-152 38-219 (289)
158 TIGR00968 3a0106s01 sulfate AB 99.9 1.1E-21 2.4E-26 169.6 12.6 141 3-152 27-199 (237)
159 PRK13644 cbiO cobalt transport 99.9 1.5E-21 3.3E-26 172.5 13.6 129 3-136 29-192 (274)
160 TIGR02324 CP_lyasePhnL phospho 99.9 1.4E-21 3E-26 167.3 12.9 130 3-136 35-205 (224)
161 cd03234 ABCG_White The White s 99.9 1.9E-21 4.1E-26 166.9 13.7 129 3-136 34-199 (226)
162 PRK13635 cbiO cobalt transport 99.9 1.6E-21 3.5E-26 172.7 13.6 129 3-136 34-197 (279)
163 COG0410 LivF ABC-type branched 99.9 1.3E-21 2.8E-26 166.0 12.3 131 3-136 30-193 (237)
164 COG4175 ProV ABC-type proline/ 99.9 2.7E-22 5.9E-27 176.7 8.2 158 3-169 55-251 (386)
165 PRK13632 cbiO cobalt transport 99.9 1.4E-21 3E-26 172.3 12.7 129 3-136 36-199 (271)
166 PRK10982 galactose/methyl gala 99.9 1.3E-21 2.9E-26 185.7 13.5 129 3-136 25-190 (491)
167 cd03229 ABC_Class3 This class 99.9 7.7E-22 1.7E-26 163.6 10.3 117 3-136 27-157 (178)
168 PRK10938 putative molybdenum t 99.9 7.6E-22 1.6E-26 187.3 11.6 129 3-136 30-191 (490)
169 COG1129 MglA ABC-type sugar tr 99.9 1.7E-21 3.7E-26 182.5 13.5 143 3-154 35-215 (500)
170 TIGR00972 3a0107s01c2 phosphat 99.9 1.6E-21 3.4E-26 169.5 12.3 138 3-150 28-209 (247)
171 PRK09544 znuC high-affinity zi 99.9 1.2E-21 2.7E-26 171.0 11.5 141 3-152 31-189 (251)
172 PRK11288 araG L-arabinose tran 99.9 1.7E-21 3.7E-26 185.5 13.3 129 3-136 31-196 (501)
173 PRK09700 D-allose transporter 99.9 1.7E-21 3.7E-26 185.8 13.3 141 3-152 290-477 (510)
174 PRK13648 cbiO cobalt transport 99.9 3.2E-21 7E-26 169.8 13.9 129 3-136 36-199 (269)
175 cd03213 ABCG_EPDR ABCG transpo 99.9 2.5E-21 5.5E-26 162.7 12.6 116 3-136 36-167 (194)
176 PRK14247 phosphate ABC transpo 99.9 2.2E-21 4.7E-26 168.8 12.6 140 3-150 30-211 (250)
177 PRK09984 phosphonate/organopho 99.9 1.7E-21 3.6E-26 170.8 11.6 139 3-150 31-219 (262)
178 cd03246 ABCC_Protease_Secretio 99.9 4.2E-21 9.1E-26 158.4 13.4 108 3-136 29-152 (173)
179 PRK11701 phnK phosphonate C-P 99.9 3.3E-21 7.2E-26 168.6 13.3 139 3-150 33-218 (258)
180 PRK10247 putative ABC transpor 99.9 4.8E-21 1E-25 164.4 14.0 129 3-136 34-194 (225)
181 COG4586 ABC-type uncharacteriz 99.9 9.8E-22 2.1E-26 170.2 9.4 154 3-165 51-238 (325)
182 PRK11288 araG L-arabinose tran 99.9 2.1E-21 4.6E-26 184.8 12.7 141 3-152 280-464 (501)
183 PRK13547 hmuV hemin importer A 99.9 2.5E-21 5.5E-26 171.0 11.9 141 3-152 28-223 (272)
184 PRK13545 tagH teichoic acids e 99.9 1.9E-21 4E-26 184.0 11.6 142 3-153 51-212 (549)
185 PRK15439 autoinducer 2 ABC tra 99.9 3.4E-21 7.4E-26 183.8 13.6 141 3-152 290-471 (510)
186 PRK13640 cbiO cobalt transport 99.9 3.7E-21 8.1E-26 170.6 12.7 129 3-136 34-200 (282)
187 PRK10418 nikD nickel transport 99.9 6.8E-21 1.5E-25 166.3 14.1 141 3-150 30-207 (254)
188 PRK15056 manganese/iron transp 99.9 4.1E-21 8.9E-26 169.4 12.7 141 3-152 34-210 (272)
189 PRK10762 D-ribose transporter 99.9 3.1E-21 6.7E-26 183.7 12.9 141 3-152 279-463 (501)
190 PRK13549 xylose transporter AT 99.9 2.5E-21 5.4E-26 184.5 12.2 141 3-152 289-473 (506)
191 COG1123 ATPase components of v 99.9 7E-22 1.5E-26 186.2 8.1 142 3-152 318-498 (539)
192 PRK14242 phosphate transporter 99.9 2.2E-21 4.7E-26 169.1 10.7 130 3-136 33-204 (253)
193 TIGR02323 CP_lyasePhnK phospho 99.9 6.9E-21 1.5E-25 166.0 13.8 129 3-136 30-205 (253)
194 PRK14241 phosphate transporter 99.9 4.2E-21 9.2E-26 167.9 12.4 140 3-150 31-213 (258)
195 PRK03695 vitamin B12-transport 99.9 4E-21 8.6E-26 167.4 12.0 142 3-152 23-201 (248)
196 COG4148 ModC ABC-type molybdat 99.9 2.9E-22 6.4E-27 174.0 4.8 169 3-178 25-223 (352)
197 PRK10419 nikE nickel transport 99.9 4.3E-21 9.2E-26 169.1 12.1 141 3-152 39-220 (268)
198 PRK11022 dppD dipeptide transp 99.9 5.8E-21 1.3E-25 172.8 13.3 142 3-152 34-222 (326)
199 cd03233 ABC_PDR_domain1 The pl 99.9 4.5E-21 9.8E-26 162.2 11.8 122 3-136 34-175 (202)
200 PRK13633 cobalt transporter AT 99.9 7.4E-22 1.6E-26 174.9 7.2 129 3-136 37-201 (280)
201 cd03245 ABCC_bacteriocin_expor 99.9 1.8E-21 3.9E-26 166.0 9.3 130 3-136 31-195 (220)
202 cd03251 ABCC_MsbA MsbA is an e 99.9 3.6E-21 7.7E-26 165.7 11.2 128 3-136 29-193 (234)
203 PRK14267 phosphate ABC transpo 99.9 8.4E-21 1.8E-25 165.4 13.3 140 3-150 31-214 (253)
204 cd03216 ABC_Carb_Monos_I This 99.9 5.2E-21 1.1E-25 156.6 11.0 109 3-136 27-138 (163)
205 COG4181 Predicted ABC-type tra 99.9 6.6E-21 1.4E-25 155.3 11.4 130 4-136 38-203 (228)
206 cd03232 ABC_PDR_domain2 The pl 99.8 1.2E-20 2.6E-25 158.2 13.4 116 3-136 34-164 (192)
207 PRK13642 cbiO cobalt transport 99.8 9.7E-21 2.1E-25 167.5 13.4 129 3-136 34-197 (277)
208 PRK14273 phosphate ABC transpo 99.8 3.7E-21 8E-26 167.8 10.6 130 3-136 34-205 (254)
209 PRK15093 antimicrobial peptide 99.8 7.9E-21 1.7E-25 172.2 13.1 142 3-152 34-227 (330)
210 PRK10261 glutathione transport 99.8 4.3E-21 9.3E-26 187.2 12.1 142 3-152 351-532 (623)
211 PRK14268 phosphate ABC transpo 99.8 1.4E-20 3E-25 164.8 13.9 140 3-150 39-219 (258)
212 cd03236 ABC_RNaseL_inhibitor_d 99.8 7.9E-21 1.7E-25 166.4 12.5 141 3-152 27-207 (255)
213 TIGR02633 xylG D-xylose ABC tr 99.8 7.8E-21 1.7E-25 180.8 13.4 130 3-136 28-197 (500)
214 CHL00131 ycf16 sulfate ABC tra 99.8 9.5E-21 2.1E-25 164.9 12.6 130 3-136 34-207 (252)
215 cd03252 ABCC_Hemolysin The ABC 99.8 1.2E-20 2.5E-25 162.9 13.0 130 3-136 29-193 (237)
216 TIGR02633 xylG D-xylose ABC tr 99.8 7.2E-21 1.6E-25 181.0 12.8 141 3-152 287-471 (500)
217 PRK09473 oppD oligopeptide tra 99.8 9.6E-21 2.1E-25 171.6 12.9 130 3-136 43-218 (330)
218 cd03222 ABC_RNaseL_inhibitor T 99.8 7.7E-21 1.7E-25 157.9 10.9 98 3-136 26-128 (177)
219 TIGR03269 met_CoM_red_A2 methy 99.8 2.3E-21 5E-26 185.3 8.8 143 3-152 311-496 (520)
220 COG1134 TagH ABC-type polysacc 99.8 3.1E-21 6.7E-26 165.0 8.5 145 3-154 54-217 (249)
221 PRK10744 pstB phosphate transp 99.8 9.5E-21 2.1E-25 165.9 11.6 140 3-150 40-221 (260)
222 PRK14256 phosphate ABC transpo 99.8 1.2E-20 2.5E-25 164.5 11.9 142 3-152 31-215 (252)
223 PRK15134 microcin C ABC transp 99.8 7.6E-21 1.7E-25 182.1 11.5 131 3-136 36-213 (529)
224 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 8.6E-21 1.9E-25 163.8 10.7 128 3-136 30-194 (238)
225 cd03228 ABCC_MRP_Like The MRP 99.8 1.6E-20 3.5E-25 154.7 11.7 112 3-136 29-151 (171)
226 cd03254 ABCC_Glucan_exporter_l 99.8 1.7E-20 3.8E-25 160.9 12.4 130 3-136 30-194 (229)
227 PRK10261 glutathione transport 99.8 3.6E-21 7.8E-26 187.7 9.2 147 3-156 43-241 (623)
228 TIGR01257 rim_protein retinal- 99.8 1.1E-20 2.3E-25 200.7 13.3 145 3-156 1966-2142(2272)
229 PRK14251 phosphate ABC transpo 99.8 2.1E-20 4.6E-25 162.7 13.0 140 3-150 31-212 (251)
230 PRK14259 phosphate ABC transpo 99.8 1.4E-20 3E-25 165.9 11.9 141 3-151 40-220 (269)
231 PRK14269 phosphate ABC transpo 99.8 2.4E-20 5.1E-25 162.1 13.1 130 3-136 29-197 (246)
232 PRK14235 phosphate transporter 99.8 1.7E-20 3.7E-25 165.1 12.1 130 3-136 46-218 (267)
233 COG1119 ModF ABC-type molybden 99.8 3E-20 6.5E-25 159.0 13.0 135 5-148 60-237 (257)
234 cd03253 ABCC_ATM1_transporter 99.8 2.6E-20 5.7E-25 160.5 12.9 130 3-136 28-192 (236)
235 PRK13409 putative ATPase RIL; 99.8 1.1E-20 2.4E-25 182.9 11.6 140 3-152 366-522 (590)
236 PRK14270 phosphate ABC transpo 99.8 2.2E-20 4.9E-25 162.6 12.4 140 3-150 31-212 (251)
237 TIGR03269 met_CoM_red_A2 methy 99.8 1.3E-20 2.7E-25 180.2 11.7 129 3-136 27-225 (520)
238 PRK14262 phosphate ABC transpo 99.8 2.5E-20 5.4E-25 162.1 12.5 130 3-136 30-201 (250)
239 PRK14245 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 162.1 12.4 140 3-150 30-211 (250)
240 cd03248 ABCC_TAP TAP, the Tran 99.8 2E-20 4.3E-25 160.3 11.4 128 3-136 41-205 (226)
241 PRK14248 phosphate ABC transpo 99.8 2.1E-20 4.5E-25 164.5 11.7 130 3-136 48-219 (268)
242 COG4525 TauB ABC-type taurine 99.8 2.5E-20 5.3E-25 154.8 11.4 129 4-136 33-189 (259)
243 PRK10982 galactose/methyl gala 99.8 1.6E-20 3.5E-25 178.3 11.8 141 3-152 275-459 (491)
244 PRK14274 phosphate ABC transpo 99.8 2.4E-20 5.2E-25 163.2 12.0 130 3-136 39-210 (259)
245 cd03290 ABCC_SUR1_N The SUR do 99.8 2.4E-20 5.2E-25 159.1 11.7 132 3-136 28-198 (218)
246 PRK13409 putative ATPase RIL; 99.8 9.9E-21 2.2E-25 183.3 10.4 128 3-136 100-267 (590)
247 PRK15177 Vi polysaccharide exp 99.8 4.7E-20 1E-24 157.3 13.4 138 3-150 14-169 (213)
248 cd03247 ABCC_cytochrome_bd The 99.8 2.4E-20 5.2E-25 154.5 11.2 110 3-136 29-153 (178)
249 PRK09580 sufC cysteine desulfu 99.8 4E-20 8.7E-25 160.5 12.9 130 3-136 28-201 (248)
250 PRK14263 phosphate ABC transpo 99.8 3.2E-20 6.9E-25 162.9 12.3 142 3-152 35-216 (261)
251 PRK14244 phosphate ABC transpo 99.8 3.4E-20 7.3E-25 161.5 12.3 130 3-136 32-204 (251)
252 cd03217 ABC_FeS_Assembly ABC-t 99.8 4E-20 8.6E-25 156.1 12.2 120 3-136 27-160 (200)
253 PRK14240 phosphate transporter 99.8 3.2E-20 7E-25 161.4 11.7 130 3-136 30-201 (250)
254 PRK14237 phosphate transporter 99.8 2.5E-20 5.4E-25 164.0 10.9 140 3-150 47-228 (267)
255 PRK14239 phosphate transporter 99.8 3.6E-20 7.8E-25 161.2 11.8 140 3-150 32-213 (252)
256 PRK14249 phosphate ABC transpo 99.8 4E-20 8.7E-25 161.0 12.1 140 3-150 31-212 (251)
257 cd03250 ABCC_MRP_domain1 Domai 99.8 5.7E-20 1.2E-24 155.2 12.6 131 3-136 32-184 (204)
258 COG1101 PhnK ABC-type uncharac 99.8 1.1E-20 2.3E-25 158.9 8.0 155 4-163 34-228 (263)
259 PRK15134 microcin C ABC transp 99.8 1.7E-20 3.6E-25 179.7 10.5 140 3-152 313-494 (529)
260 cd03244 ABCC_MRP_domain2 Domai 99.8 2.7E-20 5.9E-25 158.9 10.6 130 3-136 31-194 (221)
261 PRK14254 phosphate ABC transpo 99.8 6.7E-20 1.4E-24 162.9 13.4 141 3-151 66-246 (285)
262 PRK14258 phosphate ABC transpo 99.8 4.7E-20 1E-24 161.7 12.1 143 3-152 34-219 (261)
263 TIGR01257 rim_protein retinal- 99.8 4E-20 8.6E-25 196.4 13.7 142 3-154 957-1130(2272)
264 PRK14272 phosphate ABC transpo 99.8 6.2E-20 1.3E-24 159.7 12.4 140 3-150 31-213 (252)
265 cd03369 ABCC_NFT1 Domain 2 of 99.8 9.8E-20 2.1E-24 154.1 13.2 124 3-136 35-180 (207)
266 PLN03211 ABC transporter G-25; 99.8 2.6E-20 5.5E-25 182.5 11.0 131 3-136 95-262 (659)
267 PRK14236 phosphate transporter 99.8 5.9E-20 1.3E-24 162.1 12.2 130 3-136 52-223 (272)
268 PRK14246 phosphate ABC transpo 99.8 7.9E-20 1.7E-24 160.1 12.6 140 3-150 37-218 (257)
269 PRK14253 phosphate ABC transpo 99.8 6.8E-20 1.5E-24 159.3 12.0 140 3-150 30-210 (249)
270 PRK14238 phosphate transporter 99.8 5.6E-20 1.2E-24 162.2 11.6 140 3-150 51-232 (271)
271 COG4133 CcmA ABC-type transpor 99.8 1.7E-19 3.8E-24 148.7 13.6 126 4-134 30-184 (209)
272 PRK14260 phosphate ABC transpo 99.8 1.1E-19 2.5E-24 159.0 13.4 142 3-152 34-217 (259)
273 cd03223 ABCD_peroxisomal_ALDP 99.8 7.3E-20 1.6E-24 150.3 11.4 111 3-136 28-144 (166)
274 PRK15064 ABC transporter ATP-b 99.8 5.3E-20 1.1E-24 176.4 11.7 139 3-152 28-220 (530)
275 PRK14275 phosphate ABC transpo 99.8 9.2E-20 2E-24 162.1 12.1 140 3-150 66-247 (286)
276 PRK14243 phosphate transporter 99.8 5.7E-20 1.2E-24 161.5 10.2 142 3-152 37-218 (264)
277 PRK14271 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 160.4 12.4 140 3-150 48-228 (276)
278 COG4608 AppF ABC-type oligopep 99.8 1E-19 2.2E-24 158.2 11.1 122 3-136 40-166 (268)
279 COG2274 SunT ABC-type bacterio 99.8 7.1E-20 1.5E-24 179.6 11.3 123 4-136 501-664 (709)
280 PRK14261 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 157.4 12.3 130 3-136 33-204 (253)
281 PRK14265 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 159.8 11.7 140 3-150 47-226 (274)
282 PRK14255 phosphate ABC transpo 99.8 2.1E-19 4.5E-24 156.5 12.4 130 3-136 32-203 (252)
283 PRK11174 cysteine/glutathione 99.8 2.3E-19 5E-24 173.7 13.4 129 3-136 377-540 (588)
284 PRK11176 lipid transporter ATP 99.8 1.9E-19 4.1E-24 174.1 12.5 130 3-136 370-535 (582)
285 COG4988 CydD ABC-type transpor 99.8 2.6E-19 5.7E-24 168.7 12.8 130 3-136 348-511 (559)
286 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 1.5E-19 3.3E-24 145.2 9.6 94 3-136 27-123 (144)
287 TIGR02868 CydC thiol reductant 99.8 1.9E-19 4E-24 172.4 11.8 130 3-136 362-525 (529)
288 PRK14264 phosphate ABC transpo 99.8 4.5E-19 9.7E-24 159.0 13.4 140 3-150 72-265 (305)
289 PRK14266 phosphate ABC transpo 99.8 4E-19 8.7E-24 154.5 12.7 130 3-136 30-201 (250)
290 PRK10938 putative molybdenum t 99.8 5E-19 1.1E-23 168.0 14.2 129 3-136 287-458 (490)
291 TIGR01842 type_I_sec_PrtD type 99.8 4.1E-19 8.8E-24 170.7 13.6 129 3-136 345-510 (544)
292 PRK14252 phosphate ABC transpo 99.8 2.3E-19 5.1E-24 157.6 10.9 130 3-136 43-216 (265)
293 COG0488 Uup ATPase components 99.8 3E-19 6.5E-24 170.2 12.4 133 3-145 30-214 (530)
294 TIGR02857 CydD thiol reductant 99.8 3E-19 6.4E-24 170.9 12.3 130 3-136 349-513 (529)
295 cd00267 ABC_ATPase ABC (ATP-bi 99.8 3.8E-19 8.3E-24 144.2 10.9 117 3-149 26-145 (157)
296 PRK15064 ABC transporter ATP-b 99.8 3.1E-19 6.8E-24 171.0 12.2 136 3-150 346-501 (530)
297 PRK11819 putative ABC transpor 99.8 3.2E-19 7E-24 171.9 12.2 135 3-150 34-226 (556)
298 COG4161 ArtP ABC-type arginine 99.8 5.4E-19 1.2E-23 143.1 11.4 128 4-136 30-197 (242)
299 PRK11160 cysteine/glutathione 99.8 4.9E-19 1.1E-23 171.3 12.8 130 3-136 367-530 (574)
300 cd03288 ABCC_SUR2 The SUR doma 99.8 7.5E-19 1.6E-23 153.7 12.7 128 3-136 48-211 (257)
301 PRK10790 putative multidrug tr 99.8 5E-19 1.1E-23 171.5 12.7 130 3-136 368-531 (592)
302 COG1123 ATPase components of v 99.8 1.2E-19 2.6E-24 171.2 7.9 142 3-152 36-223 (539)
303 cd03238 ABC_UvrA The excision 99.8 1.1E-18 2.4E-23 144.9 12.8 116 3-136 22-145 (176)
304 TIGR00955 3a01204 The Eye Pigm 99.8 2.9E-19 6.2E-24 174.2 10.8 131 3-136 52-222 (617)
305 PRK14257 phosphate ABC transpo 99.8 4.9E-19 1.1E-23 160.4 11.4 139 3-149 109-289 (329)
306 TIGR03375 type_I_sec_LssB type 99.8 5.1E-19 1.1E-23 174.5 12.3 130 3-136 492-656 (694)
307 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 8.3E-20 1.8E-24 180.5 6.5 128 3-136 506-668 (710)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 6.4E-19 1.4E-23 169.7 12.2 125 3-136 32-214 (552)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 5.1E-19 1.1E-23 170.4 11.4 135 3-150 349-506 (552)
310 COG0444 DppD ABC-type dipeptid 99.8 1.8E-19 3.9E-24 159.8 7.6 141 3-151 32-221 (316)
311 PRK11819 putative ABC transpor 99.8 4.7E-19 1E-23 170.8 11.1 135 3-150 351-508 (556)
312 PRK13657 cyclic beta-1,2-gluca 99.8 8.8E-19 1.9E-23 169.8 13.0 130 3-136 362-526 (588)
313 PRK11147 ABC transporter ATPas 99.8 5.7E-19 1.2E-23 172.7 11.6 125 3-136 346-493 (635)
314 COG4172 ABC-type uncharacteriz 99.8 1.6E-19 3.4E-24 163.7 7.1 128 4-136 315-483 (534)
315 PRK10636 putative ABC transpor 99.8 5.5E-19 1.2E-23 172.8 11.4 126 3-136 339-483 (638)
316 TIGR02203 MsbA_lipidA lipid A 99.8 8.3E-19 1.8E-23 169.1 12.5 130 3-136 359-524 (571)
317 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.2E-18 2.5E-23 154.8 12.4 130 3-136 64-215 (282)
318 PRK10535 macrolide transporter 99.8 1.3E-18 2.9E-23 170.4 14.0 129 3-136 35-200 (648)
319 cd03289 ABCC_CFTR2 The CFTR su 99.8 6.6E-19 1.4E-23 155.9 10.2 129 3-136 31-193 (275)
320 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.2E-18 2.6E-23 167.9 12.6 132 3-136 369-527 (555)
321 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.4E-18 3.1E-23 171.1 13.1 128 3-136 480-641 (686)
322 KOG0059 Lipid exporter ABCA1 a 99.8 7.6E-19 1.6E-23 177.1 11.2 157 3-168 592-783 (885)
323 TIGR02204 MsbA_rel ABC transpo 99.8 1.4E-18 3.1E-23 167.7 12.4 130 3-136 367-531 (576)
324 PRK10789 putative multidrug tr 99.8 1.4E-18 3E-23 168.0 12.2 130 3-136 342-506 (569)
325 PRK10636 putative ABC transpor 99.8 1.5E-18 3.3E-23 169.7 12.3 126 3-136 28-202 (638)
326 TIGR01192 chvA glucan exporter 99.8 2E-18 4.2E-23 167.4 12.9 130 3-136 362-526 (585)
327 PRK10522 multidrug transporter 99.8 1.7E-18 3.6E-23 166.6 12.2 131 3-136 350-506 (547)
328 COG1132 MdlB ABC-type multidru 99.8 2.2E-18 4.7E-23 166.4 12.7 130 3-136 356-520 (567)
329 TIGR01193 bacteriocin_ABC ABC- 99.8 1.2E-18 2.5E-23 172.3 11.1 129 3-136 501-665 (708)
330 PF00005 ABC_tran: ABC transpo 99.8 5.7E-19 1.2E-23 139.4 7.0 105 3-109 12-137 (137)
331 TIGR01846 type_I_sec_HlyB type 99.8 2.2E-18 4.7E-23 170.1 12.7 130 3-136 484-648 (694)
332 COG4674 Uncharacterized ABC-ty 99.8 7.5E-19 1.6E-23 145.9 7.9 137 4-145 33-210 (249)
333 KOG0061 Transporter, ABC super 99.8 1.6E-18 3.6E-23 168.4 11.5 133 3-138 57-229 (613)
334 PRK11147 ABC transporter ATPas 99.8 2E-18 4.3E-23 168.8 12.1 124 3-136 30-209 (635)
335 TIGR00958 3a01208 Conjugate Tr 99.8 2.3E-18 5E-23 170.4 11.8 128 3-136 508-670 (711)
336 COG0396 sufC Cysteine desulfur 99.8 6.1E-18 1.3E-22 143.6 12.2 131 3-136 31-200 (251)
337 PLN03140 ABC transporter G fam 99.8 2.7E-18 5.8E-23 180.0 12.1 131 3-136 907-1075(1470)
338 TIGR00956 3a01205 Pleiotropic 99.8 5.2E-18 1.1E-22 177.7 14.0 131 3-136 790-958 (1394)
339 COG4618 ArpD ABC-type protease 99.8 3.6E-18 7.8E-23 158.4 10.4 125 3-136 363-528 (580)
340 KOG0055 Multidrug/pheromone ex 99.8 4.8E-18 1E-22 171.3 11.9 130 3-141 380-550 (1228)
341 COG4619 ABC-type uncharacteriz 99.7 1.7E-17 3.7E-22 135.0 12.3 129 4-136 31-190 (223)
342 COG4167 SapF ABC-type antimicr 99.7 2E-17 4.3E-22 136.4 12.5 131 3-136 40-206 (267)
343 KOG0057 Mitochondrial Fe/S clu 99.7 6.2E-18 1.4E-22 158.0 10.1 131 4-141 380-548 (591)
344 KOG0058 Peptide exporter, ABC 99.7 3E-17 6.5E-22 157.8 14.7 124 3-136 495-659 (716)
345 PTZ00265 multidrug resistance 99.7 1.5E-17 3.1E-22 174.9 13.4 131 3-136 1195-1415(1466)
346 PLN03073 ABC transporter F fam 99.7 8.3E-18 1.8E-22 166.0 9.8 122 3-136 536-680 (718)
347 TIGR00954 3a01203 Peroxysomal 99.7 2.9E-17 6.3E-22 161.2 12.8 127 3-136 479-635 (659)
348 PTZ00265 multidrug resistance 99.7 3.5E-17 7.5E-22 172.0 13.5 131 3-136 412-636 (1466)
349 COG4987 CydC ABC-type transpor 99.7 6E-17 1.3E-21 151.3 12.2 137 4-148 366-537 (573)
350 PLN03232 ABC transporter C fam 99.7 4.3E-17 9.3E-22 172.1 12.7 130 3-136 1263-1426(1495)
351 TIGR00956 3a01205 Pleiotropic 99.7 4.6E-17 9.9E-22 170.7 12.8 131 3-136 88-266 (1394)
352 PLN03140 ABC transporter G fam 99.7 3.4E-17 7.3E-22 171.8 9.8 131 3-136 192-393 (1470)
353 COG4778 PhnL ABC-type phosphon 99.7 4.1E-17 8.8E-22 133.1 8.1 131 3-137 38-209 (235)
354 COG0488 Uup ATPase components 99.7 1.1E-16 2.3E-21 152.8 12.3 133 4-144 350-499 (530)
355 TIGR00957 MRP_assoc_pro multi 99.7 1.4E-16 2.9E-21 168.5 13.4 130 3-136 1313-1476(1522)
356 PLN03130 ABC transporter C fam 99.7 1.1E-16 2.4E-21 169.6 12.7 130 3-136 1266-1429(1622)
357 PTZ00243 ABC transporter; Prov 99.7 1.6E-16 3.5E-21 168.0 13.5 130 3-136 1337-1501(1560)
358 COG4136 ABC-type uncharacteriz 99.7 2.7E-16 5.8E-21 126.0 11.4 130 3-136 29-191 (213)
359 PLN03073 ABC transporter F fam 99.7 2.5E-16 5.4E-21 155.6 11.5 127 3-136 204-397 (718)
360 TIGR01271 CFTR_protein cystic 99.7 3.4E-16 7.3E-21 165.2 12.7 130 3-136 453-604 (1490)
361 COG4615 PvdE ABC-type sideroph 99.7 7E-16 1.5E-20 139.8 12.6 140 3-145 350-513 (546)
362 cd03272 ABC_SMC3_euk Eukaryoti 99.7 7.2E-16 1.6E-20 133.3 12.1 130 3-137 24-218 (243)
363 cd03273 ABC_SMC2_euk Eukaryoti 99.7 2.1E-16 4.4E-21 137.9 7.7 132 3-136 26-225 (251)
364 KOG0055 Multidrug/pheromone ex 99.7 1.1E-15 2.4E-20 154.4 13.5 134 3-139 1017-1185(1228)
365 PLN03130 ABC transporter C fam 99.7 7.1E-16 1.5E-20 163.6 12.8 131 3-136 644-796 (1622)
366 cd03278 ABC_SMC_barmotin Barmo 99.6 9.3E-16 2E-20 129.4 10.8 126 4-136 24-172 (197)
367 cd03270 ABC_UvrA_I The excisio 99.6 2.2E-15 4.7E-20 129.7 12.4 72 60-136 118-195 (226)
368 TIGR01271 CFTR_protein cystic 99.6 1.3E-15 2.8E-20 160.9 13.2 128 4-136 1247-1408(1490)
369 PLN03232 ABC transporter C fam 99.6 1.3E-15 2.9E-20 160.8 13.3 131 3-136 644-796 (1495)
370 KOG0062 ATPase component of AB 99.6 9.1E-16 2E-20 142.6 8.8 129 5-147 109-261 (582)
371 TIGR00957 MRP_assoc_pro multi 99.6 1.8E-15 3.9E-20 160.1 12.1 130 3-136 665-818 (1522)
372 PTZ00243 ABC transporter; Prov 99.6 2E-15 4.4E-20 159.8 11.7 128 3-136 687-838 (1560)
373 COG4107 PhnK ABC-type phosphon 99.6 9.3E-15 2E-19 119.9 12.2 130 3-136 33-208 (258)
374 cd03240 ABC_Rad50 The catalyti 99.6 7.7E-15 1.7E-19 124.5 12.2 122 4-136 24-179 (204)
375 COG1245 Predicted ATPase, RNas 99.6 2.7E-15 5.8E-20 138.0 10.0 132 3-142 368-517 (591)
376 cd03279 ABC_sbcCD SbcCD and ot 99.6 4.3E-15 9.3E-20 126.6 9.2 129 4-136 30-189 (213)
377 cd03275 ABC_SMC1_euk Eukaryoti 99.6 4.3E-15 9.4E-20 129.4 9.0 132 4-136 24-215 (247)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.6 1E-15 2.2E-20 130.6 4.4 73 60-136 109-186 (212)
379 KOG0927 Predicted transporter 99.6 5.1E-15 1.1E-19 138.4 8.8 126 4-136 418-562 (614)
380 cd03271 ABC_UvrA_II The excisi 99.6 2.6E-14 5.7E-19 125.5 12.0 73 59-136 149-228 (261)
381 COG4172 ABC-type uncharacteriz 99.6 4.5E-14 9.8E-19 128.5 12.8 156 3-181 37-240 (534)
382 KOG0065 Pleiotropic drug resis 99.5 3.4E-15 7.3E-20 151.2 5.5 136 3-141 818-992 (1391)
383 COG4138 BtuD ABC-type cobalami 99.5 1.9E-14 4.1E-19 118.1 7.9 135 3-145 26-193 (248)
384 KOG0056 Heavy metal exporter H 99.5 4.9E-14 1.1E-18 130.8 11.4 135 3-144 565-738 (790)
385 COG1245 Predicted ATPase, RNas 99.5 4.6E-14 1E-18 130.0 11.1 126 3-136 101-269 (591)
386 cd03283 ABC_MutS-like MutS-lik 99.5 4.5E-14 9.9E-19 119.4 8.2 114 4-136 27-144 (199)
387 cd03280 ABC_MutS2 MutS2 homolo 99.5 8.6E-14 1.9E-18 117.5 7.6 106 4-136 30-147 (200)
388 COG5265 ATM1 ABC-type transpor 99.5 1.9E-13 4.2E-18 124.8 10.0 135 3-140 290-459 (497)
389 KOG0054 Multidrug resistance-a 99.5 3.9E-13 8.4E-18 138.6 12.1 131 3-136 548-699 (1381)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.4 1.2E-12 2.6E-17 110.5 12.7 117 4-128 23-161 (198)
391 COG4178 ABC-type uncharacteriz 99.4 7.4E-13 1.6E-17 126.9 12.4 128 5-136 422-570 (604)
392 KOG0054 Multidrug resistance-a 99.4 1.7E-13 3.7E-18 141.1 8.4 129 4-136 1168-1330(1381)
393 COG1129 MglA ABC-type sugar tr 99.4 1.2E-12 2.6E-17 123.2 11.5 142 3-152 286-469 (500)
394 KOG0066 eIF2-interacting prote 99.4 9.7E-13 2.1E-17 121.0 10.0 126 2-136 613-757 (807)
395 smart00534 MUTSac ATPase domai 99.4 3.8E-13 8.2E-18 112.3 5.2 114 5-136 2-118 (185)
396 KOG0927 Predicted transporter 99.4 3.1E-12 6.8E-17 119.9 11.7 117 5-125 104-266 (614)
397 cd03243 ABC_MutS_homologs The 99.4 6.9E-13 1.5E-17 112.1 5.8 113 4-136 31-147 (202)
398 KOG2355 Predicted ABC-type tra 99.3 1.6E-11 3.6E-16 103.2 9.9 134 5-141 43-210 (291)
399 KOG0062 ATPase component of AB 99.3 1.3E-11 2.8E-16 115.3 9.8 121 5-136 393-535 (582)
400 cd03227 ABC_Class2 ABC-type Cl 99.3 1.5E-11 3.2E-16 100.5 9.0 109 4-136 23-137 (162)
401 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.2E-11 2.6E-16 105.1 7.5 114 4-136 31-147 (204)
402 COG4170 SapD ABC-type antimicr 99.3 1.8E-11 3.9E-16 103.4 7.8 140 3-152 34-227 (330)
403 cd03239 ABC_SMC_head The struc 99.2 3.8E-11 8.1E-16 99.8 9.7 50 86-136 102-154 (178)
404 PRK00635 excinuclease ABC subu 99.2 8.2E-11 1.8E-15 124.4 13.7 71 61-136 791-868 (1809)
405 cd03281 ABC_MSH5_euk MutS5 hom 99.2 3.4E-11 7.3E-16 102.9 8.8 107 3-129 30-140 (213)
406 cd03277 ABC_SMC5_euk Eukaryoti 99.2 2.5E-11 5.3E-16 103.7 6.8 40 94-136 146-188 (213)
407 PRK00349 uvrA excinuclease ABC 99.2 2E-10 4.3E-15 116.3 14.4 71 61-136 812-889 (943)
408 TIGR02858 spore_III_AA stage I 99.2 2E-10 4.4E-15 101.4 12.2 39 3-41 112-150 (270)
409 PTZ00132 GTP-binding nuclear p 99.2 7.5E-11 1.6E-15 100.1 8.7 39 87-128 161-205 (215)
410 COG2401 ABC-type ATPase fused 99.2 2.3E-10 5.1E-15 104.8 11.1 132 2-136 409-564 (593)
411 TIGR00630 uvra excinuclease AB 99.2 3.8E-10 8.1E-15 114.1 13.5 73 61-136 810-887 (924)
412 cd03285 ABC_MSH2_euk MutS2 hom 99.1 1.4E-10 3.1E-15 99.6 8.4 110 4-136 32-149 (222)
413 KOG0060 Long-chain acyl-CoA tr 99.1 3.1E-10 6.7E-15 107.4 10.8 127 4-136 463-623 (659)
414 cd03284 ABC_MutS1 MutS1 homolo 99.1 3E-10 6.5E-15 97.2 9.0 108 4-136 32-149 (216)
415 KOG0066 eIF2-interacting prote 99.1 2.3E-10 5.1E-15 105.5 7.5 132 5-144 293-472 (807)
416 TIGR01069 mutS2 MutS2 family p 99.1 3.2E-10 7E-15 113.1 8.1 116 3-136 323-441 (771)
417 cd03287 ABC_MSH3_euk MutS3 hom 99.1 6.4E-10 1.4E-14 95.6 8.8 115 4-136 33-150 (222)
418 PF02463 SMC_N: RecF/RecN/SMC 99.0 3.6E-09 7.7E-14 90.1 10.8 68 59-136 123-195 (220)
419 KOG0063 RNAse L inhibitor, ABC 99.0 1.6E-09 3.4E-14 99.7 8.4 126 3-133 368-510 (592)
420 cd01120 RecA-like_NTPases RecA 98.9 7E-09 1.5E-13 82.7 9.0 120 5-137 2-134 (165)
421 PRK08533 flagellar accessory p 98.9 3.4E-09 7.4E-14 91.6 7.4 40 98-138 117-161 (230)
422 cd03241 ABC_RecN RecN ATPase i 98.9 4.3E-09 9.2E-14 93.2 6.7 54 81-136 171-229 (276)
423 KOG0064 Peroxisomal long-chain 98.9 8.1E-09 1.7E-13 97.2 8.6 123 4-136 510-665 (728)
424 COG3845 ABC-type uncharacteriz 98.9 2.1E-08 4.6E-13 93.6 11.3 130 3-136 285-459 (501)
425 COG3910 Predicted ATPase [Gene 98.8 5.4E-08 1.2E-12 81.0 11.4 124 4-136 39-184 (233)
426 PRK10416 signal recognition pa 98.8 1.2E-07 2.6E-12 85.7 14.8 39 2-40 114-152 (318)
427 cd01131 PilT Pilus retraction 98.8 7E-08 1.5E-12 81.4 12.1 102 4-136 3-105 (198)
428 COG1100 GTPase SAR1 and relate 98.8 1.5E-09 3.2E-14 91.8 1.3 122 3-126 6-137 (219)
429 PRK13695 putative NTPase; Prov 98.8 1.2E-08 2.6E-13 84.0 5.8 122 4-136 2-132 (174)
430 KOG0065 Pleiotropic drug resis 98.7 2.3E-08 5.1E-13 102.4 7.8 128 4-134 143-315 (1391)
431 PRK00409 recombination and DNA 98.7 4.2E-08 9.1E-13 98.3 9.4 112 4-136 329-446 (782)
432 PRK00635 excinuclease ABC subu 98.7 1.3E-07 2.7E-12 100.8 13.3 72 61-136 1681-1758(1809)
433 COG0178 UvrA Excinuclease ATPa 98.7 1.7E-07 3.7E-12 92.2 13.2 60 80-142 822-888 (935)
434 cd03286 ABC_MSH6_euk MutS6 hom 98.7 9.2E-08 2E-12 82.1 9.4 114 4-136 32-149 (218)
435 cd01876 YihA_EngB The YihA (En 98.7 2.1E-06 4.5E-11 68.2 16.6 20 5-24 2-21 (170)
436 cd01124 KaiC KaiC is a circadi 98.7 1.3E-07 2.9E-12 77.9 9.9 38 98-136 95-136 (187)
437 TIGR02788 VirB11 P-type DNA tr 98.7 1.4E-07 3E-12 84.9 10.2 100 3-132 145-244 (308)
438 cd04163 Era Era subfamily. Er 98.7 2.7E-06 5.8E-11 67.3 16.2 23 3-25 4-26 (168)
439 PRK00089 era GTPase Era; Revie 98.7 1.3E-06 2.8E-11 77.7 15.8 22 4-25 7-28 (292)
440 cd00880 Era_like Era (E. coli 98.6 5.3E-07 1.1E-11 70.4 11.5 77 98-181 44-120 (163)
441 cd01898 Obg Obg subfamily. Th 98.6 9.9E-07 2.1E-11 71.1 13.4 21 5-25 3-23 (170)
442 smart00382 AAA ATPases associa 98.6 3.2E-07 6.9E-12 70.2 10.0 34 3-36 3-36 (148)
443 PRK14974 cell division protein 98.6 2.8E-06 6E-11 77.4 16.0 39 2-40 140-178 (336)
444 TIGR00554 panK_bact pantothena 98.6 4.2E-08 9E-13 87.5 4.0 39 2-40 62-102 (290)
445 cd03242 ABC_RecF RecF is a rec 98.6 1.1E-07 2.4E-12 83.9 6.7 45 79-126 182-238 (270)
446 cd03115 SRP The signal recogni 98.6 1.2E-06 2.5E-11 71.9 12.1 38 3-40 1-38 (173)
447 KOG0063 RNAse L inhibitor, ABC 98.6 1.7E-07 3.6E-12 86.6 7.5 131 3-139 101-273 (592)
448 cd01881 Obg_like The Obg-like 98.6 5.2E-07 1.1E-11 73.0 9.7 19 7-25 1-19 (176)
449 TIGR01420 pilT_fam pilus retra 98.6 8.7E-07 1.9E-11 80.9 12.1 102 4-136 124-226 (343)
450 PRK00454 engB GTP-binding prot 98.6 9.2E-06 2E-10 67.2 17.3 22 3-24 25-46 (196)
451 cd01888 eIF2_gamma eIF2-gamma 98.5 5.1E-06 1.1E-10 70.1 15.3 23 4-26 2-24 (203)
452 PF00448 SRP54: SRP54-type pro 98.5 6.3E-07 1.4E-11 75.6 9.6 155 2-182 1-157 (196)
453 PRK14723 flhF flagellar biosyn 98.5 1.9E-06 4.2E-11 85.5 14.2 38 3-40 186-225 (767)
454 PRK09270 nucleoside triphospha 98.5 1.1E-07 2.3E-12 82.0 3.8 38 2-39 33-71 (229)
455 TIGR00436 era GTP-binding prot 98.5 6E-06 1.3E-10 72.8 15.0 22 4-25 2-23 (270)
456 cd04104 p47_IIGP_like p47 (47- 98.5 1.4E-06 3E-11 73.3 10.2 34 2-35 1-34 (197)
457 TIGR00750 lao LAO/AO transport 98.5 1.5E-06 3.2E-11 78.0 11.1 41 2-42 34-74 (300)
458 smart00053 DYNc Dynamin, GTPas 98.5 7.1E-06 1.5E-10 71.4 14.9 31 4-34 28-60 (240)
459 PRK07721 fliI flagellum-specif 98.5 2.1E-06 4.6E-11 80.8 12.1 38 3-40 159-196 (438)
460 cd04160 Arfrp1 Arfrp1 subfamil 98.4 2.9E-06 6.3E-11 68.2 11.1 23 5-27 2-24 (167)
461 cd04139 RalA_RalB RalA/RalB su 98.4 1.4E-06 3.1E-11 69.4 9.2 23 3-25 1-23 (164)
462 cd03112 CobW_like The function 98.4 1.5E-06 3.1E-11 70.8 9.2 24 4-27 2-25 (158)
463 PRK14722 flhF flagellar biosyn 98.4 2.6E-06 5.7E-11 78.5 11.8 91 3-113 138-232 (374)
464 cd01130 VirB11-like_ATPase Typ 98.4 2.7E-07 5.9E-12 76.9 4.7 35 3-37 26-60 (186)
465 PF13304 AAA_21: AAA domain; P 98.4 6.7E-07 1.5E-11 75.0 7.1 54 82-136 238-295 (303)
466 cd01895 EngA2 EngA2 subfamily. 98.4 1.1E-05 2.3E-10 64.6 13.7 23 3-25 3-25 (174)
467 PF00009 GTP_EFTU: Elongation 98.4 7.3E-07 1.6E-11 74.1 6.7 112 98-244 69-184 (188)
468 PRK06067 flagellar accessory p 98.4 1.3E-06 2.8E-11 75.3 8.4 35 3-38 26-61 (234)
469 TIGR00231 small_GTP small GTP- 98.4 1.8E-05 3.8E-10 61.6 14.1 24 3-26 2-25 (161)
470 cd01125 repA Hexameric Replica 98.4 3.5E-06 7.7E-11 72.9 10.4 119 3-137 2-156 (239)
471 PRK09866 hypothetical protein; 98.4 6E-05 1.3E-09 73.5 19.6 24 3-26 70-93 (741)
472 PF02421 FeoB_N: Ferrous iron 98.4 3.8E-06 8.3E-11 68.4 9.9 118 4-181 2-121 (156)
473 cd01128 rho_factor Transcripti 98.4 1.9E-06 4.2E-11 75.3 8.7 28 4-31 18-45 (249)
474 cd00881 GTP_translation_factor 98.4 2E-05 4.3E-10 64.3 14.3 24 5-28 2-25 (189)
475 cd02025 PanK Pantothenate kina 98.4 2.5E-07 5.4E-12 79.4 3.1 36 4-39 1-38 (220)
476 cd00009 AAA The AAA+ (ATPases 98.4 2E-06 4.4E-11 66.4 7.9 33 4-36 21-53 (151)
477 cd00157 Rho Rho (Ras homology) 98.3 3.6E-06 7.7E-11 67.8 9.4 23 4-26 2-24 (171)
478 PF01926 MMR_HSR1: 50S ribosom 98.3 8.7E-07 1.9E-11 67.7 5.5 21 5-25 2-22 (116)
479 cd00882 Ras_like_GTPase Ras-li 98.3 3.9E-06 8.3E-11 64.4 9.1 75 98-181 44-118 (157)
480 PRK11889 flhF flagellar biosyn 98.3 4E-06 8.8E-11 77.6 10.5 38 3-40 242-279 (436)
481 cd00820 PEPCK_HprK Phosphoenol 98.3 5.3E-07 1.2E-11 68.8 4.0 32 3-40 16-47 (107)
482 cd03114 ArgK-like The function 98.3 1.2E-06 2.7E-11 70.6 6.0 38 5-42 2-39 (148)
483 cd04164 trmE TrmE (MnmE, ThdF, 98.3 5.3E-06 1.2E-10 65.4 9.5 23 3-25 2-24 (157)
484 TIGR03015 pepcterm_ATPase puta 98.3 1.8E-05 3.8E-10 69.1 13.5 96 4-116 45-141 (269)
485 cd01884 EF_Tu EF-Tu subfamily. 98.3 3E-05 6.5E-10 65.3 14.2 24 3-26 3-26 (195)
486 TIGR00064 ftsY signal recognit 98.3 8.9E-06 1.9E-10 72.1 11.4 108 3-125 73-182 (272)
487 cd04165 GTPBP1_like GTPBP1-lik 98.3 4.5E-05 9.8E-10 65.6 15.1 29 5-33 2-31 (224)
488 TIGR00235 udk uridine kinase. 98.3 7.1E-07 1.5E-11 75.6 3.7 35 3-39 7-41 (207)
489 cd02023 UMPK Uridine monophosp 98.3 7E-07 1.5E-11 74.9 3.6 35 4-40 1-35 (198)
490 TIGR03238 dnd_assoc_3 dnd syst 98.3 8.1E-07 1.8E-11 83.7 4.3 37 3-41 33-70 (504)
491 cd01862 Rab7 Rab7 subfamily. 98.2 1.6E-05 3.4E-10 64.1 11.0 22 4-25 2-23 (172)
492 TIGR01425 SRP54_euk signal rec 98.2 6.8E-05 1.5E-09 70.3 16.5 39 2-40 100-138 (429)
493 cd01878 HflX HflX subfamily. 98.2 8E-06 1.7E-10 68.4 9.4 23 3-25 42-64 (204)
494 PRK06995 flhF flagellar biosyn 98.2 1.6E-05 3.4E-10 75.7 12.3 87 3-109 257-345 (484)
495 PRK05703 flhF flagellar biosyn 98.2 3.6E-05 7.8E-10 72.3 14.6 101 3-124 222-326 (424)
496 TIGR03499 FlhF flagellar biosy 98.2 4.6E-06 9.9E-11 74.2 8.2 38 3-40 195-234 (282)
497 COG1618 Predicted nucleotide k 98.2 2.8E-06 6.1E-11 69.1 6.1 122 1-136 4-136 (179)
498 PRK12298 obgE GTPase CgtA; Rev 98.2 6.4E-05 1.4E-09 69.9 15.9 79 100-181 208-291 (390)
499 cd01879 FeoB Ferrous iron tran 98.2 1.3E-05 2.9E-10 63.5 9.8 19 7-25 1-19 (158)
500 cd01864 Rab19 Rab19 subfamily. 98.2 7.1E-05 1.5E-09 60.2 13.9 22 3-24 4-25 (165)
No 1
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1e-61 Score=408.38 Aligned_cols=245 Identities=46% Similarity=0.811 Sum_probs=228.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
|+|+++||||+||||||+|..++.++...++++.++|+||+++.++|+++++|++.++++++|+++++||||+.++|+++
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~ 80 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEY 80 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (248)
+..+. .|+...+... ...|+|||+|||+|+++++...+++++.|.+.+.++++||++|+|+|++|++|+|..++++.+
T Consensus 81 l~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t 158 (290)
T KOG1533|consen 81 LEANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT 158 (290)
T ss_pred HHhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH
Confidence 99999 9999888774 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCeeeeecccccccchhhh----hhhcc-cCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCCeeeEEeecccc
Q 025795 161 MVQLELPHVNILSKMDLVTNKKEI----EDYLN-PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE 234 (248)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~~~l----~~~~~-~~~~~l~~~~~~-~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~ 234 (248)
|+.+++|||||+||+|++++++.+ +.|.+ .|..+|.+.++. +..+||+|||++||++|+||+||+|.||+++|+
T Consensus 159 Ml~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nk 238 (290)
T KOG1533|consen 159 MLHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNK 238 (290)
T ss_pred HHhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCH
Confidence 999999999999999999987543 33333 467777776654 445799999999999999999999999999999
Q ss_pred H--HHHHHHHhhcCC
Q 025795 235 S--RRLLSQIMKMSY 247 (248)
Q Consensus 235 ~--~~~~~~id~~~~ 247 (248)
| .+++++||+||-
T Consensus 239 eSml~l~~~IDkAnG 253 (290)
T KOG1533|consen 239 ESMLRLQQTIDKANG 253 (290)
T ss_pred HHHHHHHHHHHhccC
Confidence 9 999999999983
No 2
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=2.9e-59 Score=388.14 Aligned_cols=242 Identities=65% Similarity=1.162 Sum_probs=227.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
|+|.+.|+||+||||||+|+.+..+.+..++++.++|+|||++.+.|+..++|||.|+++++|+.+.+||||++++|+++
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEy 81 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEY 81 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (248)
+.+++ .|+...+..+ +.+|+|||+|||+++++|..+++++++.++++++++++||++|++++.|..+|+|+++.++++
T Consensus 82 l~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 99999 9999988765 889999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHhhCCCeeeeecccccccc--hhhhhhhcccCHHHHHH--HhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccccH-
Q 025795 161 MVQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES- 235 (248)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~--~~~l~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~- 235 (248)
|+++++|||||+||+||++. ++++++|+++|...+.+ +.+. ..+||++|++.|+++++|||+|+|+|++.+|++
T Consensus 160 Mi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeS 238 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEES 238 (273)
T ss_pred HHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHH
Confidence 99999999999999999985 34899999998776654 3332 336999999999999999999999999999999
Q ss_pred -HHHHHHHhhc
Q 025795 236 -RRLLSQIMKM 245 (248)
Q Consensus 236 -~~~~~~id~~ 245 (248)
..+|++||.|
T Consensus 239 i~~iL~~ID~a 249 (273)
T KOG1534|consen 239 INIILSYIDDA 249 (273)
T ss_pred HHHHHHHHHHH
Confidence 9999999986
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=9.1e-51 Score=351.95 Aligned_cols=231 Identities=51% Similarity=0.874 Sum_probs=182.3
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhhHH
Q 025795 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 86 (248)
Q Consensus 7 iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~ 86 (248)
|+||+||||||||+.+..+++..++++.++|+||+++.++|.+++||||.++++++|++++|||||+..+|++++..++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCC
Q 025795 87 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 166 (248)
Q Consensus 87 ~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~ 166 (248)
.|+...+... +++|+|+|+|||++.++++..++.+++.|.+ +.++++||++|++.+.+|.+|++++++++++|+++++
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 9998888665 7799999999999999999999889999976 7889999999999999999999999999999999999
Q ss_pred Ceeeeecccccccch--hhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCe-eeEEeeccccH--HHHHHH
Q 025795 167 PHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKES--RRLLSQ 241 (248)
Q Consensus 167 p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~-~f~~l~~~~~~--~~~~~~ 241 (248)
||++|+||+|+++++ ..++++. +.+.+...++.. +++++++|++++++|+++ +|+|+|++|++ .+|+++
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~~--d~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~ 231 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWFE--DPDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAA 231 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHHH--SHHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHH
T ss_pred CEEEeeeccCcccchhHHHHHHhc--ChHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHH
Confidence 999999999999843 2334443 445554444432 899999999999999998 99999999999 999999
Q ss_pred HhhcC
Q 025795 242 IMKMS 246 (248)
Q Consensus 242 id~~~ 246 (248)
||+|+
T Consensus 232 id~a~ 236 (238)
T PF03029_consen 232 IDKAN 236 (238)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99985
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-35 Score=255.54 Aligned_cols=239 Identities=27% Similarity=0.455 Sum_probs=207.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
+.++.++|.+|||||||++-|.+|+...+-..+++|+||+..++||+.++||||.+.+.++|++++|||||+...|++.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLF 98 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHH
Confidence 46889999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred hhhHH--HHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHH
Q 025795 82 EDNLD--DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (248)
Q Consensus 82 ~~~~~--~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (248)
..++. ..+.+.... +-+++|+|.|||++.+++.....-+...|+. -..++++|.+|+.....|..|+|+++.+||
T Consensus 99 ~tk~dqv~~~iek~~~--~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 99 ATKFDQVIELIEKRAE--EFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHhhc--ccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 98884 234444444 5679999999999999999998444555654 456778999999999999999999999999
Q ss_pred HHHhhCCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccccH--H
Q 025795 160 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES--R 236 (248)
Q Consensus 160 ~~~~~~~p~~~vlsk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~--~ 236 (248)
.+.+..+|.+.||||+|+....+.++++ . |.+.+.+++++........|.+++...+++|-- +.+.-++.-.++ .
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm-~-DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d 253 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWM-T-DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD 253 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHH-H-HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence 9999999999999999998887444433 2 677888888865556789999999999999865 888888888877 8
Q ss_pred HHHHHHhhc
Q 025795 237 RLLSQIMKM 245 (248)
Q Consensus 237 ~~~~~id~~ 245 (248)
.++..||.+
T Consensus 254 df~~av~~~ 262 (366)
T KOG1532|consen 254 DFFTAVDES 262 (366)
T ss_pred HHHHHHHHH
Confidence 888888864
No 5
>PRK13768 GTPase; Provisional
Probab=99.97 E-value=3.8e-29 Score=218.73 Aligned_cols=243 Identities=31% Similarity=0.560 Sum_probs=208.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
|++++++.||.||||||++..++..+...+.++.+.+.||+....+|.++.++++.++.+++|...+++|++..+++++.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDL 80 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHH
Confidence 88999999999999999999999998877778999999999998999999999999999999999999999999999887
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (248)
...+. .|+...+... +++++++|.|++.+++.++...+.+.+.+.+.+ +-++++++|+....++.++.....+..+.
T Consensus 81 ~~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 81 LLTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 77776 6776666654 679999999999999998888877888776544 66788899999889999999988888899
Q ss_pred HHhhCCCeeeeecccccccch--hhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCC-eeeEEeeccccH--
Q 025795 161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES-- 235 (248)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~-- 235 (248)
+.+.+.|++.|+||+|++++. ..+.++++ +++.+.++++...+.+ ++|++++++.+++++. .++.|+|+.+++
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl 235 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEEELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF 235 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCchhHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence 999999999999999999764 12344455 6677777776555445 9999999999999997 599999999988
Q ss_pred HHHHHHHhhcCCC
Q 025795 236 RRLLSQIMKMSYS 248 (248)
Q Consensus 236 ~~~~~~id~~~~~ 248 (248)
..++..|.+.-++
T Consensus 236 ~~L~~~I~~~l~~ 248 (253)
T PRK13768 236 DELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999887653
No 6
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=210.41 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~--------- 58 (248)
-+++|+||+|||||||+|||+++.+|++|+|.++|.++.. |++..+|.+|+-|++.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~ 108 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL 108 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence 4789999999999999999999999999999999965531 5666688889999886
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+.++++++||.+..... + ..++++ +|++|||+|+. +|++++|||||+ |||+...++. +.++.|+
T Consensus 109 ~k~eA~~~A~~lL~~VGL~~ka~~y-P-~qLSGGQqQRVAIARALaM--~P~vmLFDEPTSALDPElv~EVL-~vm~~LA 183 (240)
T COG1126 109 SKAEAREKALELLEKVGLADKADAY-P-AQLSGGQQQRVAIARALAM--DPKVMLFDEPTSALDPELVGEVL-DVMKDLA 183 (240)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhhC-c-cccCcHHHHHHHHHHHHcC--CCCEEeecCCcccCCHHHHHHHH-HHHHHHH
Confidence 56788899998774333 3 345554 45999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEecccccccChHHHHHHH
Q 025795 128 SRNFNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
++|.|.++| +|.+.-..++.+.+
T Consensus 184 ~eGmTMivV----THEM~FAr~Vadrv 206 (240)
T COG1126 184 EEGMTMIIV----THEMGFAREVADRV 206 (240)
T ss_pred HcCCeEEEE----echhHHHHHhhheE
Confidence 999998877 35554444444433
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=3.3e-29 Score=217.73 Aligned_cols=162 Identities=21% Similarity=0.347 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+|+|+|+++|.+|+|.++|.+... +.+.| +..++|+|.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 4789999999999999999999999999999999987642 12222 33455666553
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++++++.+|+.....+. .+.++++. ++|||++|++ +|+++++||||+ ||+.++.+++ +++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~LDi~~Q~evl-~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQ--ETPILLLDEPTSHLDIAHQIEVL-ELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhc--CCCEEEeCCCccccCHHHHHHHH-HHHHH
Confidence 77789999998877666 45676664 4999999999 999999999999 9999999999 99999
Q ss_pred HHh-CCCeEEEEEecccccccChHHHHHHHHHHH-HHHHhhCCCeeeeecc
Q 025795 126 LKS-RNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSK 174 (248)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~-~~~~~~~~p~~~vlsk 174 (248)
+++ +|.++++| .|...-...|++.+++.. +.++..|.|. .|++.
T Consensus 184 l~~~~~~tvv~v----lHDlN~A~ryad~~i~lk~G~i~a~G~p~-evlT~ 229 (258)
T COG1120 184 LNREKGLTVVMV----LHDLNLAARYADHLILLKDGKIVAQGTPE-EVLTE 229 (258)
T ss_pred HHHhcCCEEEEE----ecCHHHHHHhCCEEEEEECCeEEeecCcc-hhcCH
Confidence 984 58888777 245555567776555544 4555666665 35543
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.9e-28 Score=210.19 Aligned_cols=157 Identities=16% Similarity=0.282 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC---------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY---------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y---------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+|++.|+++|.+|+|.+.|..... ..++| ...++|+|.+.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 4689999999999999999999999999999998875422 22444 23467888775
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++++|+.....+. ...+++++ |+.|||||+. +|++++||||++ +|+.++..+. ++++++
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~gvD~~~~~~i~-~lL~~l 185 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQ--NPDLLLLDEPFTGVDVAGQKEIY-DLLKEL 185 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhcc--CCCEEEecCCcccCCHHHHHHHH-HHHHHH
Confidence 78899999998776555 45677764 5899999999 999999999999 9999999999 999999
Q ss_pred HhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCe
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (248)
+++|++|++|+ |.+.....+++.+++.....+..+.|.
T Consensus 186 ~~eg~tIl~vt----HDL~~v~~~~D~vi~Ln~~~~~~G~~~ 223 (254)
T COG1121 186 RQEGKTVLMVT----HDLGLVMAYFDRVICLNRHLIASGPPE 223 (254)
T ss_pred HHCCCEEEEEe----CCcHHhHhhCCEEEEEcCeeEeccChh
Confidence 98899998874 666666777666655555555555444
No 9
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=3.1e-26 Score=204.29 Aligned_cols=143 Identities=16% Similarity=0.284 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~----------- 58 (248)
-++|++||||||||||+|+|+|+++|++|+|.+.|.++.. +...+++.+|++|++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~ 111 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE 111 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence 4789999999999999999999999999999999988743 2333466789998875
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.++|.+..... ...++.++ ++.||.+|.. +|+++|+||||+ ||+.++..++ +++++++++|
T Consensus 112 ~~~~~~~~~l~~~~L~~~~~~~--~~~lS~G~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~-~~l~~l~~~g 186 (293)
T COG1131 112 EAEERIEELLELFGLEDKANKK--VRTLSGGMKQRLSIALALLH--DPELLILDEPTSGLDPESRREIW-ELLRELAKEG 186 (293)
T ss_pred HHHHHHHHHHHHcCCchhhCcc--hhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 56789999999843222 34566655 4899999999 999999999999 9999999999 9999998876
Q ss_pred -CeEEEEEecccccccChHHHHHHH
Q 025795 131 -FNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 131 -~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
.+|+ +.+|.+.+...+|+.+
T Consensus 187 ~~tvl----issH~l~e~~~~~d~v 207 (293)
T COG1131 187 GVTIL----LSTHILEEAEELCDRV 207 (293)
T ss_pred CcEEE----EeCCcHHHHHHhCCEE
Confidence 5664 4578888888776644
No 10
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3e-26 Score=190.51 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=117.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~----------- 58 (248)
-++||+|||||||||++|+|++++.|++|.|+++|.|... ...+++..+|++|++.
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~ 108 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK 108 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhh
Confidence 4789999999999999999999999999999999988643 2233455789999885
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++++++.....+.+ -.++.++ ++.||||+++ +|++++||||++ ||..+++.+. ++++++++.|
T Consensus 109 ~~kari~~l~k~l~l~~~~~rRv--~~~S~G~kqkV~iARAlvh--~P~i~vlDEP~sGLDi~~~r~~~-dfi~q~k~eg 183 (245)
T COG4555 109 EIKARIAELSKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVH--DPSILVLDEPTSGLDIRTRRKFH-DFIKQLKNEG 183 (245)
T ss_pred HHHHHHHHHHHHhChHHHHHHHH--hhhchhhHHHHHHHHHHhc--CCCeEEEcCCCCCccHHHHHHHH-HHHHHhhcCC
Confidence 678888999887654443 2344544 3999999999 999999999999 9999999988 9999998778
Q ss_pred CeEEEEEecccccccChHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
..++ +++|.+.+.+..|+.+
T Consensus 184 r~vi----FSSH~m~EvealCDrv 203 (245)
T COG4555 184 RAVI----FSSHIMQEVEALCDRV 203 (245)
T ss_pred cEEE----EecccHHHHHHhhheE
Confidence 8775 5689999999888743
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.5e-26 Score=193.79 Aligned_cols=137 Identities=14% Similarity=0.166 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCcccChhhhhh---------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y~~~~~i~e~i~--------------- 58 (248)
-+++|+||+|||||||+|+++|+.+|++|+|.+.|..+.. |+....|..||++|+.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~ 109 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE 109 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence 4689999999999999999999999999999999976421 3333456678888874
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (248)
++++++.+||........ ..+++++ +++|||+++. +|++|++|||++ ||..++..+...+++-+.+.++|++
T Consensus 110 ~a~~~L~~VgL~~~~~~~P--~qLSGGMrQRVaiARAL~~--~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 110 RAKELLELVGLAGFEDKYP--HQLSGGMRQRVAIARALAT--RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred HHHHHHHHcCCcchhhcCc--cccChHHHHHHHHHHHHhc--CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 778899999988765543 3577765 4999999999 999999999998 9999999988555555566788888
Q ss_pred EEEecccccccCh
Q 025795 135 AVYLLDSQFITDV 147 (248)
Q Consensus 135 ~v~l~d~~~~~d~ 147 (248)
+| +|.+.+.
T Consensus 186 lV----THdi~EA 194 (248)
T COG1116 186 LV----THDVDEA 194 (248)
T ss_pred EE----eCCHHHH
Confidence 77 4555443
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.8e-25 Score=190.84 Aligned_cols=130 Identities=23% Similarity=0.237 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------ 58 (248)
-+++|+||+|||||||++++.|+.+|++|.|.+.|.|... |.+..-|++|+.|++.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 3689999999999999999999999999999999977642 3444467889999987
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++++++.+|+++.....++ ..++++ +|++||||++. +|++++.||||. ||..+.+.++ +++++
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-~eLSGGqqQRVAIARAL~~--~P~iilADEPTgnLD~~t~~~V~-~ll~~ 187 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKP-SELSGGQQQRVAIARALIN--NPKIILADEPTGNLDSKTAKEVL-ELLRE 187 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCc-hhcCHHHHHHHHHHHHHhc--CCCeEEeeCccccCChHHHHHHH-HHHHH
Confidence 4566777899866553333 345554 45999999999 999999999998 9999999999 99999
Q ss_pred HHhC-CCeEEEE
Q 025795 126 LKSR-NFNVCAV 136 (248)
Q Consensus 126 l~~~-~~~ii~v 136 (248)
+.++ |.++++|
T Consensus 188 ~~~~~g~tii~V 199 (226)
T COG1136 188 LNKERGKTIIMV 199 (226)
T ss_pred HHHhcCCEEEEE
Confidence 9754 8888777
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=6.2e-25 Score=188.43 Aligned_cols=142 Identities=21% Similarity=0.262 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~---------- 58 (248)
-+.+++||+||||||++|+|.++++|++|+|.++|.+... +.++.+|.+||.++|.
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k 107 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK 107 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCH
Confidence 4678999999999999999999999999999999988754 4455578999999986
Q ss_pred ------HHHHHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 ------LEDVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 ------~~~~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++|.|+.+||.|. -...|+. .++++ +|+-++|||+. +|+++++|||++ |||.++..+. +.+.++++
T Consensus 108 ~~i~~r~~ELl~lvgL~p~~~~~RyP~-eLSGGQQQRVGv~RALAa--dP~ilLMDEPFgALDpI~R~~lQ-~e~~~lq~ 183 (309)
T COG1125 108 ERIKKRADELLDLVGLDPSEYADRYPH-ELSGGQQQRVGVARALAA--DPPILLMDEPFGALDPITRKQLQ-EEIKELQK 183 (309)
T ss_pred HHHHHHHHHHHHHhCCCHHHHhhcCch-hcCcchhhHHHHHHHHhc--CCCeEeecCCccccChhhHHHHH-HHHHHHHH
Confidence 7899999999984 4445553 45554 35899999999 999999999998 9999999988 77777765
Q ss_pred -CCCeEEEEEecccccccChHHHHH
Q 025795 129 -RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 129 -~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++|+++| +|.+.+..+..+
T Consensus 184 ~l~kTivfV----THDidEA~kLad 204 (309)
T COG1125 184 ELGKTIVFV----THDIDEALKLAD 204 (309)
T ss_pred HhCCEEEEE----ecCHHHHHhhhc
Confidence 58999877 466666655544
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.93 E-value=4.5e-25 Score=197.99 Aligned_cols=146 Identities=17% Similarity=0.201 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +...+++.++++|++.
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 113 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAA 113 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987632 2223345678888764
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++||||||+ ||+.+++.++ +++++++++|
T Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~--~P~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~g 188 (306)
T PRK13537 114 AARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVN--DPDVLVLDEPTTGLDPQARHLMW-ERLRSLLARG 188 (306)
T ss_pred HHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 34667788887543333 34566654 3899999999 999999999999 9999999999 9999997778
Q ss_pred CeEEEEEecccccccChHHHHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (248)
.+++++ +|.+.+...+|+.+++.
T Consensus 189 ~till~----sH~l~e~~~~~d~i~il 211 (306)
T PRK13537 189 KTILLT----THFMEEAERLCDRLCVI 211 (306)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEE
Confidence 888654 78888777777755443
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=196.53 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~------- 58 (248)
-++||+|++|+|||||+|++.++.+|++|+|.++|.|... +++......||.+++.
T Consensus 33 eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag 112 (339)
T COG1135 33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG 112 (339)
T ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence 4789999999999999999999999999999999977632 3333334567887775
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+||.+..... +. .++++ +++.|||||+. +|++|+.||||+ |||.+.+.++ ++++++
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk~~~y-P~-qLSGGQKQRVaIARALa~--~P~iLL~DEaTSALDP~TT~sIL-~LL~~I 187 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDKADRY-PA-QLSGGQKQRVAIARALAN--NPKILLCDEATSALDPETTQSIL-ELLKDI 187 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhccC-ch-hcCcchhhHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHHHHH
Confidence 78899999999665443 32 45554 45999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeec
Q 025795 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 173 (248)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vls 173 (248)
++ .|.|+++| +|.+.=..++|+.+.....+.+.-..+..+||+
T Consensus 188 n~~lglTIvlI----THEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 188 NRELGLTIVLI----THEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred HHHcCCEEEEE----echHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 85 59998877 466666677777665555555444445555553
No 16
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=7.9e-25 Score=186.43 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~------- 58 (248)
-+.+|+||+|||||||+|+|.|+++|++|+|.+.|.+... |.-..+.+++|+|++.
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence 4789999999999999999999999999999999988643 1122244789999886
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+..-++.+||.+..+..++. .++++++ ++||||++. +|+++++||||+ |||.+...+- ++|++
T Consensus 115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-ELSGGM~KRvaLARAial--dPell~~DEPtsGLDPI~a~~~~-~LI~~ 190 (263)
T COG1127 115 KLPESLIRELVLMKLELVGLRGAAADLYPS-ELSGGMRKRVALARAIAL--DPELLFLDEPTSGLDPISAGVID-ELIRE 190 (263)
T ss_pred cCCHHHHHHHHHHHHHhcCCChhhhhhCch-hhcchHHHHHHHHHHHhc--CCCEEEecCCCCCCCcchHHHHH-HHHHH
Confidence 44556778998886666653 5667764 999999999 999999999999 9999998888 99999
Q ss_pred HHh-CCCeEEEE
Q 025795 126 LKS-RNFNVCAV 136 (248)
Q Consensus 126 l~~-~~~~ii~v 136 (248)
+++ -|.|+++|
T Consensus 191 L~~~lg~T~i~V 202 (263)
T COG1127 191 LNDALGLTVIMV 202 (263)
T ss_pred HHHhhCCEEEEE
Confidence 986 48887766
No 17
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=3.1e-25 Score=189.26 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------C------CCC---CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------N------FDY---PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~--------~------~~y---~~~~~i~e~i~------- 58 (248)
-++||+|++|||||||+++++|+.+|+.|+|.++|...... . -|| .|..+|++.+.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~ 113 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG 113 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence 47899999999999999999999999999999999644321 1 122 45567776664
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+||.+.-...++.+ +++++ |++|||||.. +|++||+||||+ ||...+.+++ +++.++++
T Consensus 114 ~~~~~~~i~~~L~~VgL~~~~l~R~P~e-LSGGQ~QRiaIARAL~~--~PklLIlDEptSaLD~siQa~Il-nlL~~l~~ 189 (252)
T COG1124 114 LSKSQQRIAELLDQVGLPPSFLDRRPHE-LSGGQRQRIAIARALIP--EPKLLILDEPTSALDVSVQAQIL-NLLLELKK 189 (252)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHhcCchh-cChhHHHHHHHHHHhcc--CCCEEEecCchhhhcHHHHHHHH-HHHHHHHH
Confidence 688999999998876677654 66664 4999999999 999999999999 9999999999 99999975
Q ss_pred -CCCeEEEEEecccccccChHHHHHHHH
Q 025795 129 -RNFNVCAVYLLDSQFITDVTKFISGCM 155 (248)
Q Consensus 129 -~~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (248)
.+.+.++| +|.+.=...+|+.+.
T Consensus 190 ~~~lt~l~I----sHdl~~v~~~cdRi~ 213 (252)
T COG1124 190 ERGLTYLFI----SHDLALVEHMCDRIA 213 (252)
T ss_pred hcCceEEEE----eCcHHHHHHHhhhee
Confidence 47787766 566655566666443
No 18
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.92 E-value=1.2e-24 Score=194.76 Aligned_cols=144 Identities=17% Similarity=0.255 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..++| .+.+++++++.
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 99 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD 99 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999976521 12332 34567777664
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ +++++++++|
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 174 (302)
T TIGR01188 100 EAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIH--QPDVLFLDEPTTGLDPRTRRAIW-DYIRALKEEG 174 (302)
T ss_pred HHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 45678888887543332 34566654 4899999999 999999999999 9999999999 8999987678
Q ss_pred CeEEEEEecccccccChHHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGCM 155 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l 155 (248)
.+++++ +|...+...+|+.++
T Consensus 175 ~tvi~~----sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 175 VTILLT----THYMEEADKLCDRIA 195 (302)
T ss_pred CEEEEE----CCCHHHHHHhCCEEE
Confidence 887655 677766666665443
No 19
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.92 E-value=1.6e-24 Score=196.98 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++ +++.+++++++.
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 147 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR 147 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999987532 1222 234567777764
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++++++.+.|
T Consensus 148 ~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~--~P~lLiLDEPt~gLD~~~r~~l~-~~l~~l~~~g 222 (340)
T PRK13536 148 EIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 222 (340)
T ss_pred HHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 33567788887543333 34566654 3899999999 999999999999 9999999999 9999997778
Q ss_pred CeEEEEEecccccccChHHHHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGCMAS 157 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (248)
.+++++ +|.+.+...+|+.+++.
T Consensus 223 ~tilis----SH~l~e~~~~~d~i~il 245 (340)
T PRK13536 223 KTILLT----THFMEEAERLCDRLCVL 245 (340)
T ss_pred CEEEEE----CCCHHHHHHhCCEEEEE
Confidence 887654 78887777777755443
No 20
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.91 E-value=2.2e-24 Score=183.63 Aligned_cols=129 Identities=14% Similarity=0.218 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999876421 12333 23457776653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 184 (216)
T TIGR00960 110 VPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVH--KPPLLLADEPTGNLDPELSRDIM-RLFEEF 184 (216)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 35577888887543322 24466554 4899999999 999999999999 9999999999 888888
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
++.|.+++++
T Consensus 185 ~~~~~tii~v 194 (216)
T TIGR00960 185 NRRGTTVLVA 194 (216)
T ss_pred HHCCCEEEEE
Confidence 7667777665
No 21
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=2.8e-24 Score=177.30 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC--------------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY--------------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---~~~~y--------------~~~~~i~e~i~------- 58 (248)
-.+.++||+|||||||+|.|++..+|++|+|.++|.|... ..+|| -++.|+.|++.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G 108 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG 108 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence 4578999999999999999999999999999999998753 23332 34668888885
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+||.........--...++++++||||++. +|++||.||||. |||....+++ ++++++.+
T Consensus 109 ~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~--~P~vLlADEPTGNLDp~~s~~im-~lfeeinr 185 (223)
T COG2884 109 KPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN--QPAVLLADEPTGNLDPDLSWEIM-RLFEEINR 185 (223)
T ss_pred CCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc--CCCeEeecCCCCCCChHHHHHHH-HHHHHHhh
Confidence 7889999999876543332212223466999999999 999999999997 9999999999 99999998
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
.|.|+++.
T Consensus 186 ~GtTVl~A 193 (223)
T COG2884 186 LGTTVLMA 193 (223)
T ss_pred cCcEEEEE
Confidence 99998765
No 22
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=196.82 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++++||+||||||++|+|+|+.+|++|+|.++|.+... |+...+|.+||+++|.
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~ 111 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA 111 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHH
Confidence 3688999999999999999999999999999999987643 3334478899999974
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR 129 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~ 129 (248)
+.++++.+++++.+.+.. ..++++ ++++|||+|+. +|+++++|||.+ ||...+.++. .-++++. +.
T Consensus 112 ~i~~rv~e~L~lV~L~~~~~R~p--~qLSGGQqQRVALARAL~~--~P~vLLLDEPlSaLD~kLR~~mr-~Elk~lq~~~ 186 (352)
T COG3842 112 EIKARVEEALELVGLEGFADRKP--HQLSGGQQQRVALARALVP--EPKVLLLDEPLSALDAKLREQMR-KELKELQREL 186 (352)
T ss_pred HHHHHHHHHHHHcCchhhhhhCh--hhhChHHHHHHHHHHHhhc--CcchhhhcCcccchhHHHHHHHH-HHHHHHHHhc
Confidence 788899999999876664 345555 45999999999 999999999999 9999999988 5556655 46
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
|.|.++|
T Consensus 187 giT~i~V 193 (352)
T COG3842 187 GITFVYV 193 (352)
T ss_pred CCeEEEE
Confidence 8888777
No 23
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.91 E-value=8.9e-25 Score=198.73 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 111 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999976531 12333 33567777764
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 112 ~~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~--~P~iLLlDEPts~LD~~t~~~i~-~lL~~l 186 (343)
T TIGR02314 112 TPKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTQSIL-ELLKEI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 45778889997654333 24566654 4999999999 999999999999 9999999999 999998
Q ss_pred HhC-CCeEEEEEecccccccChHHHHHHHHH
Q 025795 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
.++ |.+++++ +|.+.....+|+.+++
T Consensus 187 ~~~~g~tiili----TH~~~~v~~~~d~v~v 213 (343)
T TIGR02314 187 NRRLGLTILLI----THEMDVVKRICDCVAV 213 (343)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEEEE
Confidence 764 8888766 5666666666654443
No 24
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.91 E-value=8.2e-25 Score=196.85 Aligned_cols=128 Identities=21% Similarity=0.194 Sum_probs=107.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh-------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------- 58 (248)
+++++||||||||||+|+|+|+.+|++|+|.++|.+... |+...+|.+||++++.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei 110 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI 110 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence 578999999999999999999999999999999976532 4445578899999986
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCC
Q 025795 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNF 131 (248)
Q Consensus 59 ---~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~ 131 (248)
++++.+.+++.+...+.. ..+++++ ++++|||++. +|++++||||.+ ||...+..+. .-++++.+ .|.
T Consensus 111 ~~rV~eva~~L~l~~lL~r~P--~~LSGGQrQRVAlaRAlVr--~P~v~L~DEPlSnLDa~lR~~mr-~ei~~lh~~l~~ 185 (338)
T COG3839 111 DKRVKEVAKLLGLEHLLNRKP--LQLSGGQRQRVALARALVR--KPKVFLLDEPLSNLDAKLRVLMR-SEIKKLHERLGT 185 (338)
T ss_pred HHHHHHHHHHcCChhHHhcCc--ccCChhhHHHHHHHHHHhc--CCCEEEecCchhHhhHHHHHHHH-HHHHHHHHhcCC
Confidence 778999999998766653 3466654 5999999999 999999999999 9999998877 66777765 477
Q ss_pred eEEEE
Q 025795 132 NVCAV 136 (248)
Q Consensus 132 ~ii~v 136 (248)
|++.|
T Consensus 186 T~IYV 190 (338)
T COG3839 186 TTIYV 190 (338)
T ss_pred cEEEE
Confidence 77766
No 25
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.9e-24 Score=181.78 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHH
Confidence 4689999999999999999999999999999999876521 22333 22456766653
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03259 107 IRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAR--EPSLLLLDEPLSALDAKLREELR-EELKELQRELG 181 (213)
T ss_pred HHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567788886543222 23466554 4899999999 999999999999 9999999999 88888865 47
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 182 ~tii~~ 187 (213)
T cd03259 182 ITTIYV 187 (213)
T ss_pred CEEEEE
Confidence 777655
No 26
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.7e-24 Score=183.49 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=126.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CcccChhhhhh--------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS-------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~-------------- 58 (248)
-+.|++||||+||||.+|+|.|+++|++|+|.|+|.+... ..++| .+.+++.|.+.
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~ 108 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ 108 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH
Confidence 4689999999999999999999999999999999987643 34555 45788888875
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 59 --~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
+..||+++++..+.... .+.++++ +...+..++.+ +|+++|||||++ |||.+.+-+- +.+.+++++|.+|
T Consensus 109 ~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviH--ePeLlILDEPFSGLDPVN~elLk-~~I~~lk~~GatI 183 (300)
T COG4152 109 KKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIH--EPELLILDEPFSGLDPVNVELLK-DAIFELKEEGATI 183 (300)
T ss_pred HHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhc--CCCEEEecCCccCCChhhHHHHH-HHHHHHHhcCCEE
Confidence 78899999998765544 4556664 33666778888 999999999999 9999986666 8999998899999
Q ss_pred EEEEecccccccChHHHHHHHHHHHHHHHhhCCCe
Q 025795 134 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (248)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (248)
+ +++|.+...+..|+.+++...+...+..+.
T Consensus 184 i----fSsH~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 184 I----FSSHRMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred E----EecchHHHHHHHhhhhheecCCceEEeccH
Confidence 5 568999999999998877655544333333
No 27
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.91 E-value=1.5e-24 Score=177.87 Aligned_cols=143 Identities=19% Similarity=0.236 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------ 58 (248)
-+++|+||+|||||||++.++|+..|.+|.|+++|.|... +.+ ..+..+||.+++.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~ 105 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAE 105 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHH
Confidence 4789999999999999999999999999999999987532 111 1123456777664
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++.+..++|++....+.. ..++++ ++++|||+++. +.+++++|||++ |||.-+.++. .++..+.. ++
T Consensus 106 ~r~~v~~aa~~vGl~~~~~RLP--~~LSGGqRQRvALARclvR--~~PilLLDEPFsALdP~LR~eMl-~Lv~~l~~E~~ 180 (231)
T COG3840 106 QREKVEAAAAQVGLAGFLKRLP--GELSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRAEML-ALVSQLCDERK 180 (231)
T ss_pred HHHHHHHHHHHhChhhHhhhCc--cccCchHHHHHHHHHHHhc--cCCeEEecCchhhcCHHHHHHHH-HHHHHHHHhhC
Confidence 788999999988765553 345555 45999999999 899999999999 9999999999 99999875 58
Q ss_pred CeEEEEEecccccccChHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
.|+++| +|...|.....+.+
T Consensus 181 ~TllmV----TH~~~Da~~ia~~~ 200 (231)
T COG3840 181 MTLLMV----THHPEDAARIADRV 200 (231)
T ss_pred CEEEEE----eCCHHHHHHhhhce
Confidence 888777 57777777665544
No 28
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.91 E-value=7e-24 Score=180.70 Aligned_cols=129 Identities=21% Similarity=0.272 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999875421 12333 23456766653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 185 (218)
T cd03255 111 GVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALAN--DPKIILADEPTGNLDSETGKEVM-ELLRE 185 (218)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45677788887543222 24466554 4899999999 999999999999 9999999998 88999
Q ss_pred HHh-CCCeEEEE
Q 025795 126 LKS-RNFNVCAV 136 (248)
Q Consensus 126 l~~-~~~~ii~v 136 (248)
+.+ .|.+++++
T Consensus 186 ~~~~~~~tii~~ 197 (218)
T cd03255 186 LNKEAGTTIVVV 197 (218)
T ss_pred HHHhcCCeEEEE
Confidence 876 57787666
No 29
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.91 E-value=1.2e-23 Score=179.16 Aligned_cols=140 Identities=17% Similarity=0.256 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+. +.+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 111 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGD 111 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999876431 1122 233457777663
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.++|
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 186 (218)
T cd03266 112 ELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVH--DPPVLLLDEPTTGLDVMATRALR-EFIRQLRALG 186 (218)
T ss_pred HHHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHCC
Confidence 35577888886543222 34465554 3899999999 999999999999 9999999999 8898887667
Q ss_pred CeEEEEEecccccccChHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.+++++ +|...+...++
T Consensus 187 ~tii~~----tH~~~~~~~~~ 203 (218)
T cd03266 187 KCILFS----THIMQEVERLC 203 (218)
T ss_pred CEEEEE----eCCHHHHHHhc
Confidence 787666 45544444443
No 30
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.91 E-value=8.7e-24 Score=189.30 Aligned_cols=143 Identities=17% Similarity=0.249 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTR 110 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999876521 12222 33567777664
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+.|
T Consensus 111 ~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~g 185 (303)
T TIGR01288 111 EIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALIN--DPQLLILDEPTTGLDPHARHLIW-ERLRSLLARG 185 (303)
T ss_pred HHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCC
Confidence 23467777886543332 34566654 4899999999 999999999999 9999999999 8999987778
Q ss_pred CeEEEEEecccccccChHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
.+++++ +|...+...+++.+
T Consensus 186 ~til~~----sH~~~~~~~~~d~i 205 (303)
T TIGR01288 186 KTILLT----THFMEEAERLCDRL 205 (303)
T ss_pred CEEEEE----CCCHHHHHHhCCEE
Confidence 887655 56666556555543
No 31
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.1e-24 Score=178.54 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=120.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~---------- 58 (248)
-+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ++......++++|.+.
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~ 107 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR 107 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC
Confidence 4689999999999999999999999999999999987632 2222222346666664
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCC----CEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDD----DYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p----~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++.+|+..++....++.|..-.-.+++++.+||.|++...| +++++||||+ ||+..+...+ ++.+.
T Consensus 108 ~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl-~laR~ 186 (259)
T COG4559 108 EPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL-RLARQ 186 (259)
T ss_pred CchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHH-HHHHH
Confidence 67788899988877777654334445679999999976443 5999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccChHHHHHHHHHHHHH-HHhhCCCe
Q 025795 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPH 168 (248)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~-~~~~~~p~ 168 (248)
+.++|..+++| ++| +.-.+.|++.+++...+ .+..+.|.
T Consensus 187 la~~g~~V~~V-LHD---LNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 187 LAREGGAVLAV-LHD---LNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHhcCCcEEEE-Ecc---chHHHHhhheeeeeeCCeEeecCCHH
Confidence 99888888777 344 44446777777665433 33444444
No 32
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1e-23 Score=180.07 Aligned_cols=140 Identities=14% Similarity=0.250 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+. +.+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999865421 1122 233456666552
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADRL--VKTYSGGMRRRLEIARSLVH--RPEVLFLDEPTIGLDPQTRAHVW-EYIEKLKEEF 181 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhc
Confidence 45677888886543222 34566654 3899999999 999999999999 9999999998 888888765
Q ss_pred CCeEEEEEecccccccChHHHH
Q 025795 130 NFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
|.+++++ +|...+...++
T Consensus 182 ~~tvi~~----tH~~~~~~~~~ 199 (220)
T cd03265 182 GMTILLT----THYMEEAEQLC 199 (220)
T ss_pred CCEEEEE----eCCHHHHHHhC
Confidence 7777665 45554444443
No 33
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.91 E-value=1.5e-23 Score=178.19 Aligned_cols=140 Identities=19% Similarity=0.252 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| .+..++++++.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999876531 12333 22356666553
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 183 (214)
T TIGR02673 109 KKEREIQRRVGAALRQVGLEHKADAF--PEQLSGGEQQRVAIARAIVN--SPPLLLADEPTGNLDPDLSERIL-DLLKRL 183 (214)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34567778886532222 24465554 4899999999 999999999999 9999999999 889888
Q ss_pred HhCCCeEEEEEecccccccChHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.++|.+++++ +|...+...++
T Consensus 184 ~~~~~tii~~----tH~~~~~~~~~ 204 (214)
T TIGR02673 184 NKRGTTVIVA----THDLSLVDRVA 204 (214)
T ss_pred HHcCCEEEEE----eCCHHHHHHhc
Confidence 7667777665 45554444433
No 34
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.1e-24 Score=182.34 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~------- 58 (248)
-.++|+||+|||||||+|+|.|+..|+.|+|.++|.++.. +.++..+.+++.+++.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 3689999999999999999999999999999999987643 3344455666666663
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+-+.++++|+.+..... .+.++++ +|++|||+|++ +|++++.|||++ |||.+.+.+
T Consensus 111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q--~pkiILADEPvasLDp~~a~~V 186 (258)
T COG3638 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQ--QPKIILADEPVASLDPESAKKV 186 (258)
T ss_pred hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhc--CCCEEecCCcccccChhhHHHH
Confidence 56778888888765444 4567765 45999999999 999999999998 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCe
Q 025795 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH 168 (248)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~ 168 (248)
| ++++++.+ .|.|+++. .|.+.-..+|+..++-...+.+.++.|.
T Consensus 187 m-~~l~~in~~~g~Tvi~n----LH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 187 M-DILKDINQEDGITVIVN----LHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred H-HHHHHHHHHcCCEEEEE----echHHHHHHHHhhheEecCCcEEEeCCh
Confidence 9 99999875 57887543 4556556788887766665555555554
No 35
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.7e-23 Score=177.43 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCCCcccChhhhhh--------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPVAMDIRELIS-------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y~~~~~i~e~i~-------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+.+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR 106 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH
Confidence 4689999999999999999999999999999999876421 1222233457776653
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 59 --LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 59 --~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+++.++
T Consensus 107 ~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~~lllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ti 181 (210)
T cd03269 107 RRIDEWLERLELSEYANKR--VEELSKGNQQKVQFIAAVIH--DPELLILDEPFSGLDPVNVELLK-DVIRELARAGKTV 181 (210)
T ss_pred HHHHHHHHHcCChHHHhCc--HhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 34567777876432222 24466654 3889999999 999999999999 9999999999 8888887667777
Q ss_pred EEEEecccccccChHHHHH
Q 025795 134 CAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (248)
+++ +|...+...+++
T Consensus 182 i~~----sH~~~~~~~~~d 196 (210)
T cd03269 182 ILS----THQMELVEELCD 196 (210)
T ss_pred EEE----CCCHHHHHHhhh
Confidence 655 455544444433
No 36
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7.4e-24 Score=181.02 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-------CcccChhhhhh---------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y-------~~~~~i~e~i~--------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 110 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARE 110 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHH
Confidence 4789999999999999999999999999999999876521 22222 23456766653
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.++
T Consensus 111 ~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~~~~~~~~ti 185 (220)
T cd03293 111 RAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAV--DPDVLLLDEPFSALDALTREQLQ-EELLDIWRETGKTV 185 (220)
T ss_pred HHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCEE
Confidence 34567788886532222 23455554 4899999999 999999999999 9999999999 88888854 47777
Q ss_pred EEEEecccccccChHHHH
Q 025795 134 CAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 134 i~v~l~d~~~~~d~~~~~ 151 (248)
+++ +|...+...++
T Consensus 186 ii~----sH~~~~~~~~~ 199 (220)
T cd03293 186 LLV----THDIDEAVFLA 199 (220)
T ss_pred EEE----ecCHHHHHHhC
Confidence 665 45554334443
No 37
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.7e-24 Score=176.55 Aligned_cols=140 Identities=22% Similarity=0.350 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------C-----------------CCCCCc-c
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------E-----------------NFDYPV-A 50 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~-----------------~~~y~~-~ 50 (248)
-+++++||||+|||||+.+++.+++.++|+|+++|++.+. + .+||.+ .
T Consensus 28 ~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGR 107 (252)
T COG4604 28 GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGR 107 (252)
T ss_pred ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCC
Confidence 4689999999999999999999999999999999988643 1 223321 2
Q ss_pred cChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 51 MDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 51 ~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++-.+...++++++.++|.+...+. ++.++++++ ..+|..+++ +.+|++||||.+ ||......+| ++++++.
T Consensus 108 lt~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQ--dTdyvlLDEPLNNLDmkHsv~iM-k~Lrrla 182 (252)
T COG4604 108 LTKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQ--DTDYVLLDEPLNNLDMKHSVQIM-KILRRLA 182 (252)
T ss_pred CchHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeec--cCcEEEecCcccccchHHHHHHH-HHHHHHH
Confidence 3344444489999999999876655 677888765 788999999 999999999998 9999999999 9999998
Q ss_pred h-CCCeEEEEEecccccccChH
Q 025795 128 S-RNFNVCAVYLLDSQFITDVT 148 (248)
Q Consensus 128 ~-~~~~ii~v~l~d~~~~~d~~ 148 (248)
. .|+++++| ++|..+.+-.+
T Consensus 183 ~el~KtiviV-lHDINfAS~Ys 203 (252)
T COG4604 183 DELGKTIVVV-LHDINFASCYS 203 (252)
T ss_pred HHhCCeEEEE-EecccHHHhhh
Confidence 5 48888776 56776665443
No 38
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=1.5e-23 Score=177.27 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC--------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY--------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y--------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.| ....+++|++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQ 106 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHH
Confidence 4789999999999999999999999999999999876421 12222 11346766653
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++++++|.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (205)
T cd03226 107 AETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLS--GKDLLIFDEPTSGLDYKNMERVG-ELIRELAAQGKAVIV 181 (205)
T ss_pred HHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45678888987643332 23466554 4899999999 999999999999 9999999998 889988766777766
Q ss_pred EEecccccccChHHH
Q 025795 136 VYLLDSQFITDVTKF 150 (248)
Q Consensus 136 v~l~d~~~~~d~~~~ 150 (248)
+ +|...+...+
T Consensus 182 ~----sH~~~~~~~~ 192 (205)
T cd03226 182 I----THDYEFLAKV 192 (205)
T ss_pred E----eCCHHHHHHh
Confidence 5 4554433333
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.1e-23 Score=181.73 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 4689999999999999999999999999999999865421 12223 23457766653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ +++++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 181 (235)
T cd03261 107 RLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALAL--DPELLLYDEPTAGLDPIASGVID-DLIRS 181 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHH
Confidence 34567788886543222 24566654 4899999999 999999999999 9999999999 88898
Q ss_pred HHh-CCCeEEEEEecccccccChHHHH
Q 025795 126 LKS-RNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
+.+ .|.+++++ +|...+...++
T Consensus 182 ~~~~~~~tvi~v----sH~~~~~~~~~ 204 (235)
T cd03261 182 LKKELGLTSIMV----THDLDTAFAIA 204 (235)
T ss_pred HHHhcCcEEEEE----ecCHHHHHHhc
Confidence 876 47787665 45554334333
No 40
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.91 E-value=1.1e-23 Score=178.99 Aligned_cols=129 Identities=18% Similarity=0.263 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999876421 12222 23456776653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 182 (214)
T cd03292 108 VPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVN--SPTILIADEPTGNLDPDTTWEIM-NLLKKI 182 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34567778886532222 23455554 4899999999 999999999999 9999999998 888888
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
.++|.+++++
T Consensus 183 ~~~~~tiiiv 192 (214)
T cd03292 183 NKAGTTVVVA 192 (214)
T ss_pred HHcCCEEEEE
Confidence 6667777666
No 41
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=192.50 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... +.....+.+++++++.
T Consensus 31 e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE 110 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHH
Confidence 3689999999999999999999999999999999976532 2222345678888774
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
++++++.+|+.+..... ...+++++ +++|||+++. +|+++|+|||++ ||+.++..+. +.++++.++ |
T Consensus 111 ~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~QRvalARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 185 (356)
T PRK11650 111 IEERVAEAARILELEPLLDRK--PRELSGGQRQRVAMGRAIVR--EPAVFLFDEPLSNLDAKLRVQMR-LEIQRLHRRLK 185 (356)
T ss_pred HHHHHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45678888997654443 24566654 4999999999 999999999999 9999999988 888888654 8
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++++| +|...+...+++
T Consensus 186 ~tii~v----THd~~ea~~l~D 203 (356)
T PRK11650 186 TTSLYV----THDQVEAMTLAD 203 (356)
T ss_pred CEEEEE----eCCHHHHHHhCC
Confidence 888766 455544444433
No 42
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=2.4e-23 Score=176.27 Aligned_cols=140 Identities=15% Similarity=0.225 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+. +.+..++++++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 106 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKR 106 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHH
Confidence 4689999999999999999999999999999999876531 1122 233567777663
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
++++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++++.+.++++
T Consensus 107 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~ 181 (208)
T cd03268 107 IDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLG--NPDLLILDEPTNGLDPDGIKELR-ELILSLRDQGITVLI 181 (208)
T ss_pred HHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEE
Confidence 45677888886543222 34455554 3899999999 999999999999 9999999998 888888766777765
Q ss_pred EEecccccccChHHHH
Q 025795 136 VYLLDSQFITDVTKFI 151 (248)
Q Consensus 136 v~l~d~~~~~d~~~~~ 151 (248)
+ +|...+...++
T Consensus 182 ~----tH~~~~~~~~~ 193 (208)
T cd03268 182 S----SHLLSEIQKVA 193 (208)
T ss_pred E----cCCHHHHHHhc
Confidence 5 45554444333
No 43
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=4.2e-24 Score=184.12 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999876421 12333 23456666542
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 182 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLADRP--AGELSYGQQRRLEIARALAT--DPKLLLLDEPAAGLNPEETEEL 182 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHH
Confidence 34566777876543222 34566654 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
. ++++++.+.|.+++++ +|...+...+++
T Consensus 183 ~-~~l~~~~~~~~tii~v----sH~~~~~~~~~d 211 (236)
T cd03219 183 A-ELIRELRERGITVLLV----EHDMDVVMSLAD 211 (236)
T ss_pred H-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 9 8888887667777655 455544444433
No 44
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.90 E-value=1.3e-23 Score=180.61 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS 106 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999875421 12333 23456766653
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 181 (232)
T cd03218 107 KKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALAT--NPKFLLLDEPFAGVDPIAVQDIQ-KIIKILKD 181 (232)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567777876533222 23455554 4899999999 999999999999 9999999999 88988876
Q ss_pred CCCeEEEEEecccccccChHHH
Q 025795 129 RNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+.+++++ +|...+...+
T Consensus 182 ~~~tii~~----sH~~~~~~~~ 199 (232)
T cd03218 182 RGIGVLIT----DHNVRETLSI 199 (232)
T ss_pred CCCEEEEE----eCCHHHHHHh
Confidence 67777655 4554433433
No 45
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=1.1e-23 Score=178.69 Aligned_cols=140 Identities=20% Similarity=0.216 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~ 107 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP 107 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999875421 12222 12346666543
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 108 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~ 182 (211)
T cd03225 108 EEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAM--DPDILLLDEPTAGLDPAGRRELL-ELLKKLKA 182 (211)
T ss_pred HHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567778886432222 23455554 4899999999 999999999999 9999999999 88888876
Q ss_pred CCCeEEEEEecccccccChHHHH
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
+|.+++++ +|...+...++
T Consensus 183 ~~~tvi~~----sH~~~~~~~~~ 201 (211)
T cd03225 183 EGKTIIIV----THDLDLLLELA 201 (211)
T ss_pred cCCEEEEE----eCCHHHHHHhC
Confidence 67777655 45554444433
No 46
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.90 E-value=1.3e-23 Score=194.64 Aligned_cols=145 Identities=19% Similarity=0.264 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 30 eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 30 SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 4689999999999999999999999999999999977532 11222 23455655441
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++++++.+++.+..... ...+++++ ++.||++|++ +|+++||||||+ ||+.++..++ +++++
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~--~P~iLLLDEPtsgLD~~~~~~l~-~lL~~ 184 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQ--ATPVLLLDEPTASLDINHQVRTL-ELVRR 184 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 56778888987654333 23455554 4999999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795 126 LKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
+.++|.+++++ +|.+.+..++++.+++
T Consensus 185 l~~~g~TIIiv----sHdl~~~~~~adrii~ 211 (402)
T PRK09536 185 LVDDGKTAVAA----IHDLDLAARYCDELVL 211 (402)
T ss_pred HHhcCCEEEEE----ECCHHHHHHhCCEEEE
Confidence 97667777655 5666666666665443
No 47
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=2.4e-23 Score=174.01 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~-------~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + ...++++++.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~ 98 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG 98 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999866421 11222 1 1236666553
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~ 173 (190)
T TIGR01166 99 LSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAM--RPDVLLLDEPTAGLDPAGREQML-AILRRL 173 (190)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 34567778886543322 23455553 4899999999 999999999999 9999999998 888988
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
+++|.+++++
T Consensus 174 ~~~~~tili~ 183 (190)
T TIGR01166 174 RAEGMTVVIS 183 (190)
T ss_pred HHcCCEEEEE
Confidence 7667787666
No 48
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.90 E-value=2.2e-23 Score=178.94 Aligned_cols=129 Identities=18% Similarity=0.072 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCcccChhhhhh----------------HHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS----------------LEDVME 64 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y~~~~~i~e~i~----------------~~~~m~ 64 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ....+.+..++++++. +.++++
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 128 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE 128 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999876431 2233455667777653 344566
Q ss_pred HhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 65 ELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.+++.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.+++.+. ++++++.+++.+++++
T Consensus 129 ~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~~~tiii~ 198 (224)
T cd03220 129 FSELGDFIDLP--VKTYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQGKTVILV 198 (224)
T ss_pred HcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 67776543332 24455554 3889999999 999999999999 9999999999 8888886667777665
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.90 E-value=2.2e-23 Score=186.53 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCC-------CCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFD-------YPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~-------y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.+. +.+.++++|++.
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 108 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHH
Confidence 4789999999999999999999999999999999976532 1222 234567777763
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++++++++ +
T Consensus 109 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lliLDEPt~gLD~~~~~~l~-~~l~~~~~-~ 182 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIH--DPKVLILDEPTTGLDPNQLVEIR-NVIKNIGK-D 182 (301)
T ss_pred HHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHhcC-C
Confidence 45667788888654333 24466654 4899999999 999999999999 9999999988 88888854 6
Q ss_pred CeEEEEEecccccccChHHHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
.+++++ +|...+...+|+.++.
T Consensus 183 ~tiii~----sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 183 KTIILS----THIMQEVEAICDRVII 204 (301)
T ss_pred CEEEEE----cCCHHHHHHhCCEEEE
Confidence 676544 6777777777665433
No 50
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.1e-24 Score=186.47 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=107.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC---Cc-----ccChhhhhh---------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY---PV-----AMDIRELIS--------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y---~~-----~~~i~e~i~--------- 58 (248)
.++|+||||||||||+++++|+++|++|.|.++|.+... +.++| .| .-+|.+-+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~ 111 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLP 111 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCC
Confidence 689999999999999999999999999999999977431 22222 11 224444442
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++++.+|+....... ...+++++ +++||.+|+. +|+++||||||+ ||+.+++.++ +++++|.+
T Consensus 112 ~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~--~P~iliLDEPta~LD~~~~~~l~-~~l~~L~~ 186 (235)
T COG1122 112 REEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAM--GPEILLLDEPTAGLDPKGRRELL-ELLKKLKE 186 (235)
T ss_pred HHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 77889999998764333 34566654 4999999999 999999999999 9999999999 99999987
Q ss_pred C-CCeEEEEEecccccccChHHHHH
Q 025795 129 R-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
. |.+++++ +|.+.....+++
T Consensus 187 ~~~~tii~~----tHd~~~~~~~ad 207 (235)
T COG1122 187 EGGKTIIIV----THDLELVLEYAD 207 (235)
T ss_pred cCCCeEEEE----eCcHHHHHhhCC
Confidence 6 6777655 566655555544
No 51
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.90 E-value=2.8e-23 Score=176.41 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDE 106 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999999876422 12223 23457776653
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.+++.+. ++++++.+ .+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 181 (213)
T cd03301 107 IDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVR--EPKVFLMDEPLSNLDAKLRVQMR-AELKRLQQRLG 181 (213)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567778876432222 23455554 4899999999 999999999999 9999999999 88998875 47
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 182 ~tvi~~ 187 (213)
T cd03301 182 TTTIYV 187 (213)
T ss_pred CEEEEE
Confidence 777665
No 52
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=3.7e-23 Score=175.52 Aligned_cols=139 Identities=20% Similarity=0.252 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-------CcccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 106 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG 106 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 4789999999999999999999999999999999875421 22333 22456666552
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 107 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 181 (213)
T cd03262 107 MSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAM--NPKVMLFDEPTSALDPELVGEVL-DVMKDL 181 (213)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 34567777876532222 23455554 3899999999 999999999999 9999999988 889998
Q ss_pred HhCCCeEEEEEecccccccChHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+.|.+++++ +|...+...+
T Consensus 182 ~~~~~tvi~~----sh~~~~~~~~ 201 (213)
T cd03262 182 AEEGMTMVVV----THEMGFAREV 201 (213)
T ss_pred HHcCCEEEEE----eCCHHHHHHh
Confidence 7667777655 3544433333
No 53
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=3e-24 Score=183.33 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~--------- 58 (248)
-++++||||||||||++++++|+++|++|+|.+.|.|... |....++++|+-|++.
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 4799999999999999999999999999999999987642 3344466788877764
Q ss_pred -------------------HHHHHHHhCCCCCCchhhhHHhhhhh-H-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 59 -------------------LEDVMEELGLGPNGGLIYCMEHLEDN-L-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 59 -------------------~~~~m~~~~L~~~~~~~~~~~~l~~~-~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
+.++++.+||.+....... .++.+ + ++.||++|+. +|++|++|||.+ +.+....
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~--~LsyG~qR~LEIArALa~--~P~lLLLDEPaAGln~~e~~ 186 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAG--NLSYGQQRRLEIARALAT--QPKLLLLDEPAAGLNPEETE 186 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh--cCChhHhHHHHHHHHHhc--CCCEEEecCccCCCCHHHHH
Confidence 4567788899877554422 23333 2 2899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEE
Q 025795 117 PVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v 136 (248)
++. ++++++++ .|.++++|
T Consensus 187 ~l~-~~i~~i~~~~g~tillI 206 (250)
T COG0411 187 ELA-ELIRELRDRGGVTILLI 206 (250)
T ss_pred HHH-HHHHHHHhcCCcEEEEE
Confidence 999 99999987 46888777
No 54
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=4.2e-23 Score=174.31 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++. +
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQV 106 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHH
Confidence 4789999999999999999999999999999999876531 12222 23457777663 5
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++++.+++.+..... ...+++++ ++.+|++++. +|+++|+||||+ ||+.+++.+. ++++++.++|.+++++
T Consensus 107 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 181 (201)
T cd03231 107 EEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLS--GRPLWILDEPTTALDKAGVARFA-EAMAGHCARGGMVVLT 181 (201)
T ss_pred HHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 6778888887543222 34455554 4899999999 999999999999 9999999998 8888887667777655
No 55
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.4e-23 Score=176.61 Aligned_cols=140 Identities=20% Similarity=0.241 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 104 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAE 104 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHH
Confidence 4789999999999999999999999999999999876421 11222 23456666542
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+ .+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~ 179 (211)
T cd03298 105 DRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVR--DKPVLLLDEPFAALDPALRAEML-DLVLDLHAETK 179 (211)
T ss_pred HHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45667788886532222 23455554 3899999999 999999999999 9999999999 88888865 47
Q ss_pred CeEEEEEecccccccChHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.+++++ +|...+...++
T Consensus 180 ~tii~~----sH~~~~~~~~~ 196 (211)
T cd03298 180 MTVLMV----THQPEDAKRLA 196 (211)
T ss_pred CEEEEE----ecCHHHHHhhh
Confidence 787665 45554444433
No 56
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=3.4e-23 Score=189.17 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ++....|.+++++++.
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~ 110 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE 110 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999999976532 2222345678888774
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.+..... ...+++++ +++|||+|+. +|+++|+|||++ ||..++..+. +.++++.+ .|
T Consensus 111 ~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~~ 185 (353)
T TIGR03265 111 VAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALAT--SPGLLLLDEPLSALDARVREHLR-TEIRQLQRRLG 185 (353)
T ss_pred HHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788889998754443 24566654 4999999999 999999999999 9999999988 88888765 48
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++++| +|...+...+++
T Consensus 186 ~tvi~v----THd~~ea~~l~d 203 (353)
T TIGR03265 186 VTTIMV----THDQEEALSMAD 203 (353)
T ss_pred CEEEEE----cCCHHHHHHhCC
Confidence 888766 455554444433
No 57
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.8e-23 Score=189.15 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999976531 22333 23467777664
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~iLlLDEPts~LD~~~~~~l~-~~L~~l 186 (343)
T PRK11153 112 TPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALAS--NPKVLLCDEATSALDPATTRSIL-ELLKDI 186 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34677888887543322 23466654 4899999999 999999999999 9999999999 999998
Q ss_pred HhC-CCeEEEEEecccccccChHHHHHHH
Q 025795 127 KSR-NFNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
.++ |.+++++ +|...+...+++.+
T Consensus 187 ~~~~g~tiilv----tH~~~~i~~~~d~v 211 (343)
T PRK11153 187 NRELGLTIVLI----THEMDVVKRICDRV 211 (343)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCCEE
Confidence 654 7887665 46555545554433
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.4e-23 Score=181.20 Aligned_cols=141 Identities=14% Similarity=0.185 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-------CcccChhhhhh---------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-------PVAMDIRELIS--------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y-------~~~~~i~e~i~--------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHH
Confidence 4789999999999999999999999999999999876521 11222 23356666553
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++
T Consensus 108 ~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tv 182 (255)
T PRK11248 108 IAHQMLKKVGLEGAEKRY--IWQLSGGQRQRVGIARALAA--NPQLLLLDEPFGALDAFTREQMQ-TLLLKLWQETGKQV 182 (255)
T ss_pred HHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45677888886532222 34566654 4899999999 999999999999 9999999999 88888854 57787
Q ss_pred EEEEecccccccChHHHHH
Q 025795 134 CAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 134 i~v~l~d~~~~~d~~~~~s 152 (248)
+++ +|...+...+++
T Consensus 183 iiv----sH~~~~~~~~~d 197 (255)
T PRK11248 183 LLI----THDIEEAVFMAT 197 (255)
T ss_pred EEE----eCCHHHHHHhCC
Confidence 665 455544444443
No 59
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=3.2e-23 Score=177.31 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. +.+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 4689999999999999999999999999999999875421 12222 23456666653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~ 183 (222)
T PRK10908 109 ASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVN--KPAVLLADEPTGNLDDALSEGIL-RLFEEF 183 (222)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHH
Confidence 34567788886532222 23455554 4899999999 999999999999 9999999999 888888
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
++++.+++++
T Consensus 184 ~~~~~tiii~ 193 (222)
T PRK10908 184 NRVGVTVLMA 193 (222)
T ss_pred HHCCCEEEEE
Confidence 7667777665
No 60
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.90 E-value=3.2e-23 Score=178.57 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCCCcccChhhhhh---------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDYPVAMDIRELIS--------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y~~~~~i~e~i~--------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +...+.+..++++++.
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~ 91 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSER 91 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence 4789999999999999999999999999999999876532 1111223456666543
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CC
Q 025795 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NF 131 (248)
Q Consensus 59 ---~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~ 131 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++ |.
T Consensus 92 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~~~~~ 166 (230)
T TIGR01184 92 RAIVEEHIALVGLTEAADKR--PGQLSGGMKQRVAIARALSI--RPKVLLLDEPFGALDALTRGNLQ-EELMQIWEEHRV 166 (230)
T ss_pred HHHHHHHHHHcCCHHHHcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 34557777876432222 34466654 4899999999 999999999999 9999999999 888888654 77
Q ss_pred eEEEEEecccccccChHHHHH
Q 025795 132 NVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 132 ~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++++ +|...+...+++
T Consensus 167 tii~~----sH~~~~~~~~~d 183 (230)
T TIGR01184 167 TVLMV----THDVDEALLLSD 183 (230)
T ss_pred EEEEE----eCCHHHHHHhcC
Confidence 77665 455544444444
No 61
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.5e-23 Score=176.96 Aligned_cols=139 Identities=15% Similarity=0.204 Sum_probs=103.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999876421 12222 23457776653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~~ 186 (233)
T cd03258 112 VPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALAN--NPKVLLCDEATSALDPETTQSIL-ALLRDI 186 (233)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCCcCCHHHHHHHH-HHHHHH
Confidence 34567778886543222 23455554 4899999999 999999999999 9999999999 888888
Q ss_pred HhC-CCeEEEEEecccccccChHHH
Q 025795 127 KSR-NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.++ |.+++++ +|...+...+
T Consensus 187 ~~~~~~tvii~----sH~~~~~~~~ 207 (233)
T cd03258 187 NRELGLTIVLI----THEMEVVKRI 207 (233)
T ss_pred HHHcCCEEEEE----eCCHHHHHHh
Confidence 764 7787665 4554433333
No 62
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.3e-23 Score=179.22 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 4689999999999999999999999999999999876421 12222 22356665543
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 24557777876432222 23455554 4899999999 999999999999 9999999999 8999987
Q ss_pred hC-CCeEEEE
Q 025795 128 SR-NFNVCAV 136 (248)
Q Consensus 128 ~~-~~~ii~v 136 (248)
++ |.+++++
T Consensus 184 ~~~~~tvii~ 193 (239)
T cd03296 184 DELHVTTVFV 193 (239)
T ss_pred HHcCCEEEEE
Confidence 64 7787665
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.90 E-value=4.3e-23 Score=176.08 Aligned_cols=139 Identities=16% Similarity=0.209 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 108 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS 108 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHH
Confidence 4689999999999999999999999999999999876421 11222 23456766653
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANKR--ARTLSGGMKRKLSLAIALIG--GPSVLLLDEPTSGLDPASRRAIW-DLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhCh--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCCCCCCHHHHHHHH-HHHHHHhc-C
Confidence 34567778886532222 23455554 4899999999 999999999999 9999999999 88888865 5
Q ss_pred CeEEEEEecccccccChHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.+++++ +|.......++
T Consensus 183 ~tii~~----sH~~~~~~~~~ 199 (220)
T cd03263 183 RSIILT----THSMDEAEALC 199 (220)
T ss_pred CEEEEE----cCCHHHHHHhc
Confidence 666555 45554444443
No 64
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.90 E-value=3.1e-23 Score=179.44 Aligned_cols=140 Identities=18% Similarity=0.245 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 4789999999999999999999999999999999866421 11222 23456666552
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++....... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 184 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQ--QPDLILADEPIASLDPKTSKQV 184 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 34567777776432222 23455554 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccChHHHH
Q 025795 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
. ++++++.+ .|.+++++ +|.......++
T Consensus 185 ~-~~l~~~~~~~~~tiii~----tH~~~~~~~~~ 213 (243)
T TIGR02315 185 M-DYLKRINKEDGITVIIN----LHQVDLAKKYA 213 (243)
T ss_pred H-HHHHHHHHHcCCEEEEE----eCCHHHHHHhc
Confidence 8 88888865 47777665 45554434443
No 65
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=7.2e-23 Score=173.16 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCC-------CCCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENF-------DYPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~-------~y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.+ .+.+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 107 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDD 107 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHH
Confidence 4689999999999999999999999999999999876421 111 2233457776653
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 59 --LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 59 --~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++++.+.++
T Consensus 108 ~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ti 182 (204)
T PRK13538 108 EALWEALAQVGLAGFEDVP--VRQLSAGQQRRVALARLWLT--RAPLWILDEPFTAIDKQGVARLE-ALLAQHAEQGGMV 182 (204)
T ss_pred HHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEE
Confidence 45677888886432222 24455554 3899999999 999999999999 9999999998 8899887667777
Q ss_pred EEE
Q 025795 134 CAV 136 (248)
Q Consensus 134 i~v 136 (248)
+++
T Consensus 183 ii~ 185 (204)
T PRK13538 183 ILT 185 (204)
T ss_pred EEE
Confidence 665
No 66
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=9.3e-23 Score=175.76 Aligned_cols=129 Identities=15% Similarity=0.164 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999976421 22333 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 116 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 190 (233)
T PRK11629 116 KKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVN--NPRLVLADEPTGNLDARNADSIF-QLLGE 190 (233)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 35677888886543222 24466554 4899999999 999999999999 9999999999 88998
Q ss_pred HHh-CCCeEEEE
Q 025795 126 LKS-RNFNVCAV 136 (248)
Q Consensus 126 l~~-~~~~ii~v 136 (248)
+.+ .|.+++++
T Consensus 191 ~~~~~g~tvii~ 202 (233)
T PRK11629 191 LNRLQGTAFLVV 202 (233)
T ss_pred HHHhCCCEEEEE
Confidence 865 47787766
No 67
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.90 E-value=3.7e-23 Score=189.44 Aligned_cols=139 Identities=16% Similarity=0.272 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC--ceEEEeccCCCC------------CCCCCCcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR--RTMHIVNLDPAA------------ENFDYPVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~--G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ++....+.+++++++.
T Consensus 32 e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~ 111 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK 111 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCH
Confidence 3689999999999999999999999999 999999876531 2222345678888774
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
++++++.+++.+..... ...+++++ +++||++|+. +|+++|+|||++ ||+..+..+. +.++++.++
T Consensus 112 ~~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~l~~l~~~ 186 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAI--EPDVLLLDEPLSALDANIRANMR-EEIAALHEE 186 (362)
T ss_pred HHHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHh
Confidence 56778888998764443 34566654 4999999999 999999999999 9999999988 888888764
Q ss_pred --CCeEEEEEecccccccChHHH
Q 025795 130 --NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 130 --~~~ii~v~l~d~~~~~d~~~~ 150 (248)
|.++++| +|...+...+
T Consensus 187 ~~g~til~v----THd~~ea~~l 205 (362)
T TIGR03258 187 LPELTILCV----THDQDDALTL 205 (362)
T ss_pred CCCCEEEEE----eCCHHHHHHh
Confidence 6787665 4554443333
No 68
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.1e-23 Score=188.59 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+. +.+.+++++++.
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~ 109 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEE 109 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHH
Confidence 4689999999999999999999999999999999876421 1222 244567887764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
++++++.+++....... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.++ |
T Consensus 110 ~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~--~P~lLLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 184 (369)
T PRK11000 110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (369)
T ss_pred HHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHhC
Confidence 45677888887543333 24566654 4899999999 999999999999 9999999988 888888654 7
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 185 ~tvI~v 190 (369)
T PRK11000 185 RTMIYV 190 (369)
T ss_pred CEEEEE
Confidence 787666
No 69
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.1e-23 Score=187.86 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=108.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ++....+.+++++++.
T Consensus 33 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEE 112 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHH
Confidence 4789999999999999999999999999999999976421 2222345678888875
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
++++++.+++.+..... ...+++++ +++|||+++. +|+++|+|||++ ||+.++..+. +.++++.++ |
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 187 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALIL--KPKVLLFDEPLSNLDANLRRSMR-EKIRELQQQFN 187 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 35677888887654433 23466654 4999999999 999999999999 9999999988 888888654 7
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++++| +|...+...+++
T Consensus 188 ~tii~v----THd~~e~~~laD 205 (351)
T PRK11432 188 ITSLYV----THDQSEAFAVSD 205 (351)
T ss_pred CEEEEE----cCCHHHHHHhCC
Confidence 888666 455554444433
No 70
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.2e-23 Score=175.19 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~------------ 58 (248)
+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 689999999999999999999999999999999976431 11222 23457776653
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++++ +.
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~ 180 (211)
T cd03264 107 VKARVDEVLELVNLGDRAKKK--IGSLSGGMRRRVGIAQALVG--DPSILIVDEPTAGLDPEERIRFR-NLLSELGE-DR 180 (211)
T ss_pred HHHHHHHHHHHCCCHHHHhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHhC-CC
Confidence 34567777876432222 34466554 4899999999 999999999999 9999999998 88998865 56
Q ss_pred eEEEE
Q 025795 132 NVCAV 136 (248)
Q Consensus 132 ~ii~v 136 (248)
+++++
T Consensus 181 tii~v 185 (211)
T cd03264 181 IVILS 185 (211)
T ss_pred EEEEE
Confidence 66555
No 71
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.3e-23 Score=175.58 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999999999999998865421 12222 23456766653
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.+++.+. ++++++.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 178 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRY--PAQLSGGEKQRVALARALAA--QPELLLLDEPFSALDRALRLQLL-PELKQIK 178 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 34567788886432222 23455554 4899999999 999999999999 9999999999 8899887
Q ss_pred hC-CCeEEEE
Q 025795 128 SR-NFNVCAV 136 (248)
Q Consensus 128 ~~-~~~ii~v 136 (248)
++ |.+++++
T Consensus 179 ~~~~~tiii~ 188 (214)
T cd03297 179 KNLNIPVIFV 188 (214)
T ss_pred HHcCcEEEEE
Confidence 54 7777655
No 72
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.89 E-value=2e-23 Score=177.41 Aligned_cols=141 Identities=18% Similarity=0.335 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCC-------C--cccChhhhhh-------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDY-------P--VAMDIRELIS------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~~~~~y-------~--~~~~i~e~i~------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| . ...++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRL 105 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCC
Confidence 478999999999999999999999999999999986531 111111 0 1235555432
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 180 (213)
T cd03235 106 SKADKAKVDEALERVGLSELADRQ--IGELSGGQQQRVLLARALVQ--DPDLLLLDEPFAGVDPKTQEDIY-ELLRELRR 180 (213)
T ss_pred CHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh
Confidence 44567777776432222 23455554 4899999999 999999999999 9999999999 88888876
Q ss_pred CCCeEEEEEecccccccChHHHHH
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+|.+++++ +|...+...+++
T Consensus 181 ~~~tvi~~----sH~~~~~~~~~d 200 (213)
T cd03235 181 EGMTILVV----THDLGLVLEYFD 200 (213)
T ss_pred cCCEEEEE----eCCHHHHHHhcC
Confidence 67777655 455544444433
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.6e-23 Score=178.05 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 4789999999999999999999999999999999876421 12222 23456666553
Q ss_pred -----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 -----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQ--QPKLILADEPVASLDPASSRQV 183 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHH
Confidence 33456677776432222 23455554 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHh-CCCeEEEEEecccccccChHHH
Q 025795 119 LRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 119 ~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
. ++++++.+ .|.+++++ +|...+...+
T Consensus 184 ~-~~l~~~~~~~~~tii~~----tH~~~~~~~~ 211 (241)
T cd03256 184 M-DLLKRINREEGITVIVS----LHQVDLAREY 211 (241)
T ss_pred H-HHHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence 9 88888865 47777665 4555433333
No 74
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.89 E-value=5.8e-23 Score=188.04 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=108.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..|+++++.
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999976532 22333 44678888774
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+||....... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. +.+.+
T Consensus 100 ~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~--~p~iLLlDEP~saLD~~~r~~l~-~~l~~ 174 (363)
T TIGR01186 100 GWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAA--EPDILLMDEAFSALDPLIRDSMQ-DELKK 174 (363)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 45678888886543333 23566654 4899999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCeEEEEEecccccccChHHHHH
Q 025795 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.+ .+.+++++ +|.+.+..++++
T Consensus 175 l~~~~~~Tii~v----THd~~ea~~~~d 198 (363)
T TIGR01186 175 LQATLQKTIVFI----THDLDEAIRIGD 198 (363)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 865 47888766 355544444444
No 75
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.5e-22 Score=170.68 Aligned_cols=129 Identities=10% Similarity=0.075 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|+++|.+... +.+.| .+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 107 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVG 107 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHH
Confidence 4689999999999999999999999999999999876531 12222 34567877764
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
+.++++.++++...... ...++++. ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++.+.++++
T Consensus 108 ~~~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~~lilDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii 182 (200)
T PRK13540 108 ITELCRLFSLEHLIDYP--CGLLSSGQKRQVALLRLWMS--KAKLWLLDEPLVALDELSLLTII-TKIQEHRAKGGAVLL 182 (200)
T ss_pred HHHHHHHcCCchhhhCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 46678888886432222 23455543 4899999999 999999999999 9999999998 888888666777766
Q ss_pred E
Q 025795 136 V 136 (248)
Q Consensus 136 v 136 (248)
+
T Consensus 183 ~ 183 (200)
T PRK13540 183 T 183 (200)
T ss_pred E
Confidence 6
No 76
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=4.5e-23 Score=178.36 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-------CcccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRG 107 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcC
Confidence 4789999999999999999999999999999999876431 12222 23456665543
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 182 (240)
T PRK09493 108 ASKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAV--KPKLMLFDEPTSALDPELRHEVL-KVMQDL 182 (240)
T ss_pred CCHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 34677788886543222 23455554 3899999999 999999999999 9999999999 889988
Q ss_pred HhCCCeEEEEEecccccccChHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+++.+++++ +|...+...+
T Consensus 183 ~~~~~tiii~----sH~~~~~~~~ 202 (240)
T PRK09493 183 AEEGMTMVIV----THEIGFAEKV 202 (240)
T ss_pred HHcCCEEEEE----eCCHHHHHHh
Confidence 7667777655 4555444433
No 77
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.89 E-value=4.8e-23 Score=175.87 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+.+++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 106 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA 106 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCch
Confidence 4789999999999999999999999999999999865421 22333 23457777664
Q ss_pred -----HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 59 -----~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
+.++++.+ ++....... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++++++.+.
T Consensus 107 ~~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 181 (222)
T cd03224 107 KRKARLERVYELFPRLKERRKQL--AGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIRELRDE 181 (222)
T ss_pred hHHHHHHHHHHHHHhhhhhhhCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHC
Confidence 23445555 343322111 23455554 3899999999 999999999999 9999999999 888888766
Q ss_pred CCeEEEEEecccccccChHHHH
Q 025795 130 NFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
+.+++++ +|...+...++
T Consensus 182 ~~tiii~----sH~~~~~~~~~ 199 (222)
T cd03224 182 GVTILLV----EQNARFALEIA 199 (222)
T ss_pred CCEEEEE----eCCHHHHHHhc
Confidence 7777665 45544434443
No 78
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1.1e-22 Score=173.41 Aligned_cols=141 Identities=15% Similarity=0.085 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-------CcccChhhhhh-------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 117 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQM 117 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHH
Confidence 3689999999999999999999999999999999875421 11222 23457777653
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.++|.++++
T Consensus 118 ~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii 192 (214)
T PRK13543 118 PGSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLS--PAPLWLLDEPYANLDLEGITLVN-RMISAHLRGGGAALV 192 (214)
T ss_pred HHHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 34567778886543222 24455554 3899999999 999999999999 9999999988 889888777777765
Q ss_pred EEecccccccChHHHHH
Q 025795 136 VYLLDSQFITDVTKFIS 152 (248)
Q Consensus 136 v~l~d~~~~~d~~~~~s 152 (248)
+ +|...+...+++
T Consensus 193 ~----sH~~~~~~~~~~ 205 (214)
T PRK13543 193 T----THGAYAAPPVRT 205 (214)
T ss_pred E----ecChhhhhhhcc
Confidence 5 466655555544
No 79
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=6.8e-23 Score=177.54 Aligned_cols=129 Identities=22% Similarity=0.279 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK 107 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCH
Confidence 4689999999999999999999999999999999876421 12222 23457776653
Q ss_pred ------HHHHHHHhCCCC--CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 ------LEDVMEELGLGP--NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 ------~~~~m~~~~L~~--~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+.++++.+++.+ ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFADRY--PHELSGGQQQRVGVARALAA--DPPLLLMDEPFGALDPITRDQLQ-EEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHH
Confidence 456678888875 22221 24466654 3899999999 999999999999 9999999988 8888886
Q ss_pred hC-CCeEEEE
Q 025795 128 SR-NFNVCAV 136 (248)
Q Consensus 128 ~~-~~~ii~v 136 (248)
++ |.+++++
T Consensus 183 ~~~g~tvii~ 192 (242)
T cd03295 183 QELGKTIVFV 192 (242)
T ss_pred HHcCCEEEEE
Confidence 54 7777665
No 80
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=1e-22 Score=173.83 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999876421 12333 23456776653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~ 186 (221)
T TIGR02211 112 KKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVN--QPSLVLADEPTGNLDNNNAKIIF-DLMLE 186 (221)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 34677788886543222 24466654 4899999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCeEEEE
Q 025795 126 LKS-RNFNVCAV 136 (248)
Q Consensus 126 l~~-~~~~ii~v 136 (248)
+.+ .+.+++++
T Consensus 187 ~~~~~~~tii~~ 198 (221)
T TIGR02211 187 LNRELNTSFLVV 198 (221)
T ss_pred HHHhcCCEEEEE
Confidence 865 47777665
No 81
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.89 E-value=5.9e-23 Score=180.04 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C-------CCCCCCcccChhhhhh----------HHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS----------LEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~y~~~~~i~e~i~----------~~~~m 63 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. . +...+.+..++++++. +.+++
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l 118 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQAL 118 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHH
Confidence 478999999999999999999999999999998775431 1 2222233467777763 45678
Q ss_pred HHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEec
Q 025795 64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLL 139 (248)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~ 139 (248)
+.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++
T Consensus 119 ~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~~~tviiv--- 190 (257)
T PRK11247 119 AAVGLADRANEW--PAALSGGQKQRVALARALIH--RPGLLLLDEPLGALDALTRIEMQ-DLIESLWQQHGFTVLLV--- 190 (257)
T ss_pred HHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHHcCCEEEEE---
Confidence 888887543222 24566654 3899999999 999999999999 9999999999 88888754 47777665
Q ss_pred ccccccChHHHHH
Q 025795 140 DSQFITDVTKFIS 152 (248)
Q Consensus 140 d~~~~~d~~~~~s 152 (248)
+|...+...+++
T Consensus 191 -sHd~~~~~~~~d 202 (257)
T PRK11247 191 -THDVSEAVAMAD 202 (257)
T ss_pred -eCCHHHHHHhCC
Confidence 455544444444
No 82
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.89 E-value=8.6e-23 Score=186.53 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+ .+.+.+++++++.
T Consensus 29 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 3689999999999999999999999999999999976531 122 2234556666553
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. +.++++.
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~ 183 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAV--EPQILLLDEPFGALDAQVRKELR-RWLRQLH 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHH
Confidence 34567888887654333 24466654 4999999999 999999999999 9999999988 8888887
Q ss_pred hC-CCeEEEEEecccccccChHHHHH
Q 025795 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++ |.++++| +|...+...+++
T Consensus 184 ~~~g~tii~v----THd~~ea~~~~D 205 (353)
T PRK10851 184 EELKFTSVFV----THDQEEAMEVAD 205 (353)
T ss_pred HhcCCEEEEE----eCCHHHHHHhCC
Confidence 64 7787666 455544444433
No 83
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.9e-23 Score=180.97 Aligned_cols=139 Identities=19% Similarity=0.210 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999865421 12323 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 131 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~--~p~illLDEPt~~LD~~~~~~l~-~~l~~ 205 (269)
T cd03294 131 GVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAV--DPDILLMDEAFSALDPLIRREMQ-DELLR 205 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 34567788886542222 23455554 4899999999 999999999999 9999999999 88888
Q ss_pred HHhC-CCeEEEEEecccccccChHHH
Q 025795 126 LKSR-NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+.++ |.+++++ +|...+...+
T Consensus 206 ~~~~~g~tiii~----tH~~~~~~~~ 227 (269)
T cd03294 206 LQAELQKTIVFI----THDLDEALRL 227 (269)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHh
Confidence 8654 7777655 4555444444
No 84
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.6e-23 Score=182.15 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-------cccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-------VAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-------~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + +..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~ 111 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD 111 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC
Confidence 4789999999999999999999999999999999976531 12333 1 1236666653
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++++
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~ 186 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAM--DPDVIVLDEPMAYLDPRGQETLM-EILDRLHN 186 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH
Confidence 35667788886543332 24566654 4899999999 999999999999 9999999999 99999876
Q ss_pred CCCeEEEEEecccccccChHHHHH
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+|.+++++ +|.......+++
T Consensus 187 ~g~tili~----tH~~~~~~~~~d 206 (274)
T PRK13647 187 QGKTVIVA----THDVDLAAEWAD 206 (274)
T ss_pred CCCEEEEE----eCCHHHHHHhCC
Confidence 68887665 465554444444
No 85
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.7e-23 Score=182.50 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 4789999999999999999999999999999999876421 11222 22456666443
Q ss_pred ----------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHH
Q 025795 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (248)
Q Consensus 59 ----------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~ 113 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~ 187 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVT--QPEILMLDEPAAGLNPK 187 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHH
Confidence 23445667775432222 23455554 4899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHH
Q 025795 114 THVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 114 ~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
++..+. +++.+++++ |.+++++ +|...+...++
T Consensus 188 ~~~~l~-~~L~~~~~~~~~tii~~----sH~~~~~~~~~ 221 (255)
T PRK11300 188 ETKELD-ELIAELRNEHNVTVLLI----EHDMKLVMGIS 221 (255)
T ss_pred HHHHHH-HHHHHHHhhcCCEEEEE----eCCHHHHHHhC
Confidence 999998 888888764 7787665 45554444443
No 86
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.89 E-value=1.8e-22 Score=172.71 Aligned_cols=141 Identities=15% Similarity=0.207 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---CCCCC-------CcccChhhhhh------------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~------------~~ 60 (248)
-+++|+||||||||||+++|+|.++|++|+|.++|.+... ..+.| .+..++++++. +.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 106 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID 106 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHH
Confidence 4789999999999999999999999999999998865421 11222 23467777764 45
Q ss_pred HHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795 61 DVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (248)
Q Consensus 61 ~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (248)
++++.+|+.+..... ...+++++ ++.+|++++. +|+++|+|||++ ||+.++..+. ++++++.+.|.+++++
T Consensus 107 ~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~~~~tiii~- 180 (223)
T TIGR03740 107 EVLNIVDLTNTGKKK--AKQFSLGMKQRLGIAIALLN--HPKLLILDEPTNGLDPIGIQELR-ELIRSFPEQGITVILS- 180 (223)
T ss_pred HHHHHcCCcHHHhhh--HhhCCHHHHHHHHHHHHHhc--CCCEEEECCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE-
Confidence 677888887543222 34455554 3899999999 999999999999 9999999998 8888887667777655
Q ss_pred ecccccccChHHHHH
Q 025795 138 LLDSQFITDVTKFIS 152 (248)
Q Consensus 138 l~d~~~~~d~~~~~s 152 (248)
+|...+...+++
T Consensus 181 ---sH~~~~~~~~~d 192 (223)
T TIGR03740 181 ---SHILSEVQQLAD 192 (223)
T ss_pred ---cCCHHHHHHhcC
Confidence 455544444433
No 87
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.89 E-value=2.2e-22 Score=169.41 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQR 106 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHH
Confidence 4689999999999999999999999999999999876421 11222 23467777653
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++++||||+ ||+.++..+. ++++++.++|.+++
T Consensus 107 ~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii 181 (198)
T TIGR01189 107 TIEDALAAVGLTGFEDLP--AAQLSAGQQRRLALARLWLS--RAPLWILDEPTTALDKAGVALLA-GLLRAHLARGGIVL 181 (198)
T ss_pred HHHHHHHHcCCHHHhcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEE
Confidence 45567778886543222 24455554 3899999999 999999999999 9999999988 88888866677776
Q ss_pred EE
Q 025795 135 AV 136 (248)
Q Consensus 135 ~v 136 (248)
++
T Consensus 182 ~~ 183 (198)
T TIGR01189 182 LT 183 (198)
T ss_pred EE
Confidence 65
No 88
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.89 E-value=1.9e-22 Score=170.25 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...+.| .+..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 468999999999999999999999999999999987631 112332 23457776553
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+++..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 179 (206)
T TIGR03608 105 KLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILK--DPPLILADEPTGSLDPKNRDEVL-DLLLE 179 (206)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcCCCCHHHHHHHH-HHHHH
Confidence 35677888886543222 23455554 3899999999 999999999999 9999999999 88988
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+.|.+++++
T Consensus 180 ~~~~~~tii~~ 190 (206)
T TIGR03608 180 LNDEGKTIIIV 190 (206)
T ss_pred HHhcCCEEEEE
Confidence 87667777665
No 89
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.89 E-value=2.1e-22 Score=173.89 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~ 107 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHH
Confidence 4689999999999999999999999999999999875421 12222 23456666553
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-C
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-R 129 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~ 129 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.+ .
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLH--RPALLLLDEPTVGLDPASRAAIV-AHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCccCCCHHHHHHHH-HHHHHHHHhC
Confidence 35667788886543222 23455554 4899999999 999999999999 9999999999 88888864 5
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
|.+++++
T Consensus 183 ~~tiii~ 189 (236)
T TIGR03864 183 GLSVLWA 189 (236)
T ss_pred CCEEEEE
Confidence 7777655
No 90
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.89 E-value=1.1e-22 Score=187.09 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... +...+.|.+++++++.
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 120 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE 120 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHH
Confidence 3689999999999999999999999999999999976521 2223355678888774
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.+..... ...+++++ +++|||+|+. +|+++|+|||++ ||..++..+. +.++++.+ .|
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~--~P~llLLDEP~s~LD~~~r~~l~-~~L~~l~~~~g 195 (375)
T PRK09452 121 ITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVN--KPKVLLLDESLSALDYKLRKQMQ-NELKALQRKLG 195 (375)
T ss_pred HHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcC
Confidence 35667788887654433 24566654 4999999999 999999999999 9999999988 88888865 48
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.++++|
T Consensus 196 ~tiI~v 201 (375)
T PRK09452 196 ITFVFV 201 (375)
T ss_pred CEEEEE
Confidence 887766
No 91
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.89 E-value=8.2e-23 Score=173.81 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 4789999999999999999999999999999999876421 11222 23456666553
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.++ +
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~ 179 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVR--PNPILLLDEPFSALDPLLREEML-ALVKQLCSERQ 179 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34567778886432222 23455554 4899999999 999999999999 9999999999 888888654 7
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 180 ~tii~v 185 (213)
T TIGR01277 180 RTLLMV 185 (213)
T ss_pred CEEEEE
Confidence 777666
No 92
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.3e-23 Score=188.42 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------------------------------CCCCCC-C--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------------------------AENFDY-P-- 48 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-------------------------------~~~~~y-~-- 48 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. ...++| +
T Consensus 34 e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 368999999999999999999999999999999865431 011233 1
Q ss_pred -----cccChhhhhh----------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEE
Q 025795 49 -----VAMDIRELIS----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVF 104 (248)
Q Consensus 49 -----~~~~i~e~i~----------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lil 104 (248)
...++++++. +.++++.+||. +..... ...+++++ +++||++++. +|+++|+
T Consensus 114 ~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqrvalA~aL~~--~P~lLlL 189 (305)
T PRK13651 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS--PFELSGGQKRRVALAGILAM--EPDFLVF 189 (305)
T ss_pred cccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEE
Confidence 1236666653 56778889996 332222 34466654 4899999999 9999999
Q ss_pred eCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
||||+ ||+.++..+. ++++++.+.|.+++++ +|.......+++
T Consensus 190 DEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiiv----tHd~~~~~~~ad 233 (305)
T PRK13651 190 DEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILV----THDLDNVLEWTK 233 (305)
T ss_pred eCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eeCHHHHHHhCC
Confidence 99999 9999999999 9999987678888766 455544444444
No 93
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=1.3e-22 Score=176.42 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCC-------CcccChhhhhh--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDY-------PVAMDIRELIS-- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y-------~~~~~i~e~i~-- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999998865321 12222 23456766652
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~Gq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~- 184 (250)
T PRK11264 110 PVIVKGEPKEEATARARELLAKVGLAGKETSY--PRRLSGGQQQRVAIARALAM--RPEVILFDEPTSALDPELVGEVL- 184 (250)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC--hhhCChHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 34567777886532222 24455554 3899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.++|.+++++ +|...+...+
T Consensus 185 ~~l~~~~~~~~tvi~~----tH~~~~~~~~ 210 (250)
T PRK11264 185 NTIRQLAQEKRTMVIV----THEMSFARDV 210 (250)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence 8899887667777655 4554433333
No 94
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.1e-23 Score=182.51 Aligned_cols=143 Identities=14% Similarity=0.161 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 34 e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 113 (287)
T PRK13641 34 SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN 113 (287)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHH
Confidence 4689999999999999999999999999999999976421 12333 11 246666653
Q ss_pred -----------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 -----------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+|+. ...... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~--~p~lLlLDEPt~gLD~~~~~~l~-~~l 188 (287)
T PRK13641 114 FGFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAY--EPEILCLDEPAAGLDPEGRKEMM-QLF 188 (287)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHH
Confidence 45667788886 332222 23455554 4899999999 999999999999 9999999988 889
Q ss_pred HHHHhCCCeEEEEEecccccccChHHHHHHH
Q 025795 124 DHLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
+++.+.|.+++++ +|...+...+++.+
T Consensus 189 ~~l~~~g~tvliv----sH~~~~~~~~~d~v 215 (287)
T PRK13641 189 KDYQKAGHTVILV----THNMDDVAEYADDV 215 (287)
T ss_pred HHHHhCCCEEEEE----eCCHHHHHHhCCEE
Confidence 9987668888665 56665555555533
No 95
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=1.3e-22 Score=175.52 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|.++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 29 ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 4689999999999999999999999999999999976431 12333 23456665542
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+|+.+..... ...++++. ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~--~p~~lllDEPt~~LD~~~~~~l~- 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQ--DPKLLLLDEPVAGMTDEETEKTA- 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHHH-
Confidence 34567778887543222 23455553 4899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++.+ +.+++++ +|...+...+++
T Consensus 184 ~~l~~~~~-~~tii~~----sH~~~~~~~~~d 210 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVV----EHDMEFVRSIAD 210 (242)
T ss_pred HHHHHHhc-CCEEEEE----ECCHHHHHHhCC
Confidence 89998865 6676655 455544444433
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.3e-23 Score=182.04 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~-------~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..++| + ...++++++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 113 (287)
T PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG 113 (287)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC
Confidence 3689999999999999999999999999999999976531 12333 1 1346777663
Q ss_pred ---------HHHHHHHhCCC--CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLG--PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 ---------~~~~m~~~~L~--~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
+.++++.+|+. +..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~--~~~LSgGq~qrv~iAraL~~--~P~llllDEPt~gLD~~~~~~l~-~~l~ 188 (287)
T PRK13637 114 LSEEEIENRVKRAMNIVGLDYEDYKDKS--PFELSGGQKRRVAIAGVVAM--EPKILILDEPTAGLDPKGRDEIL-NKIK 188 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCchhhccCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 45778888996 222222 23455554 4899999999 999999999999 9999999999 9999
Q ss_pred HHHhC-CCeEEEEEecccccccChHHHHH
Q 025795 125 HLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 125 ~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++.++ |.+++++ +|...+...+++
T Consensus 189 ~l~~~~g~tvi~v----tHd~~~~~~~~d 213 (287)
T PRK13637 189 ELHKEYNMTIILV----SHSMEDVAKLAD 213 (287)
T ss_pred HHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 98764 8888766 455544444444
No 97
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=176.06 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDL 109 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccccc
Confidence 4789999999999999999999999999999999876421 12222 22345655542
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+.++++.+++....... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 184 (241)
T PRK10895 110 SAEQREDRANELMEEFHIEHLRDSM--GQSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPISVIDIK-RIIEHLR 184 (241)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhcc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 45566777776432222 23455554 3899999999 999999999999 9999999988 8888887
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
++|.+++++
T Consensus 185 ~~g~tiii~ 193 (241)
T PRK10895 185 DSGLGVLIT 193 (241)
T ss_pred hcCCEEEEE
Confidence 668787665
No 98
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.3e-23 Score=187.05 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++.+++.
T Consensus 33 e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~ 112 (288)
T PRK13643 33 SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQN 112 (288)
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHH
Confidence 3689999999999999999999999999999999976521 11222 11 236666553
Q ss_pred -----------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 -----------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+++.+ ..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGqkqrvaiA~aL~~--~p~illLDEPt~gLD~~~~~~l~-~~l 187 (288)
T PRK13643 113 FGIPKEKAEKIAAEKLEMVGLADEFWEKS--PFELSGGQMRRVAIAGILAM--EPEVLVLDEPTAGLDPKARIEMM-QLF 187 (288)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhccCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHH
Confidence 456677788853 22222 23455554 4899999999 999999999999 9999999999 889
Q ss_pred HHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++|.+++++ +|...+...+++
T Consensus 188 ~~l~~~g~til~v----tHd~~~~~~~~d 212 (288)
T PRK13643 188 ESIHQSGQTVVLV----THLMDDVADYAD 212 (288)
T ss_pred HHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 9987678888766 455544444444
No 99
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=182.57 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc---CCCC-----CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL---DPAA-----ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~---d~~~-----~~~~y-------~~~~~i~e~i~--------- 58 (248)
-.++++|||||||||++|+|+|+..|+.|+|.++|. |..+ ..++| .+.+||.++|.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~ 108 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER 108 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccC
Confidence 358999999999999999999999999999999998 5433 33333 55788888885
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.++|+..+.+.. ..+++++ +++|||+++. +|++|+||||+. ||...+.++- .-++++
T Consensus 109 p~~~~~r~rv~elL~lvqL~~la~ryP--~QLSGGQrQRVALARALA~--eP~vLLLDEPf~ALDa~vr~~lr-~wLr~~ 183 (345)
T COG1118 109 PSEAEIRARVEELLRLVQLEGLADRYP--AQLSGGQRQRVALARALAV--EPKVLLLDEPFGALDAKVRKELR-RWLRKL 183 (345)
T ss_pred CChhhHHHHHHHHHHHhcccchhhcCc--hhcChHHHHHHHHHHHhhc--CCCeEeecCCchhhhHHHHHHHH-HHHHHH
Confidence 788899999988765543 3466654 4999999999 999999999998 9999998877 777777
Q ss_pred HhC-CCeEEEEEecccccccChHHHHHHHHH
Q 025795 127 KSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
.++ |.++++| +|...+..++++.++.
T Consensus 184 ~~~~~~ttvfV----THD~eea~~ladrvvv 210 (345)
T COG1118 184 HDRLGVTTVFV----THDQEEALELADRVVV 210 (345)
T ss_pred HHhhCceEEEE----eCCHHHHHhhcceEEE
Confidence 654 8888777 5777777777665443
No 100
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.89 E-value=1.4e-22 Score=178.45 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 4689999999999999999999999999999999865421 12222 23457777653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 188 (269)
T PRK11831 114 QLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLV-KLISE 188 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHH
Confidence 22356778886533222 34566654 3899999999 999999999999 9999999999 88898
Q ss_pred HHhC-CCeEEEEEecccccccChHHHHH
Q 025795 126 LKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.++ |.+++++ +|...+...+++
T Consensus 189 ~~~~~g~tiiiv----sH~~~~~~~~~d 212 (269)
T PRK11831 189 LNSALGVTCVVV----SHDVPEVLSIAD 212 (269)
T ss_pred HHHhcCcEEEEE----ecCHHHHHHhhC
Confidence 8654 7777665 455443344433
No 101
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-22 Score=187.37 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999876421 12333 33567877764
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 135 ~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~--~P~iLLLDEPts~LD~~~r~~l~-~~L~~ 209 (400)
T PRK10070 135 GINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAI--NPDILLMDEAFSALDPLIRTEMQ-DELVK 209 (400)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHH
Confidence 34577888887643332 23466654 4899999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCeEEEEEecccccccChHHHHH
Q 025795 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.+ .+.+++++ +|...+..++++
T Consensus 210 l~~~~g~TIIiv----THd~~~~~~~~D 233 (400)
T PRK10070 210 LQAKHQRTIVFI----SHDLDEAMRIGD 233 (400)
T ss_pred HHHHCCCeEEEE----ECCHHHHHHhCC
Confidence 864 47787666 344443344433
No 102
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=1e-22 Score=177.39 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~~~~~y~~~~~i~e~i~------------~~~~m~~~~L 68 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|...+ .+........++++++. ..++++.+++
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999875322 12222233457777653 3457777887
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccc
Q 025795 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFI 144 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~ 144 (248)
....... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .+.+++++ +|..
T Consensus 106 ~~~~~~~--~~~LSgGe~qrv~iaraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiv----sHd~ 176 (246)
T cd03237 106 EQILDRE--VPELSGGELQRVAIAACLSK--DADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNEKTAFVV----EHDI 176 (246)
T ss_pred HHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE----eCCH
Confidence 6432222 34466554 4899999999 999999999999 9999999998 88888865 47777666 4555
Q ss_pred cChHHHHH
Q 025795 145 TDVTKFIS 152 (248)
Q Consensus 145 ~d~~~~~s 152 (248)
.....+++
T Consensus 177 ~~~~~~~d 184 (246)
T cd03237 177 IMIDYLAD 184 (246)
T ss_pred HHHHHhCC
Confidence 44444433
No 103
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=5.3e-22 Score=166.76 Aligned_cols=129 Identities=13% Similarity=0.046 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCCCcccChhhhhh-----------HHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDYPVAMDIRELIS-----------LED 61 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y~~~~~i~e~i~-----------~~~ 61 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... +...+.+..++++++. +.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~ 106 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYA 106 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHH
Confidence 4789999999999999999999999999999999976421 1122234567877764 345
Q ss_pred HHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 62 VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 62 ~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++.+++.+..... ...+++++ ++.+|++++. +|+++|+|||++ +|+.++..+. ++++...+.+.+++++
T Consensus 107 ~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 179 (195)
T PRK13541 107 AIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIAC--QSDLWLLDEVETNLSKENRDLLN-NLIVMKANSGGIVLLS 179 (195)
T ss_pred HHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 56777876432222 23455544 3889999999 999999999999 9999998888 8887665567777665
No 104
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=185.56 Aligned_cols=129 Identities=15% Similarity=0.213 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----------~~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+.+++++++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 104 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKS 104 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhh
Confidence 478999999999999999999999999999999886542 112222 34568888774
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.++ |
T Consensus 105 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~llLLDEPts~LD~~~~~~l~-~~L~~l~~~~g 179 (352)
T PRK11144 105 MVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKRELL-PYLERLAREIN 179 (352)
T ss_pred hHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56788889997643332 23466554 4999999999 999999999999 9999999998 888888754 7
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 180 ~tii~v 185 (352)
T PRK11144 180 IPILYV 185 (352)
T ss_pred CeEEEE
Confidence 777665
No 105
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.88 E-value=1.3e-22 Score=185.48 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 4789999999999999999999999999999999876421 11222 33567877764
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++++.+++.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~l~ 178 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLS--SPRLLLMDEPLAALDDPRKYEIL-PYLERLH 178 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCCcCCCHHHHHHHH-HHHHHHH
Confidence 45678888887643333 24466654 4899999999 999999999999 9999999999 8888887
Q ss_pred hC-CCeEEEEEecccccccChHHHHH
Q 025795 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++ |.+++++ +|...+...+++
T Consensus 179 ~~~g~tiiiv----tH~~~~~~~~~d 200 (354)
T TIGR02142 179 AEFGIPILYV----SHSLQEVLRLAD 200 (354)
T ss_pred HhcCCEEEEE----ecCHHHHHHhCC
Confidence 64 7777665 454444444443
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.9e-22 Score=173.52 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-------------CCCCCC-------CcccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-------------AENFDY-------PVAMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-------------~~~~~y-------~~~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. ...+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 468999999999999999999999999999999987641 112333 22457776653
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEPt~~LD~~~~~~l~-~~ 183 (242)
T PRK11124 109 RVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SI 183 (242)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCHHHHHHHH-HH
Confidence 34567778886543222 23455554 4899999999 999999999999 9999999998 88
Q ss_pred HHHHHhCCCeEEEE
Q 025795 123 VDHLKSRNFNVCAV 136 (248)
Q Consensus 123 l~~l~~~~~~ii~v 136 (248)
++++++.|.+++++
T Consensus 184 l~~~~~~~~tii~~ 197 (242)
T PRK11124 184 IRELAETGITQVIV 197 (242)
T ss_pred HHHHHHcCCEEEEE
Confidence 99887667777655
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.88 E-value=1.8e-22 Score=172.84 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999999876421 12222 22456666652
Q ss_pred -------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 -------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 -------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+++. +..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (228)
T cd03257 112 HGKLSKKEARKEAVLLLLVGVGLPEEVLNRY--PHELSGGQRQRVAIARALAL--NPKLLIADEPTSALDVSVQAQIL-D 186 (228)
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCChhHhhCC--chhcCHHHHHHHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-H
Confidence 12455667774 221111 23455554 4899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhC-CCeEEEE
Q 025795 122 FVDHLKSR-NFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (248)
+++++.++ |.+++++
T Consensus 187 ~l~~~~~~~~~tii~~ 202 (228)
T cd03257 187 LLKKLQEELGLTLLFI 202 (228)
T ss_pred HHHHHHHHcCCEEEEE
Confidence 88888764 7777665
No 108
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=1.6e-22 Score=173.68 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRR 106 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcc
Confidence 4789999999999999999999999999999999865421 12333 23457776664
Q ss_pred ----HHHHHHHhC-CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025795 59 ----LEDVMEELG-LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (248)
Q Consensus 59 ----~~~~m~~~~-L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (248)
..++++.++ ++...... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus 107 ~~~~~~~~l~~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~ 181 (230)
T TIGR03410 107 SRKIPDEIYELFPVLKEMLGRR--GGDLSGGQQQQLAIARALVT--RPKLLLLDEPTEGIQPSIIKDIG-RVIRRLRAEG 181 (230)
T ss_pred hHHHHHHHHHHHHhHHHHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHHH-HHHHHHHHcC
Confidence 234455554 33221111 23455554 3899999999 999999999999 9999999999 888888764
Q ss_pred CCeEEEEEecccccccChHHH
Q 025795 130 NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+.+++++ +|...+...+
T Consensus 182 ~~tii~~----sH~~~~~~~~ 198 (230)
T TIGR03410 182 GMAILLV----EQYLDFAREL 198 (230)
T ss_pred CcEEEEE----eCCHHHHHHh
Confidence 7777665 4555433333
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-22 Score=176.39 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 108 (258)
T PRK13548 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSR 108 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCc
Confidence 4789999999999999999999999999999999875421 11222 23456776653
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHc------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+++.+..... ...+++++ +++||++++ . +|+++|+||||+ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 183 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDG--PPRWLLLDEPTSALDLAHQHHVL-RLA 183 (258)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCC--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 34567777886532222 23455554 489999999 5 899999999999 9999999999 888
Q ss_pred HHHH-hCCCeEEEEEecccccccChHHHHH
Q 025795 124 DHLK-SRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++. +.|.+++++ +|...+...+++
T Consensus 184 ~~~~~~~~~tiii~----sH~~~~~~~~~d 209 (258)
T PRK13548 184 RQLAHERGLAVIVV----LHDLNLAARYAD 209 (258)
T ss_pred HHHHHhcCCEEEEE----ECCHHHHHHhcC
Confidence 8887 567777665 455544444433
No 110
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.6e-22 Score=174.15 Aligned_cols=139 Identities=17% Similarity=0.249 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 105 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHH
Confidence 4789999999999999999999999999999999876421 11222 22346665543
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+ .|
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~~~-~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVR--EQPILLLDEPFSALDPALRQEML-TLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45567777776432222 23455554 3899999999 999999999999 9999999999 88888865 47
Q ss_pred CeEEEEEecccccccChHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+++++ +|...+...+
T Consensus 181 ~tiii~----sH~~~~~~~~ 196 (232)
T PRK10771 181 LTLLMV----SHSLEDAARI 196 (232)
T ss_pred CEEEEE----ECCHHHHHHh
Confidence 777665 4555433333
No 111
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.9e-23 Score=182.96 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-Cc-------ccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PV-------AMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~~-------~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++.+++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~ 107 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG 107 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999976421 12333 11 123444332
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 182 (271)
T PRK13638 108 VPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVL--QARYLLLDEPTAGLDPAGRTQMI-AIIRRI 182 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34567777876533222 23455554 4899999999 999999999999 9999999999 889988
Q ss_pred HhCCCeEEEEEecccccccChHHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++|.+++++ +|...+...+++
T Consensus 183 ~~~g~tii~v----tH~~~~~~~~~d 204 (271)
T PRK13638 183 VAQGNHVIIS----SHDIDLIYEISD 204 (271)
T ss_pred HHCCCEEEEE----eCCHHHHHHhCC
Confidence 7667777665 455544444433
No 112
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=6e-22 Score=167.97 Aligned_cols=129 Identities=21% Similarity=0.232 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-------CcccChhhhhh------------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS------------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~------------~ 59 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+.| .+..++++++. +
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 108 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDI 108 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHH
Confidence 4789999999999999999999999999999999876321 11222 23457776653 4
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++++++|.+++++
T Consensus 109 ~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 183 (207)
T PRK13539 109 AAALEAVGLAPLAHLP--FGYLSAGQKRRVALARLLVS--NRPIWILDEPTAALDAAAVALFA-ELIRAHLAQGGIVIAA 183 (207)
T ss_pred HHHHHHcCCHHHHcCC--hhhcCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 6678888886532222 23455543 4899999999 999999999999 9999999998 8888886668887665
No 113
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.88 E-value=4.3e-22 Score=172.19 Aligned_cols=139 Identities=18% Similarity=0.234 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC--------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY--------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y--------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+..++++++.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 127 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP 127 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCH
Confidence 4789999999999999999999999999999998865321 11222 23456666553
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLH--EPEILFLDEPTIGLDVVAQENIR-NFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc
Confidence 34566777776432222 23455554 3889999999 999999999999 9999999999 888888654
Q ss_pred -CCeEEEEEecccccccChHHH
Q 025795 130 -NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 130 -~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+.+++++ +|...+...+
T Consensus 203 ~~~tiiiv----sH~~~~~~~~ 220 (236)
T cd03267 203 RGTTVLLT----SHYMKDIEAL 220 (236)
T ss_pred CCCEEEEE----ecCHHHHHHh
Confidence 6777665 4554433333
No 114
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.1e-22 Score=178.15 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ....++++++.
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~ 110 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD 110 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC
Confidence 4789999999999999999999999999999999976532 11222 11346666653
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~--~p~llilDEPt~gLD~~~~~~l~-~~l~~l~~ 185 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAM--EPQVLVLDEPTAGLDPQGVKELI-DFLNDLPE 185 (277)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45667788887543333 23455554 4899999999 999999999999 9999999999 99999876
Q ss_pred C-CCeEEEEEecccccccChHHHHH
Q 025795 129 R-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 129 ~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+ |.+++++ +|...+..++++
T Consensus 186 ~~g~tvli~----tH~~~~~~~~~d 206 (277)
T PRK13652 186 TYGMTVIFS----THQLDLVPEMAD 206 (277)
T ss_pred hcCCEEEEE----ecCHHHHHHhCC
Confidence 4 7777655 455554444444
No 115
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.88 E-value=5.8e-22 Score=170.08 Aligned_cols=129 Identities=20% Similarity=0.230 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999865421 12332 23456666653
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 117 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 191 (228)
T PRK10584 117 GESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNG--RPDVLFADEPTGNLDRQTGDKIA-DLLFS 191 (228)
T ss_pred CCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 35567788886432222 23455554 4899999999 999999999999 9999999998 88888
Q ss_pred HHhC-CCeEEEE
Q 025795 126 LKSR-NFNVCAV 136 (248)
Q Consensus 126 l~~~-~~~ii~v 136 (248)
+.++ |.+++++
T Consensus 192 ~~~~~~~tii~~ 203 (228)
T PRK10584 192 LNREHGTTLILV 203 (228)
T ss_pred HHHhcCCEEEEE
Confidence 8654 7777665
No 116
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.9e-22 Score=183.60 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ++....+.+++.|++.
T Consensus 46 e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~ 125 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE 125 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999976421 2223355678888875
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
+.++++.+++.+..... ...+++++ +++||++++. +|+++|+|||++ ||...+..+. +.++++.+ .|
T Consensus 126 ~~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 200 (377)
T PRK11607 126 IASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAK--RPKLLLLDEPMGALDKKLRDRMQ-LEVVDILERVG 200 (377)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 45678888987654443 23466654 4999999999 999999999999 9999999988 66777654 57
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++++| +|...+...+++
T Consensus 201 ~tii~v----THd~~ea~~laD 218 (377)
T PRK11607 201 VTCVMV----THDQEEAMTMAG 218 (377)
T ss_pred CEEEEE----cCCHHHHHHhCC
Confidence 787666 455544444444
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.3e-23 Score=184.10 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~ 113 (286)
T PRK13646 34 KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKN 113 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHH
Confidence 4689999999999999999999999999999999976521 12333 11 126666553
Q ss_pred -----------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 -----------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+|+. +..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~--~p~illlDEPt~~LD~~~~~~l~-~~l 188 (286)
T PRK13646 114 FKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAM--NPDIIVLDEPTAGLDPQSKRQVM-RLL 188 (286)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 45677788885 322221 23455554 4899999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++.+ .|.+++++ +|...+...+++
T Consensus 189 ~~l~~~~g~tvl~v----tH~~~~~~~~~d 214 (286)
T PRK13646 189 KSLQTDENKTIILV----SHDMNEVARYAD 214 (286)
T ss_pred HHHHHhCCCEEEEE----ecCHHHHHHhCC
Confidence 99865 48888766 455544444433
No 118
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.88 E-value=2.9e-22 Score=184.39 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc----CCCC-----------CCCC-------CCcccChhhhhh--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA-----------ENFD-------YPVAMDIRELIS-- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~----d~~~-----------~~~~-------y~~~~~i~e~i~-- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|. ++.. ..+. +.+..++++++.
T Consensus 51 ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 51 EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 468999999999999999999999999999999985 3210 1222 244567877764
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. +
T Consensus 131 ~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~--~P~ILLlDEPts~LD~~~r~~l~-~ 205 (382)
T TIGR03415 131 LEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAM--DADILLMDEPFSALDPLIRTQLQ-D 205 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-H
Confidence 45678888987654333 23466654 4899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhC-CCeEEEEEecccccccChHHHHHH
Q 025795 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFISG 153 (248)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~ 153 (248)
.+.+++++ +.+++++ +|...+..++++.
T Consensus 206 ~L~~l~~~~~~TII~i----THdl~e~~~l~Dr 234 (382)
T TIGR03415 206 ELLELQAKLNKTIIFV----SHDLDEALKIGNR 234 (382)
T ss_pred HHHHHHHhcCCEEEEE----eCCHHHHHHhCCE
Confidence 88888764 7888766 4555444444443
No 119
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=174.36 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 111 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD 111 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh
Confidence 4789999999999999999999999999999999976421 12222 22356766653
Q ss_pred -----HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 59 -----LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 59 -----~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
++++++.+ ++.+.... ....+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.++
T Consensus 112 ~~~~~~~~~l~~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~ 186 (237)
T PRK11614 112 QFQERIKWVYELFPRLHERRIQ--RAGTMSGGEQQMLAIGRALMS--QPRLLLLDEPSLGLAPIIIQQIF-DTIEQLREQ 186 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--chhhCCHHHHHHHHHHHHHHh--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHC
Confidence 23334444 24322111 123455554 3899999999 999999999999 9999999998 888888766
Q ss_pred CCeEEEEEecccccccChHHHH
Q 025795 130 NFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
|.+++++ +|...+..+++
T Consensus 187 ~~tiii~----sH~~~~~~~~~ 204 (237)
T PRK11614 187 GMTIFLV----EQNANQALKLA 204 (237)
T ss_pred CCEEEEE----eCcHHHHHhhC
Confidence 8787655 45554444443
No 120
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.7e-22 Score=179.97 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-Cc-------ccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-PV-------AMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~~-------~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~ 113 (290)
T PRK13634 34 SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMN 113 (290)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976521 12333 11 246666653
Q ss_pred -----------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 -----------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
++++++.++|.+ ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~--~P~llllDEPt~~LD~~~~~~l~-~~L 188 (290)
T PRK13634 114 FGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAM--EPEVLVLDEPTAGLDPKGRKEMM-EMF 188 (290)
T ss_pred cCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHH
Confidence 456778888863 22222 23455554 4899999999 999999999999 9999999999 889
Q ss_pred HHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++.+ .|.+++++ +|...+...+++
T Consensus 189 ~~l~~~~g~tviii----tHd~~~~~~~~d 214 (290)
T PRK13634 189 YKLHKEKGLTTVLV----THSMEDAARYAD 214 (290)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 99865 48888766 466555455544
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=178.50 Aligned_cols=141 Identities=15% Similarity=0.168 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C-------cccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P-------VAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~-------~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + ...++++++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~ 113 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN 113 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHH
Confidence 4789999999999999999999999999999999865421 12333 1 1236666653
Q ss_pred -----------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 -----------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
++++++.+++.+ ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 188 (280)
T PRK13649 114 FGVSQEEAEALAREKLALVGISESLFEKN--PFELSGGQMRRVAIAGILAM--EPKILVLDEPTAGLDPKGRKELM-TLF 188 (280)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 345567778863 21111 23455554 4899999999 999999999999 9999999998 888
Q ss_pred HHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 124 DHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++++.+.+++++ +|...+...+++
T Consensus 189 ~~~~~~~~tiiiv----sH~~~~~~~~~d 213 (280)
T PRK13649 189 KKLHQSGMTIVLV----THLMDDVANYAD 213 (280)
T ss_pred HHHHHCCCEEEEE----eccHHHHHHhCC
Confidence 8887667787665 455444444433
No 122
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.88 E-value=2.9e-22 Score=190.75 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 31 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 31 RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 4789999999999999999999999999999999866421 12333 23456655432
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 -----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
+.++++.+|+++..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSF--ESKVIIMDEPTDALTDTETESLF-RVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcCCCCHHHHHHHH-HHHH
Confidence 45678888887654332 34566664 4899999999 999999999999 9999999999 8999
Q ss_pred HHHhCCCeEEEE
Q 025795 125 HLKSRNFNVCAV 136 (248)
Q Consensus 125 ~l~~~~~~ii~v 136 (248)
++++.|.+++++
T Consensus 186 ~l~~~~~tvii~ 197 (501)
T PRK10762 186 ELKSQGRGIVYI 197 (501)
T ss_pred HHHHCCCEEEEE
Confidence 987667777665
No 123
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=6.8e-22 Score=169.54 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCC-C--------cccChhhhh--------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDY-P--------VAMDIRELI-------------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y-~--------~~~~i~e~i-------------- 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| + ...++++++
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 86 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRP 86 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccCC
Confidence 4789999999999999999999999999999999976521 11222 1 123454432
Q ss_pred ------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 58 ------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 58 ------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
.+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 87 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~ 161 (223)
T TIGR03771 87 CVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALAT--RPSVLLLDEPFTGLDMPTQELLT-ELFIELAG 161 (223)
T ss_pred cHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 145677888887643332 23455554 4899999999 999999999999 9999999999 88888876
Q ss_pred CCCeEEEEEecccccccChHHHHH
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+|.+++++ +|...+..++++
T Consensus 162 ~~~tvii~----sH~~~~~~~~~d 181 (223)
T TIGR03771 162 AGTAILMT----THDLAQAMATCD 181 (223)
T ss_pred cCCEEEEE----eCCHHHHHHhCC
Confidence 68887666 455544444433
No 124
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.3e-22 Score=177.13 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (279)
T PRK13650 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP 113 (279)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC
Confidence 4689999999999999999999999999999999977532 12233 12346666653
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.+++.++ ++++++.+
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKERE--PARLSGGQKQRVAIAGAVAM--RPKIIILDEATSMLDPEGRLELI-KTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHH
Confidence 46678888887543322 23455543 4899999999 999999999999 9999999999 98999876
Q ss_pred C-CCeEEEE
Q 025795 129 R-NFNVCAV 136 (248)
Q Consensus 129 ~-~~~ii~v 136 (248)
+ |.+++++
T Consensus 189 ~~g~tiliv 197 (279)
T PRK13650 189 DYQMTVISI 197 (279)
T ss_pred hcCCEEEEE
Confidence 4 8888766
No 125
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=3e-22 Score=184.99 Aligned_cols=145 Identities=13% Similarity=0.191 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---------------CCCCCCCcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------------AENFDYPVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~---------------~~~~~y~~~~~i~e~i~--------- 58 (248)
-+++++|.||+|||||+++|.|+++|++|+|.++|+... .|++...+.+|+.|++-
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 479999999999999999999999999999999997542 26777788889988874
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++++++|+.-+......--....++++.|-++|.. +|++|||||||+ |-|....+++ ++++.++
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr--~a~iLILDEPTaVLTP~E~~~lf-~~l~~l~ 187 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR--GARLLILDEPTAVLTPQEADELF-EILRRLA 187 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHH
Confidence 7888999998754333322112334566999999999 999999999999 9999999999 9999999
Q ss_pred hCCCeEEEEEecccccccChHHHHHHH
Q 025795 128 SRNFNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
+.|++|++| +|-+.+...+++.+
T Consensus 188 ~~G~tIi~I----THKL~Ev~~iaDrv 210 (501)
T COG3845 188 AEGKTIIFI----THKLKEVMAIADRV 210 (501)
T ss_pred HCCCEEEEE----eccHHHHHHhhCee
Confidence 999999877 56666666655533
No 126
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4e-23 Score=186.45 Aligned_cols=141 Identities=17% Similarity=0.167 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------------CCCCC-Cc-------cc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------------ENFDY-PV-------AM 51 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------------~~~~y-~~-------~~ 51 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..
T Consensus 53 e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~ 132 (320)
T PRK13631 53 KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccc
Confidence 4789999999999999999999999999999999865321 11222 11 22
Q ss_pred Chhhhhh----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795 52 DIRELIS----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (248)
Q Consensus 52 ~i~e~i~----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD 111 (248)
++++++. +.++++.+|++. ..... ...+++++ +++||++++. +|+++|+||||+ ||
T Consensus 133 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGqkqRvaiAraL~~--~p~iLLLDEPtsgLD 208 (320)
T PRK13631 133 TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS--PFGLSGGQKRRVAIAGILAI--QPEILIFDEPTAGLD 208 (320)
T ss_pred hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCccCCC
Confidence 6666552 456778888862 22221 23455554 4999999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 112 LFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.++..+. ++++++.++|.+++++ +|.......+++
T Consensus 209 ~~~~~~l~-~~L~~l~~~g~Tiiiv----tHd~~~~~~~ad 244 (320)
T PRK13631 209 PKGEHEMM-QLILDAKANNKTVFVI----THTMEHVLEVAD 244 (320)
T ss_pred HHHHHHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 99999999 8898887668887766 455544444443
No 127
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.4e-22 Score=177.65 Aligned_cols=141 Identities=14% Similarity=0.189 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-C-------cccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-P-------VAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~-------~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.+... ..+.| + ...++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~ 108 (275)
T PRK13639 29 EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG 108 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999976421 12233 1 1236666553
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 109 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l 183 (275)
T PRK13639 109 LSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAM--KPEIIVLDEPTSGLDPMGASQIM-KLLYDL 183 (275)
T ss_pred CCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHH
Confidence 44677788886543333 23455554 3899999999 999999999999 9999999999 888988
Q ss_pred HhCCCeEEEEEecccccccChHHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++|.+++++ +|...+...+++
T Consensus 184 ~~~~~til~v----tH~~~~~~~~~d 205 (275)
T PRK13639 184 NKEGITIIIS----THDVDLVPVYAD 205 (275)
T ss_pred HHCCCEEEEE----ecCHHHHHHhCC
Confidence 7668887766 455544444444
No 128
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.1e-23 Score=172.40 Aligned_cols=141 Identities=16% Similarity=0.258 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~------~~~i~e~i~--------- 58 (248)
-++|++||||+||||.+.++.|+.+|++|+|.+++.|... -.++| +| .++|+|++.
T Consensus 31 EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d 110 (243)
T COG1137 31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKD 110 (243)
T ss_pred cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcc
Confidence 4799999999999999999999999999999999998743 34566 33 567787774
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+++.++++++.+..... ...++++- ++.|||+|+. +|++++||||++ +||.+..++. ++++.|
T Consensus 111 ~~~~~~~~~l~~LL~ef~i~hlr~~~--a~sLSGGERRR~EIARaLa~--~P~fiLLDEPFAGVDPiaV~dIq-~iI~~L 185 (243)
T COG1137 111 LKKAERKEELDALLEEFHITHLRDSK--AYSLSGGERRRVEIARALAA--NPKFILLDEPFAGVDPIAVIDIQ-RIIKHL 185 (243)
T ss_pred hhHHHHHHHHHHHHHHhchHHHhcCc--ccccccchHHHHHHHHHHhc--CCCEEEecCCccCCCchhHHHHH-HHHHHH
Confidence 55788888887654433 23455543 4999999999 999999999999 9999999988 999999
Q ss_pred HhCCCeEEEEEecccccccChHHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+..|..++++ .|...+--.+|+
T Consensus 186 ~~rgiGvLIT----DHNVREtL~i~d 207 (243)
T COG1137 186 KDRGIGVLIT----DHNVRETLDICD 207 (243)
T ss_pred HhCCceEEEc----cccHHHHHhhhh
Confidence 9889888544 566665555544
No 129
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.88 E-value=2.7e-22 Score=175.33 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--------------------~~~~~y-------~~~~~i~e 55 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. .+.+.| .+..++++
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 478999999999999999999999999999999986542 112333 22357777
Q ss_pred hhh-----------------HHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHh
Q 025795 56 LIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (248)
Q Consensus 56 ~i~-----------------~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~ 114 (248)
++. +.++++.+|+.... ... ...+++++ ++.||++++. +|+++|+||||+ ||+.+
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~ 187 (257)
T PRK10619 112 NVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPEVLLFDEPTSALDPEL 187 (257)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHH
Confidence 753 34667888886531 111 23455554 4899999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEE
Q 025795 115 HVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 115 ~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+..+. ++++++++.|.+++++
T Consensus 188 ~~~l~-~~l~~l~~~g~tiiiv 208 (257)
T PRK10619 188 VGEVL-RIMQQLAEEGKTMVVV 208 (257)
T ss_pred HHHHH-HHHHHHHhcCCEEEEE
Confidence 99999 8999987668888766
No 130
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.88 E-value=3.4e-22 Score=175.87 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---------CcccChhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---------PVAMDIRELI--------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---------~~~~~i~e~i--------- 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++
T Consensus 40 e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 119 (267)
T PRK15112 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD 119 (267)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999999876431 11222 1122333332
Q ss_pred --------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 58 --------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
.+.++++.+|+.+...... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 195 (267)
T PRK15112 120 LEPEQREKQIIETLRQVGLLPDHASYY-PHMLAPGQKQRLGLARALIL--RPKVIIADEALASLDMSMRSQLI-NLMLEL 195 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCChHHHhcC-chhcCHHHHHHHHHHHHHHh--CCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 1456788888853321111 23455554 3899999999 999999999999 9999999988 888888
Q ss_pred HhC-CCeEEEEEecccccccChHHH
Q 025795 127 KSR-NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.++ |.+++++ +|...+...+
T Consensus 196 ~~~~g~tviiv----sH~~~~~~~~ 216 (267)
T PRK15112 196 QEKQGISYIYV----TQHLGMMKHI 216 (267)
T ss_pred HHHcCcEEEEE----eCCHHHHHHh
Confidence 754 7777655 4555444443
No 131
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.88 E-value=4.1e-22 Score=180.62 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCC---------CCcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD---------YPVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~---------y~~~~~i~e~i~----- 58 (248)
-+++|+|+||||||||+++|+|+++|++|+|.++|.+... ..+. +.+.+++.+++.
T Consensus 48 e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 48 ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999977531 1222 233456766642
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+++.+.....+. ..+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD~~~~~~i~-~l 203 (331)
T PRK15079 128 YHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-HEFSGGQCQRIGIARALIL--EPKLIICDEPVSALDVSIQAQVV-NL 203 (331)
T ss_pred hccCCCHHHHHHHHHHHHHHcCCChHHhcCCc-ccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 4567888888543222222 3466654 4899999999 999999999999 9999999999 99
Q ss_pred HHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++ .|.++++| +|.+.....+++
T Consensus 204 L~~l~~~~~~til~i----THdl~~~~~~~d 230 (331)
T PRK15079 204 LQQLQREMGLSLIFI----AHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence 999876 48888766 465554444443
No 132
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.88 E-value=3.6e-22 Score=171.87 Aligned_cols=139 Identities=14% Similarity=0.194 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~y---------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| .+.+++.+++.
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~ 92 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSL 92 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHc
Confidence 47899999999999999999999999 89999999976421 12222 22345444321
Q ss_pred ----------HHHHHHHhCCCC---CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGP---NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 ----------~~~~m~~~~L~~---~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+++.. .... ....+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 93 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~~LS~G~~qrv~laral~~--~p~vllLDEPt~~LD~~~~~~l~-~~ 167 (230)
T TIGR02770 93 GKLSKQARALILEALEAVGLPDPEEVLKK--YPFQLSGGMLQRVMIALALLL--EPPFLIADEPTTDLDVVNQARVL-KL 167 (230)
T ss_pred CccHHHHHHHHHHHHHHcCCCchHHHHhC--ChhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-HH
Confidence 456677788862 1111 123455554 4899999999 999999999999 9999999998 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccChHHH
Q 025795 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++.++ +.+++++ +|...+...+
T Consensus 168 l~~~~~~~~~tiii~----sH~~~~~~~~ 192 (230)
T TIGR02770 168 LRELRQLFGTGILLI----THDLGVVARI 192 (230)
T ss_pred HHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence 8888653 7777655 4555444443
No 133
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.9e-22 Score=176.12 Aligned_cols=141 Identities=26% Similarity=0.400 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 4789999999999999999999999999999999865421 11222 22345555442
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.+++.+. +++++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQ--DSRCLLLDEPTSALDIAHQVDVL-ALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34566777775432222 23455554 4899999999 999999999999 9999999999 88888
Q ss_pred HHhC-CCeEEEEEecccccccChHHHHH
Q 025795 126 LKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.+. |.+++++ +|.......+++
T Consensus 193 l~~~~~~tiii~----sH~~~~i~~~~d 216 (265)
T PRK10575 193 LSQERGLTVIAV----LHDINMAARYCD 216 (265)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 8654 7777655 455544444433
No 134
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=5e-22 Score=171.81 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|++ +|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~ 106 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR 106 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh
Confidence 478999999999999999999995 7999999999876421 11233 12334444331
Q ss_pred ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++.+ ...... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l 183 (243)
T TIGR01978 107 SARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV-NEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDALKIV 183 (243)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhccccc-ccCcCHHHHHHHHHHHHHhc--CCCEEEecCCcccCCHHHHHHH
Confidence 345666777763 222211 11255554 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025795 119 LRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (248)
. ++++++.++|.+++++
T Consensus 184 ~-~~l~~~~~~~~tvi~v 200 (243)
T TIGR01978 184 A-EGINRLREPDRSFLII 200 (243)
T ss_pred H-HHHHHHHHCCcEEEEE
Confidence 9 9999987667777665
No 135
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.88 E-value=2.8e-22 Score=181.32 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=102.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCC-------CCcccChhhhhh----------------
Q 025795 7 VIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFD-------YPVAMDIRELIS---------------- 58 (248)
Q Consensus 7 iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~-------y~~~~~i~e~i~---------------- 58 (248)
|+||||||||||+++|+|+++|++|+|.++|.+... ..+. +.+.+++++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999999999999876421 1222 234567777764
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVC 134 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii 134 (248)
++++++.+++.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.++ |.+++
T Consensus 81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~--~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tii 155 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVF--KPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEE
Confidence 35677888887654333 24566654 4999999999 999999999999 9999999988 888888654 78876
Q ss_pred EEEecccccccChHHHHH
Q 025795 135 AVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s 152 (248)
++ +|...+...+++
T Consensus 156 iv----THd~~e~~~~~d 169 (325)
T TIGR01187 156 FV----THDQEEAMTMSD 169 (325)
T ss_pred EE----eCCHHHHHHhCC
Confidence 65 455544444433
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.88 E-value=5.7e-22 Score=174.21 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| .+..++++++.
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999875421 12222 23356665441
Q ss_pred ------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 ------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+|+.+ ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LSgGe~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l~-~~ 192 (265)
T TIGR02769 118 LTSLDESEQKARIAELLDMVGLRSEDADKL--PRQLSGGQLQRINIARALAV--KPKLIVLDEAVSNLDMVLQAVIL-EL 192 (265)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCChhhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 456777888853 21111 23455554 4899999999 999999999999 9999999998 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccChHHH
Q 025795 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++.+. |.+++++ +|.......+
T Consensus 193 l~~~~~~~g~tiiiv----sH~~~~~~~~ 217 (265)
T TIGR02769 193 LRKLQQAFGTAYLFI----THDLRLVQSF 217 (265)
T ss_pred HHHHHHhcCcEEEEE----eCCHHHHHHH
Confidence 8888754 7787666 4555433333
No 137
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.88 E-value=8.2e-22 Score=163.97 Aligned_cols=125 Identities=15% Similarity=0.241 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhhHHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELISLEDVME 64 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~~~~~m~ 64 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..+++|++.....
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 4689999999999999999999999999999999876532 12223 223455554432110
Q ss_pred HhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025795 65 ELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (248)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (248)
++++ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+++.+++++ +
T Consensus 105 ----------------LS~G~~qrl~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~----s 161 (182)
T cd03215 105 ----------------LSGGNQQKVVLARWLAR--DPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKAVLLI----S 161 (182)
T ss_pred ----------------cCHHHHHHHHHHHHHcc--CCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----e
Confidence 3333 34899999999 999999999999 9999999999 8888886667777655 4
Q ss_pred ccccChHHHHH
Q 025795 142 QFITDVTKFIS 152 (248)
Q Consensus 142 ~~~~d~~~~~s 152 (248)
|...+..++++
T Consensus 162 h~~~~~~~~~d 172 (182)
T cd03215 162 SELDELLGLCD 172 (182)
T ss_pred CCHHHHHHhCC
Confidence 55544444443
No 138
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.88 E-value=4.7e-22 Score=189.74 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 117 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS 117 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence 4689999999999999999999999999999999876421 12223 23467777653
Q ss_pred ---HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795 59 ---LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 59 ---~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
+.++++.+++....... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.++|.+
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~t 192 (510)
T PRK15439 118 MQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMR--DSRILILDEPTASLTPAETERLF-SRIRELLAQGVG 192 (510)
T ss_pred HHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 45678889987543333 34566654 4899999999 999999999999 9999999999 889998777888
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
++++
T Consensus 193 iiiv 196 (510)
T PRK15439 193 IVFI 196 (510)
T ss_pred EEEE
Confidence 7765
No 139
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.5e-22 Score=162.59 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-C------cccChhhhhhHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-P------VAMDIRELISLEDVMEELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-~------~~~~i~e~i~~~~~m~~~~L~ 69 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.+... ..+.| + +..++++++.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 4689999999999999999999999999999999875431 12222 1 2234444332
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++ +++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++|.+++++
T Consensus 96 -----------LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiii~ 151 (173)
T cd03230 96 -----------LSGGMKQRLALAQALLH--DPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLS 151 (173)
T ss_pred -----------cCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 3333 44899999999 999999999999 9999999999 8899987667777655
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.6e-22 Score=174.36 Aligned_cols=141 Identities=19% Similarity=0.338 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 29 KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 4689999999999999999999999999999999865321 11222 22345555543
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~ 183 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQ--DTPVVLLDEPTTYLDINHQVELM-RLMRE 183 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 34556667775432222 23455554 4899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEEEecccccccChHHHHH
Q 025795 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.++|.+++++ +|...+..++++
T Consensus 184 l~~~~~tiii~----tH~~~~~~~~~d 206 (255)
T PRK11231 184 LNTQGKTVVTV----LHDLNQASRYCD 206 (255)
T ss_pred HHHCCCEEEEE----ECCHHHHHHhcC
Confidence 87667777655 465554444444
No 141
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.7e-22 Score=173.03 Aligned_cols=139 Identities=18% Similarity=0.269 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV 109 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHH
Confidence 4689999999999999999999999999999999876421 12222 11 135655543
Q ss_pred -HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCe
Q 025795 59 -LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFN 132 (248)
Q Consensus 59 -~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ 132 (248)
+.++++.+++.+ ..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++++ .|.+
T Consensus 110 ~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~t 184 (241)
T PRK14250 110 DVEYYLSIVGLNKEYATRD--VKNLSGGEAQRVSIARTLAN--NPEVLLLDEPTSALDPTSTEIIE-ELIVKLKNKMNLT 184 (241)
T ss_pred HHHHHHHHcCCCHHHhhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCE
Confidence 456778888852 22221 23455554 4899999999 999999999999 9999999988 88888876 4788
Q ss_pred EEEEEecccccccChHHH
Q 025795 133 VCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 133 ii~v~l~d~~~~~d~~~~ 150 (248)
++++ +|...+...+
T Consensus 185 ii~~----sH~~~~~~~~ 198 (241)
T PRK14250 185 VIWI----THNMEQAKRI 198 (241)
T ss_pred EEEE----eccHHHHHHh
Confidence 7665 4554433333
No 142
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.7e-22 Score=176.48 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC--------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY--------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y--------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ....++++++.
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~ 112 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK 112 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC
Confidence 4789999999999999999999999999999999976521 12233 11346666653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 113 ~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~--~p~lLilDEPt~gLD~~~~~~l~-~~l~~l 187 (283)
T PRK13636 113 LPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLVLDEPTAGLDPMGVSEIM-KLLVEM 187 (283)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHH
Confidence 45667888886543332 34456554 4899999999 999999999999 9999999999 888988
Q ss_pred HhC-CCeEEEEEecccccccChHHHHH
Q 025795 127 KSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++ |.+++++ +|...+...+++
T Consensus 188 ~~~~g~tillv----sH~~~~~~~~~d 210 (283)
T PRK13636 188 QKELGLTIIIA----THDIDIVPLYCD 210 (283)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCC
Confidence 764 7888666 466654444444
No 143
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=3.5e-22 Score=171.30 Aligned_cols=140 Identities=18% Similarity=0.226 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC-----CCCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l-----~~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|++ +|++|+|.+.|.+... ..+.| ++ ..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 106 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR 106 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHH
Confidence 468999999999999999999999 9999999999876421 12223 11 346666553
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+|+.+..........+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~ 183 (227)
T cd03260 107 LHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN--EPEVLLLDEPTSALDPISTAKIE-EL 183 (227)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 345667778765322211013455554 4899999999 999999999999 9999999999 98
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++.++ .+++++ +|.......+
T Consensus 184 l~~~~~~-~tii~~----sH~~~~~~~~ 206 (227)
T cd03260 184 IAELKKE-YTIVIV----THNMQQAARV 206 (227)
T ss_pred HHHHhhC-cEEEEE----eccHHHHHHh
Confidence 9988665 666554 4554433333
No 144
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.6e-22 Score=174.81 Aligned_cols=141 Identities=18% Similarity=0.380 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 34 HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 4689999999999999999999999999999999876421 11222 22345554432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQ--ETAIMLLDEPTTWLDISHQIDLL-ELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 34567777876432222 23455554 4899999999 999999999999 9999999999 88888
Q ss_pred HHh-CCCeEEEEEecccccccChHHHHH
Q 025795 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.+ .|.+++++ +|.......+++
T Consensus 189 l~~~~~~tiii~----tH~~~~~~~~~d 212 (265)
T PRK10253 189 LNREKGYTLAAV----LHDLNQACRYAS 212 (265)
T ss_pred HHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 875 47777665 455554444444
No 145
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=165.81 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------------------CCCCCCcccChhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIREL 56 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~y~~~~~i~e~ 56 (248)
++.|||.+|||||||++||.=+.+|+.|.|.++|....- +++.....+|+-++
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN 113 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN 113 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence 678999999999999999999999999999999854310 23333334455444
Q ss_pred hh-----------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 57 i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
+- ++..+.++|+..... .|+. .++++ ++++|||+|+. +|++++|||||+ |||...-
T Consensus 114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~-~LSGGQQQR~aIARaLam--eP~vmLFDEPTSALDPElVg 189 (256)
T COG4598 114 VIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPA-HLSGGQQQRVAIARALAM--EPEVMLFDEPTSALDPELVG 189 (256)
T ss_pred HHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCcc-ccCchHHHHHHHHHHHhc--CCceEeecCCcccCCHHHHH
Confidence 42 567788889887655 3433 34444 45999999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhCCCeEEEE
Q 025795 117 PVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 117 ~~~~~ll~~l~~~~~~ii~v 136 (248)
+++ ++++.|+++|.|.++|
T Consensus 190 EVL-kv~~~LAeEgrTMv~V 208 (256)
T COG4598 190 EVL-KVMQDLAEEGRTMVVV 208 (256)
T ss_pred HHH-HHHHHHHHhCCeEEEE
Confidence 999 9999999999998776
No 146
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.87 E-value=5.8e-22 Score=173.20 Aligned_cols=141 Identities=18% Similarity=0.281 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 28 SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 4789999999999999999999999999999999865421 11222 22345665542
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++....... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQ--EPKLLLLDEPTNHLDVRAQLETL-ALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-HHHHH
Confidence 33456667775432222 23355543 3899999999 999999999999 9999999998 88999
Q ss_pred HHhCCCeEEEEEecccccccChHHHHH
Q 025795 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++|.+++++ +|...+...+++
T Consensus 183 ~~~~~~tiii~----sH~~~~~~~~~d 205 (256)
T TIGR03873 183 LAATGVTVVAA----LHDLNLAASYCD 205 (256)
T ss_pred HHhcCCEEEEE----eCCHHHHHHhCC
Confidence 87667777655 455544444433
No 147
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.3e-22 Score=165.42 Aligned_cols=140 Identities=18% Similarity=0.287 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC-----ceEEEeccCCCCC---------CC------CCCcccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-----RTMHIVNLDPAAE---------NF------DYPVAMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~-----G~i~i~~~d~~~~---------~~------~y~~~~~i~e~i~---- 58 (248)
-++++|||+|||||||+|++..+..... |+|.+.|.+.-.. .+ |-+..++|+|++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r 113 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLR 113 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHH
Confidence 5789999999999999999999876654 9999999876321 11 1122478888886
Q ss_pred ------------HHHHHHHhCCCCCCc--hhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~--~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+++.++...|.+.-. +..+...++++ +++.|||+++. +|++|++||||+ |||.+...+- +
T Consensus 114 ~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv--~PeVlLmDEPtSALDPIsT~kIE-e 190 (253)
T COG1117 114 LHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV--KPEVLLMDEPTSALDPISTLKIE-E 190 (253)
T ss_pred hhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc--CCcEEEecCcccccCchhHHHHH-H
Confidence 444444444432110 11112235554 35899999999 999999999999 9999999987 9
Q ss_pred HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++.+|+ +..||++| +|.+...+.+
T Consensus 191 Li~eLk-~~yTIviV----THnmqQAaRv 214 (253)
T COG1117 191 LITELK-KKYTIVIV----THNMQQAARV 214 (253)
T ss_pred HHHHHH-hccEEEEE----eCCHHHHHHH
Confidence 999996 57888777 4666544443
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.87 E-value=1.3e-21 Score=170.57 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------------------CCCCCC-------CcccChhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------------------AENFDY-------PVAMDIRE 55 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--------------------~~~~~y-------~~~~~i~e 55 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| .+..++++
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 27 EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 468999999999999999999999999999999986542 112222 23456665
Q ss_pred hhh-----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795 56 LIS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (248)
Q Consensus 56 ~i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (248)
++. +.++++.+|+.+..... ...+++++ +++||++++. +|+++|+|||++ ||+.++
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 107 NVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM--PAQLSGGQQQRVAIARALAM--RPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC--hhhcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHH
Confidence 553 35667778876432221 23455554 3899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhC-CCeEEEE
Q 025795 116 VPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 116 ~~~~~~ll~~l~~~-~~~ii~v 136 (248)
..+. ++++++.++ |.+++++
T Consensus 183 ~~l~-~~l~~~~~~~~~tiiiv 203 (252)
T TIGR03005 183 GEVL-NVIRRLASEHDLTMLLV 203 (252)
T ss_pred HHHH-HHHHHHHHhcCcEEEEE
Confidence 9999 888888654 7787666
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.7e-22 Score=169.40 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
.+++|+||||||||||+++|+|.++|.+|+|.++|.+... ..+.| .+..++++++.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAE 106 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHH
Confidence 4789999999999999999999999999999999875421 22222 22346666553
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+|||+. ||+.++..+. ++++++.++ |
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~~~~ 181 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVN--EPKVLLLDEPLGALDLKLRKDMQ-LELKRLQKELG 181 (232)
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHHcC
Confidence 34567778887543332 23455554 3899999999 999999999999 9999999998 889888764 7
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 182 ~tiii~ 187 (232)
T cd03300 182 ITFVFV 187 (232)
T ss_pred CEEEEE
Confidence 787665
No 150
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.87 E-value=1.3e-21 Score=167.18 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 32 ~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 32 EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999998875421 12222 12345554332
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+++..... ...++.++ +++||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~ 186 (220)
T TIGR02982 112 NLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVH--RPKLVLADEPTAALDSKSGRDVV-ELMQK 186 (220)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcCCHHHHHHHH-HHHHH
Confidence 56778888886543332 23455543 4899999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEE
Q 025795 126 LKS-RNFNVCAV 136 (248)
Q Consensus 126 l~~-~~~~ii~v 136 (248)
+.+ .+.+++++
T Consensus 187 ~~~~~~~tii~~ 198 (220)
T TIGR02982 187 LAREQGCTILIV 198 (220)
T ss_pred HHHHcCCEEEEE
Confidence 865 47777665
No 151
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-22 Score=183.31 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~----- 58 (248)
-+++|+|+||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++.+++.
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999976521 12222 23345554432
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+|+.+.....+. ..+++++ +++||++++. +|++||+||||+ ||..++..++ +++
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-~~LSgGq~QRv~iArAL~~--~P~lLilDEPts~LD~~~~~~i~-~lL 197 (327)
T PRK11308 122 NTSLSAAERREKALAMMAKVGLRPEHYDRYP-HMFSGGQRQRIAIARALML--DPDVVVADEPVSALDVSVQAQVL-NLM 197 (327)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChHHhcCCC-ccCCHHHHHHHHHHHHHHc--CCCEEEEECCCccCCHHHHHHHH-HHH
Confidence 5678888998653222222 3466654 4899999999 999999999999 9999999999 899
Q ss_pred HHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 124 DHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++++ .|.++++| +|.+.....+++
T Consensus 198 ~~l~~~~g~til~i----THdl~~~~~~ad 223 (327)
T PRK11308 198 MDLQQELGLSYVFI----SHDLSVVEHIAD 223 (327)
T ss_pred HHHHHHcCCEEEEE----eCCHHHHHHhCC
Confidence 99876 48888766 455544444433
No 152
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.8e-22 Score=188.12 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 32 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 4789999999999999999999999999999999866421 12333 12345554432
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~--~p~lllLDEPt~~LD~~~~~~l~-~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLML--DAKVIIMDEPTSSLTNKEVDYLF-L 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-H
Confidence 34567788887543333 34566654 4999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhCCCeEEEE
Q 025795 122 FVDHLKSRNFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (248)
+++++++.|.+++++
T Consensus 187 ~l~~l~~~g~tiiiv 201 (510)
T PRK09700 187 IMNQLRKEGTAIVYI 201 (510)
T ss_pred HHHHHHhCCCEEEEE
Confidence 999987778887665
No 153
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.5e-22 Score=187.73 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+|+|+|+++| ++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 32 EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 47899999999999999999999986 79999999876421 22333 22345555431
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
++++++.+++....... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l 186 (506)
T PRK13549 112 GGIMDYDAMYLRAQKLLAQLKLDINPATP--VGNLGLGQQQLVEIAKALNK--QARLLILDEPTASLTESETAVLL-DII 186 (506)
T ss_pred cCCcCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 45678888986543332 34566654 4899999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEE
Q 025795 124 DHLKSRNFNVCAV 136 (248)
Q Consensus 124 ~~l~~~~~~ii~v 136 (248)
+++.++|.+++++
T Consensus 187 ~~l~~~~~tvi~~ 199 (506)
T PRK13549 187 RDLKAHGIACIYI 199 (506)
T ss_pred HHHHHCCCEEEEE
Confidence 9987677777665
No 154
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=4.5e-22 Score=165.22 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhh-HHHHHHHhCCCCCCchhhhHHhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS-LEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~-~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+..... +. ..+..+. +.++++.+|+.+..... ...+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~-~~~~~i~~~~q~l~~~gl~~~~~~~--~~~L 98 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS----PK-ELARKIAYVPQALELLGLAHLADRP--FNEL 98 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC----HH-HHHHHHhHHHHHHHHcCCHhHhcCC--cccC
Confidence 468999999999999999999999999999999987653211 00 1122222 33478888887543222 2345
Q ss_pred hhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 82 ~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++++++ +.+++++
T Consensus 99 S~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 99 SGGERQRVLLARALAQ--EPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMV 154 (180)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 5543 4899999999 999999999999 9999999988 888888665 6777655
No 155
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.2e-22 Score=170.60 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 26 e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~ 105 (235)
T cd03299 26 DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKE 105 (235)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999876532 11222 23456665553
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
+.++++.+++++..... ...+++++ +++||++++. +|+++++|||++ ||+.++..+. ++++++.++ +
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~~~~~~ 180 (235)
T cd03299 106 IERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVV--NPKILLLDEPFSALDVRTKEKLR-EELKKIRKEFG 180 (235)
T ss_pred HHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHc--CCCEEEECCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 34567788886543222 23455543 4899999999 999999999999 9999999998 888888654 7
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 181 ~tili~ 186 (235)
T cd03299 181 VTVLHV 186 (235)
T ss_pred CEEEEE
Confidence 777655
No 156
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=171.88 Aligned_cols=141 Identities=17% Similarity=0.076 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CCCCCCCCcccChhhhhh----------------HHHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELIS----------------LEDVMEE 65 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-~~~~~~y~~~~~i~e~i~----------------~~~~m~~ 65 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|... ..+...+.+..++++++. +.++++.
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEF 130 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988421 112223344456666553 2345566
Q ss_pred hCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795 66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (248)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (248)
+++++..... ...+++++ +++||++++. +|+++|+|||++ ||+.++..+. +++.++++.|.+++++ +|
T Consensus 131 ~~l~~~~~~~--~~~LS~Gq~qrv~Laral~~--~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~g~tiIii----sH 201 (264)
T PRK13546 131 SELGEFIYQP--VKKYSSGMRAKLGFSINITV--NPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFV----SH 201 (264)
T ss_pred cCCchhhcCC--cccCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHHHHCCCEEEEE----cC
Confidence 6776532222 23455554 3889999999 999999999999 9999999998 8888887678888766 45
Q ss_pred cccChHHHHH
Q 025795 143 FITDVTKFIS 152 (248)
Q Consensus 143 ~~~d~~~~~s 152 (248)
.......+++
T Consensus 202 ~~~~i~~~~d 211 (264)
T PRK13546 202 NLGQVRQFCT 211 (264)
T ss_pred CHHHHHHHcC
Confidence 5544444433
No 157
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5e-22 Score=176.68 Aligned_cols=141 Identities=17% Similarity=0.136 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC------------CCCCCC-Cc-------ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA------------AENFDY-PV-------AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~------------~~~~~y-~~-------~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~ 117 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV 117 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHH
Confidence 468999999999999999999999999999999886532 112333 11 225665543
Q ss_pred ------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 ------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 ------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+++. +..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 118 ~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~--~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~ 192 (289)
T PRK13645 118 NLGENKQEAYKKVPELLKLVQLPEDYVKRS--PFELSGGQKRRVALAGIIAM--DGNTLVLDEPTGGLDPKGEEDFI-NL 192 (289)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 34567777773 222221 24466654 4899999999 999999999999 9999999998 88
Q ss_pred HHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 123 VDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 123 l~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++.+ .|.+++++ +|...+...+++
T Consensus 193 l~~~~~~~~~tiiii----sH~~~~~~~~~d 219 (289)
T PRK13645 193 FERLNKEYKKRIIMV----THNMDQVLRIAD 219 (289)
T ss_pred HHHHHHhcCCEEEEE----ecCHHHHHHhCC
Confidence 888865 47777665 455544444444
No 158
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.87 E-value=1.1e-21 Score=169.61 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.++.. ..+.| .+..++++++.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~ 106 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAK 106 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHH
Confidence 4789999999999999999999999999999999876532 12222 22346665553
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
+.++++.+++.+..... ...++.++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.++ +
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~--~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~ 181 (237)
T TIGR00968 107 IKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAV--EPQVLLLDEPFGALDAKVRKELR-SWLRKLHDEVH 181 (237)
T ss_pred HHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 35667777776432222 23355543 3899999999 999999999999 9999999999 888888765 7
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.+++++ +|...+..++++
T Consensus 182 ~tvli~----sH~~~~~~~~~d 199 (237)
T TIGR00968 182 VTTVFV----THDQEEAMEVAD 199 (237)
T ss_pred CEEEEE----eCCHHHHHhhcC
Confidence 777655 455544344333
No 159
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=172.47 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC--------CcccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY--------PVAMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y--------~~~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ....++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~ 108 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCL 108 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCC
Confidence 4789999999999999999999999999999999876531 11222 11246666553
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+.++++.+|+++..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ +++++++
T Consensus 109 ~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~ 183 (274)
T PRK13644 109 PPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTM--EPECLIFDEVTSMLDPDSGIAVL-ERIKKLH 183 (274)
T ss_pred CHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45567778886543222 23455554 4899999999 999999999999 9999999999 8899887
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+.|.+++++
T Consensus 184 ~~g~til~~ 192 (274)
T PRK13644 184 EKGKTIVYI 192 (274)
T ss_pred hCCCEEEEE
Confidence 668887665
No 160
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.87 E-value=1.4e-21 Score=167.30 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe--cc--CCC-----------CCCCCC-------CcccChhhhhh--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV--NL--DPA-----------AENFDY-------PVAMDIRELIS-- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~--~~--d~~-----------~~~~~y-------~~~~~i~e~i~-- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+. |. +.. ...+.| .+..++++++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 4689999999999999999999999999999997 32 321 112333 22345555542
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+++.+..... ....+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LS~G~~qrl~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 190 (224)
T TIGR02324 115 LLERGVPREAARARARELLARLNIPERLWHL-PPATFSGGEQQRVNIARGFIA--DYPILLLDEPTASLDAANRQVVV-E 190 (224)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhhC-CcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 34567778876421111 123455543 4899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025795 122 FVDHLKSRNFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (248)
++++++++|.+++++
T Consensus 191 ~l~~~~~~g~tii~v 205 (224)
T TIGR02324 191 LIAEAKARGAALIGI 205 (224)
T ss_pred HHHHHHhcCCEEEEE
Confidence 889887668787666
No 161
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=1.9e-21 Score=166.87 Aligned_cols=129 Identities=22% Similarity=0.342 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC----CCCCC-------CcccChhhhhhH---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL--------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~~--------- 59 (248)
-+++|+||||||||||+++|+|+++ |++|+|.+.|.++.. ..+.| .+.+++++++..
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~ 113 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRK 113 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccc
Confidence 4789999999999999999999999 899999999876531 11222 334577776641
Q ss_pred ----------HH-HHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 60 ----------ED-VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 60 ----------~~-~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++ .++.+++.+..... ...+++++ ++++|++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~illlDEP~~gLD~~~~~~~~-~~l~~ 188 (226)
T cd03234 114 SSDAIRKKRVEDVLLRDLALTRIGGNL--VKGISGGERRRVSIAVQLLW--DPKVLILDEPTSGLDSFTALNLV-STLSQ 188 (226)
T ss_pred cchHHHHHHHHHHHHHhhcchhhhccc--ccCcCHHHHHHHHHHHHHHh--CCCEEEEeCCCcCCCHHHHHHHH-HHHHH
Confidence 12 34445554332111 12344443 4899999999 999999999999 9999999999 88888
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+.+.+++++
T Consensus 189 ~~~~~~tiii~ 199 (226)
T cd03234 189 LARRNRIVILT 199 (226)
T ss_pred HHHCCCEEEEE
Confidence 87667777655
No 162
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-21 Score=172.73 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ....++.+++.
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~ 113 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP 113 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC
Confidence 4689999999999999999999999999999999976532 12222 12346777663
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++++++.+
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~l~~l~~ 188 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLAL--QPDIIILDEATSMLDPRGRREVL-ETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45677788887643333 23566654 3899999999 999999999999 9999999999 99999876
Q ss_pred C-CCeEEEE
Q 025795 129 R-NFNVCAV 136 (248)
Q Consensus 129 ~-~~~ii~v 136 (248)
. |.+++++
T Consensus 189 ~~~~tiliv 197 (279)
T PRK13635 189 QKGITVLSI 197 (279)
T ss_pred cCCCEEEEE
Confidence 5 7787666
No 163
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-21 Score=166.03 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhhHHH------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELISLED------ 61 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~~~~------ 61 (248)
-+++++||||+||||++|+|+|+.++.+|+|.+.|.|... ..+.| ++.+||+|++.+--
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~ 109 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK 109 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccccc
Confidence 5799999999999999999999999999999999998753 23333 45778888875210
Q ss_pred ------HHHHhCCCCCCchh--hhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-
Q 025795 62 ------VMEELGLGPNGGLI--YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR- 129 (248)
Q Consensus 62 ------~m~~~~L~~~~~~~--~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~- 129 (248)
+-+.+.+-|..... ...-.++++.+ ++|||+|+. +|++|+||||+. |-|....+++ +.+++++++
T Consensus 110 ~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~--~PklLLLDEPs~GLaP~iv~~I~-~~i~~l~~~~ 186 (237)
T COG0410 110 EAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS--RPKLLLLDEPSEGLAPKIVEEIF-EAIKELRKEG 186 (237)
T ss_pred ccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc--CCCEEEecCCccCcCHHHHHHHH-HHHHHHHHcC
Confidence 11122333321111 00123444322 889999999 999999999999 9999999999 999999865
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
|.+|+.|
T Consensus 187 g~tIlLV 193 (237)
T COG0410 187 GMTILLV 193 (237)
T ss_pred CcEEEEE
Confidence 7788766
No 164
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.7e-22 Score=176.70 Aligned_cols=158 Identities=20% Similarity=0.228 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------ 58 (248)
-+.+|+|-+|||||||+|++.++++|+.|+|.+.|.|+.. |+++..|..||-+++.
T Consensus 55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~ 134 (386)
T COG4175 55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 134 (386)
T ss_pred eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec
Confidence 4788999999999999999999999999999999998753 5666677778887765
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+||....... .+.+++++ ++-|||||+. +|+++++|||++ |||-.+.++..+ +.+
T Consensus 135 Gv~~~er~~~a~~~l~~VgL~~~~~~y--p~eLSGGMqQRVGLARAla~--~~~IlLMDEaFSALDPLIR~~mQde-Ll~ 209 (386)
T COG4175 135 GVPKAEREERALEALELVGLEGYADKY--PNELSGGMQQRVGLARALAN--DPDILLMDEAFSALDPLIRTEMQDE-LLE 209 (386)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhcC--cccccchHHHHHHHHHHHcc--CCCEEEecCchhhcChHHHHHHHHH-HHH
Confidence 78899999998775443 35677765 4899999999 999999999999 999999998844 445
Q ss_pred HH-hCCCeEEEEEecccccccChHHHHHHH-HHHHHHHHhhCCCee
Q 025795 126 LK-SRNFNVCAVYLLDSQFITDVTKFISGC-MASLSAMVQLELPHV 169 (248)
Q Consensus 126 l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~-l~~~~~~~~~~~p~~ 169 (248)
|+ +.++|+++| +|.+.+.-++-+.+ ++-.+..+..|+|..
T Consensus 210 Lq~~l~KTIvFi----tHDLdEAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 210 LQAKLKKTIVFI----THDLDEALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred HHHHhCCeEEEE----ecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence 54 458888877 34444444433322 233344555666654
No 165
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.4e-21 Score=172.31 Aligned_cols=129 Identities=14% Similarity=0.195 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 115 (271)
T PRK13632 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP 115 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC
Confidence 4789999999999999999999999999999999976531 12333 12357777654
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..++ ++++++.+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEP~~gLD~~~~~~l~-~~l~~~~~ 190 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLAL--NPEIIIFDESTSMLDPKGKREIK-KIMVDLRK 190 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34567778886532222 23455554 3899999999 999999999999 9999999999 88998876
Q ss_pred C-CCeEEEE
Q 025795 129 R-NFNVCAV 136 (248)
Q Consensus 129 ~-~~~ii~v 136 (248)
+ +.+++++
T Consensus 191 ~~~~tiii~ 199 (271)
T PRK13632 191 TRKKTLISI 199 (271)
T ss_pred hcCcEEEEE
Confidence 5 4677655
No 166
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.3e-21 Score=185.69 Aligned_cols=129 Identities=12% Similarity=0.189 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 25 SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 4789999999999999999999999999999999875421 12222 22345555432
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++++++.+++....... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRAK--VATLSVSQMQMIEIAKAFSY--NAKIVIMDEPTSSLTEKEVNHLF-TIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45667778886443222 34566654 4899999999 999999999999 9999999999 88999
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+.|.+++++
T Consensus 180 l~~~g~tvii~ 190 (491)
T PRK10982 180 LKERGCGIVYI 190 (491)
T ss_pred HHhCCCEEEEE
Confidence 87778787665
No 167
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.7e-22 Score=163.56 Aligned_cols=117 Identities=23% Similarity=0.282 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC-CcccChhhhhhHHHHHHHhCCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY-PVAMDIRELISLEDVMEELGLGPNG 72 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~ 72 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++.......++.+.+. +.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~---~~--- 100 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIA---LG--- 100 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHhee---ec---
Confidence 4789999999999999999999999999999999875421 11222 11111111111222111 10
Q ss_pred chhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 73 GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 73 ~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
++++ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++.++ +.+++++
T Consensus 101 --------lS~G~~qr~~la~al~~--~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiii~ 157 (178)
T cd03229 101 --------LSGGQQQRVALARALAM--DPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGITVVLV 157 (178)
T ss_pred --------CCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 3333 44899999999 999999999999 9999999999 889988765 6777655
No 168
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.87 E-value=7.6e-22 Score=187.29 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc--------------ccChhhhh---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV--------------AMDIRELI--- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~--------------~~~i~e~i--- 57 (248)
-+++|+||||||||||+|+|+|+++|++|+|.+.|.++.. +.++| ++ ..++++++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 30 DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 4689999999999999999999999999999988765421 11222 11 24666654
Q ss_pred -----hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 58 -----SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 58 -----~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
.++++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++++++
T Consensus 110 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~ 184 (490)
T PRK10938 110 VKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMS--EPDLLILDEPFDGLDVASRQQLA-ELLASLHQS 184 (490)
T ss_pred hhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhc
Confidence 256788899997643332 34566654 4899999999 999999999999 9999999999 999998767
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
|.+++++
T Consensus 185 g~tvii~ 191 (490)
T PRK10938 185 GITLVLV 191 (490)
T ss_pred CCeEEEE
Confidence 7787665
No 169
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.7e-21 Score=182.47 Aligned_cols=143 Identities=17% Similarity=0.212 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------CCCCCCcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------ENFDYPVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------~~~~y~~~~~i~e~i~--------- 58 (248)
-+++++|.||+|||||+|+|+|.++|++|+|.++|..... |++...|+++|.|++.
T Consensus 35 EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 5799999999999999999999999999999999975421 5566678889888884
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 -----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
+.++|+++++...... ....++-.+ -+.||+++.. +++++||||||+ |.......++ ++++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~~~~--~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~Lf-~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDIDPDT--LVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETERLF-DLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCChhh--hhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 6778888887521111 122233322 2899999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEEEecccccccChHHHHHHH
Q 025795 125 HLKSRNFNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 125 ~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
+|+++|.++++| ||.+.+...+++.+
T Consensus 190 ~Lk~~Gv~ii~I----SHrl~Ei~~i~Dri 215 (500)
T COG1129 190 RLKAQGVAIIYI----SHRLDEVFEIADRI 215 (500)
T ss_pred HHHhCCCEEEEE----cCcHHHHHHhcCEE
Confidence 999999999877 67777776666644
No 170
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=1.6e-21 Score=169.50 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.+... +.+.| ++ ..++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~ 107 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPR 107 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHH
Confidence 478999999999999999999999998 9999999876531 12333 11 145665543
Q ss_pred -------------HHHHHHHhCCCC----CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 -------------LEDVMEELGLGP----NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 -------------~~~~m~~~~L~~----~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+|+.+ .... ....+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l 183 (247)
T TIGR00972 108 LHGIKDKKELDEIVEESLKKAALWDEVKDRLHD--SALGLSGGQQQRLCIARALAV--EPEVLLLDEPTSALDPIATGKI 183 (247)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHH
Confidence 345667778862 2111 123455554 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
. ++++++++ +.+++++ +|...+...+
T Consensus 184 ~-~~l~~~~~-~~tiiiv----sH~~~~~~~~ 209 (247)
T TIGR00972 184 E-ELIQELKK-KYTIVIV----THNMQQAARI 209 (247)
T ss_pred H-HHHHHHHh-cCeEEEE----ecCHHHHHHh
Confidence 8 88998865 4666554 4555443433
No 171
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.86 E-value=1.2e-21 Score=171.02 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC--CCCCCCCcc--cChhhhh---------hHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA--AENFDYPVA--MDIRELI---------SLEDVMEELGL 68 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~--~~~~~y~~~--~~i~e~i---------~~~~~m~~~~L 68 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .+ .+...+.+. .++++++ .+.++++.+++
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl 110 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999987631 10 111111121 2454443 25677888888
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccc
Q 025795 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFI 144 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~ 144 (248)
.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++ |.+++++ +|..
T Consensus 111 ~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~tiiiv----sH~~ 181 (251)
T PRK09544 111 GHLIDAP--MQKLSGGETQRVLLARALLN--RPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCAVLMV----SHDL 181 (251)
T ss_pred hHHHhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ecCH
Confidence 7543222 34466554 4899999999 999999999999 9999999998 888888654 7787665 4555
Q ss_pred cChHHHHH
Q 025795 145 TDVTKFIS 152 (248)
Q Consensus 145 ~d~~~~~s 152 (248)
.+...+++
T Consensus 182 ~~i~~~~d 189 (251)
T PRK09544 182 HLVMAKTD 189 (251)
T ss_pred HHHHHhCC
Confidence 44444444
No 172
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=185.47 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++++++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 31 QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 4789999999999999999999999999999999876421 12333 22345555442
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDTP--LKYLSIGQRQMVEIAKALAR--NARVIAFDEPTSSLSAREIEQLF-RVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCCc--hhhCCHHHHHHHHHHHHHHh--CCCEEEEcCCCCCCCHHHHHHHH-HHHHH
Confidence 45677888886543332 34566654 4899999999 999999999999 9999999998 88898
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+.|.+++++
T Consensus 186 ~~~~g~tiiii 196 (501)
T PRK11288 186 LRAEGRVILYV 196 (501)
T ss_pred HHhCCCEEEEE
Confidence 87678787766
No 173
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=185.82 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| .+.+++++++.
T Consensus 290 e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 4689999999999999999999999999999999865421 12222 22345555432
Q ss_pred -------------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795 59 -------------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (248)
Q Consensus 59 -------------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (248)
+.++++.+++. ...... ...+++++ ++.||++++. +|+++|+||||+ ||+.++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~lAral~~--~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN--ITELSGGNQQKVLISKWLCC--CPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCccCc--cccCChHHHHHHHHHHHHhc--CCCEEEECCCCCCcCHHHH
Confidence 34677888885 332222 24566654 4899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
..+. +++++++++|.+++++ +|.......+++
T Consensus 446 ~~l~-~~l~~l~~~g~tvi~v----sHd~~~~~~~~d 477 (510)
T PRK09700 446 AEIY-KVMRQLADDGKVILMV----SSELPEIITVCD 477 (510)
T ss_pred HHHH-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence 9999 9999987778887666 566554455544
No 174
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.2e-21 Score=169.79 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++++++.
T Consensus 36 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~ 115 (269)
T PRK13648 36 QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP 115 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC
Confidence 4789999999999999999999999999999999976531 12333 11223443331
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+++.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~ 190 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLAL--NPSVIILDEATSMLDPDARQNLL-DLVRKVKS 190 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 45678888887543322 23455544 4899999999 999999999999 9999999999 88888865
Q ss_pred C-CCeEEEE
Q 025795 129 R-NFNVCAV 136 (248)
Q Consensus 129 ~-~~~ii~v 136 (248)
+ |.+++++
T Consensus 191 ~~~~tiiiv 199 (269)
T PRK13648 191 EHNITIISI 199 (269)
T ss_pred hcCCEEEEE
Confidence 4 7787665
No 175
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.86 E-value=2.5e-21 Score=162.73 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC----CCCCC-------CcccChhhhhhHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELISLEDVMEELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~~~~~m~~~~L~ 69 (248)
-+++|+||||||||||+++|+|++ +|.+|+|.++|.++.. ..+.| .+..++++++.....+ .
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---~-- 110 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL---R-- 110 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh---c--
Confidence 468999999999999999999999 9999999999987532 12222 2345666655432111 0
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++++ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+++.+++++
T Consensus 111 ----------~LS~G~~qrv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 167 (194)
T cd03213 111 ----------GLSGGERKRVSIALELVS--NPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRTIICS 167 (194)
T ss_pred ----------cCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 24444 34899999999 999999999999 9999999988 8888887667787665
No 176
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=168.81 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-------CCCCC-------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| .+..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 109 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHh
Confidence 47899999999999999999999974 69999999876421 12222 23456666653
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+. .........+++++ ++++|++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~- 186 (250)
T PRK14247 110 NRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF--QPEVLLADEPTANLDPENTAKIE- 186 (250)
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2345666777431 01111123455554 4899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|.......+
T Consensus 187 ~~l~~~~~-~~tiii~----sH~~~~~~~~ 211 (250)
T PRK14247 187 SLFLELKK-DMTIVLV----THFPQQAARI 211 (250)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHh
Confidence 88888854 6676555 4555433333
No 177
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=170.85 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC------------CCCCC-------CcccChhhhhh--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA------------ENFDY-------PVAMDIRELIS-- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~------------~~~~y-------~~~~~i~e~i~-- 58 (248)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 31 EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 478999999999999999999999886 4999999965421 11222 23356665542
Q ss_pred ----------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHH
Q 025795 59 ----------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (248)
Q Consensus 59 ----------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~ 113 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~ 186 (262)
T PRK09984 111 ALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR--VSTLSGGQQQRVAIARALMQ--QAKVILADEPIASLDPE 186 (262)
T ss_pred hcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC--ccccCHHHHHHHHHHHHHhc--CCCEEEecCccccCCHH
Confidence 45567778876432222 23455543 4899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHH
Q 025795 114 THVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 114 ~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++..+. ++++++.+ .|.+++++ +|.......+
T Consensus 187 ~~~~l~-~~l~~~~~~~g~tvii~----tH~~~~~~~~ 219 (262)
T PRK09984 187 SARIVM-DTLRDINQNDGITVVVT----LHQVDYALRY 219 (262)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHh
Confidence 999998 88998875 47787665 4555433333
No 178
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.86 E-value=4.2e-21 Score=158.44 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Ccc-----cChhhhhhHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVA-----MDIRELISLEDVMEELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~~-----~~i~e~i~~~~~m~~~~L~ 69 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| +++ .++++++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l------------ 96 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------ 96 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHC------------
Confidence 3689999999999999999999999999999999876421 12222 111 1333322
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++ +++.||++++. +|+++|+||||+ ||+.++..+. ++++++.++|.+++++
T Consensus 97 -----------LS~G~~qrv~la~al~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~ 152 (173)
T cd03246 97 -----------LSGGQRQRLGLARALYG--NPRILVLDEPNSHLDVEGERALN-QAIAALKAAGATRIVI 152 (173)
T ss_pred -----------cCHHHHHHHHHHHHHhc--CCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 3333 45899999999 999999999999 9999999999 8888887667777665
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=3.3e-21 Score=168.55 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-----CCC-----------CCCCC-C--------cccChhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-P--------VAMDIRELI 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~y-~--------~~~~i~e~i 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+ +.. ..+.| + +..++++++
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 4789999999999999999999999999999999976 321 12333 1 123333332
Q ss_pred -----------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 58 -----------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
.+.++++.+++++ ..... ...+++++ +++||++++. +|+++|+||||+ ||+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~Gq~qrl~laral~~--~p~llllDEPt~~LD~~~~~ 188 (258)
T PRK11701 113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL--PTTFSGGMQQRLQIARNLVT--HPRLVFMDEPTGGLDVSVQA 188 (258)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC--CccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHH
Confidence 1456778888863 21111 23455554 4899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEEEecccccccChHHH
Q 025795 117 PVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 117 ~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+. ++++++.++ |.+++++ +|.......+
T Consensus 189 ~l~-~~l~~~~~~~~~tii~i----sH~~~~~~~~ 218 (258)
T PRK11701 189 RLL-DLLRGLVRELGLAVVIV----THDLAVARLL 218 (258)
T ss_pred HHH-HHHHHHHHhcCcEEEEE----eCCHHHHHHh
Confidence 998 888888654 7777665 4555443333
No 180
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=4.8e-21 Score=164.44 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+.+|++|+|.+.|.++.. ..+.| + ...++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 113 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD 113 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcCCChH
Confidence 4689999999999999999999999999999999865421 12222 1 1236766653
Q ss_pred ---HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ---LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ---~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.. ..... ...++++. ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKN--IAELSGGEKQRISLIRNLQF--MPKVLLLDEITSALDESNKHNVN-EIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 356777888852 11111 23455543 4899999999 999999999999 9999999888 88888865 47
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 189 ~tvii~ 194 (225)
T PRK10247 189 IAVLWV 194 (225)
T ss_pred CEEEEE
Confidence 777666
No 181
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=9.8e-22 Score=170.17 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCC------CCC--------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAEN------FDY--------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~------~~y--------~~~~~i~e~i~---------- 58 (248)
-+++++||||+||||++|+|+|++.|++|.|.++|.+|..+. +.+ .-++.+.+.+.
T Consensus 51 ~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd 130 (325)
T COG4586 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130 (325)
T ss_pred cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCH
Confidence 478999999999999999999999999999999999995421 111 00222333222
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-
Q 025795 59 ------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS- 128 (248)
Q Consensus 59 ------~~~~m~~~~L~~~~~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~- 128 (248)
.+...+.+++++..... +..++- +++..||.+|.+ +|++++|||||- ||..++..+. +++++..+
T Consensus 131 ~~F~~r~~~l~eiLdl~~~lk~~--vr~LSlGqRmraeLaaaLLh--~p~VLfLDEpTvgLDV~aq~~ir-~Flke~n~~ 205 (325)
T COG4586 131 DEFAERLDFLTEILDLEGFLKWP--VRKLSLGQRMRAELAAALLH--PPKVLFLDEPTVGLDVNAQANIR-EFLKEYNEE 205 (325)
T ss_pred HHHHHHHHHHHHHhcchhhhhhh--hhhccchHHHHHHHHHHhcC--CCcEEEecCCccCcchhHHHHHH-HHHHHHHHh
Confidence 34455556776543322 344444 455899999999 999999999998 9999999988 99999875
Q ss_pred CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhC
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 165 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~ 165 (248)
.+.||+ ..+|.+.|...+|..+++...+.+..+
T Consensus 206 ~~aTVl----lTTH~~~di~~lc~rv~~I~~Gqlv~d 238 (325)
T COG4586 206 RQATVL----LTTHIFDDIATLCDRVLLIDQGQLVFD 238 (325)
T ss_pred hCceEE----EEecchhhHHHhhhheEEeeCCcEeec
Confidence 577775 458999999999998877666655554
No 182
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.1e-21 Score=184.80 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i------- 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+..++.+++
T Consensus 280 e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 4789999999999999999999999999999998865421 11222 2224454442
Q ss_pred ---------------hHHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 58 ---------------SLEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 58 ---------------~~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
.+.++++.+++. ...... ...+++++ ++.||++++. +|+++|+||||+ ||+.+++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrl~la~al~~--~p~lllLDEPt~~LD~~~~~~l 435 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQL--IMNLSGGNQQKAILGRWLSE--DMKVILLDEPTRGIDVGAKHEI 435 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCc--cccCCHHHHHHHHHHHHHcc--CCCEEEEcCCCCCCCHhHHHHH
Confidence 145677788884 332222 34566654 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+ ++++++++.|.+++++ +|.......+++
T Consensus 436 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d 464 (501)
T PRK11288 436 Y-NVIYELAAQGVAVLFV----SSDLPEVLGVAD 464 (501)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHhhCC
Confidence 9 9999998778888766 566655555544
No 183
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=2.5e-21 Score=171.01 Aligned_cols=141 Identities=20% Similarity=0.184 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC--------CceEEEeccCCCC-------CCCCC-------CcccChhhhhh--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--------RRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS-- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~--------~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~-- 58 (248)
-+++|+||||||||||+++|+|+++|. +|+|.++|.+... ..+.| .+..++++++.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 468999999999999999999999998 8999999875421 11111 12345665542
Q ss_pred ------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHc---------cCCCCCEEEEeCCCc
Q 025795 59 ------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD---------NYLDDDYLVFDCPGQ 109 (248)
Q Consensus 59 ------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~---------~~~~p~~lilDEPt~ 109 (248)
+.++++.+++.+..... ...+++++ ++.||++++ . +|+++|+||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~~~~~~~~~--~p~lllLDEPt~ 183 (272)
T PRK13547 108 RYPHARRAGALTHRDGEIAWQALALAGATALVGRD--VTTLSGGELARVQFARVLAQLWPPHDAAQ--PPRYLLLDEPTA 183 (272)
T ss_pred ccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhccccccccCC--CCCEEEEcCccc
Confidence 34566677776543222 23455554 489999999 5 899999999999
Q ss_pred -cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795 110 -IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
||+.++..+. ++++++.++ |.+++++ +|...+..++++
T Consensus 184 ~LD~~~~~~l~-~~l~~~~~~~~~tviii----sH~~~~~~~~~d 223 (272)
T PRK13547 184 ALDLAHQHRLL-DTVRRLARDWNLGVLAI----VHDPNLAARHAD 223 (272)
T ss_pred cCCHHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 9999999999 889988764 7787665 455544444433
No 184
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=1.9e-21 Score=183.96 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-CCCCCCCcccChhhhhh----------------HHHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS----------------LEDVMEE 65 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-~~~~~y~~~~~i~e~i~----------------~~~~m~~ 65 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+.. .....+.+.+++++++. +.++++.
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999886521 11122344567777653 2356777
Q ss_pred hCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795 66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (248)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (248)
+++++..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ ++++++++.|.+++++ +|
T Consensus 131 lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~--~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~TIIIV----SH 201 (549)
T PRK13545 131 ADIGKFIYQP--VKTYSSGMKSRLGFAISVHI--NPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGKTIFFI----SH 201 (549)
T ss_pred cCChhHhhCC--cccCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE----EC
Confidence 8886543222 23466654 4899999999 999999999999 9999999999 8888887667787665 45
Q ss_pred cccChHHHHHH
Q 025795 143 FITDVTKFISG 153 (248)
Q Consensus 143 ~~~d~~~~~s~ 153 (248)
.......+|+.
T Consensus 202 dl~~i~~l~Dr 212 (549)
T PRK13545 202 SLSQVKSFCTK 212 (549)
T ss_pred CHHHHHHhCCE
Confidence 55444444443
No 185
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=3.4e-21 Score=183.85 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i------- 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+..++.+++
T Consensus 290 e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 4789999999999999999999999999999998865421 12333 1223444432
Q ss_pred ------------hHHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 58 ------------SLEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 58 ------------~~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
.++++++.+++. ...... ...+++++ ++.||++++. +|++||+||||+ ||+.++..+. +
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~--~p~lLlLDEPt~gLD~~~~~~l~-~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEA--SPQLLIVDEPTRGVDVSARNDIY-Q 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhh--CCCEEEECCCCcCcChhHHHHHH-H
Confidence 145678888886 333222 24566654 4899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++++|.+++++ +|.......+++
T Consensus 445 ~l~~l~~~g~tiIiv----sHd~~~i~~~~d 471 (510)
T PRK15439 445 LIRSIAAQNVAVLFI----SSDLEEIEQMAD 471 (510)
T ss_pred HHHHHHhCCCEEEEE----CCCHHHHHHhCC
Confidence 999987778887666 566655555544
No 186
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.7e-21 Score=170.64 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC---ceEEEeccCCCC-------CCCCC--------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR---RTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~---G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+.| .+..++++++.
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~ 113 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC
Confidence 4789999999999999999999999987 899999976532 12333 12346777663
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~--~P~llllDEPt~gLD~~~~~~l~-~~l~~ 188 (282)
T PRK13640 114 AVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAV--EPKIIILDESTSMLDPAGKEQIL-KLIRK 188 (282)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHH
Confidence 34567778887543332 23455554 4899999999 999999999999 9999999999 88888
Q ss_pred HHhC-CCeEEEE
Q 025795 126 LKSR-NFNVCAV 136 (248)
Q Consensus 126 l~~~-~~~ii~v 136 (248)
+.++ |.+++++
T Consensus 189 l~~~~g~tvli~ 200 (282)
T PRK13640 189 LKKKNNLTVISI 200 (282)
T ss_pred HHHhcCCEEEEE
Confidence 8754 7787665
No 187
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.86 E-value=6.8e-21 Score=166.33 Aligned_cols=141 Identities=15% Similarity=0.241 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC----CCceEEEeccCCCC-----CCCCC---------CcccChhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET----VRRTMHIVNLDPAA-----ENFDY---------PVAMDIRELI------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~----~~G~i~i~~~d~~~-----~~~~y---------~~~~~i~e~i------- 57 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| .+..++.+++
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 109 (254)
T PRK10418 30 RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL 109 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc
Confidence 47899999999999999999999999 99999999876421 11222 2223433322
Q ss_pred -------hHHHHHHHhCCCCCCc-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 58 -------SLEDVMEELGLGPNGG-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 58 -------~~~~~m~~~~L~~~~~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
.+.++++.+++.+... .......+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 110 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~ 186 (254)
T PRK10418 110 GKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC--EAPFIIADEPTTDLDVVAQARIL-DLLESI 186 (254)
T ss_pred CCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HHHHHH
Confidence 1566788888875210 011123455554 4899999999 999999999999 9999999998 888888
Q ss_pred Hh-CCCeEEEEEecccccccChHHH
Q 025795 127 KS-RNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+ .|.+++++ +|...+...+
T Consensus 187 ~~~~g~til~~----sH~~~~~~~~ 207 (254)
T PRK10418 187 VQKRALGMLLV----THDMGVVARL 207 (254)
T ss_pred HHhcCcEEEEE----ecCHHHHHHh
Confidence 65 47787665 4555443333
No 188
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.1e-21 Score=169.44 Aligned_cols=141 Identities=15% Similarity=0.271 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----CCCCC-Cc--------ccChhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----ENFDY-PV--------AMDIRELI------------ 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----~~~~y-~~--------~~~i~e~i------------ 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 34 SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 4689999999999999999999999999999998865321 11222 10 11222221
Q ss_pred --------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 58 --------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 58 --------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
.+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~laraL~~--~p~llllDEPt~~LD~~~~~~l~-~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHRQ--IGELSGGQKKRVFLARAIAQ--QGQVILLDEPFTGVDVKTEARII-SLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHH
Confidence 245677888886543222 23455554 4899999999 999999999999 9999999998 889998
Q ss_pred HhCCCeEEEEEecccccccChHHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+++|.+++++ +|...+...+++
T Consensus 189 ~~~g~tviiv----sH~~~~~~~~~d 210 (272)
T PRK15056 189 RDEGKTMLVS----THNLGSVTEFCD 210 (272)
T ss_pred HhCCCEEEEE----eCCHHHHHHhCC
Confidence 7667777655 455544444444
No 189
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.86 E-value=3.1e-21 Score=183.67 Aligned_cols=141 Identities=16% Similarity=0.254 Sum_probs=104.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..++| .+.+++++++.
T Consensus 279 e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 4789999999999999999999999999999999865421 12333 12245554331
Q ss_pred ----------------HHHHHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ----------------LEDVMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ----------------~~~~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
++++++.+++. +..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGekqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 434 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA--IGLLSGGNQQKVAIARGLMT--RPKVLILDEPTRGVDVGAKKEI 434 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCccCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCCCHhHHHHH
Confidence 45677888884 333322 34566654 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
. ++++++.++|.+++++ +|.......+++
T Consensus 435 ~-~~l~~~~~~g~tviiv----tHd~~~~~~~~d 463 (501)
T PRK10762 435 Y-QLINQFKAEGLSIILV----SSEMPEVLGMSD 463 (501)
T ss_pred H-HHHHHHHHCCCEEEEE----cCCHHHHHhhCC
Confidence 9 9999987678887666 465554444443
No 190
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.5e-21 Score=184.54 Aligned_cols=141 Identities=14% Similarity=0.220 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+|+|+|+++ |++|+|.+.|.++.. ..+.| .+.+++.+++.
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~ 368 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALD 368 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhh
Confidence 4789999999999999999999998 599999999865421 11222 12345544331
Q ss_pred ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++.+ ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrv~lA~al~~--~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 369 RFTGGSRIDDAAELKTILESIQRLKVKTASPELA--IARLSGGNQQKAVLAKCLLL--NPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hhccCcccChHHHHHHHHHHHHhcCccCCCcccc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 456778888853 32222 34566654 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
. +++++++++|.+++++ +|.......+++
T Consensus 445 ~-~~l~~l~~~g~tvi~~----sHd~~~~~~~~d 473 (506)
T PRK13549 445 Y-KLINQLVQQGVAIIVI----SSELPEVLGLSD 473 (506)
T ss_pred H-HHHHHHHHCCCEEEEE----CCCHHHHHHhCC
Confidence 9 9999987778888665 566655555544
No 191
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=7e-22 Score=186.25 Aligned_cols=142 Identities=19% Similarity=0.231 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CC----------------CCCCCCcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AA----------------ENFDYPVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~----------------~~~~y~~~~~i~e~i~------ 58 (248)
-+++|+|++||||||+.|+|+|+.+|++|.|.++|.+. .. ......|..||++.+.
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 47899999999999999999999999999999999762 10 1122256778887775
Q ss_pred -----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 -----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
+.++++..||+++-...|+ ..+++++ +++||++|+. +|+++++|||++ ||+-.+..+. +++.
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP-~elSGGQrQRvaIARALa~--~P~lli~DEp~SaLDvsvqa~Vl-nLl~ 473 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALAL--EPKLLILDEPVSALDVSVQAQVL-NLLK 473 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCc-hhcCcchhHHHHHHHHHhc--CCCEEEecCCccccCHHHHHHHH-HHHH
Confidence 6778999999986555555 4566654 4999999999 999999999999 9999999999 9999
Q ss_pred HHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 125 HLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++ .|.+.++| ||.+.-...+|+
T Consensus 474 ~lq~e~g~t~lfI----SHDl~vV~~i~d 498 (539)
T COG1123 474 DLQEELGLTYLFI----SHDLAVVRYIAD 498 (539)
T ss_pred HHHHHhCCEEEEE----eCCHHHHHhhCc
Confidence 9986 48888777 455543333333
No 192
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=169.08 Aligned_cols=130 Identities=19% Similarity=0.259 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 112 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLR 112 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHH
Confidence 4789999999999999999999864 589999999876421 12333 11 136666654
Q ss_pred -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
++++++.+++.+.- . .......+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 189 (253)
T PRK14242 113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV--EPEVLLMDEPASALDPIATQKIE- 189 (253)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23345566664310 0 001123355554 4899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 190 ~~l~~~~~-~~tvii~ 204 (253)
T PRK14242 190 ELIHELKA-RYTIIIV 204 (253)
T ss_pred HHHHHHhc-CCeEEEE
Confidence 88998854 6677655
No 193
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=6.9e-21 Score=165.95 Aligned_cols=129 Identities=17% Similarity=0.207 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-----CCC-----------CCCCC-C--------cccChhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-----PAA-----------ENFDY-P--------VAMDIRELI 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-----~~~-----------~~~~y-~--------~~~~i~e~i 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+ +.. ..+.| + +..++.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 4789999999999999999999999999999998865 210 12333 1 112333332
Q ss_pred -----------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 58 -----------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 58 -----------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
.+.++++.+++.+ .... ....+++++ ++.||++++. +|+++|+|||++ ||+.++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~LSgG~~qrv~laral~~--~p~vlllDEP~~~LD~~~~~ 185 (253)
T TIGR02323 110 GERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDD--LPRAFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQA 185 (253)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhc--CchhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHH
Confidence 2456677888853 2111 124455554 4899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEE
Q 025795 117 PVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v 136 (248)
.+. ++++++.+ .|.+++++
T Consensus 186 ~l~-~~l~~~~~~~~~tii~v 205 (253)
T TIGR02323 186 RLL-DLLRGLVRDLGLAVIIV 205 (253)
T ss_pred HHH-HHHHHHHHhcCCEEEEE
Confidence 999 88888765 47888766
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.2e-21 Score=167.90 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-------CcccChhhhhh---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~--- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 47899999999999999999999974 69999999876421 12222 22356666653
Q ss_pred --------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 59 --------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
++++++.+++.+. .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 111 KLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV--EPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH
Confidence 2345556666421 01111123455554 4899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++++ +.+++++ +|...+..++
T Consensus 189 -~~l~~~~~-~~tviiv----sH~~~~~~~~ 213 (258)
T PRK14241 189 -DLINELKQ-DYTIVIV----THNMQQAARV 213 (258)
T ss_pred -HHHHHHhc-CCEEEEE----ecCHHHHHHh
Confidence 88888854 5666555 4555443433
No 195
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=4e-21 Score=167.39 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+++|+|++++ +|+|.++|.+... ..+.| .+..++++++.
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~ 101 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTE 101 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcH
Confidence 47899999999999999999999864 8999999976421 11222 22345665543
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHcc-----CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDN-----YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~-----~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+++.+..... ...+++++ +++||++++. -.+|+++|+|||++ ||+.++..+. +++++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~-~~L~~ 178 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD-RLLSE 178 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 45677888886533222 23455554 4899999984 01469999999999 9999999988 99998
Q ss_pred HHhCCCeEEEEEecccccccChHHHHH
Q 025795 126 LKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.++|.+++++ +|...+...+++
T Consensus 179 ~~~~~~tvi~~----sH~~~~~~~~~d 201 (248)
T PRK03695 179 LCQQGIAVVMS----SHDLNHTLRHAD 201 (248)
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCC
Confidence 87667787665 455544444433
No 196
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.9e-22 Score=173.96 Aligned_cols=169 Identities=14% Similarity=0.181 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-----------CCCCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----------AAENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-----------~~~~~~y-------~~~~~i~e~i~------ 58 (248)
=++++.|++||||||++++|+|+.+|+.|.|.++|.-. ....++| +|.++|+.++.
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 36899999999999999999999999999999998532 2244555 45667777765
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCe
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFN 132 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ 132 (248)
.+++.+.+|+++...+...--.-.++++++|+|||.. .|+++++|||.+ ||...+++++ -.+++|.++ +..
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt--~P~LLLmDEPLaSLD~~RK~Eil-pylERL~~e~~IP 181 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLT--APELLLMDEPLASLDLPRKREIL-PYLERLRDEINIP 181 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhc--CCCeeeecCchhhcccchhhHHH-HHHHHHHHhcCCC
Confidence 6788889999988655533222223467999999999 999999999998 9999999999 889999764 777
Q ss_pred EEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccc
Q 025795 133 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 178 (248)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll 178 (248)
|+.| ||.+.+.....+.+++.-.+.++...|...|++..|..
T Consensus 182 IlYV----SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 182 ILYV----SHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred EEEE----ecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence 7666 68888888888888887788888778888888777764
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.85 E-value=4.3e-21 Score=169.06 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCC---------CCcccChhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFD---------YPVAMDIRELI------ 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~---------y~~~~~i~e~i------ 57 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+. +.+..++++++
T Consensus 39 e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999999876421 1122 22334555443
Q ss_pred -----------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 58 -----------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 58 -----------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
.++++++.+|+.+ ..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~LS~Ge~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~ 193 (268)
T PRK10419 119 LLSLDKAERLARASEMLRAVDLDDSVLDKR--PPQLSGGQLQRVCLARALAV--EPKLLILDEAVSNLDLVLQAGVI-RL 193 (268)
T ss_pred hccCCHHHHHHHHHHHHHHcCCChhHhhCC--CccCChHHHHHHHHHHHHhc--CCCEEEEeCCCcccCHHHHHHHH-HH
Confidence 1456778888863 22221 23355543 4899999999 999999999999 9999999988 88
Q ss_pred HHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795 123 VDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 123 l~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++.++ +.+++++ +|...+...+++
T Consensus 194 l~~~~~~~~~tiiiv----sH~~~~i~~~~d 220 (268)
T PRK10419 194 LKKLQQQFGTACLFI----THDLRLVERFCQ 220 (268)
T ss_pred HHHHHHHcCcEEEEE----ECCHHHHHHhCC
Confidence 8888654 7777665 455544444433
No 198
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.8e-21 Score=172.82 Aligned_cols=142 Identities=13% Similarity=0.225 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i~ 58 (248)
-+++|+||||||||||+++|+|+++ +++|+|.++|.+... ..+.| .+.+++.+++.
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~ 113 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIM 113 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHH
Confidence 4789999999999999999999997 489999999987531 12222 23345544321
Q ss_pred -----------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 59 -----------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
+.++++.+|+.+... ..+ ...+++++ +++||++++. +|+++|+||||+ ||+.++.
T Consensus 114 ~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-p~~LSgGq~QRv~iArAL~~--~P~llilDEPts~LD~~~~~ 190 (326)
T PRK11022 114 EAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY-PHQLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVTIQA 190 (326)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHH
Confidence 567788899874211 112 23466654 4899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 117 PVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 117 ~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++ ++++++++ .|.++++| +|.+.....+++
T Consensus 191 ~il-~lL~~l~~~~g~til~i----THdl~~~~~~ad 222 (326)
T PRK11022 191 QII-ELLLELQQKENMALVLI----THDLALVAEAAH 222 (326)
T ss_pred HHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 999 99999875 48888766 455544444433
No 199
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.5e-21 Score=162.15 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC------CCCCC-------CcccChhhhhhHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELISLEDVMEEL 66 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~~~~~m~~~ 66 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+... ..+.| .+..++++++.....+.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-- 111 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-- 111 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--
Confidence 4789999999999999999999999 899999999976532 12222 33467777765432111
Q ss_pred CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 67 GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 67 ~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
.. .. ...++++. ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.++ +.+++++
T Consensus 112 -~~----~~--~~~LS~Ge~qrl~laral~~--~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 112 -GN----EF--VRGISGGERKRVSIAEALVS--RASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVS 175 (202)
T ss_pred -cc----cc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 11 11 23455543 4899999999 999999999999 9999999999 888988654 5555443
No 200
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.4e-22 Score=174.91 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-Cc-------ccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV-------AMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~-------~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~ 116 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGI 116 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCC
Confidence 3689999999999999999999999999999999876531 12222 11 124554432
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++++.+|+.+..... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.
T Consensus 117 ~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~l~ 191 (280)
T PRK13633 117 PPEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAM--RPECIIFDEPTAMLDPSGRREVV-NTIKELN 191 (280)
T ss_pred CHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 45677788886543332 23455554 4899999999 999999999999 9999999999 8999986
Q ss_pred h-CCCeEEEE
Q 025795 128 S-RNFNVCAV 136 (248)
Q Consensus 128 ~-~~~~ii~v 136 (248)
+ .|.+++++
T Consensus 192 ~~~g~tillv 201 (280)
T PRK13633 192 KKYGITIILI 201 (280)
T ss_pred HhcCCEEEEE
Confidence 5 48887665
No 201
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.85 E-value=1.8e-21 Score=166.04 Aligned_cols=130 Identities=21% Similarity=0.193 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+.| + ...++.+++. +
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 110 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERI 110 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999865421 11222 1 1236666652 3
Q ss_pred HHHHHHhCCCCCCchhh---------hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGPNGGLIY---------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~~~~~~~---------~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++.+++.+...... ....+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.
T Consensus 111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~~~ 187 (220)
T cd03245 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN--DPPILLLDEPTSAMDMNSEERLK-ERLRQLL 187 (220)
T ss_pred HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 45566666643211100 012455544 4899999999 999999999999 9999999999 8888886
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+ +.+++++
T Consensus 188 ~-~~tii~~ 195 (220)
T cd03245 188 G-DKTLIII 195 (220)
T ss_pred C-CCEEEEE
Confidence 5 3666555
No 202
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.6e-21 Score=165.69 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + ...+++|++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~ 108 (234)
T cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEV 108 (234)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHH
Confidence 4689999999999999999999999999999999865421 11222 1 1246666653
Q ss_pred --------HHHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 --------~~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+ ++....... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 109 ~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~lllLDEP~~~LD~~~~~~l~-~~l~~ 183 (234)
T cd03251 109 EEAARAANAHEFIMELPEGYDTVIGER--GVKLSGGQRQRIAIARALLK--DPPILILDEATSALDTESERLVQ-AALER 183 (234)
T ss_pred HHHHHHcCcHHHHHhcccCcceeeccC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 11222222 222211111 23455543 4899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+ +.+++++
T Consensus 184 ~~~-~~tii~~ 193 (234)
T cd03251 184 LMK-NRTTFVI 193 (234)
T ss_pred hcC-CCEEEEE
Confidence 854 7777655
No 203
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.4e-21 Score=165.39 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-------CcccChhhhhh---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-------PVAMDIRELIS--- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~y-------~~~~~i~e~i~--- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...+.| .+..++.+++.
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence 47899999999999999999999987 4999999987653 112333 22356666553
Q ss_pred ---------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ---------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ---------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++.+.- ........+++++ ++.||++++. +|+++|+|||++ ||+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l 188 (253)
T PRK14267 111 KLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM--KPKILLMDEPTANIDPVGTAKI 188 (253)
T ss_pred HhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHH
Confidence 23455566664310 0111134455554 3899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
. ++++++.+ +.+++++ +|...+...+
T Consensus 189 ~-~~l~~~~~-~~tiii~----sH~~~~~~~~ 214 (253)
T PRK14267 189 E-ELLFELKK-EYTIVLV----THSPAQAARV 214 (253)
T ss_pred H-HHHHHHhh-CCEEEEE----ECCHHHHHhh
Confidence 8 88888854 5666655 4554433333
No 204
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=5.2e-21 Score=156.64 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+.... +.++ ..-...++-+ .++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--------~~~~-----~~~~~i~~~~---------qLS 84 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA--------SPRD-----ARRAGIAMVY---------QLS 84 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC--------CHHH-----HHhcCeEEEE---------ecC
Confidence 46899999999999999999999999999999998754321 0100 0000111100 033
Q ss_pred hh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++ +++.+|++++. +|+++|+|||++ ||+.+++.+. ++++++.+++.+++++
T Consensus 85 ~G~~qrl~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~ 138 (163)
T cd03216 85 VGERQMVEIARALAR--NARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFI 138 (163)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 33 34899999999 999999999999 9999999999 9999887667777665
No 205
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=6.6e-21 Score=155.28 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh-------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------- 58 (248)
.++|+||+|||||||+..++|+-.|++|+|.+.|.+... +.+..-|+++--|++.
T Consensus 38 ~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 38 TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC
Confidence 579999999999999999999999999999999977632 2222345666666653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
..++++.+||+........--.-.++++++|||+++. .|++++.||||- ||-.+-..+. +++-.+++
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~--~P~vLfADEPTGNLD~~Tg~~ia-DLlF~lnr 194 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAG--RPDVLFADEPTGNLDRATGDKIA-DLLFALNR 194 (228)
T ss_pred CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcC--CCCEEeccCCCCCcchhHHHHHH-HHHHHHhh
Confidence 6788999999976543322111223466999999999 999999999997 9999999999 88888875
Q ss_pred -CCCeEEEE
Q 025795 129 -RNFNVCAV 136 (248)
Q Consensus 129 -~~~~ii~v 136 (248)
.|.++++|
T Consensus 195 e~G~TlVlV 203 (228)
T COG4181 195 ERGTTLVLV 203 (228)
T ss_pred hcCceEEEE
Confidence 58888777
No 206
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.2e-20 Score=158.25 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCC---CCCCCC-------CcccChhhhhhHHHHHHHhCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPA---AENFDY-------PVAMDIRELISLEDVMEELGLGP 70 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~---~~~~~y-------~~~~~i~e~i~~~~~m~~~~L~~ 70 (248)
-+++|+||||||||||+++|+|.. +|++|+|.++|.+.. ...+.| .+..++++++.....++
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------ 107 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR------ 107 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHh------
Confidence 478999999999999999999986 489999999987642 112222 33457777766432211
Q ss_pred CCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 71 ~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++++ +++.||++++. +|+++|+|||++ +|+.++..+. ++++++++.+.+++++
T Consensus 108 ---------~LSgGe~qrv~la~al~~--~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiiiv 164 (192)
T cd03232 108 ---------GLSVEQRKRLTIGVELAA--KPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQAILCT 164 (192)
T ss_pred ---------cCCHHHhHHHHHHHHHhc--CCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 24443 34899999999 999999999999 9999999999 8888887667777665
No 207
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.7e-21 Score=167.53 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC--------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY--------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y--------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| .+..++.+++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~ 113 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP 113 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC
Confidence 3689999999999999999999999999999999876531 12222 11235666553
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++++.+|+.+..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~lAraL~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~ 188 (277)
T PRK13642 114 REEMIKRVDEALLAVNMLDFKTRE--PARLSGGQKQRVAVAGIIAL--RPEIIILDESTSMLDPTGRQEIM-RVIHEIKE 188 (277)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34566777776442222 23455543 4899999999 999999999999 9999999999 88888876
Q ss_pred C-CCeEEEE
Q 025795 129 R-NFNVCAV 136 (248)
Q Consensus 129 ~-~~~ii~v 136 (248)
+ |.+++++
T Consensus 189 ~~g~tiil~ 197 (277)
T PRK13642 189 KYQLTVLSI 197 (277)
T ss_pred hcCCEEEEE
Confidence 4 7887665
No 208
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.7e-21 Score=167.83 Aligned_cols=130 Identities=19% Similarity=0.257 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 113 (254)
T PRK14273 34 SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPK 113 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHH
Confidence 46899999999999999999999987 4899999987542 112333 11 256666553
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+. .........+++++ +++||++++. +|+++|+||||+ ||+.++..++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (254)
T PRK14273 114 IHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI--EPNVILMDEPTSALDPISTGKIE- 190 (254)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-
Confidence 2334455555311 00111123455544 4899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++++ +.+++++
T Consensus 191 ~~l~~~~~-~~tvii~ 205 (254)
T PRK14273 191 ELIINLKE-SYTIIIV 205 (254)
T ss_pred HHHHHHhc-CCEEEEE
Confidence 88999854 6676555
No 209
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.9e-21 Score=172.18 Aligned_cols=142 Identities=15% Similarity=0.249 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC----CCCceEEEeccCCCC-----------CCCCC---------CcccChhhhh-
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE----TVRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~----~~~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i- 57 (248)
-+++|+|+||||||||+++|+|+++ +++|+|.++|.+... ..+.| .+..++.+++
T Consensus 34 e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~ 113 (330)
T PRK15093 34 EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLM 113 (330)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHH
Confidence 4689999999999999999999986 588999999976521 12322 2223443332
Q ss_pred ---------------------hHHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795 58 ---------------------SLEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (248)
Q Consensus 58 ---------------------~~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD 111 (248)
.+.++++.+||.+... ..+ ...+++++ +++||++|+. +|+++|+||||+ ||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-p~~LSgG~~QRv~iArAL~~--~P~llilDEPts~LD 190 (330)
T PRK15093 114 QNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF-PYELTEGECQKVMIAIALAN--QPRLLIADEPTNAME 190 (330)
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC-chhCCHHHHHHHHHHHHHHC--CCCEEEEeCCCCcCC
Confidence 2456788888875311 111 23455554 4899999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 112 LFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 112 ~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.++..++ ++++++++ .|.++++| +|.+.....+++
T Consensus 191 ~~~~~~i~-~lL~~l~~~~g~tii~i----tHdl~~v~~~~d 227 (330)
T PRK15093 191 PTTQAQIF-RLLTRLNQNNNTTILLI----SHDLQMLSQWAD 227 (330)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 99999999 99999876 48888766 465554444443
No 210
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.3e-21 Score=187.16 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------CCCCC---------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------ENFDY---------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------~~~~y---------~~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... ..+.| .+.+++.+++.
T Consensus 351 e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999875421 12222 23456665542
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+|+.+.....+ ...+++++ +++||++++. +|++||+||||+ ||+.++..++ +++
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-~~~LSgGqrQRv~iAraL~~--~p~llllDEPts~LD~~~~~~i~-~ll 506 (623)
T PRK10261 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRY-PHEFSGGQRQRICIARALAL--NPKVIIADEAVSALDVSIRGQII-NLL 506 (623)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 456788888863211112 24566654 4899999999 999999999999 9999999999 999
Q ss_pred HHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795 124 DHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 124 ~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++ |.++++| +|.+.....+++
T Consensus 507 ~~l~~~~g~tvi~i----sHdl~~v~~~~d 532 (623)
T PRK10261 507 LDLQRDFGIAYLFI----SHDMAVVERISH 532 (623)
T ss_pred HHHHHhcCCEEEEE----eCCHHHHHHhCC
Confidence 998764 7888766 465554444443
No 211
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.4e-20 Score=164.78 Aligned_cols=140 Identities=19% Similarity=0.308 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 39 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (258)
T PRK14268 39 SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPR 118 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999999875 7999999886542 112333 11 246666553
Q ss_pred ------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+++.+. .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~ 195 (258)
T PRK14268 119 IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV--KPKIILFDEPTSALDPISTARIE-D 195 (258)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcccCHHHHHHHH-H
Confidence 2446677776321 00111234455554 4899999999 999999999999 9999999998 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+++++.+ +.+++++ +|...+...+
T Consensus 196 ~l~~l~~-~~tiiiv----sH~~~~~~~~ 219 (258)
T PRK14268 196 LIMNLKK-DYTIVIV----THNMQQAARI 219 (258)
T ss_pred HHHHHhh-CCEEEEE----ECCHHHHHHh
Confidence 8888854 6777655 4555433333
No 212
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=7.9e-21 Score=166.40 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC-------C--CCCC-------Ccc---cC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------E--NFDY-------PVA---MD 52 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-----------i~~~d~~~-------~--~~~y-------~~~---~~ 52 (248)
-+++|+||||||||||+++|+|+++|++|+|. +.|.+... . .+.| .+. -+
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 106 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGK 106 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHH
Confidence 36899999999999999999999999999996 55655421 0 0111 110 01
Q ss_pred hhhhh-------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 53 IRELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 53 i~e~i-------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.+++ .+.++++.+|+.+..... ...+++++ ++.+|++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 107 i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~--~p~illlDEPts~LD~~~~~~l~-~~ 181 (255)
T cd03236 107 VGELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALAR--DADFYFFDEPSSYLDIKQRLNAA-RL 181 (255)
T ss_pred HHHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 11111 267888899987543222 23455543 4899999999 999999999999 9999999998 99
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++++.+++++ +|.......+++
T Consensus 182 l~~l~~~~~tIIii----SHd~~~~~~~ad 207 (255)
T cd03236 182 IRELAEDDNYVLVV----EHDLAVLDYLSD 207 (255)
T ss_pred HHHHHhcCCEEEEE----ECCHHHHHHhCC
Confidence 99987667777665 354443333333
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.85 E-value=7.8e-21 Score=180.78 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 28 e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 107 (500)
T TIGR02633 28 ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITL 107 (500)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccc
Confidence 47899999999999999999999987 79999999865421 12333 22345544432
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
++++++.+++.+..... ....+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgG~~qrv~iA~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 183 (500)
T TIGR02633 108 PGGRMAYNAMYLRAKNLLRELQLDADNVTR-PVGDYGGGQQQLVEIAKALNK--QARLLILDEPSSSLTEKETEILL-DI 183 (500)
T ss_pred cccccCHHHHHHHHHHHHHHcCCCCCcccC-chhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 45677788886532111 134566654 4899999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCeEEEE
Q 025795 123 VDHLKSRNFNVCAV 136 (248)
Q Consensus 123 l~~l~~~~~~ii~v 136 (248)
++++++.|.+++++
T Consensus 184 l~~l~~~g~tviii 197 (500)
T TIGR02633 184 IRDLKAHGVACVYI 197 (500)
T ss_pred HHHHHhCCCEEEEE
Confidence 99987778787665
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.85 E-value=9.5e-21 Score=164.87 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC------C--CCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA------E--NFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~------~--~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+ ++|++|+|.+.|.+... . .+.| .+..++.+++.
T Consensus 34 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~ 113 (252)
T CHL00131 34 EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKR 113 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhh
Confidence 47899999999999999999998 57999999998865421 1 1111 11223333321
Q ss_pred ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++.+ ...... .+.+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l 190 (252)
T CHL00131 114 KFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-NEGFSGGEKKRNEILQMALL--DSELAILDETDSGLDIDALKII 190 (252)
T ss_pred cccccccccHHHHHHHHHHHHHHcCCchhhhcccc-ccCCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHH
Confidence 345677778763 211111 12255554 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025795 119 LRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (248)
. ++++++.+.|.+++++
T Consensus 191 ~-~~l~~~~~~g~tii~~ 207 (252)
T CHL00131 191 A-EGINKLMTSENSIILI 207 (252)
T ss_pred H-HHHHHHHhCCCEEEEE
Confidence 9 8898887667787665
No 215
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.85 E-value=1.2e-20 Score=162.91 Aligned_cols=130 Identities=17% Similarity=0.142 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhhH----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELISL---------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~~---------- 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + ...++++++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 108 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERV 108 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHH
Confidence 4689999999999999999999999999999999876421 11222 1 12466665531
Q ss_pred HHHHHHhCCCC---------CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGP---------NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~---------~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.+.++..++.. ..........+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.
T Consensus 109 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 185 (237)
T cd03252 109 IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH--NPRILIFDEATSALDYESEHAIM-RNMHDIC 185 (237)
T ss_pred HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 11222222211 000001123455554 3899999999 999999999999 9999999999 8888885
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+ |.+++++
T Consensus 186 ~-~~tiii~ 193 (237)
T cd03252 186 A-GRTVIII 193 (237)
T ss_pred C-CCEEEEE
Confidence 4 7777655
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.85 E-value=7.2e-21 Score=181.03 Aligned_cols=141 Identities=14% Similarity=0.205 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC--------CCCCC----------CcccChhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELI------ 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i------ 57 (248)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.++.. ..+.| .+.+++++++
T Consensus 287 e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~ 366 (500)
T TIGR02633 287 EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK 366 (500)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence 47899999999999999999999995 89999998865421 11222 2223343332
Q ss_pred ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 58 ---------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
.++++++.+++.. ..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP--IGRLSGGNQQKAVLAKMLLT--NPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc--cccCCHHHHHHHHHHHHHhh--CCCEEEEcCCCCCcCHhHHHHH
Confidence 1456778888853 22222 24566654 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+ ++++++++.|.+++++ +|.......+++
T Consensus 443 ~-~~l~~l~~~g~tviiv----sHd~~~~~~~~d 471 (500)
T TIGR02633 443 Y-KLINQLAQEGVAIIVV----SSELAEVLGLSD 471 (500)
T ss_pred H-HHHHHHHhCCCEEEEE----CCCHHHHHHhCC
Confidence 9 8999997778887665 566655555544
No 217
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.85 E-value=9.6e-21 Score=171.65 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC-----------CCCCC---------CcccChhhhhh-
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELIS- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i~- 58 (248)
-+++|+|+||||||||+++|+|+++|. +|+|.++|.+... ..+.| .+.+++.+++.
T Consensus 43 e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 122 (330)
T PRK09473 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122 (330)
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHH
Confidence 478999999999999999999999986 9999999987521 12322 23355555431
Q ss_pred ----------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795 59 ----------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (248)
Q Consensus 59 ----------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (248)
+.++++.+++.+... ..+ ...+++++ +++||++++. +|+++|+||||+ ||..++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-p~~LSgG~~QRv~IArAL~~--~P~llilDEPts~LD~~~~~~ 199 (330)
T PRK09473 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY-PHEFSGGMRQRVMIAMALLC--RPKLLIADEPTTALDVTVQAQ 199 (330)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC-cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHH
Confidence 456778888864211 112 23456654 4999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhC-CCeEEEE
Q 025795 118 VLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 118 ~~~~ll~~l~~~-~~~ii~v 136 (248)
++ +++++++++ |.++++|
T Consensus 200 i~-~lL~~l~~~~g~til~i 218 (330)
T PRK09473 200 IM-TLLNELKREFNTAIIMI 218 (330)
T ss_pred HH-HHHHHHHHHcCCEEEEE
Confidence 99 999998764 8888766
No 218
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.84 E-value=7.7e-21 Score=157.91 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCC-cccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYP-VAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~-~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++ .|. +... +
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-----~~~~q~~~----------------------------L 72 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----VYKPQYID----------------------------L 72 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-----EEEcccCC----------------------------C
Confidence 47899999999999999999999999999999988542 231 1100 3
Q ss_pred hh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC-CeEEEE
Q 025795 82 ED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN-FNVCAV 136 (248)
Q Consensus 82 ~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~-~~ii~v 136 (248)
++ ++++.+|++++. +|+++++|||++ ||+.++..+. ++++++.+++ .+++++
T Consensus 73 SgGq~qrv~laral~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~~~~tiiiv 128 (177)
T cd03222 73 SGGELQRVAIAAALLR--NATFYLFDEPSAYLDIEQRLNAA-RAIRRLSEEGKKTALVV 128 (177)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEE
Confidence 33 344899999999 999999999999 9999999998 8888886654 677655
No 219
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=2.3e-21 Score=185.30 Aligned_cols=143 Identities=14% Similarity=0.113 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-ccC---CC----------CCCCCC-------CcccChhhhhh---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLD---PA----------AENFDY-------PVAMDIRELIS--- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~-~~d---~~----------~~~~~y-------~~~~~i~e~i~--- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+. |.+ +. ...++| .+.+++++++.
T Consensus 311 e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 3689999999999999999999999999999995 421 10 112333 23457776663
Q ss_pred ------------HHHHHHHhCCCCCC---chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNG---GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~---~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.. ........+++++ +++||++++. +|+++|+||||+ ||+.+++.+.
T Consensus 391 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lLllDEPt~~LD~~~~~~l~- 467 (520)
T TIGR03269 391 GLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK--EPRIVILDEPTGTMDPITKVDVT- 467 (520)
T ss_pred HcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 34567788886410 0111235566664 4899999999 999999999999 9999999999
Q ss_pred HHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++.+ .|.+++++ +|.......+++
T Consensus 468 ~~l~~l~~~~g~tvi~v----sHd~~~~~~~~d 496 (520)
T TIGR03269 468 HSILKAREEMEQTFIIV----SHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHcCcEEEEE----eCCHHHHHHhCC
Confidence 88888865 47887666 465554444443
No 220
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=3.1e-21 Score=165.01 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCcccChhhhhh----------------HHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS----------------LEDVME 64 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~~~~~y~~~~~i~e~i~----------------~~~~m~ 64 (248)
-.+||+|+||||||||+|+|+|.++|++|+|.+.|.-. -....++.|++|.||++. ++++.+
T Consensus 54 e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIie 133 (249)
T COG1134 54 ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIE 133 (249)
T ss_pred CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999998532 234567788999999986 677777
Q ss_pred HhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccc
Q 025795 65 ELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 143 (248)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~ 143 (248)
.-+||+..... ...++.++...||-+++...+|++||+||-.+ -|..-++... +.++++.+++.++++| ||.
T Consensus 134 FaELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~-~rl~e~~~~~~tiv~V----SHd 206 (249)
T COG1134 134 FAELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL-ERLNELVEKNKTIVLV----SHD 206 (249)
T ss_pred HHHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH-HHHHHHHHcCCEEEEE----ECC
Confidence 77888765444 45677777666666665555999999999999 9999888888 7788886667777766 566
Q ss_pred ccChHHHHHHH
Q 025795 144 ITDVTKFISGC 154 (248)
Q Consensus 144 ~~d~~~~~s~~ 154 (248)
..-..++|+.+
T Consensus 207 ~~~I~~~Cd~~ 217 (249)
T COG1134 207 LGAIKQYCDRA 217 (249)
T ss_pred HHHHHHhcCee
Confidence 66666666643
No 221
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.5e-21 Score=165.93 Aligned_cols=140 Identities=18% Similarity=0.229 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 119 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhhHh
Confidence 4689999999999999999999986 479999999876521 12323 11 246665543
Q ss_pred -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.. . .......+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 196 (260)
T PRK10744 120 LFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI--RPEVLLLDEPCSALDPISTGRIE- 196 (260)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 34566777764310 0 011123455543 4899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|...+...+
T Consensus 197 ~~L~~~~~-~~tiii~----sH~~~~~~~~ 221 (260)
T PRK10744 197 ELITELKQ-DYTVVIV----THNMQQAARC 221 (260)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHh
Confidence 88888854 6666554 4554433333
No 222
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=164.50 Aligned_cols=142 Identities=18% Similarity=0.282 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-------CcccChhhhhh---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-------PVAMDIRELIS--- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~--- 58 (248)
-+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. ..+.| .+..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (252)
T PRK14256 31 SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHH
Confidence 3689999999999999999999986 3 58999999976521 11222 22356666553
Q ss_pred --------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
+.++++.+++.... ........+++++ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~p~llllDEP~~gLD~~~~~~l~ 188 (252)
T PRK14256 111 KLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV--KPEVILMDEPASALDPISTLKIE 188 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH
Confidence 23455566764310 0001123455544 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++.+ +.+++++ +|...+...+++
T Consensus 189 -~~l~~~~~-~~tiiiv----sH~~~~~~~~~d 215 (252)
T PRK14256 189 -ELIEELKE-KYTIIIV----THNMQQAARVSD 215 (252)
T ss_pred -HHHHHHHh-CCcEEEE----ECCHHHHHhhCC
Confidence 88999865 5666555 455544444433
No 223
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=7.6e-21 Score=182.10 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-----------CCCCC-Cc--------ccChhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENFDY-PV--------AMDIRELI 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~~y-~~--------~~~i~e~i 57 (248)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.++.. ..++| ++ ..++++++
T Consensus 36 e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~ 115 (529)
T PRK15134 36 ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL 115 (529)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHH
Confidence 46899999999999999999999986 79999998876421 12333 11 12333322
Q ss_pred -----------------hHHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 58 -----------------SLEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 58 -----------------~~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
.++++++.+|+.+.. ........+++++ +++||++++. +|+++|+||||+ ||+.++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~--~p~llllDEPt~~LD~~~~~ 193 (529)
T PRK15134 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT--RPELLIADEPTTALDVSVQA 193 (529)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCccCHHHHH
Confidence 145678888886421 0111234566654 4899999999 999999999999 9999999
Q ss_pred HHHHHHHHHHHhC-CCeEEEE
Q 025795 117 PVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 117 ~~~~~ll~~l~~~-~~~ii~v 136 (248)
.+. +++++++++ |.++++|
T Consensus 194 ~l~-~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 194 QIL-QLLRELQQELNMGLLFI 213 (529)
T ss_pred HHH-HHHHHHHHhcCCeEEEE
Confidence 999 999998754 7887666
No 224
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.84 E-value=8.6e-21 Score=163.80 Aligned_cols=128 Identities=17% Similarity=0.168 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhhH----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELISL---------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~~---------- 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEV 109 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHH
Confidence 4789999999999999999999999999999999865421 12333 11 2366665531
Q ss_pred HHHHHHhCCC-----------CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 60 EDVMEELGLG-----------PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 60 ~~~m~~~~L~-----------~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
.+.++..++. ...... ...+++++ ++.||++++. +|+++|+|||++ ||+.++..+. +++++
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~LS~G~~qrv~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~ 184 (238)
T cd03249 110 EEAAKKANIHDFIMSLPDGYDTLVGER--GSQLSGGQKQRIAIARALLR--NPKILLLDEATSALDAESEKLVQ-EALDR 184 (238)
T ss_pred HHHHHHcChHHHHHhhccccceeeccC--CccCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 1122222221 111111 12355543 3899999999 999999999999 9999999998 88888
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+. +|.+++++
T Consensus 185 ~~-~g~~vi~~ 194 (238)
T cd03249 185 AM-KGRTTIVI 194 (238)
T ss_pred hc-CCCEEEEE
Confidence 86 67777655
No 225
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.6e-20 Score=154.69 Aligned_cols=112 Identities=22% Similarity=0.274 Sum_probs=81.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-CcccChhhhhhHHHHHHHhCCCCCCch
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~ 74 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.++.. ..+.| +++..+.+ .++.+.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------- 96 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----------- 96 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence 4689999999999999999999999999999999876431 11222 11111111 0111111
Q ss_pred hhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 75 IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 75 ~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++ +++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+ +.+++++
T Consensus 97 ------LS~G~~~rl~la~al~~--~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tii~~ 151 (171)
T cd03228 97 ------LSGGQRQRIAIARALLR--DPPILILDEATSALDPETEALIL-EALRALAK-GKTVIVI 151 (171)
T ss_pred ------hCHHHHHHHHHHHHHhc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCEEEEE
Confidence 3333 44899999999 999999999999 9999999998 88888854 6666555
No 226
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.7e-20 Score=160.90 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.++.. ..+.| ++ ..++++++. +
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~ 109 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEV 109 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999865421 22333 11 125555543 2
Q ss_pred HHHHHHhCCCCCCc---------hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~~~~---------~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++.+++.+... .......+++++ ++.||++++. +|+++|+|||++ ||+.++..++ ++++++.
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 186 (229)
T cd03254 110 IEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR--DPKILILDEATSNIDTETEKLIQ-EALEKLM 186 (229)
T ss_pred HHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhc
Confidence 23333333321100 000012355543 4899999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
++.+++++
T Consensus 187 -~~~tii~~ 194 (229)
T cd03254 187 -KGRTSIII 194 (229)
T ss_pred -CCCEEEEE
Confidence 47777655
No 227
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.6e-21 Score=187.69 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---------------------CCCCCCC---------CcccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---------------------AAENFDY---------PVAMD 52 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---------------------~~~~~~y---------~~~~~ 52 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+. ....++| .+.++
T Consensus 43 e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 46899999999999999999999999999999876411 0012222 23467
Q ss_pred hhhhhh-----------------HHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795 53 IRELIS-----------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IE 111 (248)
Q Consensus 53 i~e~i~-----------------~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD 111 (248)
+++++. +.++++.+|+.+.. ........+++++ +++||++++. +|++||+||||+ ||
T Consensus 123 v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~--~P~lLllDEPt~~LD 200 (623)
T PRK10261 123 VGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC--RPAVLIADEPTTALD 200 (623)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccC
Confidence 777653 34567788885311 1111134566664 4899999999 999999999999 99
Q ss_pred HHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHHHHHHH
Q 025795 112 LFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
+.++..+. ++++++.++ |.++++| +|.+.....+++.++.
T Consensus 201 ~~~~~~l~-~ll~~l~~~~g~tvi~i----tHdl~~~~~~adri~v 241 (623)
T PRK10261 201 VTIQAQIL-QLIKVLQKEMSMGVIFI----THDMGVVAEIADRVLV 241 (623)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEE----cCCHHHHHHhCCEEEE
Confidence 99999999 999999754 8888766 4555555555554433
No 228
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=1.1e-20 Score=200.72 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=113.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-++||+|||||||||++|+|+|+++|++|+|.+.|.++.. +.++| .+.++++|++.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999999999999999999987631 22333 33578888764
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+++.+..... ...+++|+ ++.+|++++. +|+++|+||||+ ||+.+++.++ +++++++++|
T Consensus 2046 ~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~--~P~VLLLDEPTsGLDp~sr~~l~-~lL~~l~~~g 2120 (2272)
T TIGR01257 2046 EIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIG--CPPLVLLDEPTTGMDPQARRMLW-NTIVSIIREG 2120 (2272)
T ss_pred HHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCC
Confidence 34567788887654333 34566654 3889999999 999999999999 9999999999 9999987778
Q ss_pred CeEEEEEecccccccChHHHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
.+++++ +|.+.+...+|+.++.
T Consensus 2121 ~TIILt----TH~mee~e~lcDrV~I 2142 (2272)
T TIGR01257 2121 RAVVLT----SHSMEECEALCTRLAI 2142 (2272)
T ss_pred CEEEEE----eCCHHHHHHhCCEEEE
Confidence 887655 6777777777665544
No 229
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.1e-20 Score=162.70 Aligned_cols=140 Identities=14% Similarity=0.240 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14251 31 ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHH
Confidence 4689999999999999999999987 479999999976421 12222 11 246666654
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++... .........+++++ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14251 111 IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAV--RPKVVLLDEPTSALDPISSSEIE- 187 (251)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhc--CCCEEEecCCCccCCHHHHHHHH-
Confidence 2334555666311 00111234455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|...+...+
T Consensus 188 ~~l~~~~~-~~tiiii----sH~~~~~~~~ 212 (251)
T PRK14251 188 ETLMELKH-QYTFIMV----THNLQQAGRI 212 (251)
T ss_pred HHHHHHHc-CCeEEEE----ECCHHHHHhh
Confidence 88888854 5676655 4555443333
No 230
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.4e-20 Score=165.89 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 40 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 119 (269)
T PRK14259 40 KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGAR 119 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhhhhh
Confidence 4689999999999999999999987 589999999876421 12333 11 126666553
Q ss_pred -----------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -----------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+++... .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~gLD~~~~~~l~-~~ 196 (269)
T PRK14259 120 INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI--EPEVILMDEPCSALDPISTLKIE-ET 196 (269)
T ss_pred hcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HH
Confidence 2334556665321 00011123455554 3899999999 999999999999 9999999998 88
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
++++++ +.+++++ +|...+...++
T Consensus 197 l~~~~~-~~tiiiv----tH~~~~~~~~~ 220 (269)
T PRK14259 197 MHELKK-NFTIVIV----THNMQQAVRVS 220 (269)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHhc
Confidence 888854 6666555 45554444443
No 231
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-20 Score=162.11 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~ 108 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM 108 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc
Confidence 4689999999999999999999974 689999999876531 12233 11 136666552
Q ss_pred ----------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++++.+++.+.- . .......+++++ ++++|++++. +|+++|+|||++ ||+.++..+. +++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~~LD~~~~~~l~-~~l 185 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI--KPKLLLLDEPTSALDPISSGVIE-ELL 185 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 34567777885310 0 001123455544 4899999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEE
Q 025795 124 DHLKSRNFNVCAV 136 (248)
Q Consensus 124 ~~l~~~~~~ii~v 136 (248)
+++.+ +.+++++
T Consensus 186 ~~~~~-~~tiii~ 197 (246)
T PRK14269 186 KELSH-NLSMIMV 197 (246)
T ss_pred HHHhC-CCEEEEE
Confidence 88854 7777655
No 232
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=165.05 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 46 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 125 (267)
T PRK14235 46 TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPR 125 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHH
Confidence 47899999999999999999999975 89999999876421 12333 11 125666553
Q ss_pred --------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
+.++++.+++.+.- ........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~ 203 (267)
T PRK14235 126 IHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV--SPEVILMDEPCSALDPIATAKVE 203 (267)
T ss_pred hcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH
Confidence 23456667774310 0001123455543 4899999999 999999999999 9999999998
Q ss_pred HHHHHHHHhCCCeEEEE
Q 025795 120 RNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 204 -~~L~~l~~-~~tiiiv 218 (267)
T PRK14235 204 -ELIDELRQ-NYTIVIV 218 (267)
T ss_pred -HHHHHHhc-CCeEEEE
Confidence 88888855 6666555
No 233
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3e-20 Score=158.98 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=101.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC--------CCCC---------Cc------------------
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE--------NFDY---------PV------------------ 49 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~--------~~~y---------~~------------------ 49 (248)
-+|+||||||||||+++++|...|++|.+.+.|...... .+++ .+
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~ 139 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccc
Confidence 379999999999999999999999999999998655331 1111 11
Q ss_pred ---ccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 50 ---AMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 50 ---~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
..|-.+.-.+..+++.+|+....++.++ .++.+ .++.||||++. +|++||||||++ ||+..+..+. +.+
T Consensus 140 y~~~~~~~~~~~a~~lle~~g~~~la~r~~~--~LS~Ge~rrvLiaRALv~--~P~LLiLDEP~~GLDl~~re~ll-~~l 214 (257)
T COG1119 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFG--SLSQGEQRRVLIARALVK--DPELLILDEPAQGLDLIAREQLL-NRL 214 (257)
T ss_pred cccCCCHHHHHHHHHHHHHcchhhhccCchh--hcCHhHHHHHHHHHHHhc--CCCEEEecCccccCChHHHHHHH-HHH
Confidence 2222222337788999999887777654 45554 34899999999 999999999999 9999999998 778
Q ss_pred HHHHhC--CCeEEEEEecccccccChH
Q 025795 124 DHLKSR--NFNVCAVYLLDSQFITDVT 148 (248)
Q Consensus 124 ~~l~~~--~~~ii~v~l~d~~~~~d~~ 148 (248)
.++... +.++++| +|+..|..
T Consensus 215 ~~~~~~~~~~~ll~V----tHh~eEi~ 237 (257)
T COG1119 215 EELAASPGAPALLFV----THHAEEIP 237 (257)
T ss_pred HHHhcCCCCceEEEE----Ecchhhcc
Confidence 887643 5667666 56665544
No 234
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.6e-20 Score=160.49 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+.| ....++++++. +
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~ 107 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEV 107 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHH
Confidence 4689999999999999999999999999999998865421 11222 11246666553 1
Q ss_pred HHHHHHhCCCCC------C--c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGPN------G--G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~~------~--~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.+.++..++.+. + . .......+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++++++.
T Consensus 108 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~ 184 (236)
T cd03253 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK--NPPILLLDEATSALDTHTEREIQ-AALRDVS 184 (236)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc
Confidence 222222222110 0 0 000012355543 4899999999 999999999999 9999999998 8888886
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+ |.+++++
T Consensus 185 ~-~~tiii~ 192 (236)
T cd03253 185 K-GRTTIVI 192 (236)
T ss_pred C-CCEEEEE
Confidence 6 7777655
No 235
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=1.1e-20 Score=182.92 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCcccChhhhhh-----------HHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS-----------LEDVMEELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~~~~~y~~~~~i~e~i~-----------~~~~m~~~~L~ 69 (248)
-+++|+||||||||||+++|+|+++|++|+|.+. ... ..+.....+..++++++. +.++++.+++.
T Consensus 366 eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~ 444 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH
Confidence 4789999999999999999999999999999874 211 112222234567777654 35678888886
Q ss_pred CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccccc
Q 025795 70 PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFIT 145 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~ 145 (248)
+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++++| +|...
T Consensus 445 ~~~~~~--~~~LSGGe~QRvaiAraL~~--~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv----sHD~~ 515 (590)
T PRK13409 445 RLLDKN--VKDLSGGELQRVAIAACLSR--DADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVV----DHDIY 515 (590)
T ss_pred HHHhCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCHH
Confidence 433222 34566654 4899999999 999999999999 9999999999 99999875 47787666 45554
Q ss_pred ChHHHHH
Q 025795 146 DVTKFIS 152 (248)
Q Consensus 146 d~~~~~s 152 (248)
....+++
T Consensus 516 ~~~~~aD 522 (590)
T PRK13409 516 MIDYISD 522 (590)
T ss_pred HHHHhCC
Confidence 4444433
No 236
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-20 Score=162.62 Aligned_cols=140 Identities=16% Similarity=0.271 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14270 31 KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHhHHH
Confidence 47899999999999999999999875 78999999876521 11222 11 246666553
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+. .........+++++ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 187 (251)
T PRK14270 111 IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV--KPDVILMDEPTSALDPISTLKIE- 187 (251)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2345666666321 00011123455544 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|...+...+
T Consensus 188 ~~L~~~~~-~~tiiiv----sH~~~~~~~~ 212 (251)
T PRK14270 188 DLMVELKK-EYTIVIV----THNMQQASRV 212 (251)
T ss_pred HHHHHHHh-CCeEEEE----EcCHHHHHHh
Confidence 88888865 5666555 4555433333
No 237
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=1.3e-20 Score=180.21 Aligned_cols=129 Identities=16% Similarity=0.082 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEe-----------------------ccCC-------C---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIV-----------------------NLDP-------A--------- 41 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~-----------------------~~d~-------~--------- 41 (248)
-+++|+||||||||||+++|+|++ +|++|+|.+. |.+. .
T Consensus 27 e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 106 (520)
T TIGR03269 27 EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRR 106 (520)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHH
Confidence 468999999999999999999997 7999999986 2111 0
Q ss_pred -CCCCCC--------CcccChhhhhh----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHc
Q 025795 42 -AENFDY--------PVAMDIRELIS----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELD 94 (248)
Q Consensus 42 -~~~~~y--------~~~~~i~e~i~----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~ 94 (248)
...+.| .+..++++++. +.++++.+|+.+..... ...+++++ +++||++++
T Consensus 107 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~iA~al~ 184 (520)
T TIGR03269 107 IRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLA 184 (520)
T ss_pred hhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC--cccCCHHHHHHHHHHHHHh
Confidence 011222 22346666553 45678888886543222 34566664 489999999
Q ss_pred cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 95 NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 95 ~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
. +|+++|+||||+ ||+.++..+. ++++++.+ .|.++++|
T Consensus 185 ~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 185 K--EPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLT 225 (520)
T ss_pred c--CCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEE
Confidence 9 999999999999 9999999999 88999865 47887766
No 238
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=162.13 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-C-----cccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-P-----VAMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~-----~~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ..+.| + ...++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~ 109 (250)
T PRK14262 30 QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999999874 89999999866421 12222 1 1246666554
Q ss_pred -------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.-. .......+++++ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14262 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV--EPEVILLDEPTSALDPIATQRIE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-
Confidence 223455566643100 011123455543 4899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 187 ~~l~~~~~-~~tili~ 201 (250)
T PRK14262 187 KLLEELSE-NYTIVIV 201 (250)
T ss_pred HHHHHHhc-CcEEEEE
Confidence 88888864 6666555
No 239
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.6e-20 Score=162.08 Aligned_cols=140 Identities=18% Similarity=0.260 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC---CCC--CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH---CET--VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~---l~~--~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+ .++ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~ 109 (250)
T PRK14245 30 SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999997 454 58999999876421 12333 11 135555543
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.- ........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 186 (250)
T PRK14245 110 VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV--SPSVLLMDEPASALDPISTAKVE- 186 (250)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 34556667774311 1111123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++. ++.+++++ +|...+...+
T Consensus 187 ~~l~~~~-~~~tiiiv----tH~~~~~~~~ 211 (250)
T PRK14245 187 ELIHELK-KDYTIVIV----THNMQQAARV 211 (250)
T ss_pred HHHHHHh-cCCeEEEE----eCCHHHHHhh
Confidence 8888885 46676655 4554433333
No 240
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.83 E-value=2e-20 Score=160.33 Aligned_cols=128 Identities=17% Similarity=0.187 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 41 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~ 120 (226)
T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV 120 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHH
Confidence 4689999999999999999999999999999999865421 11222 11 124554442
Q ss_pred --------HHHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 --------LEDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 --------~~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+ |+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 121 ~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgG~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~-~~l~~ 195 (226)
T cd03248 121 KEAAQKAHAHSFISELASGYDTEVGEK--GSQLSGGQKQRVAIARALIR--NPQVLILDEATSALDAESEQQVQ-QALYD 195 (226)
T ss_pred HHHHHHcCcHHHHHhccccccchhhcC--CCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 23445555 454332221 23455543 4899999999 999999999999 9999999988 88888
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+ +.+++++
T Consensus 196 ~~~-~~tii~~ 205 (226)
T cd03248 196 WPE-RRTVLVI 205 (226)
T ss_pred HcC-CCEEEEE
Confidence 854 5666555
No 241
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.1e-20 Score=164.49 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 127 (268)
T PRK14248 48 AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALK 127 (268)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 4689999999999999999999864 689999999876421 12333 11 125666543
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++... .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 204 (268)
T PRK14248 128 YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM--KPAVLLLDEPASALDPISNAKIE- 204 (268)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC--CCCEEEEcCCCcccCHHHHHHHH-
Confidence 2234445555321 00111123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 205 ~~l~~~~~-~~tiii~ 219 (268)
T PRK14248 205 ELITELKE-EYSIIIV 219 (268)
T ss_pred HHHHHHhc-CCEEEEE
Confidence 88998854 5666554
No 242
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-20 Score=154.82 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=102.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---C------CCCCCCcccChhhhhh----------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---A------ENFDYPVAMDIRELIS---------------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~---~------~~~~y~~~~~i~e~i~---------------- 58 (248)
.++++||+||||||++++++|+.+|..|+|.++|.... . ++-...|.+++.|++.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 57899999999999999999999999999999997542 1 3334456678888875
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
+.+.+..+||+...... . -.++++++ +-+||+++. +|+++++|||+. +|..+++.+..-++.-+++.|+.+++
T Consensus 113 a~q~l~~VgL~~~~~~~-i-~qLSGGmrQRvGiARALa~--eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll 188 (259)
T COG4525 113 AHQMLALVGLEGAEHKY-I-WQLSGGMRQRVGIARALAV--EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188 (259)
T ss_pred HHHHHHHhCcccccccc-e-EeecchHHHHHHHHHHhhc--CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 67788899998776332 2 24666654 889999999 999999999998 99999999883444445566887766
Q ss_pred E
Q 025795 136 V 136 (248)
Q Consensus 136 v 136 (248)
|
T Consensus 189 i 189 (259)
T COG4525 189 I 189 (259)
T ss_pred E
Confidence 5
No 243
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=178.32 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhh-----h--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIREL-----I-- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~-----i-- 57 (248)
-+++|+||||||||||+++|+|+.+|++|+|.+.|.++.. ..++| .++.++.++ +
T Consensus 275 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 4789999999999999999999999999999999866531 11222 112232221 1
Q ss_pred ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 58 ---------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
.+.++++.++++. ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~illLDEPt~gLD~~~~~~~ 430 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ--IGSLSGGNQQKVIIGRWLLT--QPEILMLDEPTRGIDVGAKFEI 430 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCcccc--cccCCcHHHHHHHHHHHHhc--CCCEEEEcCCCcccChhHHHHH
Confidence 1456677777752 22222 34566654 4899999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 119 LRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+ ++++++.+.|.+++++ +|...+...+++
T Consensus 431 ~-~~l~~l~~~~~tvi~v----sHd~~~~~~~~d 459 (491)
T PRK10982 431 Y-QLIAELAKKDKGIIII----SSEMPELLGITD 459 (491)
T ss_pred H-HHHHHHHHCCCEEEEE----CCChHHHHhhCC
Confidence 9 8999987778888766 576665555544
No 244
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=163.22 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|.++ | ++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 39 e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 118 (259)
T PRK14274 39 EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR 118 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHH
Confidence 3689999999999999999999987 3 58999999876421 12333 11 126665553
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+. .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 195 (259)
T PRK14274 119 IHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT--NPDVLLMDEPTSALDPVSTRKIE- 195 (259)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-
Confidence 2234556666431 00111123455544 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 196 ~~l~~~~~-~~tiiiv 210 (259)
T PRK14274 196 ELILKLKE-KYTIVIV 210 (259)
T ss_pred HHHHHHhc-CCEEEEE
Confidence 88888864 6666555
No 245
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=2.4e-20 Score=159.08 Aligned_cols=132 Identities=16% Similarity=0.259 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-C-----cccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-P-----VAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-~-----~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.++.. ..+.| + .+.++++++.
T Consensus 28 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~ 107 (218)
T cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNK 107 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhhcCcCCH
Confidence 3689999999999999999999999999999998865321 12323 1 1346666664
Q ss_pred --HHHHHHHhCCCCCCc---------hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH-HH
Q 025795 59 --LEDVMEELGLGPNGG---------LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN-FV 123 (248)
Q Consensus 59 --~~~~m~~~~L~~~~~---------~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~-ll 123 (248)
..++++.+++.+.-. .......+++++ +++||++++. +|+++|+||||+ ||+.++..+++. ++
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~~~~ll 185 (218)
T cd03290 108 QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ--NTNIVFLDDPFSALDIHLSDHLMQEGIL 185 (218)
T ss_pred HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 234455555432100 000123355543 4899999999 999999999999 999999998832 77
Q ss_pred HHHHhCCCeEEEE
Q 025795 124 DHLKSRNFNVCAV 136 (248)
Q Consensus 124 ~~l~~~~~~ii~v 136 (248)
+.+++.|.+++++
T Consensus 186 ~~~~~~~~tii~~ 198 (218)
T cd03290 186 KFLQDDKRTLVLV 198 (218)
T ss_pred HHHhcCCCEEEEE
Confidence 7776667777665
No 246
>PRK13409 putative ATPase RIL; Provisional
Probab=99.83 E-value=9.9e-21 Score=183.30 Aligned_cols=128 Identities=23% Similarity=0.269 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC---------CCCC----C---Ccc---cC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA---------ENFD----Y---PVA---MD 52 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-----------i~~~d~~~---------~~~~----y---~~~---~~ 52 (248)
-+++|+||||||||||+|+|+|+++|+.|+|. +.|.+... ..+. | .+. .+
T Consensus 100 ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 100 KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 47899999999999999999999999999997 77755311 1111 1 111 26
Q ss_pred hhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 53 i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+++++. ++++++.+++....... ...+++++ +++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 180 v~e~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~qrv~ia~al~~--~p~lllLDEPts~LD~~~~~~l~-~~ 254 (590)
T PRK13409 180 VRELLKKVDERGKLDEVVERLGLENILDRD--ISELSGGELQRVAIAAALLR--DADFYFFDEPTSYLDIRQRLNVA-RL 254 (590)
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HH
Confidence 666653 57788899997543332 34566654 4899999999 999999999999 9999999999 89
Q ss_pred HHHHHhCCCeEEEE
Q 025795 123 VDHLKSRNFNVCAV 136 (248)
Q Consensus 123 l~~l~~~~~~ii~v 136 (248)
++++.+ |.+++++
T Consensus 255 i~~l~~-g~tvIiv 267 (590)
T PRK13409 255 IRELAE-GKYVLVV 267 (590)
T ss_pred HHHHHC-CCEEEEE
Confidence 999977 8887766
No 247
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.83 E-value=4.7e-20 Score=157.26 Aligned_cols=138 Identities=9% Similarity=-0.103 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-EeccCCCC-CCCCCCcccChhhhhhH------------H-HHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-IVNLDPAA-ENFDYPVAMDIRELISL------------E-DVMEELG 67 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-i~~~d~~~-~~~~y~~~~~i~e~i~~------------~-~~m~~~~ 67 (248)
-+++|+||||||||||+++|+|+++|++|+|. +.|..... ....+.+.+++++++.. . .+.+..+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~ 93 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQ 93 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999997 66543211 12223566788887752 1 1123344
Q ss_pred CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025795 68 LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (248)
Q Consensus 68 L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (248)
+++.... ....+++++ ++++|++++. +|+++|+|||++ +|+.++..+. +.+.+..+ +.+++++ +|..
T Consensus 94 l~~~~~~--~~~~lS~G~~qrv~la~al~~--~p~llllDEP~~~lD~~~~~~~~-~~l~~~~~-~~~ii~v----sH~~ 163 (213)
T PRK15177 94 LEQCYTD--RVSEYSVTMKTHLAFAINLLL--PCRLYIADGKLYTGDNATQLRMQ-AALACQLQ-QKGLIVL----THNP 163 (213)
T ss_pred hhHHhhc--hHhhcCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHHHhh-CCcEEEE----ECCH
Confidence 4432211 123455544 3889999999 999999999998 9999998888 65543323 3455444 5666
Q ss_pred cChHHH
Q 025795 145 TDVTKF 150 (248)
Q Consensus 145 ~d~~~~ 150 (248)
.....+
T Consensus 164 ~~~~~~ 169 (213)
T PRK15177 164 RLIKEH 169 (213)
T ss_pred HHHHHh
Confidence 544444
No 248
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=2.4e-20 Score=154.51 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-Cc-----ccChhhhhhHHHHHHHhCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-PV-----AMDIRELISLEDVMEELGLGP 70 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-~~-----~~~i~e~i~~~~~m~~~~L~~ 70 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ..+.| ++ ..++++++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i------------- 95 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------- 95 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh-------------
Confidence 4689999999999999999999999999999999875421 12223 11 12344333
Q ss_pred CCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 71 NGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 71 ~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...++++ +++.||++++. +|+++|+|||++ ||+.++..++ ++++++. ++.+++++
T Consensus 96 -------~~~LS~G~~qrv~laral~~--~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~ 153 (178)
T cd03247 96 -------GRRFSGGERQRLALARILLQ--DAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKTLIWI 153 (178)
T ss_pred -------cccCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence 1224443 34899999999 999999999999 9999999988 8888885 46777655
No 249
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.83 E-value=4e-20 Score=160.46 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCC--------CCCCC-Ccc------cChhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAA--------ENFDY-PVA------MDIRELI-------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~--------~~~~y-~~~------~~i~e~i-------- 57 (248)
-+++|+||||||||||+++|+|+. +|++|+|.++|.+... ..+.| +++ .+...+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 107 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 107 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhh
Confidence 468999999999999999999995 6999999999876421 12322 111 1111100
Q ss_pred ---------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 58 ---------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 58 ---------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
.++++++.+++.+ ...... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~LS~G~~qrv~laral~~--~p~illLDEPt~~LD~~~~~~l 184 (248)
T PRK09580 108 SYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-NVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKIV 184 (248)
T ss_pred cccccccchHHHHHHHHHHHHHHcCCChhhcccCC-CCCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 1344555666632 111111 01355543 4899999999 999999999999 999999998
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025795 119 LRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (248)
. ++++++++.+.+++++
T Consensus 185 ~-~~l~~l~~~~~tiii~ 201 (248)
T PRK09580 185 A-DGVNSLRDGKRSFIIV 201 (248)
T ss_pred H-HHHHHHHhCCCEEEEE
Confidence 8 8888887667777665
No 250
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.2e-20 Score=162.94 Aligned_cols=142 Identities=18% Similarity=0.265 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC------CcccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY------PVAMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y------~~~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..+.| ....++++++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 114 (261)
T PRK14263 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLR 114 (261)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHh
Confidence 47899999999999999999999986 79999999976421 12222 11356766653
Q ss_pred -----------HHHHHHHhCCCCCCchh--hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGPNGGLI--YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -----------~~~~m~~~~L~~~~~~~--~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+++.+..... .....+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPtsgLD~~~~~~l~-~~ 191 (261)
T PRK14263 115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIAT--EPEVLLLDEPCSALDPIATRRVE-EL 191 (261)
T ss_pred hcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 34567777775421111 1123455543 4899999999 999999999999 9999999999 88
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++. ++.+++++ +|...+..++++
T Consensus 192 l~~~~-~~~tii~i----sH~~~~i~~~~d 216 (261)
T PRK14263 192 MVELK-KDYTIALV----THNMQQAIRVAD 216 (261)
T ss_pred HHHHh-cCCeEEEE----eCCHHHHHHhCC
Confidence 88885 46666554 455544444433
No 251
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.4e-20 Score=161.50 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+ |++|+|.+.|.+.. ...+.| ++ ..++++++.
T Consensus 32 e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~ 111 (251)
T PRK14244 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK 111 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHHHH
Confidence 4689999999999999999999986 46999999886531 112223 11 125555442
Q ss_pred --------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 59 --------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
+.++++.+|+.+.- ........+++++ +++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~ 189 (251)
T PRK14244 112 LHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV--KPTMLLMDEPCSALDPVATNVIE 189 (251)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 23557777875410 0011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEE
Q 025795 120 RNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (248)
++++++. ++.+++++
T Consensus 190 -~~l~~~~-~~~tiiii 204 (251)
T PRK14244 190 -NLIQELK-KNFTIIVV 204 (251)
T ss_pred -HHHHHHh-cCCeEEEE
Confidence 8888885 47777655
No 252
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.83 E-value=4e-20 Score=156.08 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=86.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-CcccChhhhhhHHHHHHHhCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-PVAMDIRELISLEDVMEELGLGPN 71 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~ 71 (248)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.++.. ..+.| +++.......++.+.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~----- 101 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV----- 101 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc-----
Confidence 46899999999999999999999 47999999999976532 12333 2221111122233333211
Q ss_pred CchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 72 GGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 72 ~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...++++ +++.||++++. +|+++|+||||+ ||+.++..+. ++++++.+++.+++++
T Consensus 102 ------~~~LS~G~~qrv~laral~~--~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~tiii~ 160 (200)
T cd03217 102 ------NEGFSGGEKKRNEILQLLLL--EPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKSVLII 160 (200)
T ss_pred ------cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 0234444 34899999999 999999999999 9999999998 8888887667777665
No 253
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.2e-20 Score=161.42 Aligned_cols=130 Identities=19% Similarity=0.301 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+||||||||||+++|+|+.++ ++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~ 109 (250)
T PRK14240 30 QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 46899999999999999999998763 68999999876431 12223 11 2466666542
Q ss_pred --------------HHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 60 --------------~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
.++++.+++.+. .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~- 186 (250)
T PRK14240 110 THGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV--EPEVLLMDEPTSALDPISTLKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 223444554310 00001123355543 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 187 ~~l~~~~~-~~tiii~ 201 (250)
T PRK14240 187 ELIQELKK-DYTIVIV 201 (250)
T ss_pred HHHHHHhc-CCeEEEE
Confidence 88888854 6676655
No 254
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.5e-20 Score=164.03 Aligned_cols=140 Identities=23% Similarity=0.300 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.+.. .+.+.| ++ ..++++++.
T Consensus 47 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 126 (267)
T PRK14237 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALE 126 (267)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHH
Confidence 4689999999999999999999986 57999999987652 112333 11 136666654
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+. .........+++++ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 203 (267)
T PRK14237 127 RAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV--KPDILLMDEPASALDPISTMQLE- 203 (267)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2233556666321 00001123355543 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|...+...+
T Consensus 204 ~~l~~~~~-~~tiii~----tH~~~~~~~~ 228 (267)
T PRK14237 204 ETMFELKK-NYTIIIV----THNMQQAARA 228 (267)
T ss_pred HHHHHHhc-CCEEEEE----ecCHHHHHHh
Confidence 88888854 6666555 4544433333
No 255
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.6e-20 Score=161.24 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CC---CCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ET---VRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~---~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+. +| ++|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 111 (252)
T PRK14239 32 EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLR 111 (252)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHHHH
Confidence 468999999999999999999985 36 4899999987642 112333 11 246776654
Q ss_pred -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.- . .......+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14239 112 LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT--SPKIILLDEPTSALDPISAGKIE- 188 (252)
T ss_pred HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHH-
Confidence 12244455553210 0 001123355543 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|...+...+
T Consensus 189 ~~l~~~~~-~~tii~~----sH~~~~~~~~ 213 (252)
T PRK14239 189 ETLLGLKD-DYTMLLV----TRSMQQASRI 213 (252)
T ss_pred HHHHHHhh-CCeEEEE----ECCHHHHHHh
Confidence 88888854 5666555 4555433333
No 256
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4e-20 Score=161.02 Aligned_cols=140 Identities=18% Similarity=0.265 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 110 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPR 110 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhHHH
Confidence 468999999999999999999999987 6999999876421 12223 11 1256665531
Q ss_pred --------------HHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 60 --------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 60 --------------~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+++++.+++.+. .........+++++ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 187 (251)
T PRK14249 111 MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI--EPEVILMDEPCSALDPVSTMRIE- 187 (251)
T ss_pred hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 223334554321 00001123355543 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++. ++.+++++ +|...+...+
T Consensus 188 ~~l~~~~-~~~tiliv----sh~~~~~~~~ 212 (251)
T PRK14249 188 ELMQELK-QNYTIAIV----THNMQQAARA 212 (251)
T ss_pred HHHHHHh-cCCEEEEE----eCCHHHHHhh
Confidence 8888884 57777655 4555444443
No 257
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=5.7e-20 Score=155.25 Aligned_cols=131 Identities=23% Similarity=0.223 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~--- 69 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|. ....+...+ ...++++++. ..+..+.+++.
T Consensus 32 ~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l-~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (204)
T cd03250 32 ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWI-QNGTIRENILFGKPFDEERYEKVIKACALEPDL 110 (204)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchh-ccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHH
Confidence 468999999999999999999999999999998771 111111111 1345555553 12333333321
Q ss_pred ---CCCc---hhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 ---PNGG---LIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ---~~~~---~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|.+- .......++.+ ++++||++++. +|+++|+|||++ ||+.+++.+.+.+++.+.+.+.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~ 184 (204)
T cd03250 111 EILPDGDLTEIGEKGINLSGGQKQRISLARAVYS--DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV 184 (204)
T ss_pred HhccCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1100 00001234444 34899999999 999999999999 999999988834667665557777766
No 258
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=1.1e-20 Score=158.94 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=117.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC----------------CCCCCcccChhhhhh---------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE----------------NFDYPVAMDIRELIS--------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~----------------~~~y~~~~~i~e~i~--------- 58 (248)
++.|+|.||||||||+++++|.+.|++|+|.++|.|.... ..+-.+.+||.|++.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~r 113 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKR 113 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCccc
Confidence 5779999999999999999999999999999999887431 112245789999885
Q ss_pred -------------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
..+-++.+++|-..-+-..+..++++++++++..++.+..|+++++||-|+ |||.+...++ ++-.
T Consensus 114 gl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm-~lT~ 192 (263)
T COG1101 114 GLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM-ELTA 192 (263)
T ss_pred ccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHH-HHHH
Confidence 445555666553333334478899998866665555554999999999999 9999999999 8777
Q ss_pred HHHh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHh
Q 025795 125 HLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 163 (248)
Q Consensus 125 ~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~ 163 (248)
++.+ .+.|.++| +|.+.+..+|=.+.++..++.+.
T Consensus 193 kiV~~~klTtlMV----THnm~~Al~yG~RlImLh~G~Iv 228 (263)
T COG1101 193 KIVEEHKLTTLMV----THNMEDALDYGNRLIMLHSGKIV 228 (263)
T ss_pred HHHHhcCCceEEE----eccHHHHHhhCCeEEEEeCCeEE
Confidence 7764 57777666 68898888887766555555433
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=1.7e-20 Score=179.75 Aligned_cols=140 Identities=18% Similarity=0.238 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----------CCCCCC---------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------AENFDY---------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----------~~~~~y---------~~~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++ ++|+|+++|.++. ...+.| .+..++++++.
T Consensus 313 e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 4689999999999999999999985 8999999986542 112333 12346665542
Q ss_pred -------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 -------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 -------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+++.+ ..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 392 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~llllDEPt~~LD~~~~~~l~-~ 466 (529)
T PRK15134 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHRY--PAEFSGGQRQRIAIARALIL--KPSLIILDEPTSSLDKTVQAQIL-A 466 (529)
T ss_pred ccccCChHHHHHHHHHHHHHcCCCHHHHhcC--CccCCHHHHHHHHHHHHHhC--CCCEEEeeCCccccCHHHHHHHH-H
Confidence 345677788853 22211 24566654 4899999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795 122 FVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 122 ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++++ |.+++++ +|.......+++
T Consensus 467 ~l~~~~~~~~~tvi~v----sHd~~~~~~~~d 494 (529)
T PRK15134 467 LLKSLQQKHQLAYLFI----SHDLHVVRALCH 494 (529)
T ss_pred HHHHHHHhhCCEEEEE----eCCHHHHHHhcC
Confidence 99998764 7787766 465554444433
No 260
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=2.7e-20 Score=158.87 Aligned_cols=130 Identities=21% Similarity=0.177 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~---------~~ 60 (248)
-+++|+||||||||||+++|+|+.+|++|+|.++|.+... ..+.| ....++++++. +.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~ 110 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELW 110 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHH
Confidence 4689999999999999999999999999999999865421 12222 11236666653 34
Q ss_pred HHHHHhCCCCCCch---------hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGPNGGL---------IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~~~~~---------~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++.+++.+.... ......++.++ ++.||++++. +|+++|+|||++ ||+.++..+. ++++++.+
T Consensus 111 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~ 187 (221)
T cd03244 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREAFK 187 (221)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHhcC
Confidence 45555555321100 00123355443 4899999999 999999999999 9999999988 88888754
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
+.+++++
T Consensus 188 -~~tii~~ 194 (221)
T cd03244 188 -DCTVLTI 194 (221)
T ss_pred -CCEEEEE
Confidence 5666544
No 261
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.7e-20 Score=162.93 Aligned_cols=141 Identities=16% Similarity=0.262 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 66 e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (285)
T PRK14254 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145 (285)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHH
Confidence 4689999999999999999999987 689999998866421 11222 11 126666553
Q ss_pred -----------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 -----------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 -----------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.++++.+++.+.- ........+++++ +++||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~--~p~lLLLDEPts~LD~~~~~~l~-~~ 222 (285)
T PRK14254 146 IQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP--DPEVILMDEPASALDPVATSKIE-DL 222 (285)
T ss_pred HcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HH
Confidence 34556677774321 0111123455554 4899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
++++.+ +.+++++ +|...+...++
T Consensus 223 L~~~~~-~~tiii~----tH~~~~i~~~~ 246 (285)
T PRK14254 223 IEELAE-EYTVVIV----THNMQQAARIS 246 (285)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHhhc
Confidence 999865 4566544 45554434333
No 262
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.7e-20 Score=161.71 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++|+ +|+|.++|.++. ...+.| ++ ..++++++.
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~ 113 (261)
T PRK14258 34 KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK 113 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHHHH
Confidence 478999999999999999999999985 799999887642 011222 11 146665543
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.- ........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~--~p~vllLDEP~~~LD~~~~~~l~- 190 (261)
T PRK14258 114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV--KPKVLLMDEPCFGLDPIASMKVE- 190 (261)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 23455566663210 0011123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 121 NFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 121 ~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++++ .+.+++++ +|...+...+++
T Consensus 191 ~~l~~l~~~~~~tiiiv----sH~~~~i~~~~d 219 (261)
T PRK14258 191 SLIQSLRLRSELTMVIV----SHNLHQVSRLSD 219 (261)
T ss_pred HHHHHHHHhCCCEEEEE----ECCHHHHHHhcC
Confidence 88888764 47777666 455554444443
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.83 E-value=4e-20 Score=196.43 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.|.+... +.++| .+.++++|++.
T Consensus 957 ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~ 1036 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWE 1036 (2272)
T ss_pred cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHH
Confidence 4789999999999999999999999999999999987532 22333 34578888764
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++++|+.+..... ...+++|++ ++||++++. +|+++|+||||+ ||+.+++.++ +++++++ +|
T Consensus 1037 ~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~--~PkVLLLDEPTSGLDp~sr~~l~-~lL~~l~-~g 1110 (2272)
T TIGR01257 1037 EAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVG--DAKVVVLDEPTSGVDPYSRRSIW-DLLLKYR-SG 1110 (2272)
T ss_pred HHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh-CC
Confidence 45678888987653333 345666654 899999999 999999999999 9999999999 9999985 57
Q ss_pred CeEEEEEecccccccChHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFISGC 154 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s~~ 154 (248)
.+++++ +|.+.+...+++.+
T Consensus 1111 ~TIIlt----THdmdea~~laDrI 1130 (2272)
T TIGR01257 1111 RTIIMS----THHMDEADLLGDRI 1130 (2272)
T ss_pred CEEEEE----ECCHHHHHHhCCEE
Confidence 777655 45555555444433
No 264
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.2e-20 Score=159.73 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-----CceEEEeccCCCC---------CCCCC-------CcccChhhhhhH--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-----RRTMHIVNLDPAA---------ENFDY-------PVAMDIRELISL-- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-----~G~i~i~~~d~~~---------~~~~y-------~~~~~i~e~i~~-- 59 (248)
-+++|+||||||||||+++|+|.++|. +|+|.++|.+... ..+.| .+..++++++..
T Consensus 31 e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 31 TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 368999999999999999999999874 7999999876421 12333 223567766641
Q ss_pred ---------------HHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 60 ---------------EDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 60 ---------------~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
.++++.+++... .........+++++ +++||++++. +|+++|+|||++ ||+.++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~ 188 (252)
T PRK14272 111 KLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV--EPEILLMDEPTSALDPASTARIE 188 (252)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH
Confidence 111222333210 00011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 120 RNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 120 ~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++++ +.+++++ +|.......+
T Consensus 189 -~~l~~~~~-~~tiii~----sH~~~~~~~~ 213 (252)
T PRK14272 189 -DLMTDLKK-VTTIIIV----THNMHQAARV 213 (252)
T ss_pred -HHHHHHhc-CCeEEEE----eCCHHHHHHh
Confidence 88888854 6666555 4554433333
No 265
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=9.8e-20 Score=154.15 Aligned_cols=124 Identities=20% Similarity=0.213 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh------HHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS------LEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~------~~~~m 63 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.+... ..+.| ....++++++. .+++.
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~ 114 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY 114 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHH
Confidence 4689999999999999999999999999999999875421 12222 11236666653 22333
Q ss_pred HHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 64 EELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+.+++... ...++++ ++++||++++. +|+++|+|||++ ||+.++..+. ++++++. ++.+++++
T Consensus 115 ~~l~~~~~------~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~tiii~ 180 (207)
T cd03369 115 GALRVSEG------GLNLSQGQRQLLCLARALLK--RPRVLVLDEATASIDYATDALIQ-KTIREEF-TNSTILTI 180 (207)
T ss_pred HHhhccCC------CCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCEEEEE
Confidence 33443222 2335554 34899999999 999999999999 9999999888 8888874 47777655
No 266
>PLN03211 ABC transporter G-25; Provisional
Probab=99.82 E-value=2.6e-20 Score=182.49 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccCCCC---CCCCC-------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~--~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+++|+|..+|. +|+|.++|.+... ..+.| .+.+|++|++.
T Consensus 95 e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~ 174 (659)
T PLN03211 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174 (659)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCC
Confidence 478999999999999999999999885 8999999976521 12333 33567877764
Q ss_pred -------HHHHHHHhCCCCCCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 -------LEDVMEELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++++++.+||.+...... ....+++++ ++.||++++. +|+++++||||+ ||..++..+. +++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~--~P~iLlLDEPtsgLD~~~~~~l~-~~L~~ 251 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDATAAYRLV-LTLGS 251 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh--CCCEEEEeCCCCCcCHHHHHHHH-HHHHH
Confidence 355777888865321100 012355543 4999999999 999999999999 9999999999 89999
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
++++|.+++++
T Consensus 252 l~~~g~TvI~~ 262 (659)
T PLN03211 252 LAQKGKTIVTS 262 (659)
T ss_pred HHhCCCEEEEE
Confidence 97778887655
No 267
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.9e-20 Score=162.07 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|++++ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 52 e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 131 (272)
T PRK14236 52 RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLR 131 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHH
Confidence 47899999999999999999999874 89999999876531 12222 11 126666553
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+. .........+++++ +++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~--~p~lllLDEPt~gLD~~~~~~l~- 208 (272)
T PRK14236 132 LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI--EPEVLLLDEPTSALDPISTLKIE- 208 (272)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 2334455566431 00001123455543 4899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++++ +.+++++
T Consensus 209 ~~L~~~~~-~~tiiiv 223 (272)
T PRK14236 209 ELITELKS-KYTIVIV 223 (272)
T ss_pred HHHHHHHh-CCeEEEE
Confidence 88998865 6666554
No 268
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.9e-20 Score=160.10 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec------cCCC-------CCCCCC-------CcccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDPA-------AENFDY-------PVAMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~------~d~~-------~~~~~y-------~~~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.| .+.. ...+.| .+..++++++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~ 116 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLK 116 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHH
Confidence 47899999999999999999999999987766554 3321 111222 23456666553
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.. ........++.++ +..||++++. +|+++|+||||+ ||+.++..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~--~P~llllDEPt~~LD~~~~~~l~- 193 (257)
T PRK14246 117 SHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL--KPKVLLMDEPTSMIDIVNSQAIE- 193 (257)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 24456667775310 0001123344443 4899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+++.++.+ +.+++++ +|.......+
T Consensus 194 ~~l~~~~~-~~tiilv----sh~~~~~~~~ 218 (257)
T PRK14246 194 KLITELKN-EIAIVIV----SHNPQQVARV 218 (257)
T ss_pred HHHHHHhc-CcEEEEE----ECCHHHHHHh
Confidence 88888854 5676655 4555433333
No 269
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.8e-20 Score=159.30 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC--------CCCCC-Cc-----ccChhhhhhH----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA--------ENFDY-PV-----AMDIRELISL---- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~--------~~~~y-~~-----~~~i~e~i~~---- 59 (248)
-+++|+||||||||||+++|+|+++| ++|+|.+.|.+... ..+.| ++ ..++++++..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~ 109 (249)
T PRK14253 30 QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRA 109 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHh
Confidence 47899999999999999999999986 58999999865421 12223 11 2466665531
Q ss_pred -------------HHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 60 -------------EDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 60 -------------~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
.++++.+++.+.- . .......+++++ ++.||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEP~~~LD~~~~~~l~-~ 186 (249)
T PRK14253 110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM--EPDVILMDEPTSALDPIATHKIE-E 186 (249)
T ss_pred cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHHH-H
Confidence 2233445543210 0 001122344443 4899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+++++.+ +.+++++ +|...+...+
T Consensus 187 ~l~~~~~-~~tii~~----sh~~~~~~~~ 210 (249)
T PRK14253 187 LMEELKK-NYTIVIV----THSMQQARRI 210 (249)
T ss_pred HHHHHhc-CCeEEEE----ecCHHHHHHh
Confidence 9999865 5666555 4554433433
No 270
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.6e-20 Score=162.20 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+|+||||||||+++|+|+++ |++|+|.++|.+.. ...+.| ++ ..++++++..
T Consensus 51 e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~ 130 (271)
T PRK14238 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK 130 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHHHH
Confidence 4789999999999999999999987 69999999987642 112223 11 1366666541
Q ss_pred --------------HHHHHHhCCCCC-C-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 60 --------------EDVMEELGLGPN-G-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 60 --------------~~~m~~~~L~~~-~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
.++++.+++... . ........++++. +++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~--~p~lllLDEPt~~LD~~~~~~l~- 207 (271)
T PRK14238 131 IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI--EPDVILMDEPTSALDPISTLKVE- 207 (271)
T ss_pred hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCcCCHHHHHHHH-
Confidence 122223322100 0 0001123354443 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|.......+
T Consensus 208 ~~l~~~~~-~~tiiiv----sH~~~~i~~~ 232 (271)
T PRK14238 208 ELVQELKK-DYSIIIV----THNMQQAARI 232 (271)
T ss_pred HHHHHHHc-CCEEEEE----EcCHHHHHHh
Confidence 88888865 6666555 4555433333
No 271
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-19 Score=148.69 Aligned_cols=126 Identities=14% Similarity=0.064 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC-------------CCCCCcccChhhhhh------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------------NFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~-------------~~~y~~~~~i~e~i~------------ 58 (248)
.+.|.||||||||||+|+++|+++|++|+|++.|..+..+ ..+..+.+|++|++.
T Consensus 30 ~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~ 109 (209)
T COG4133 30 ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAA 109 (209)
T ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchh
Confidence 5679999999999999999999999999999998765432 122345788888875
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (248)
+.++++.+||........ .+++.+++ ++||+-++. .+++.|+|||+. ||......+- .++..-.+.|..|+
T Consensus 110 ~i~~Al~~vgL~g~~dlp~--~~LSAGQqRRvAlArL~ls--~~pLWiLDEP~taLDk~g~a~l~-~l~~~H~~~GGiVl 184 (209)
T COG4133 110 TIWEALAQVGLAGLEDLPV--GQLSAGQQRRVALARLWLS--PAPLWILDEPFTALDKEGVALLT-ALMAAHAAQGGIVL 184 (209)
T ss_pred hHHHHHHHcCcccccccch--hhcchhHHHHHHHHHHHcC--CCCceeecCcccccCHHHHHHHH-HHHHHHhcCCCEEE
Confidence 678899999987766553 35665543 999999998 999999999998 9999987776 76666555544443
No 272
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=159.02 Aligned_cols=142 Identities=20% Similarity=0.290 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+|+||||||||+++|+|+++| ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 113 (259)
T PRK14260 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVR 113 (259)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHHHH
Confidence 47899999999999999999999885 48999999875421 12222 11 246666653
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++... .........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~- 190 (259)
T PRK14260 114 ISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI--KPKVLLMDEPCSALDPIATMKVE- 190 (259)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 2344555666321 00011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++.+ +.+++++ +|...+...+++
T Consensus 191 ~~l~~~~~-~~tiii~----tH~~~~i~~~~d 217 (259)
T PRK14260 191 ELIHSLRS-ELTIAIV----THNMQQATRVSD 217 (259)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHHhcC
Confidence 88888854 5666655 465554444433
No 273
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=7.3e-20 Score=150.26 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~ 79 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+..- ..+.. +.+..++++++... . ..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~-~~~~~tv~~nl~~~--------~--------~~ 90 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRP-YLPLGTLREQLIYP--------W--------DD 90 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCC-ccccccHHHHhhcc--------C--------CC
Confidence 46899999999999999999999999999999876310 01111 11234666655321 0 12
Q ss_pred hhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 80 HLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 80 ~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++++ +++.+|++++. +|+++|+|||++ ||+.++..+. ++++++ +.+++++
T Consensus 91 ~LS~G~~~rv~laral~~--~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~tiiiv 144 (166)
T cd03223 91 VLSGGEQQRLAFARLLLH--KPKFVFLDEATSALDEESEDRLY-QLLKEL---GITVISV 144 (166)
T ss_pred CCCHHHHHHHHHHHHHHc--CCCEEEEECCccccCHHHHHHHH-HHHHHh---CCEEEEE
Confidence 34444 34899999999 999999999999 9999998888 777765 4566555
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.3e-20 Score=176.37 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C--CCCCCCCCcccChhhhhh---------------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELIS--------------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~--~~~~~~y~~~~~i~e~i~--------------------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. . ..+.....+..++++++.
T Consensus 28 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 107 (530)
T PRK15064 28 NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPE 107 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4689999999999999999999999999999987521 1 011112223344443322
Q ss_pred ---------------------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc
Q 025795 59 ---------------------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 59 ---------------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~ 109 (248)
+.++++.+|+...... .....+++++ +++||++++. +|+++|+||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGq~qrv~lA~aL~~--~p~lLlLDEPt~ 184 (530)
T PRK15064 108 MSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY-GLMSEVAPGWKLRVLLAQALFS--NPDILLLDEPTN 184 (530)
T ss_pred cccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc-CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCc
Confidence 3456777777532111 1235566665 4899999999 999999999999
Q ss_pred -cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
||+.++..+. ++++ +.+.++++| +|.......+++
T Consensus 185 ~LD~~~~~~l~-~~l~---~~~~tiiiv----sHd~~~~~~~~d 220 (530)
T PRK15064 185 NLDINTIRWLE-DVLN---ERNSTMIII----SHDRHFLNSVCT 220 (530)
T ss_pred ccCHHHHHHHH-HHHH---hCCCeEEEE----eCCHHHHHhhcc
Confidence 9999998877 6654 347777665 455544444443
No 275
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9.2e-20 Score=162.08 Aligned_cols=140 Identities=17% Similarity=0.279 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCC---------CCCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPA---------AENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~---------~~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++. ...+.| ++ ..+++|++.
T Consensus 66 e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 145 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPR 145 (286)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHH
Confidence 4789999999999999999999864 48999999986542 112333 11 126666553
Q ss_pred -------------HHHHHHHhCCCCC--CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPN--GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~--~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++... .........+++++ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~gLD~~~~~~l~- 222 (286)
T PRK14275 146 LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV--EPEILLLDEPTSALDPKATAKIE- 222 (286)
T ss_pred hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-
Confidence 2234455555310 00111123455554 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++++.+ +.+++++ +|.......+
T Consensus 223 ~~L~~~~~-~~tvIiv----sH~~~~~~~~ 247 (286)
T PRK14275 223 DLIQELRG-SYTIMIV----THNMQQASRV 247 (286)
T ss_pred HHHHHHhc-CCeEEEE----eCCHHHHHHh
Confidence 88888854 5666554 4555433333
No 276
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.7e-20 Score=161.48 Aligned_cols=142 Identities=16% Similarity=0.227 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 37 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~ 116 (264)
T PRK14243 37 QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGAR 116 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhhhh
Confidence 4789999999999999999999976 378999999876421 12222 11 1366665531
Q ss_pred ------------HHHHHHhCCCCC-C-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 60 ------------EDVMEELGLGPN-G-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 60 ------------~~~m~~~~L~~~-~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
.++++.+++... . ........+++++ ++.||++++. +|+++|+|||++ ||+.++..+. ++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 193 (264)
T PRK14243 117 INGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV--QPEVILMDEPCSALDPISTLRIE-EL 193 (264)
T ss_pred hcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 223444454210 0 0001122355543 4899999999 999999999999 9999999988 88
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++.+ +.+++++ +|...+...+++
T Consensus 194 L~~~~~-~~tvi~v----tH~~~~~~~~~d 218 (264)
T PRK14243 194 MHELKE-QYTIIIV----THNMQQAARVSD 218 (264)
T ss_pred HHHHhc-CCEEEEE----ecCHHHHHHhCC
Confidence 998865 4666555 455544444433
No 277
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=160.41 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC--------CCCCCC-Cc-----ccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA--------AENFDY-PV-----AMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~--------~~~~~y-~~-----~~~i~e~i~----- 58 (248)
-+++|+||||||||||+++|+|+++| ++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 48 e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~ 127 (276)
T PRK14271 48 AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRA 127 (276)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHHHHh
Confidence 46899999999999999999999985 6999999886532 112222 11 246666553
Q ss_pred ------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+++..... .......+++++ +++||++++. +|+++|+||||+ ||+.++..+. +
T Consensus 128 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~--~p~lllLDEPt~~LD~~~~~~l~-~ 204 (276)
T PRK14271 128 HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV--NPEVLLLDEPTSALDPTTTEKIE-E 204 (276)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHHHH-H
Confidence 133456667653110 011123455554 4899999999 999999999999 9999999988 8
Q ss_pred HHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 122 FVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
+++++.+ +.+++++ +|...+...+
T Consensus 205 ~L~~~~~-~~tiiiv----sH~~~~~~~~ 228 (276)
T PRK14271 205 FIRSLAD-RLTVIIV----THNLAQAARI 228 (276)
T ss_pred HHHHHhc-CCEEEEE----eCCHHHHHHh
Confidence 8888865 4666655 4554433333
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=1e-19 Score=158.18 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhh-hHHHHHHHhCCCCCCchhhhHHhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-SLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i-~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
-++||+|.+||||||+-|++.|+++|++|+|++.|.|...-. ..+.. .+.++++.+|+.+.-...|.. .+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------~~~~~~~v~elL~~Vgl~~~~~~ryPh-el 110 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------KEERRERVLELLEKVGLPEEFLYRYPH-EL 110 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--------hhHHHHHHHHHHHHhCCCHHHhhcCCc-cc
Confidence 468999999999999999999999999999999998854322 22222 388999999998876666664 45
Q ss_pred hhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 82 EDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 82 ~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
++++ ++.||||++. +|+++++|||++ ||.-.+.++. +++.++++ .|.+.+++
T Consensus 111 SGGQrQRi~IARALal--~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt~lFI 166 (268)
T COG4608 111 SGGQRQRIGIARALAL--NPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLTYLFI 166 (268)
T ss_pred CchhhhhHHHHHHHhh--CCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 5554 4899999999 999999999999 9999999999 99999985 48887766
No 279
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.81 E-value=7.1e-20 Score=179.60 Aligned_cols=123 Identities=23% Similarity=0.283 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-------HHHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS-------LEDVM 63 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~-------~~~~m 63 (248)
.++|+|+||||||||+|+|+|+++|..|+|.++|.|.+. +.+.| ++ +-+|+|+++ .++++
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence 589999999999999999999999999999999998753 44555 22 347888886 23333
Q ss_pred HHh---C---------------CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 64 EEL---G---------------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 64 ~~~---~---------------L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+.. | ++..| ..+++|+ +.+|||++.. +|+++|+||||+ ||..+.+.+. +-
T Consensus 581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G------~~LSGGQrQrlalARaLl~--~P~ILlLDEaTSaLD~~sE~~I~-~~ 651 (709)
T COG2274 581 EAAQLAGAHEFIENLPMGYDTPVGEGG------ANLSGGQRQRLALARALLS--KPKILLLDEATSALDPETEAIIL-QN 651 (709)
T ss_pred HHHHHhCcHHHHHhcccccccccccCC------CCCCHHHHHHHHHHHHhcc--CCCEEEEeCcccccCHhHHHHHH-HH
Confidence 222 1 12222 1255554 4899999999 999999999999 9999999988 66
Q ss_pred HHHHHhCCCeEEEE
Q 025795 123 VDHLKSRNFNVCAV 136 (248)
Q Consensus 123 l~~l~~~~~~ii~v 136 (248)
+.++.+ |.|+++|
T Consensus 652 L~~~~~-~~T~I~I 664 (709)
T COG2274 652 LLQILQ-GRTVIII 664 (709)
T ss_pred HHHHhc-CCeEEEE
Confidence 666643 5665554
No 280
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=157.45 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.++ ++|+|.++|.+... ..+.| ++ ..++++++.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~ 112 (253)
T PRK14261 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPR 112 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhhHH
Confidence 46899999999999999999998753 48999999866421 11222 11 125555543
Q ss_pred -------------HHHHHHHhCCCCCC-c-hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG-G-LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~-~-~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+.- . .......+++++ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~lllLDEP~~gLD~~~~~~l~- 189 (253)
T PRK14261 113 IHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV--NPEVILMDEPCSALDPIATAKIE- 189 (253)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 23344555553210 0 011123455554 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 190 ~~l~~~~~-~~tvii~ 204 (253)
T PRK14261 190 DLIEDLKK-EYTVIIV 204 (253)
T ss_pred HHHHHHhh-CceEEEE
Confidence 88888865 5666554
No 281
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=159.80 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+||||||||||+++|+|++++ .+|+|.++|.+... ..+.| ++ ..++.+++..
T Consensus 47 e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~ 126 (274)
T PRK14265 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPR 126 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHH
Confidence 46899999999999999999999863 58999999876421 12223 11 1256666532
Q ss_pred ------------HHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 60 ------------EDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 60 ------------~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
.+.++.+++..... .......+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lllLDEPt~~LD~~~~~~l~-~~ 203 (274)
T PRK14265 127 ANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM--KPDVLLMDEPCSALDPISTRQVE-EL 203 (274)
T ss_pred hcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh--CCCEEEEeCCcccCCHHHHHHHH-HH
Confidence 23344555531100 001123355543 4899999999 999999999999 9999999999 88
Q ss_pred HHHHHhCCCeEEEEEecccccccChHHH
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++++.+ +.+++++ +|.......+
T Consensus 204 L~~~~~-~~tiii~----sH~~~~~~~~ 226 (274)
T PRK14265 204 CLELKE-QYTIIMV----THNMQQASRV 226 (274)
T ss_pred HHHHhc-CCEEEEE----eCCHHHHHHh
Confidence 888864 5666555 4555444443
No 282
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=156.52 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--C---CCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE--T---VRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~---~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+||||||||||+++|+|+.+ | ++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~ 111 (252)
T PRK14255 32 EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLR 111 (252)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHH
Confidence 4689999999999999999999865 4 58999999876421 12222 11 1366665541
Q ss_pred --------------HHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 60 --------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 60 --------------~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
.+.++.+++...- ........+++++ ++.||++++. +|+++|+||||+ ||+.++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEPt~~LD~~~~~~l~- 188 (252)
T PRK14255 112 LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV--KPDVILLDEPTSALDPISSTQIE- 188 (252)
T ss_pred HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 1223444442110 0011123455543 3899999999 999999999999 9999999998
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++.+ +.+++++
T Consensus 189 ~~l~~~~~-~~tii~v 203 (252)
T PRK14255 189 NMLLELRD-QYTIILV 203 (252)
T ss_pred HHHHHHHh-CCEEEEE
Confidence 88888865 4666655
No 283
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.81 E-value=2.3e-19 Score=173.72 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||+|||||||+++|+|++ |++|+|.++|.|... +.+.| -.+-|++|++. +
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei 455 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQL 455 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHH
Confidence 358999999999999999999999 999999999987642 23333 22458888885 3
Q ss_pred HHHHHHhCCC------CCCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |+|-... .-..+++|+ |.+|||++.. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 456 ~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~--~~~IliLDE~TSaLD~~te~~i~-~~l~~~~ 532 (588)
T PRK11174 456 QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--PCQLLLLDEPTASLDAHSEQLVM-QALNAAS 532 (588)
T ss_pred HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 3344443332 1111000 012355554 4899999999 999999999999 9999999998 7777774
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.|+++|
T Consensus 533 -~~~TvIiI 540 (588)
T PRK11174 533 -RRQTTLMV 540 (588)
T ss_pred -CCCEEEEE
Confidence 46676655
No 284
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=174.07 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------- 58 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ +-|+++++.
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 449 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHH
Confidence 3589999999999999999999999999999999987532 23344 22 347777775
Q ss_pred HHHHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 LEDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ~~~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++..++.+ +|-.. ..-..+++|+ +.+|||++.. +|+++|+||||+ ||+.+...+. +.+.++
T Consensus 450 i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~--~~~ililDEptsaLD~~t~~~i~-~~l~~~ 526 (582)
T PRK11176 450 IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 334444444321 11000 0012355554 4899999999 999999999999 9999999988 777776
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
. ++.|+++|
T Consensus 527 ~-~~~tvI~V 535 (582)
T PRK11176 527 Q-KNRTSLVI 535 (582)
T ss_pred h-CCCEEEEE
Confidence 4 45676665
No 285
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.6e-19 Score=168.67 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCC------CCCcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF------DYPVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~------~y~~~~~i~e~i~----------~ 59 (248)
-.++|+|+||||||||++.|+|+.+|+.|+|.++|.+..+ +++ ||-..-|+||++. +
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i 427 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEI 427 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHH
Confidence 3579999999999999999999999999999999987643 222 3433458999985 5
Q ss_pred HHHHHHhCCCCCC----chhhhH----Hhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 60 EDVMEELGLGPNG----GLIYCM----EHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 60 ~~~m~~~~L~~~~----~~~~~~----~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
.+++++.|+.+.- +.-... .-++++ +|+++||++.. +++++||||||+ ||.++...+. +.+.++.+
T Consensus 428 ~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~--~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~ 504 (559)
T COG4988 428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS--PASLLLLDEPTAHLDAETEQIIL-QALQELAK 504 (559)
T ss_pred HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC--CCCEEEecCCccCCCHhHHHHHH-HHHHHHHh
Confidence 5666666553211 111111 113443 45999999999 999999999999 9999999988 88888865
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
+ ++++++
T Consensus 505 ~-ktvl~i 511 (559)
T COG4988 505 Q-KTVLVI 511 (559)
T ss_pred C-CeEEEE
Confidence 4 666655
No 286
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.80 E-value=1.5e-19 Score=145.17 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.+++|+||||||||||+++|+|+++|++|+|.++|. ..+.|.+. ++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~------------------------------lS 72 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ------------------------------LS 72 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc------------------------------CC
Confidence 478999999999999999999999999999999873 22333211 22
Q ss_pred h--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 D--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
. .+++.||++++. +|+++|+|||++ +|+.++..+. ++++++ +.+++++
T Consensus 73 ~G~~~rv~laral~~--~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~til~~ 123 (144)
T cd03221 73 GGEKMRLALAKLLLE--NPNLLLLDEPTNHLDLESIEALE-EALKEY---PGTVILV 123 (144)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCEEEEE
Confidence 2 244899999999 999999999999 9999998888 777766 3466554
No 287
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.80 E-value=1.9e-19 Score=172.35 Aligned_cols=130 Identities=20% Similarity=0.213 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------CCCCC------CcccChhhhhh----------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------ENFDY------PVAMDIRELIS----------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------~~~~y------~~~~~i~e~i~----------~~ 60 (248)
-.++|+||+|||||||++.|+|+++|++|+|.++|.|... +.+.| -.+-|++|++. +.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~ 441 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELW 441 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHH
Confidence 3689999999999999999999999999999999977542 23333 22448888876 34
Q ss_pred HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++..++.+ +|-... .-..+++|+ |.+|||++.. +|+++||||||+ ||..+.+.+. +.++++.
T Consensus 442 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~--~~~iliLDE~TSaLD~~te~~I~-~~l~~~~- 517 (529)
T TIGR02868 442 AALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA--DAPILLLDEPTEHLDAGTESELL-EDLLAAL- 517 (529)
T ss_pred HHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-
Confidence 5555555431 110000 002355544 4899999999 999999999999 9999999988 6666653
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
++.|+++|
T Consensus 518 ~~~TvIiI 525 (529)
T TIGR02868 518 SGKTVVVI 525 (529)
T ss_pred CCCEEEEE
Confidence 46677665
No 288
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.5e-19 Score=159.05 Aligned_cols=140 Identities=20% Similarity=0.286 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhhH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELISL--- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~~--- 59 (248)
-+++|+||||||||||+++|+|+++ |++|+|.++|.++.. ..+.| ++ ..++++++..
T Consensus 72 e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~ 151 (305)
T PRK14264 72 SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPR 151 (305)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHh
Confidence 4689999999999999999999986 689999999876431 12333 11 1356655542
Q ss_pred --------------------------HHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc
Q 025795 60 --------------------------EDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 60 --------------------------~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~ 109 (248)
.++++.+++.+.. ........+++++ ++.||++++. +|+++|+|||++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~--~p~lLLLDEPts 229 (305)
T PRK14264 152 KHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAV--DPEVILMDEPAS 229 (305)
T ss_pred hcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCcc
Confidence 2233444442100 0000112345543 4899999999 999999999999
Q ss_pred -cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 110 -IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 110 -LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
||+.++..+. ++++++.+ +.+++++ +|.......+
T Consensus 230 gLD~~~~~~l~-~~L~~~~~-~~tiiiv----tH~~~~i~~~ 265 (305)
T PRK14264 230 ALDPIATSKIE-DLIEELAE-EYTVVVV----THNMQQAARI 265 (305)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCEEEEE----EcCHHHHHHh
Confidence 9999999998 88998865 4566544 4555433333
No 289
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4e-19 Score=154.54 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC-Cc-----ccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY-PV-----AMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y-~~-----~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.++.. ..+.| ++ ..++++++.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~ 109 (250)
T PRK14266 30 SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLR 109 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhHHh
Confidence 4789999999999999999999864 389999999976421 12232 11 124555443
Q ss_pred -------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++...- ........+++++ ++.||++++. +|+++|+|||++ ||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~--~p~llllDEP~~gLD~~~~~~l~- 186 (250)
T PRK14266 110 IHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV--SPEVILMDEPCSALDPISTTKIE- 186 (250)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEcCCCccCCHHHHHHHH-
Confidence 23345555653210 0001123345543 3899999999 999999999999 9999999988
Q ss_pred HHHHHHHhCCCeEEEE
Q 025795 121 NFVDHLKSRNFNVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v 136 (248)
++++++++ +.+++++
T Consensus 187 ~~l~~~~~-~~tiii~ 201 (250)
T PRK14266 187 DLIHKLKE-DYTIVIV 201 (250)
T ss_pred HHHHHHhc-CCeEEEE
Confidence 88888854 6677655
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.80 E-value=5e-19 Score=168.00 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC--------CCCCC-Cc--------ccChhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA--------ENFDY-PV--------AMDIRELI------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~--------~~~~y-~~--------~~~i~e~i------- 57 (248)
-+++|+||||||||||+++|+|+.++ ++|+|++.|.+... ..+.| ++ ..++++.+
T Consensus 287 e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~ 366 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc
Confidence 47899999999999999999998775 69999999865311 12333 11 11233221
Q ss_pred -------------hHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 58 -------------SLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 58 -------------~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
.++++++.+++.+ ..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~gLD~~~~~~l~- 441 (490)
T PRK10938 367 IGIYQAVSDRQQKLAQQWLDILGIDKRTADAP--FHSLSWGQQRLALIVRALVK--HPTLLILDEPLQGLDPLNRQLVR- 441 (490)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCchhhccCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHH-
Confidence 2457788888875 33222 34566654 4899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCC-eEEEE
Q 025795 121 NFVDHLKSRNF-NVCAV 136 (248)
Q Consensus 121 ~ll~~l~~~~~-~ii~v 136 (248)
++++++++++. +++++
T Consensus 442 ~~L~~l~~~~~~tviiv 458 (490)
T PRK10938 442 RFVDVLISEGETQLLFV 458 (490)
T ss_pred HHHHHHHhcCCcEEEEE
Confidence 99999876654 46555
No 291
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.80 E-value=4.1e-19 Score=170.70 Aligned_cols=129 Identities=23% Similarity=0.291 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-+++|++. +
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 424 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKI 424 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999976532 12222 11337777764 1
Q ss_pred ---------HHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 60 ---------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 60 ---------~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
.+.++.+ |+...-+.. ...+++++ +++|||++.. +|+++|+||||+ ||..+...+. +.+++
T Consensus 425 ~~~~~~~~~~~~i~~l~~gl~t~~~~~--g~~LSgGq~qrl~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~ 499 (544)
T TIGR01842 425 IEAAKLAGVHELILRLPDGYDTVIGPG--GATLSGGQRQRIALARALYG--DPKLVVLDEPNSNLDEEGEQALA-NAIKA 499 (544)
T ss_pred HHHHHHhChHHHHHhCccccccccCCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccccCHHHHHHHH-HHHHH
Confidence 2233333 222111110 12355554 4899999999 999999999999 9999999988 77888
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+.+.+.+++++
T Consensus 500 ~~~~~~tvi~i 510 (544)
T TIGR01842 500 LKARGITVVVI 510 (544)
T ss_pred HhhCCCEEEEE
Confidence 75456777655
No 292
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=157.56 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCC-----------CCCCCC-Cc-----ccChhhhhh--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPA-----------AENFDY-PV-----AMDIRELIS-- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~-----------~~~~~y-~~-----~~~i~e~i~-- 58 (248)
-+++|+||||||||||+++|+|+.+| ++|+|.++|.+.. ...+.| ++ ..++++++.
T Consensus 43 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 47899999999999999999999875 7899999875431 112333 11 126666553
Q ss_pred ---------------HHHHHHHhCCCCC--CchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ---------------LEDVMEELGLGPN--GGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ---------------~~~~m~~~~L~~~--~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
+.++++.+++.+. .........++++ +++.||++++. +|+++|+||||+ ||+.++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~--~p~llllDEPt~gLD~~~~~~l 200 (265)
T PRK14252 123 LRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALAT--DPEILLFDEPTSALDPIATASI 200 (265)
T ss_pred HHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCCccCCHHHHHHH
Confidence 1233444555320 0000111234444 34899999999 999999999999 999999998
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025795 119 LRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (248)
. ++++++++ +.+++++
T Consensus 201 ~-~~l~~l~~-~~tiiiv 216 (265)
T PRK14252 201 E-ELISDLKN-KVTILIV 216 (265)
T ss_pred H-HHHHHHHh-CCEEEEE
Confidence 8 88888865 5666655
No 293
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.80 E-value=3e-19 Score=170.16 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CC--CCCCCCCCcccChhhhhh---------------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DP--AAENFDYPVAMDIRELIS--------------------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~--~~~~~~y~~~~~i~e~i~--------------------- 58 (248)
-.+||||+||+|||||+|+|+|...|++|+|...+- .. -.|..+.....++.+.+.
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~ 109 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999988652 11 123333333334444332
Q ss_pred -------------------------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-c
Q 025795 59 -------------------------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-I 110 (248)
Q Consensus 59 -------------------------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-L 110 (248)
++.++..+|+.+. . ..+..++++++ +.||++|.. +||+|+|||||+ |
T Consensus 110 ~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~--~~~~~LSGG~r~Rv~LA~aL~~--~pDlLLLDEPTNHL 184 (530)
T COG0488 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D--RPVSSLSGGWRRRVALARALLE--EPDLLLLDEPTNHL 184 (530)
T ss_pred cchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c--CchhhcCHHHHHHHHHHHHHhc--CCCEEEEcCCCccc
Confidence 2334444555554 2 22566777764 999999999 999999999999 9
Q ss_pred CHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025795 111 ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (248)
Q Consensus 111 D~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (248)
|..+...+- +.+.+. .| ++|+|. ||-+|+.
T Consensus 185 D~~~i~WLe-~~L~~~--~g-tviiVS-HDR~FLd 214 (530)
T COG0488 185 DLESIEWLE-DYLKRY--PG-TVIVVS-HDRYFLD 214 (530)
T ss_pred CHHHHHHHH-HHHHhC--CC-cEEEEe-CCHHHHH
Confidence 999875544 444432 35 776663 6666654
No 294
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.80 E-value=3e-19 Score=170.94 Aligned_cols=130 Identities=22% Similarity=0.249 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-|++|++. +
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 428 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEI 428 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHH
Confidence 3689999999999999999999999999999999987542 12333 22458888876 3
Q ss_pred HHHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++.+ +|-... .-..+++++ +.++||++.. +|+++|+||||+ +|+.+.+.+. +.++++.
T Consensus 429 ~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~--~~~ililDE~ts~lD~~~~~~i~-~~l~~~~ 505 (529)
T TIGR02857 429 RRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR--DAPLLLLDEPTAHLDAETEALVT-EALRALA 505 (529)
T ss_pred HHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHhc
Confidence 45555555532 110000 012355544 4899999999 999999999999 9999999998 7777774
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.++++|
T Consensus 506 -~~~t~i~i 513 (529)
T TIGR02857 506 -QGRTVLLV 513 (529)
T ss_pred -CCCEEEEE
Confidence 46676655
No 295
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.8e-19 Score=144.25 Aligned_cols=117 Identities=23% Similarity=0.250 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.+++|+||||||||||+++|+|.+++.+|+++++|.+..... ..++....++-+. ++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------------~~~~~~~i~~~~q---------lS 82 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------------LEELRRRIGYVPQ---------LS 82 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------------HHHHHhceEEEee---------CC
Confidence 478999999999999999999999999999999986543210 0001111111100 33
Q ss_pred hh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHH
Q 025795 83 DN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (248)
Q Consensus 83 ~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~ 149 (248)
++ .++.++++++. +|+++++|||++ +|..++..+. ++++++.+.+.+++++ +|...+...
T Consensus 83 ~G~~~r~~l~~~l~~--~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~tii~~----sh~~~~~~~ 145 (157)
T cd00267 83 GGQRQRVALARALLL--NPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIV----THDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEE----eCCHHHHHH
Confidence 33 34889999999 999999999999 9999999888 8888876656666555 455443333
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.1e-19 Score=171.02 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCCCC--CCCcccChhhhhh-----------HHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENF--DYPVAMDIRELIS-----------LEDVMEEL 66 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~~~--~y~~~~~i~e~i~-----------~~~~m~~~ 66 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+... -.+.. .+.+..++++++. +.++++.+
T Consensus 346 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~ 425 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL 425 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc
Confidence 47899999999999999999999999999999876321 11221 1333456666542 45678888
Q ss_pred CCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccc
Q 025795 67 GLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 142 (248)
Q Consensus 67 ~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~ 142 (248)
++. +..... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++ +.+++++ +|
T Consensus 426 ~l~~~~~~~~--~~~LSgGq~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v----sH 493 (530)
T PRK15064 426 LFSQDDIKKS--VKVLSGGEKGRMLFGKLMMQ--KPNVLVMDEPTNHMDMESIESLN-MALEKY---EGTLIFV----SH 493 (530)
T ss_pred CCChhHhcCc--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHC---CCEEEEE----eC
Confidence 884 222222 34566654 4899999999 999999999999 9999998888 777765 3466555 45
Q ss_pred cccChHHH
Q 025795 143 FITDVTKF 150 (248)
Q Consensus 143 ~~~d~~~~ 150 (248)
.......+
T Consensus 494 d~~~~~~~ 501 (530)
T PRK15064 494 DREFVSSL 501 (530)
T ss_pred CHHHHHHh
Confidence 55433333
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.80 E-value=3.2e-19 Score=171.93 Aligned_cols=135 Identities=18% Similarity=0.084 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C--CCCCCCCCcccChhhhhhH--------------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL-------------------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~--~~~~~~y~~~~~i~e~i~~-------------------- 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. . ..+...+.+.+++++++..
T Consensus 34 e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~ 113 (556)
T PRK11819 34 AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999886321 1 1122222334566665531
Q ss_pred --------------------------------HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEe
Q 025795 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFD 105 (248)
Q Consensus 60 --------------------------------~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilD 105 (248)
.++++.+|+.. ... ....+++++ ++.||++++. +|+++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~vlLLD 188 (556)
T PRK11819 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA--KVTKLSGGERRRVALCRLLLE--KPDMLLLD 188 (556)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhC--CCCEEEEc
Confidence 22344555532 111 234566664 4899999999 99999999
Q ss_pred CCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHH
Q 025795 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
|||+ ||+.+...+. ++++++. .+++++ +|.......+
T Consensus 189 EPt~~LD~~~~~~l~-~~L~~~~---~tviii----sHd~~~~~~~ 226 (556)
T PRK11819 189 EPTNHLDAESVAWLE-QFLHDYP---GTVVAV----THDRYFLDNV 226 (556)
T ss_pred CCCCcCChHHHHHHH-HHHHhCC---CeEEEE----eCCHHHHHhh
Confidence 9999 9999998888 7777662 366544 4554433333
No 298
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=5.4e-19 Score=143.08 Aligned_cols=128 Identities=18% Similarity=0.273 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC------CC--------------CCCCCCcccChhhhhh-----
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP------AA--------------ENFDYPVAMDIRELIS----- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~------~~--------------~~~~y~~~~~i~e~i~----- 58 (248)
.++++||+|+|||||+|.+.=+.-|.+|+..+-|... .+ +.....|.++|-+++-
T Consensus 30 tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~k 109 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCR 109 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHH
Confidence 4689999999999999999999999999999977432 11 1112245566665542
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
..++++++.|.+..++.. +. ++++ ++++|||++++ +|++++|||||. |||+....+. +++
T Consensus 110 v~gl~~~qa~~~a~ellkrlrl~~~adr~p-lh-lsggqqqrvaiaralmm--kpqvllfdeptaaldpeitaqvv-~ii 184 (242)
T COG4161 110 VLGLSKDQALARAEKLLKRLRLKPYADRYP-LH-LSGGQQQRVAIARALMM--EPQVLLFDEPTAALDPEITAQIV-SII 184 (242)
T ss_pred HhCCCHHHHHHHHHHHHHHhccccccccCc-ee-cccchhhhHHHHHHHhc--CCcEEeecCcccccCHHHHHHHH-HHH
Confidence 567788888887765442 22 3443 45999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEE
Q 025795 124 DHLKSRNFNVCAV 136 (248)
Q Consensus 124 ~~l~~~~~~ii~v 136 (248)
++|...|.+-++|
T Consensus 185 kel~~tgitqviv 197 (242)
T COG4161 185 KELAETGITQVIV 197 (242)
T ss_pred HHHHhcCceEEEE
Confidence 9998889886555
No 299
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=4.9e-19 Score=171.26 Aligned_cols=130 Identities=20% Similarity=0.257 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-+++|++. +
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i 446 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEAL 446 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHH
Confidence 3689999999999999999999999999999999987542 22333 12447888875 4
Q ss_pred HHHHHHhCCCC-----CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 60 EDVMEELGLGP-----NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 60 ~~~m~~~~L~~-----~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
.++++..++.+ +|-.-. .-..+++++ +.+|||++.. +|+++|+||||+ +|..+...+. +.++++.
T Consensus 447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~--~~~ililDE~ts~lD~~t~~~i~-~~l~~~~- 522 (574)
T PRK11160 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH--DAPLLLLDEPTEGLDAETERQIL-ELLAEHA- 522 (574)
T ss_pred HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-
Confidence 56677777653 211100 012355544 4899999999 999999999999 9999999988 7777774
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
++.+++++
T Consensus 523 ~~~tviii 530 (574)
T PRK11160 523 QNKTVLMI 530 (574)
T ss_pred CCCEEEEE
Confidence 46676655
No 300
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=7.5e-19 Score=153.74 Aligned_cols=128 Identities=18% Similarity=0.143 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~---------~~ 60 (248)
-+++|+||||||||||+++|+|+++|.+|+|.++|.+... ..+.| ....++++++. +.
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~ 127 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW 127 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHH
Confidence 4689999999999999999999999999999999876421 11222 11124444332 22
Q ss_pred HHHHHhCCC-----------CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 61 DVMEELGLG-----------PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 61 ~~m~~~~L~-----------~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++..++. +.... ....++++ +++.||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 128 ~~l~~~~l~~~~~~~~~~l~~~~~~--~~~~LS~G~~qrl~laral~~--~p~llllDEPt~gLD~~~~~~l~-~~l~~~ 202 (257)
T cd03288 128 EALEIAQLKNMVKSLPGGLDAVVTE--GGENFSVGQRQLFCLARAFVR--KSSILIMDEATASIDMATENILQ-KVVMTA 202 (257)
T ss_pred HHHHHhCcHHHHhhcccccCcEecc--CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh
Confidence 333333332 11000 01234444 34899999999 999999999999 9999998888 888877
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
. ++.+++++
T Consensus 203 ~-~~~tiii~ 211 (257)
T cd03288 203 F-ADRTVVTI 211 (257)
T ss_pred c-CCCEEEEE
Confidence 4 46777655
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.79 E-value=5e-19 Score=171.54 Aligned_cols=130 Identities=16% Similarity=0.120 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~ 60 (248)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+.| +| +-|+++++. +.
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~ 447 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW 447 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHH
Confidence 3589999999999999999999999999999999987542 23333 22 347888875 45
Q ss_pred HHHHHhCCCC------CCchh---hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGP------NGGLI---YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~~---~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++..|+.. +|-.. ..-..++++ ++.+|||++.. +|+++|+||||+ ||+.+.+.+. +.++++.+
T Consensus 448 ~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~--~~~illlDEpts~LD~~t~~~i~-~~l~~~~~ 524 (592)
T PRK10790 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ--TPQILILDEATANIDSGTEQAIQ-QALAAVRE 524 (592)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHhC
Confidence 5566555431 11000 001235554 44899999999 999999999999 9999999988 77777754
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
+.++++|
T Consensus 525 -~~tvIiv 531 (592)
T PRK10790 525 -HTTLVVI 531 (592)
T ss_pred -CCEEEEE
Confidence 5666555
No 302
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.79 E-value=1.2e-19 Score=171.19 Aligned_cols=142 Identities=19% Similarity=0.250 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC----CceEEEeccCCCC-----------CCC---------CCCcccChhhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDPAA-----------ENF---------DYPVAMDIRELIS 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~----~G~i~i~~~d~~~-----------~~~---------~y~~~~~i~e~i~ 58 (248)
-++||+|.+||||||+.+++.|++++. +|+|.++|.|... ..+ .+.|-++|.+++.
T Consensus 36 E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~ 115 (539)
T COG1123 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR 115 (539)
T ss_pred cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHH
Confidence 478999999999999999999999887 7999999976521 111 2245567777664
Q ss_pred -----------------HHHHHHHhCCCCCCch-hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795 59 -----------------LEDVMEELGLGPNGGL-IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~~-~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (248)
+.++++++|+.+.... .|+ ..+++++ ++.||++++. +|++||+||||. ||+.++.+
T Consensus 116 E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-heLSGG~rQRv~iAmALa~--~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 116 EALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-HQLSGGMRQRVMIAMALAL--KPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-cccCchHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHH
Confidence 6788899999876543 355 4566765 4899999999 999999999998 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEEecccccccChHHHHH
Q 025795 118 VLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++ ++++++.+ .|.++++| +|.+.=.+.+++
T Consensus 193 IL-~llk~l~~e~g~a~l~I----THDl~Vva~~aD 223 (539)
T COG1123 193 IL-DLLKDLQRELGMAVLFI----THDLGVVAELAD 223 (539)
T ss_pred HH-HHHHHHHHHcCcEEEEE----cCCHHHHHHhcC
Confidence 99 99999984 68888776 455543333333
No 303
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=1.1e-18 Score=144.86 Aligned_cols=116 Identities=20% Similarity=0.241 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCcccChhhhhhHHHHHHHhCCCCC-CchhhhHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELISLEDVMEELGLGPN-GGLIYCME 79 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y~~~~~i~e~i~~~~~m~~~~L~~~-~~~~~~~~ 79 (248)
-+++|+||||||||||++++.+ .+|++.+.+..+.. +.+.|. .+ .++++.+++++. .... ..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~-----~q----~~~l~~~~L~~~~~~~~--~~ 86 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFI-----DQ----LQFLIDVGLGYLTLGQK--LS 86 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEE-----hH----HHHHHHcCCCccccCCC--cC
Confidence 4689999999999999999853 68999987664322 112221 11 578899998753 2222 23
Q ss_pred hhhhhH--HHHHHHHHccCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 80 HLEDNL--DDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 80 ~l~~~~--~~~La~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++.++ ++.+|++++. + |+++|+|||++ +|+.++..+. +.++++.+.|.+++++
T Consensus 87 ~LSgGq~qrl~laral~~--~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvIiv 145 (176)
T cd03238 87 TLSGGELQRVKLASELFS--EPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145 (176)
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 455543 4899999999 9 99999999999 9999999998 8888886678888766
No 304
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.79 E-value=2.9e-19 Score=174.23 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC----CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~---------- 58 (248)
-.++|+||||||||||+++|+|..++. +|+|.++|.+... +.+.| .+.+||+|++.
T Consensus 52 e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (617)
T TIGR00955 52 ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR 131 (617)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC
Confidence 468999999999999999999998874 7999999986531 12223 44678888774
Q ss_pred ---------HHHHHHHhCCCCCCchhhhH----HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~----~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
++++++.+|+.+.......- ..+++++ ++.||+++.. +|+++++||||+ ||..+...++ +.
T Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~--~p~vlllDEPtsgLD~~~~~~l~-~~ 208 (617)
T TIGR00955 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT--DPPLLFCDEPTSGLDSFMAYSVV-QV 208 (617)
T ss_pred CCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc--CCCEEEeeCCCcchhHHHHHHHH-HH
Confidence 67788889987643332221 1255543 4899999999 999999999999 9999999999 88
Q ss_pred HHHHHhCCCeEEEE
Q 025795 123 VDHLKSRNFNVCAV 136 (248)
Q Consensus 123 l~~l~~~~~~ii~v 136 (248)
++++++.|.+++++
T Consensus 209 L~~l~~~g~tvi~~ 222 (617)
T TIGR00955 209 LKGLAQKGKTIICT 222 (617)
T ss_pred HHHHHhCCCEEEEE
Confidence 89987778777655
No 305
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=4.9e-19 Score=160.40 Aligned_cols=139 Identities=17% Similarity=0.291 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-----CCCceEEEeccCCCC---------CCCCC------CcccChhhhhh----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-----TVRRTMHIVNLDPAA---------ENFDY------PVAMDIRELIS---- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-----~~~G~i~i~~~d~~~---------~~~~y------~~~~~i~e~i~---- 58 (248)
-+++|+||||||||||+++|+|+.+ |++|+|.++|.+... ..+.| ....++++++.
T Consensus 109 e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~ 188 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR 188 (329)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH
Confidence 4689999999999999999999986 579999999987631 12222 12457777765
Q ss_pred -------------HHHHHHHhCCCCCCc--hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGG--LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~--~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
+.++++.+++.+... .-.....+++++ +++|||+++. +|+++|+||||+ ||+.+...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~--~p~IlLLDEPts~LD~~~~~~i~- 265 (329)
T PRK14257 189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL--EPEVLLMDEPTSALDPIATAKIE- 265 (329)
T ss_pred hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-
Confidence 123355666532100 001123345543 4899999999 999999999999 9999999977
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTK 149 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~ 149 (248)
+.++.+.+ +.+++++ +|.......
T Consensus 266 ~~i~~l~~-~~Tii~i----TH~l~~i~~ 289 (329)
T PRK14257 266 ELILELKK-KYSIIIV----THSMAQAQR 289 (329)
T ss_pred HHHHHHhc-CCEEEEE----eCCHHHHHH
Confidence 88888865 5777655 455543333
No 306
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.79 E-value=5.1e-19 Score=174.49 Aligned_cols=130 Identities=22% Similarity=0.224 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| ++ +-|++|++. +
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i 571 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEI 571 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHH
Confidence 3589999999999999999999999999999999987642 23334 22 347888875 3
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.|-.. ..-..+++|+ +.+|||++.. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 572 ~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~--~p~iliLDE~Ts~LD~~te~~i~-~~l~~~~ 648 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR--DPPILLLDEPTSAMDNRSEERFK-DRLKRWL 648 (694)
T ss_pred HHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHh
Confidence 3444444432 111000 0002355544 4899999999 999999999999 9999999998 7777775
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+ +.|+++|
T Consensus 649 ~-~~T~iiI 656 (694)
T TIGR03375 649 A-GKTLVLV 656 (694)
T ss_pred C-CCEEEEE
Confidence 4 5666655
No 307
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.79 E-value=8.3e-20 Score=180.46 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| + .+-|++|++. +
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i 585 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL 585 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHH
Confidence 3589999999999999999999999999999999987632 23344 1 2447888885 3
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++.+ +|-.. ..-..+++|+ +++|||++.. +|+++||||||+ ||..+.+.+. +.+++
T Consensus 586 ~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~--~p~iliLDEptS~LD~~te~~i~-~~l~~-- 660 (710)
T TIGR03796 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR--NPSILILDEATSALDPETEKIID-DNLRR-- 660 (710)
T ss_pred HHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh--CCCEEEEECccccCCHHHHHHHH-HHHHh--
Confidence 44455444421 11000 0012355554 4899999999 999999999999 9999998888 54443
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.|+++|
T Consensus 661 -~~~T~Iii 668 (710)
T TIGR03796 661 -RGCTCIIV 668 (710)
T ss_pred -cCCEEEEE
Confidence 46777655
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.79 E-value=6.4e-19 Score=169.74 Aligned_cols=125 Identities=18% Similarity=0.094 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C--CCCCCCCCcccChhhhhhH--------------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P--AAENFDYPVAMDIRELISL-------------------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~--~~~~~~y~~~~~i~e~i~~-------------------- 59 (248)
-+++|+||||||||||+++|+|.++|++|+|.+.+.. . ..+.....+++++++++..
T Consensus 32 e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
T TIGR03719 32 AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999886421 1 1122222345566666532
Q ss_pred --------------------------------HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEe
Q 025795 60 --------------------------------EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFD 105 (248)
Q Consensus 60 --------------------------------~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilD 105 (248)
.++++.+|+.. ... ....+++++ +++||++++. +|+++|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~--~~~~LSgGqkqrv~la~al~~--~p~lLLLD 186 (552)
T TIGR03719 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA--DVTKLSGGERRRVALCRLLLS--KPDMLLLD 186 (552)
T ss_pred cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC--chhhcCHHHHHHHHHHHHHhc--CCCEEEEc
Confidence 12233444532 111 234566664 4899999999 99999999
Q ss_pred CCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 106 CPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 106 EPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|||+ ||+.++..+. ++++++ +.++|+|
T Consensus 187 EPt~~LD~~~~~~l~-~~L~~~---~~tvIii 214 (552)
T TIGR03719 187 EPTNHLDAESVAWLE-QHLQEY---PGTVVAV 214 (552)
T ss_pred CCCCCCChHHHHHHH-HHHHhC---CCeEEEE
Confidence 9999 9999998887 776665 2366554
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.79 E-value=5.1e-19 Score=170.42 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--C--CCCC-CCCcccChhhhhh--------------HHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--A--AENF-DYPVAMDIRELIS--------------LEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~--~~~~-~y~~~~~i~e~i~--------------~~~~m 63 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +. + .+.. .+.+..++++++. ..+++
T Consensus 349 e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 427 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYV 427 (552)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHH
Confidence 47899999999999999999999999999998843 21 0 1221 1334456666553 34577
Q ss_pred HHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025795 64 EELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (248)
Q Consensus 64 ~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (248)
+.+++.. ..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++. + +++++
T Consensus 428 ~~~~l~~~~~~~~--~~~LSgGe~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-~viiv--- 496 (552)
T TIGR03719 428 GRFNFKGSDQQKK--VGQLSGGERNRVHLAKTLKS--GGNVLLLDEPTNDLDVETLRALE-EALLEFA--G-CAVVI--- 496 (552)
T ss_pred HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHCC--C-eEEEE---
Confidence 8888853 21222 24566654 4899999999 999999999999 9999999988 8888762 3 55544
Q ss_pred ccccccChHHH
Q 025795 140 DSQFITDVTKF 150 (248)
Q Consensus 140 d~~~~~d~~~~ 150 (248)
+|.......+
T Consensus 497 -sHd~~~~~~~ 506 (552)
T TIGR03719 497 -SHDRWFLDRI 506 (552)
T ss_pred -eCCHHHHHHh
Confidence 4555444444
No 310
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.8e-19 Score=159.75 Aligned_cols=141 Identities=16% Similarity=0.239 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-C----CCceEEEeccCCCC-----------CCCCC---------CcccChhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T----VRRTMHIVNLDPAA-----------ENFDY---------PVAMDIRELI 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~----~~G~i~i~~~d~~~-----------~~~~y---------~~~~~i~e~i 57 (248)
-++||+|.+||||||+.+++.|+++ + .+|+|.+.|.|... ..+.+ .|-++|.+++
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi 111 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI 111 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHH
Confidence 4789999999999999999999997 3 57899999986522 11211 3344554443
Q ss_pred h------------------HHHHHHHhCCCCCC--chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHh
Q 025795 58 S------------------LEDVMEELGLGPNG--GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (248)
Q Consensus 58 ~------------------~~~~m~~~~L~~~~--~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~ 114 (248)
. +.++++.+|+.+.. ...|. ..+++++ |+.||.+++. +|++||.||||+ ||...
T Consensus 112 ~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-helSGGMrQRV~IAmala~--~P~LlIADEPTTALDvt~ 188 (316)
T COG0444 112 AEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP-HELSGGMRQRVMIAMALAL--NPKLLIADEPTTALDVTV 188 (316)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC-cccCCcHHHHHHHHHHHhC--CCCEEEeCCCcchhhHHH
Confidence 2 45677888887642 23344 3466664 4889999999 999999999998 99999
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHH
Q 025795 115 HVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 115 ~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
+.+++ ++++++++ .|.++++| +|.+.=.+.++
T Consensus 189 QaqIl-~Ll~~l~~e~~~aiilI----THDl~vva~~a 221 (316)
T COG0444 189 QAQIL-DLLKELQREKGTALILI----THDLGVVAEIA 221 (316)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEE----eCCHHHHHHhc
Confidence 99999 99999986 58888777 45554333333
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.79 E-value=4.7e-19 Score=170.82 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC----CCCCC-CCCcccChhhhhh--------------HHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----AAENF-DYPVAMDIRELIS--------------LEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~----~~~~~-~y~~~~~i~e~i~--------------~~~~m 63 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+ +. ..+.. .+.+..++++++. ..+++
T Consensus 351 e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 429 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYV 429 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHH
Confidence 47899999999999999999999999999999843 21 11221 2334556766653 24577
Q ss_pred HHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEec
Q 025795 64 EELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLL 139 (248)
Q Consensus 64 ~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~ 139 (248)
+.+++.+. .... ...+++++ ++.||++++. +|+++|+||||+ ||+.++..+. ++++++. + +++++
T Consensus 430 ~~~~l~~~~~~~~--~~~LSgG~~qrv~la~al~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~--~-tvi~v--- 498 (556)
T PRK11819 430 GRFNFKGGDQQKK--VGVLSGGERNRLHLAKTLKQ--GGNVLLLDEPTNDLDVETLRALE-EALLEFP--G-CAVVI--- 498 (556)
T ss_pred HhCCCChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhCC--C-eEEEE---
Confidence 88888532 1222 34566664 4899999999 999999999999 9999999988 8887762 4 55444
Q ss_pred ccccccChHHH
Q 025795 140 DSQFITDVTKF 150 (248)
Q Consensus 140 d~~~~~d~~~~ 150 (248)
+|.......+
T Consensus 499 -tHd~~~~~~~ 508 (556)
T PRK11819 499 -SHDRWFLDRI 508 (556)
T ss_pred -ECCHHHHHHh
Confidence 4555444443
No 312
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.79 E-value=8.8e-19 Score=169.79 Aligned_cols=130 Identities=21% Similarity=0.220 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------~ 59 (248)
-.++|+|+||||||||+++|+|+++|.+|+|.++|.+... +.+.| + .+-|++|++. +
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i 441 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEM 441 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987642 23344 1 2347888876 3
Q ss_pred HHHHHHhCCC------CCCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.|-... .-..+++| ++.+|||++.. +|+++||||||+ ||+.+...+. +.++++.
T Consensus 442 ~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~--~~~iliLDEpts~LD~~t~~~i~-~~l~~~~ 518 (588)
T PRK13657 442 RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK--DPPILILDEATSALDVETEAKVK-AALDELM 518 (588)
T ss_pred HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh
Confidence 3344444432 1110000 00124444 45899999999 999999999999 9999999998 7677764
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.++++++|
T Consensus 519 -~~~tvIii 526 (588)
T PRK13657 519 -KGRTTFII 526 (588)
T ss_pred -cCCEEEEE
Confidence 46676655
No 313
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.79 E-value=5.7e-19 Score=172.68 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCC-CCCcccChhhhhh--------------HHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENF-DYPVAMDIRELIS--------------LEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----~~~~-~y~~~~~i~e~i~--------------~~~~m 63 (248)
-+++|+||||||||||+++|+|.++|++|+|.+ |.+.. .+.. .+.+..++.+++. +.+++
T Consensus 346 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l 424 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYL 424 (635)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHH
Confidence 368999999999999999999999999999988 43221 1211 2344556666553 34456
Q ss_pred HHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 64 EELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 64 ~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+.+++.+. ... ....++++. +++||++++. +|++||+||||+ ||+.++..+. ++++++ +.++++|
T Consensus 425 ~~~~l~~~~~~~--~~~~LSgGekqRl~la~al~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~---~~tvi~v 493 (635)
T PRK11147 425 QDFLFHPKRAMT--PVKALSGGERNRLLLARLFLK--PSNLLILDEPTNDLDVETLELLE-ELLDSY---QGTVLLV 493 (635)
T ss_pred HhcCCCHHHHhC--hhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHhC---CCeEEEE
Confidence 67777431 111 134566664 4899999999 999999999999 9999987777 766665 3366555
No 314
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.79 E-value=1.6e-19 Score=163.68 Aligned_cols=128 Identities=21% Similarity=0.298 Sum_probs=106.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------------CCCCC---CcccChhhhhh------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY---PVAMDIRELIS------ 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~y---~~~~~i~e~i~------ 58 (248)
.+||+|.+|||||||-++|.+++++. |+|.+.|.+... -.-|| .|.++|.+.|.
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 57999999999999999999999886 999999987642 01234 56788888775
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+.++|++.||.|+.-..|+.+ +++++ +.+|||++.. +|+++++||||+ ||...+.++. +++
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhE-FSGGQRQRIAIARAliL--kP~~i~LDEPTSALD~SVQaQvv-~LL 469 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-FSGGQRQRIAIARALIL--KPELILLDEPTSALDRSVQAQVL-DLL 469 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcc-cCcchhhHHHHHHHHhc--CCcEEEecCCchHhhHHHHHHHH-HHH
Confidence 789999999999987777754 55554 4899999999 999999999999 9999999999 999
Q ss_pred HHHHh-CCCeEEEE
Q 025795 124 DHLKS-RNFNVCAV 136 (248)
Q Consensus 124 ~~l~~-~~~~ii~v 136 (248)
++|++ .|.+-+++
T Consensus 470 r~LQ~k~~LsYLFI 483 (534)
T COG4172 470 RDLQQKHGLSYLFI 483 (534)
T ss_pred HHHHHHhCCeEEEE
Confidence 99975 46665554
No 315
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=5.5e-19 Score=172.82 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCC--CCC--CCCCcccChhhhh----------hHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA--AEN--FDYPVAMDIRELI----------SLEDVMEELG 67 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~-~d~~--~~~--~~y~~~~~i~e~i----------~~~~~m~~~~ 67 (248)
-+++|+||||||||||+++|+|.++|++|+|.+.+ ...+ .+. ....+..++.+.+ .+.++++.++
T Consensus 339 e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 418 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFG 418 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999852 1111 111 0112222333332 2567888888
Q ss_pred CCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 68 LGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 68 L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+.+. .... ...++++. +++||++++. +|++|||||||+ ||+.++..+. ++++++ .| ++++|
T Consensus 419 l~~~~~~~~--~~~LSgGekqRl~La~~l~~--~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~--~g-tvi~v 483 (638)
T PRK10636 419 FQGDKVTEE--TRRFSGGEKARLVLALIVWQ--RPNLLLLDEPTNHLDLDMRQALT-EALIDF--EG-ALVVV 483 (638)
T ss_pred CChhHhcCc--hhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-eEEEE
Confidence 8542 2222 34566664 4899999999 999999999999 9999999888 877776 24 66555
No 316
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.78 E-value=8.3e-19 Score=169.07 Aligned_cols=130 Identities=18% Similarity=0.117 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------- 58 (248)
-.++|+|+||||||||+++|+|+++|++|+|.++|.+... +.+.| -.+-|++|++.
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 3689999999999999999999999999999999976532 23333 22457887765
Q ss_pred HHHHHHHhCCCC------CCch--h-hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 LEDVMEELGLGP------NGGL--I-YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ~~~~m~~~~L~~------~~~~--~-~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++..|+.+ +|-. + ..-..+++| ++.+|||++.. +|+++++||||+ ||..+.+.+. +.++++
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~--~~~illLDEpts~LD~~~~~~i~-~~L~~~ 515 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK--DAPILILDEATSALDNESERLVQ-AALERL 515 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCccccCCHHHHHHHH-HHHHHH
Confidence 344555555431 1100 0 000235554 44899999999 999999999999 9999999998 777777
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
. .++++++|
T Consensus 516 ~-~~~tiIii 524 (571)
T TIGR02203 516 M-QGRTTLVI 524 (571)
T ss_pred h-CCCEEEEE
Confidence 4 45676655
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=1.2e-18 Score=154.81 Aligned_cols=130 Identities=19% Similarity=0.142 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhhh---------HHHHHHHhCCCCC-
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEELGLGPN- 71 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~~~- 71 (248)
-+++|+||||||||||+++|+|.++|++|+|.++|. ....+...+.+ .++++++. +.+.++.+++.+.
T Consensus 64 e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l 142 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDI 142 (282)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHH
Confidence 468999999999999999999999999999998762 00111111122 26666543 1333444444211
Q ss_pred -----Cc---hhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 72 -----GG---LIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 72 -----~~---~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+. .......+++++ ++.||++++. +|+++|+|||++ ||+.++..+...+++.+. .+.+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~--~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiii 215 (282)
T cd03291 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILV 215 (282)
T ss_pred HhccccccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 00 000012345543 4899999999 999999999999 999999888833455664 46676655
No 318
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=170.40 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|.++|++|++.++|.++.. +.+.| .+..++.|++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999976431 12222 23446565543
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ ++.||++++. +|+++|+|||+. ||+.+++.+. +++++
T Consensus 115 ~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~--~P~lLllDEP~~gLD~~s~~~l~-~ll~~ 189 (648)
T PRK10535 115 GLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMN--GGQVILADEPTGALDSHSGEEVM-AILHQ 189 (648)
T ss_pred CCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHH
Confidence 45667778876542222 23455543 4899999999 999999999999 9999999999 99999
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+++++.+++++
T Consensus 190 l~~~g~tiliv 200 (648)
T PRK10535 190 LRDRGHTVIIV 200 (648)
T ss_pred HHhcCCEEEEE
Confidence 87667787665
No 319
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=6.6e-19 Score=155.88 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~ 60 (248)
-+++|+||||||||||+++|+|+++ .+|+|.++|.+++. ..+.| ++ ..++++++. +.
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~ 109 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence 4689999999999999999999998 78999999976532 12222 11 226666663 45
Q ss_pred HHHHHhCCCCCCchhhh-H--------HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGPNGGLIYC-M--------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~~~~~~~~-~--------~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++.+|+.+....... + ..++.++ ++.||++++. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 110 ~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~--~p~illlDEpts~LD~~~~~~l~-~~l~~~~- 185 (275)
T cd03289 110 KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPITYQVIR-KTLKQAF- 185 (275)
T ss_pred HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc-
Confidence 56777777532111000 0 0144443 4899999999 999999999999 9999998888 8788764
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
.+.++++|
T Consensus 186 ~~~tii~i 193 (275)
T cd03289 186 ADCTVILS 193 (275)
T ss_pred CCCEEEEE
Confidence 47777666
No 320
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.78 E-value=1.2e-18 Score=167.93 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhh-------hHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELI-------SLEDV 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i-------~~~~~ 62 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ++ +-+++++. .+.++
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 448 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY 448 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHH
Confidence 4689999999999999999999999999999999987642 22333 12 12444432 25667
Q ss_pred HHHhCCCCCCchh----hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 63 MEELGLGPNGGLI----YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 63 m~~~~L~~~~~~~----~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
++.+++.+.-... .....+++++ +++|||++.. +|+++|+||||+ ||+.+.+.+.+.+++.++..+.++++
T Consensus 449 ~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~--~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 449 LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE--DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 8888876431110 0013465554 4899999999 999999999999 99999999884566556556778766
Q ss_pred E
Q 025795 136 V 136 (248)
Q Consensus 136 v 136 (248)
+
T Consensus 527 i 527 (555)
T TIGR01194 527 I 527 (555)
T ss_pred E
Confidence 6
No 321
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.78 E-value=1.4e-18 Score=171.13 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~---------~~ 60 (248)
-.++|+||||||||||+|+|+|+++|++|+|.++|.|... +.+.| + .+-|++|++. +.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~ 559 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAW 559 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHH
Confidence 3689999999999999999999999999999999987643 23444 2 2347888885 34
Q ss_pred HHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++..++.+ .|-.. ..-..+++++ +.+|||++.. +|+++||||||+ ||+.+.+.+. +.++++
T Consensus 560 ~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~--~p~iLiLDEpTS~LD~~te~~i~-~~L~~~-- 634 (686)
T TIGR03797 560 EAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR--KPRILLFDEATSALDNRTQAIVS-ESLERL-- 634 (686)
T ss_pred HHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHh--
Confidence 4555555431 11000 0012355554 4899999999 999999999999 9999998888 656655
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
+.|+++|
T Consensus 635 -~~T~IiI 641 (686)
T TIGR03797 635 -KVTRIVI 641 (686)
T ss_pred -CCeEEEE
Confidence 4566555
No 322
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.78 E-value=7.6e-19 Score=177.14 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-Cc------ccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PV------AMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~------~~~i~e~i~--------- 58 (248)
-|.|++|||||||||+++++.|..+|++|++.+.|.+... +.++| |+ .+|.||.+.
T Consensus 592 ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~ 671 (885)
T KOG0059|consen 592 ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLP 671 (885)
T ss_pred ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999987743 44677 32 567888774
Q ss_pred -------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 -------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 -------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++..++.++|.+.+... ...++++.+ ..+|.++.. +|+++++|||++ +||.+++.++ ++++++++
T Consensus 672 ~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig--~p~vi~LDEPstGmDP~arr~lW-~ii~~~~k 746 (885)
T KOG0059|consen 672 RSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIG--DPSVILLDEPSTGLDPKARRHLW-DIIARLRK 746 (885)
T ss_pred hhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhc--CCCEEEecCCCCCCCHHHHHHHH-HHHHHHHh
Confidence 67788889999887665 344666543 777778888 999999999999 9999999999 99999988
Q ss_pred CCCeEEEEEecccccccChHHHHHHHHHHHHHHH-hhCCCe
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPH 168 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~-~~~~p~ 168 (248)
+|..++ +.+|.+.+.+-.|+++.....+++ .+|.|+
T Consensus 747 ~g~aii----LTSHsMeE~EaLCtR~aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 747 NGKAII----LTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ 783 (885)
T ss_pred cCCEEE----EEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence 766664 448999999999888766554444 335544
No 323
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.78 E-value=1.4e-18 Score=167.71 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|.+|+|.++|.+... +.+.| ..+-|++|++. +
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 446 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEV 446 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHH
Confidence 3589999999999999999999999999999999976532 23444 12447888776 3
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |+|-.. ..-..+++| ++..+||++.. +|+++|+||||+ +|..+.+.+. +.++++.
T Consensus 447 ~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~--~~~ililDEpts~lD~~~~~~i~-~~l~~~~ 523 (576)
T TIGR02204 447 EAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK--DAPILLLDEATSALDAESEQLVQ-QALETLM 523 (576)
T ss_pred HHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh--CCCeEEEeCcccccCHHHHHHHH-HHHHHHh
Confidence 3444444442 111000 001235554 44899999999 999999999999 9999998888 7777774
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.++++|
T Consensus 524 -~~~t~Iii 531 (576)
T TIGR02204 524 -KGRTTLII 531 (576)
T ss_pred -CCCEEEEE
Confidence 46676655
No 324
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.78 E-value=1.4e-18 Score=167.97 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-|++|++. +
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 421 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEI 421 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999976532 12223 11347888775 3
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.|-.. .....+++++ +.+|||++.. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~--~~~illlDEpts~LD~~~~~~i~-~~l~~~~ 498 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL--NAEILILDDALSAVDGRTEHQIL-HNLRQWG 498 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECccccCCHHHHHHHH-HHHHHHh
Confidence 4445544442 111000 0012355544 4899999999 999999999999 9999999998 7777774
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
++.+++++
T Consensus 499 -~~~tii~i 506 (569)
T PRK10789 499 -EGRTVIIS 506 (569)
T ss_pred -CCCEEEEE
Confidence 46777655
No 325
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.5e-18 Score=169.65 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCC-C-------CCCC-c------ccCh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAE-N-------FDYP-V------AMDI----------- 53 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~-~-------~~y~-~------~~~i----------- 53 (248)
-+++|+||||||||||+|+|+|.++|++|+|.+.|... ..+ . +.|. + .++.
T Consensus 28 e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 107 (638)
T PRK10636 28 QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDG 107 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCH
Confidence 46899999999999999999999999999999876421 000 0 0110 0 0000
Q ss_pred ------hh----------hhhHHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHH
Q 025795 54 ------RE----------LISLEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELF 113 (248)
Q Consensus 54 ------~e----------~i~~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~ 113 (248)
.. .-.+.++++.+|+.+ ..... ...+++++ ++.||++|+. +|++|||||||+ ||+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~--~~~LSgGerqRv~LA~aL~~--~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 108 HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP--VSDFSGGWRMRLNLAQALIC--RSDLLLLDEPTNHLDLD 183 (638)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc--hhhcCHHHHHHHHHHHHHcc--CCCEEEEcCCCCcCCHH
Confidence 00 002456778888853 22222 35566765 4899999999 999999999999 9999
Q ss_pred hHHHHHHHHHHHHHhCCCeEEEE
Q 025795 114 THVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 114 ~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+...+. ++++++ +.++++|
T Consensus 184 ~~~~L~-~~L~~~---~~tviiv 202 (638)
T PRK10636 184 AVIWLE-KWLKSY---QGTLILI 202 (638)
T ss_pred HHHHHH-HHHHhC---CCeEEEE
Confidence 997766 666554 4566655
No 326
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.77 E-value=2e-18 Score=167.43 Aligned_cols=130 Identities=21% Similarity=0.226 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-+++|++. +
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~ 441 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV 441 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999876432 12222 22447787775 2
Q ss_pred HHHHHHhCCC------CCCch---hhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGL---IYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~---~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |+|-. -.....++++ +++.|||++.. +|+++|+||||+ ||..+.+.+. +.++++.
T Consensus 442 ~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~--~p~ililDEpts~LD~~~~~~i~-~~l~~~~ 518 (585)
T TIGR01192 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK--NAPILVLDEATSALDVETEARVK-NAIDALR 518 (585)
T ss_pred HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHh
Confidence 2223322221 11100 0001235554 34899999999 999999999999 9999999988 7777774
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.+++++
T Consensus 519 -~~~tvI~i 526 (585)
T TIGR01192 519 -KNRTTFII 526 (585)
T ss_pred -CCCEEEEE
Confidence 46777665
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.77 E-value=1.7e-18 Score=166.63 Aligned_cols=131 Identities=18% Similarity=0.084 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhh---h---hHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIREL---I---SLEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~---i---~~~~~m 63 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ +-+++++ . .+.+++
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~ 429 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWL 429 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHH
Confidence 4689999999999999999999999999999999987542 23333 22 2234433 1 256677
Q ss_pred HHhCCCCCCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 025795 64 EELGLGPNGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV 136 (248)
Q Consensus 64 ~~~~L~~~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v 136 (248)
+.++++..-.... .-..+++++ +.+|||++.. +|+++|+||||+ ||+.+...+. +.+.+ +++.+.++++|
T Consensus 430 ~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~--~~~ililDE~ts~LD~~~~~~i~-~~l~~~~~~~~~tvi~i 506 (547)
T PRK10522 430 ERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE--ERDILLLDEWAADQDPHFRREFY-QVLLPLLQEMGKTIFAI 506 (547)
T ss_pred HHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE
Confidence 7777764311100 012355554 4899999999 999999999999 9999999888 55544 33347777665
No 328
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.77 E-value=2.2e-18 Score=166.41 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~ 59 (248)
-.++|+||+||||||+++.|.|+++|++|+|.++|.|... +.++| +| +-||++++. +
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 3589999999999999999999999999999999987643 33333 21 347888876 2
Q ss_pred HHHHHHhCCC------CCCchhhh---HHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLIYC---MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~~~---~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |+|-.... -..++++ ++.+|||++.. +|+++||||||+ +|..+...+. +.++++.
T Consensus 436 ~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~--~~~ILILDEaTSalD~~tE~~I~-~~l~~l~ 512 (567)
T COG1132 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR--NPPILILDEATSALDTETEALIQ-DALKKLL 512 (567)
T ss_pred HHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc--CCCEEEEeccccccCHHhHHHHH-HHHHHHh
Confidence 2233222110 21110000 1234444 44899999999 999999999999 9999999988 7777775
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+++|+++|
T Consensus 513 -~~rT~iiI 520 (567)
T COG1132 513 -KGRTTLII 520 (567)
T ss_pred -cCCEEEEE
Confidence 45455444
No 329
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.77 E-value=1.2e-18 Score=172.29 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~----------- 58 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| + .+-|++|++.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~ 580 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE 580 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHH
Confidence 3589999999999999999999999999999999987532 23333 1 2347777765
Q ss_pred HHHHHHHhCCC------CCCch--h-hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 LEDVMEELGLG------PNGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ~~~~m~~~~L~------~~~~~--~-~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++..++. |.|-. + ..-..+++++ +.+|||++.. +|+++||||||+ ||..+...+. +.++++
T Consensus 581 i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~--~p~iliLDE~Ts~LD~~te~~i~-~~L~~~ 657 (708)
T TIGR01193 581 IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT--DSKVLILDESTSNLDTITEKKIV-NNLLNL 657 (708)
T ss_pred HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCccccCCHHHHHHHH-HHHHHh
Confidence 23344444432 11100 0 0012345544 4899999999 999999999999 9999999888 666665
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
.+.|+++|
T Consensus 658 --~~~T~Iii 665 (708)
T TIGR01193 658 --QDKTIIFV 665 (708)
T ss_pred --cCCEEEEE
Confidence 35676655
No 330
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.77 E-value=5.7e-19 Score=139.43 Aligned_cols=105 Identities=25% Similarity=0.267 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhh---hHHHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELI---SLEDVMEE 65 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i---~~~~~m~~ 65 (248)
-+++|+||||||||||+++|+|..+|.+|+|.++|.+... ..+.| .+..+++++. .++++++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~ 91 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEEVLKK 91 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHH
T ss_pred CEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999999999999999877643 12222 2345677664 37788888
Q ss_pred hCCCCCCchhh--hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc
Q 025795 66 LGLGPNGGLIY--CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 66 ~~L~~~~~~~~--~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~ 109 (248)
+++........ ....++.+. +++||+++.. +|+++|+||||+
T Consensus 92 l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~--~~~llllDEPt~ 137 (137)
T PF00005_consen 92 LGLEDLLDRKIGQRASSLSGGEKQRLALARALLK--NPKLLLLDEPTN 137 (137)
T ss_dssp TTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT--TSSEEEEESTTT
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHc--CCCEEEEeCCCC
Confidence 88765322221 114455543 4899999999 999999999996
No 331
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=2.2e-18 Score=170.06 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+-|++|++. +
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i 563 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999987642 22333 12347788775 2
Q ss_pred HHHHHHhCCCC------CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGP------NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~------~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++.+ +|-.. ..-..+++++ +.+|||++.. +|+++|+||||+ ||..+...+. +.++++.
T Consensus 564 ~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~--~~~ililDEpts~LD~~~~~~i~-~~l~~~~ 640 (694)
T TIGR01846 564 IHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG--NPRILIFDEATSALDYESEALIM-RNMREIC 640 (694)
T ss_pred HHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHh
Confidence 33344433321 11000 0012355554 4899999999 999999999999 9999999998 7777774
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.+++++
T Consensus 641 -~~~t~i~i 648 (694)
T TIGR01846 641 -RGRTVIII 648 (694)
T ss_pred -CCCEEEEE
Confidence 46777655
No 332
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=7.5e-19 Score=145.92 Aligned_cols=137 Identities=18% Similarity=0.294 Sum_probs=103.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCCC---------------CCCCCCcccChhhhhh---------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPAA---------------ENFDYPVAMDIRELIS--------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~-~d~~~---------------~~~~y~~~~~i~e~i~--------- 58 (248)
.-+||||||+||||++..|+|--+|+.|++++.| .|... +....+.+++|+|++.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 4579999999999999999999999999999998 66532 1112245778888875
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 59 ---------------LEDVMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
++++++..||++..... ...++.++++||.-.+....+|++|++|||.+ +--....+.. ++
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~--A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eL 189 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDERDRL--AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-EL 189 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhhhhh--hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HH
Confidence 78999999999887665 34577777677655444333999999999998 7666667778 89
Q ss_pred HHHHHhCCCeEEEEEeccccccc
Q 025795 123 VDHLKSRNFNVCAVYLLDSQFIT 145 (248)
Q Consensus 123 l~~l~~~~~~ii~v~l~d~~~~~ 145 (248)
++.+++ +.++++| -+|..|+.
T Consensus 190 l~~la~-~hsilVV-EHDM~Fvr 210 (249)
T COG4674 190 LKSLAG-KHSILVV-EHDMGFVR 210 (249)
T ss_pred HHHHhc-CceEEEE-eccHHHHH
Confidence 999854 5666555 46666654
No 333
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.6e-18 Score=168.42 Aligned_cols=133 Identities=21% Similarity=0.288 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC---CCceEEEeccCCCC-----------CCCCCCcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA-----------ENFDYPVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~---~~G~i~i~~~d~~~-----------~~~~y~~~~~i~e~i~---------- 58 (248)
-+.||+||+|||||||+++|+|.... .+|+|.++|..... |.-.+.+.+||+|.+.
T Consensus 57 el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~ 136 (613)
T KOG0061|consen 57 ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS 136 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC
Confidence 47899999999999999999999864 68999999954322 3333456789999885
Q ss_pred ---------HHHHHHHhCCCCCCchhhhH---Hhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCM---EHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~---~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
++++++++||..-...+..- .-+++ +.|+.+|..+.. +|.++++||||+ ||..+...++ +++
T Consensus 137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~--~P~iLflDEPTSGLDS~sA~~vv-~~L 213 (613)
T KOG0061|consen 137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT--DPSILFLDEPTSGLDSFSALQVV-QLL 213 (613)
T ss_pred CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc--CCCEEEecCCCCCcchhhHHHHH-HHH
Confidence 88999999987432211100 11222 334999999999 999999999999 9999999999 999
Q ss_pred HHHHhCCCeEEEE-Ee
Q 025795 124 DHLKSRNFNVCAV-YL 138 (248)
Q Consensus 124 ~~l~~~~~~ii~v-~l 138 (248)
+++++.|.+||++ |-
T Consensus 214 k~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 214 KRLARSGRTVICTIHQ 229 (613)
T ss_pred HHHHhCCCEEEEEEeC
Confidence 9999888887754 53
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.77 E-value=2e-18 Score=168.84 Aligned_cols=124 Identities=18% Similarity=0.195 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC--------CCCCCCCC-Cccc----------------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--------PAAENFDY-PVAM---------------------- 51 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d--------~~~~~~~y-~~~~---------------------- 51 (248)
-+++|+||||||||||+++|+|.++|++|+|.+.+.. +......+ .+.+
T Consensus 30 e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (635)
T PRK11147 30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE 109 (635)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999987621 00000111 0000
Q ss_pred --Chhhh--------------------hhHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCC
Q 025795 52 --DIREL--------------------ISLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCP 107 (248)
Q Consensus 52 --~i~e~--------------------i~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEP 107 (248)
+..++ -.+.++++.+|+.++ . ....+++++ +++||++|+. +|++||+|||
T Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--~--~~~~LSgGekqRv~LAraL~~--~P~lLLLDEP 183 (635)
T PRK11147 110 TDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD--A--ALSSLSGGWLRKAALGRALVS--NPDVLLLDEP 183 (635)
T ss_pred cCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC--C--chhhcCHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 00000 024566777777532 2 234566664 4999999999 9999999999
Q ss_pred Cc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 108 GQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 108 t~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|+ ||+.+...+. ++++++ +.++++|
T Consensus 184 t~~LD~~~~~~L~-~~L~~~---~~tvliv 209 (635)
T PRK11147 184 TNHLDIETIEWLE-GFLKTF---QGSIIFI 209 (635)
T ss_pred CCccCHHHHHHHH-HHHHhC---CCEEEEE
Confidence 99 9999998877 777766 2466555
No 335
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.76 E-value=2.3e-18 Score=170.39 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-.++|+|||||||||++++|.|+++|++|+|.++|.+... +.+.| ..+-|+||++. +
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i 587 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEI 587 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHH
Confidence 3689999999999999999999999999999999977532 22333 22458888886 3
Q ss_pred HHHHHHhCCCC------CCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGP------NGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~------~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++.+ +|-... .-..++++ ++.+|||++.. +|+++|+||||+ ||..+.+.+. + .. .
T Consensus 588 ~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~--~p~ILILDEpTSaLD~~te~~i~-~-~~--~ 661 (711)
T TIGR00958 588 MAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR--KPRVLILDEATSALDAECEQLLQ-E-SR--S 661 (711)
T ss_pred HHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEEccccccCHHHHHHHH-H-hh--c
Confidence 34455444421 110000 00234444 45899999999 999999999999 9999987777 4 21 2
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
..++|+++|
T Consensus 662 ~~~~TvIiI 670 (711)
T TIGR00958 662 RASRTVLLI 670 (711)
T ss_pred cCCCeEEEE
Confidence 346777665
No 336
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.1e-18 Score=143.56 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCCceEEEeccCCCCC------------CCCCC---cccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVRRTMHIVNLDPAAE------------NFDYP---VAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~G~i~i~~~d~~~~------------~~~y~---~~~~i~e~i~------- 58 (248)
.+++|+||||||||||.++|+|+- ++++|+|.++|.|...- .+.|| |.+++.+++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~ 110 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhh
Confidence 578999999999999999999985 78999999999887430 12233 2344444443
Q ss_pred ------------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 59 ------------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 59 ------------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
+++.++.+++.+.-..++.-+-++++ -|..|...++. +|++.|||||-+ ||..+-+.+. +-+
T Consensus 111 ~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~DSGLDIdalk~V~-~~i 187 (251)
T COG0396 111 GARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPDSGLDIDALKIVA-EGI 187 (251)
T ss_pred ccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCCcCccHHHHHHHH-HHH
Confidence 56778888888732222222334433 23778888888 999999999999 9999998888 999
Q ss_pred HHHHhCCCeEEEE
Q 025795 124 DHLKSRNFNVCAV 136 (248)
Q Consensus 124 ~~l~~~~~~ii~v 136 (248)
+++++.|.+++++
T Consensus 188 ~~lr~~~~~~liI 200 (251)
T COG0396 188 NALREEGRGVLII 200 (251)
T ss_pred HHHhcCCCeEEEE
Confidence 9998888887665
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=99.76 E-value=2.7e-18 Score=179.97 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC----CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..++| .+.+||+|++.
T Consensus 907 el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~ 986 (1470)
T PLN03140 907 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV 986 (1470)
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC
Confidence 46899999999999999999999763 68999999976531 12223 34568887763
Q ss_pred --------HHHHHHHhCCCCCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
++++++.++|.+....... ...+++++ ++.||++|+. +|+++++||||+ ||..+...++ ++++
T Consensus 987 ~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~--~P~lL~LDEPTsgLD~~~a~~v~-~~L~ 1063 (1470)
T PLN03140 987 SKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVA--NPSIIFMDEPTSGLDARAAAIVM-RTVR 1063 (1470)
T ss_pred CHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 4567888888754332211 12355544 4899999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025795 125 HLKSRNFNVCAV 136 (248)
Q Consensus 125 ~l~~~~~~ii~v 136 (248)
++++.|.+++++
T Consensus 1064 ~l~~~g~tVI~t 1075 (1470)
T PLN03140 1064 NTVDTGRTVVCT 1075 (1470)
T ss_pred HHHHCCCEEEEE
Confidence 998778887655
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.76 E-value=5.2e-18 Score=177.73 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC---CCCceEEEeccCCCC---CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE---TVRRTMHIVNLDPAA---ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~---~~~G~i~i~~~d~~~---~~~~y-------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|..+ +++|+|.++|.+... +.++| .+..|++|++.
T Consensus 790 e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~ 869 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSV 869 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999987 688999999977531 22333 33568888764
Q ss_pred --------HHHHHHHhCCCCCCchhhh--HHhhhhhH--HHHHHHHHccCCCCC-EEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYC--MEHLEDNL--DDWLAEELDNYLDDD-YLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~--~~~l~~~~--~~~La~~l~~~~~p~-~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
++++++.+++.+....... ...+++++ ++.||++++. +|+ ++++||||+ ||..+...++ ++++
T Consensus 870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~--~P~~iLlLDEPTsgLD~~~~~~i~-~~L~ 946 (1394)
T TIGR00956 870 SKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA--KPKLLLFLDEPTSGLDSQTAWSIC-KLMR 946 (1394)
T ss_pred CHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc--CCCeEEEEcCCCCCCCHHHHHHHH-HHHH
Confidence 3567888888754332211 01244443 4899999999 997 999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025795 125 HLKSRNFNVCAV 136 (248)
Q Consensus 125 ~l~~~~~~ii~v 136 (248)
+++++|.+++++
T Consensus 947 ~la~~g~tvI~t 958 (1394)
T TIGR00956 947 KLADHGQAILCT 958 (1394)
T ss_pred HHHHcCCEEEEE
Confidence 997778887655
No 339
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.75 E-value=3.6e-18 Score=158.43 Aligned_cols=125 Identities=25% Similarity=0.313 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cccc-----Chhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PVAM-----DIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~~~-----~i~e~i~----------- 58 (248)
-.++||||+|||||||.|.|.|..+|.+|.|.++|-|... ++++| +|++ ||.|+|.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kI 442 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKV 442 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHH
Confidence 3689999999999999999999999999999999977643 57788 4443 7888875
Q ss_pred --------HHHHHHHhC------CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 --------LEDVMEELG------LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 --------~~~~m~~~~------L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.|++-.+- +|+-| ..+++++ +..|||++.. +|.+++||||-+ ||......+. +
T Consensus 443 ieAA~lAgvHelIl~lP~GYdT~iG~~G------~~LSgGQRQRIaLARAlYG--~P~lvVLDEPNsNLD~~GE~AL~-~ 513 (580)
T COG4618 443 IEAARLAGVHELILRLPQGYDTRIGEGG------ATLSGGQRQRIALARALYG--DPFLVVLDEPNSNLDSEGEAALA-A 513 (580)
T ss_pred HHHHHHcChHHHHHhCcCCccCccCCCC------CCCCchHHHHHHHHHHHcC--CCcEEEecCCCCCcchhHHHHHH-H
Confidence 333333221 23333 2355554 4889999999 999999999998 9999999988 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025795 122 FVDHLKSRNFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (248)
.+..++++|.++++|
T Consensus 514 Ai~~~k~rG~~vvvi 528 (580)
T COG4618 514 AILAAKARGGTVVVI 528 (580)
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888888777665
No 340
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=4.8e-18 Score=171.29 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC-------CCC------CCcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE-------NFD------YPVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~-------~~~------y~~~~~i~e~i~----------~ 59 (248)
..++++||+||||||++++|.+++.|++|+|.++|.|...- .++ ...+.||+|+|. +
T Consensus 380 ~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 380 QTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHH
Confidence 46899999999999999999999999999999999887541 121 222567888875 2
Q ss_pred HHHHHHhC---------------CCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 60 EDVMEELG---------------LGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 60 ~~~m~~~~---------------L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+++.+..+ .|+.|. .++++ +|++|||++.. +|++|||||||+ ||+.+.+.+. +
T Consensus 460 ~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIARalv~--~P~ILLLDEaTSaLD~~se~~Vq-~ 530 (1228)
T KOG0055|consen 460 EEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESERVVQ-E 530 (1228)
T ss_pred HHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHHHHHHh--CCCEEEecCcccccCHHHHHHHH-H
Confidence 22222111 233331 14554 45999999999 999999999999 9999998887 8
Q ss_pred HHHHHHhCCCeEEEEEeccc
Q 025795 122 FVDHLKSRNFNVCAVYLLDS 141 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~l~d~ 141 (248)
.+++..+...|+++.|-+++
T Consensus 531 ALd~~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 531 ALDKASKGRTTIVVAHRLST 550 (1228)
T ss_pred HHHHhhcCCeEEEEeeehhh
Confidence 88887543344444555444
No 341
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=134.98 Aligned_cols=129 Identities=15% Similarity=0.143 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhhh------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS------------ 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---~~---~~~i~e~i~------------ 58 (248)
.++|+||+|||||||+|+++-++.|++|.+++.|.+... +.+.| .| .-+|+|++-
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr 110 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDR 110 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCCh
Confidence 578999999999999999999999999999999987643 22333 11 125555542
Q ss_pred --HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCe
Q 025795 59 --LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFN 132 (248)
Q Consensus 59 --~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ 132 (248)
+.+.+++++++..--. .....++++ ++.+|+|.|.. -|++|++||||+ ||+.+.+.+- +++.++. .++..
T Consensus 111 ~aa~~llar~~l~~~~L~-k~it~lSGGE~QriAliR~Lq~--~P~ILLLDE~TsALD~~nkr~ie-~mi~~~v~~q~vA 186 (223)
T COG4619 111 AAALDLLARFALPDSILT-KNITELSGGEKQRIALIRNLQF--MPKILLLDEITSALDESNKRNIE-EMIHRYVREQNVA 186 (223)
T ss_pred HHHHHHHHHcCCchhhhc-chhhhccchHHHHHHHHHHhhc--CCceEEecCchhhcChhhHHHHH-HHHHHHhhhhceE
Confidence 6788889998764211 112334443 45899999988 999999999999 9999999988 8888876 45666
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
++.|
T Consensus 187 v~Wi 190 (223)
T COG4619 187 VLWI 190 (223)
T ss_pred EEEE
Confidence 6655
No 342
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.75 E-value=2e-17 Score=136.43 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------------CCCCCCcccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDYPVAMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~y~~~~~i~e~i~-------- 58 (248)
-.++|||.||||||||.|+++|.++|++|+|.+++..... .+..+.|.+.|...+.
T Consensus 40 QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~ 119 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTD 119 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhccc
Confidence 3579999999999999999999999999999999865432 1122233333333222
Q ss_pred ---------HHHHHHHhCCCCCCchhhhH-HhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCM-EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~-~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
+-+-++.+||-|..+..+.. -..+.++++++|||+.. +|+++|.||.-. ||...+.++. ++.-+|+
T Consensus 120 ~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL--~P~iIIaDeAl~~LD~smrsQl~-NL~LeLQ 196 (267)
T COG4167 120 LEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALIL--RPKIIIADEALASLDMSMRSQLI-NLMLELQ 196 (267)
T ss_pred CChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhc--CCcEEEehhhhhhccHHHHHHHH-HHHHHHH
Confidence 67788899998887666542 22233466999999999 999999999987 9999999999 8888887
Q ss_pred h-CCCeEEEE
Q 025795 128 S-RNFNVCAV 136 (248)
Q Consensus 128 ~-~~~~ii~v 136 (248)
+ .|.+-+.|
T Consensus 197 ek~GiSyiYV 206 (267)
T COG4167 197 EKQGISYIYV 206 (267)
T ss_pred HHhCceEEEE
Confidence 5 47666544
No 343
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.2e-18 Score=158.02 Aligned_cols=131 Identities=22% Similarity=0.230 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~~ 60 (248)
-+||+|+|||||||++|+|.+++. .+|+|.++|+|... +.++| || +-||..++. +.
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVV 458 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHH
Confidence 489999999999999999999999 99999999998743 34455 33 235555554 44
Q ss_pred HHHHHhCCCC------CC-----chhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 61 DVMEELGLGP------NG-----GLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 61 ~~m~~~~L~~------~~-----~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++.+++|+.+ .| +.. ...++++ ++++++|++.. +|+++++||||+ ||..+.++++ +.+...
T Consensus 459 e~~k~a~~hd~i~~l~~GY~T~VGer--G~~LSGGekQrvslaRa~lK--da~Il~~DEaTS~LD~~TE~~i~-~~i~~~ 533 (591)
T KOG0057|consen 459 EACKRAGLHDVISRLPDGYQTLVGER--GLMLSGGEKQRVSLARAFLK--DAPILLLDEATSALDSETEREIL-DMIMDV 533 (591)
T ss_pred HHHHHcCcHHHHHhccccchhhHhhc--ccccccchHHHHHHHHHHhc--CCCeEEecCcccccchhhHHHHH-HHHHHh
Confidence 4445555432 11 111 1234443 55999999999 999999999999 9999999999 666663
Q ss_pred HhCCCeEEEE-Eeccc
Q 025795 127 KSRNFNVCAV-YLLDS 141 (248)
Q Consensus 127 ~~~~~~ii~v-~l~d~ 141 (248)
..++|+|+| |.+|.
T Consensus 534 -~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 534 -MSGRTVIMIVHRLDL 548 (591)
T ss_pred -cCCCeEEEEEecchh
Confidence 346676654 65443
No 344
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3e-17 Score=157.79 Aligned_cols=124 Identities=21% Similarity=0.283 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---Cc---ccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---PV---AMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---~~---~~~i~e~i~----------- 58 (248)
-+++++||+||||||..+.|..++.|++|+|.++|.|... +.+++ .| .-+|+|+|.
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i 574 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI 574 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHH
Confidence 4799999999999999999999999999999999988743 22222 11 347777775
Q ss_pred --------HHHHHHHh------CCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 --------LEDVMEEL------GLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 --------~~~~m~~~------~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.+.+..+ ..|+.|. .++++ +|.+|||||.. +|.+|||||.|+ ||..+...+- +
T Consensus 575 ~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr--~P~VLILDEATSALDaeSE~lVq-~ 645 (716)
T KOG0058|consen 575 EAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLR--NPRVLILDEATSALDAESEYLVQ-E 645 (716)
T ss_pred HHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhc--CCCEEEEechhhhcchhhHHHHH-H
Confidence 22222222 1334442 34554 45899999999 999999999999 9999987776 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025795 122 FVDHLKSRNFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (248)
.+.++.+ +.|+++|
T Consensus 646 aL~~~~~-~rTVlvI 659 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVI 659 (716)
T ss_pred HHHHhhc-CCeEEEE
Confidence 8887755 4677655
No 345
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.74 E-value=1.5e-17 Score=174.86 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC------------------------------------------------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET------------------------------------------------------ 28 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~------------------------------------------------------ 28 (248)
-.++|+||+||||||++++|.|++.|
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46899999999999999999999998
Q ss_pred CCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------HHHHHHHhCCC------CCCchhh---
Q 025795 29 VRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------LEDVMEELGLG------PNGGLIY--- 76 (248)
Q Consensus 29 ~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~~~~m~~~~L~------~~~~~~~--- 76 (248)
++|+|.++|.|... +.+.| -.+-||+|++. ++++++..++. |+|-.-.
T Consensus 1275 ~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe 1354 (1466)
T PTZ00265 1275 NSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGP 1354 (1466)
T ss_pred CCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCC
Confidence 59999999988642 33444 22568999886 44445444432 1110000
Q ss_pred hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025795 77 CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (248)
Q Consensus 77 ~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v 136 (248)
.-..+++|+ |.+|||||.. +|++|||||||+ ||..+.+.+. +.+.++. ..+.|+|+|
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr--~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLR--EPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKTIITI 1415 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCEEEEE
Confidence 002355554 5899999999 999999999999 9999998888 7777775 357777665
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=8.3e-18 Score=166.04 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-C----cccChhhh--------------hhHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P----VAMDIREL--------------ISLEDVM 63 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y-~----~~~~i~e~--------------i~~~~~m 63 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+.. .+.| + ..+++.+. -.+.+++
T Consensus 536 e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~----~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L 611 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV----RMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 611 (718)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce----eEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHH
Confidence 3689999999999999999999999999999875421 1111 0 01111111 1256788
Q ss_pred HHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 64 EELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 64 ~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+.+++.+. .... ...+++++ +++||++++. +|++||+||||+ ||+.+...+. +.+.+. .+ ++++|
T Consensus 612 ~~~gl~~~~~~~~--~~~LSgGqkqRvaLAraL~~--~p~lLLLDEPT~~LD~~s~~~l~-~~L~~~--~g-tvIiv 680 (718)
T PLN03073 612 GSFGVTGNLALQP--MYTLSGGQKSRVAFAKITFK--KPHILLLDEPSNHLDLDAVEALI-QGLVLF--QG-GVLMV 680 (718)
T ss_pred HHCCCChHHhcCC--ccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCCCCCHHHHHHHH-HHHHHc--CC-EEEEE
Confidence 88888642 1111 24566654 4899999999 999999999999 9999987776 555443 24 66555
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.73 E-value=2.9e-17 Score=161.24 Aligned_cols=127 Identities=15% Similarity=0.137 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC---CCCCCCCCcccChhhhhh-----------------HHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP---AAENFDYPVAMDIRELIS-----------------LEDV 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~---~~~~~~y~~~~~i~e~i~-----------------~~~~ 62 (248)
-+++|+||||||||||+++|+|+++|++|++.+.+..- -.++ ++.+..+++|++. +.++
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~ 557 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQR-PYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQI 557 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCC-CCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHH
Confidence 36899999999999999999999999999988754210 0111 1211226666653 3456
Q ss_pred HHHhCCCCCCchhh-------hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795 63 MEELGLGPNGGLIY-------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 63 m~~~~L~~~~~~~~-------~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
++.+++.+...... ....+++++ +++|||++.. +|+++|+||||+ ||+.+...+. +.+++ .|.+
T Consensus 558 l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~--~p~illLDEpts~LD~~~~~~l~-~~l~~---~~~t 631 (659)
T TIGR00954 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH--KPQFAILDECTSAVSVDVEGYMY-RLCRE---FGIT 631 (659)
T ss_pred HHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHH---cCCE
Confidence 77777754321100 012455554 4899999999 999999999999 9999988777 55544 3777
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
++++
T Consensus 632 vI~i 635 (659)
T TIGR00954 632 LFSV 635 (659)
T ss_pred EEEE
Confidence 7665
No 348
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.72 E-value=3.5e-17 Score=172.03 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-ccCCCC-------CCCCC-Cc-----ccChhhhhhH---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-NLDPAA-------ENFDY-PV-----AMDIRELISL--------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~-~~d~~~-------~~~~y-~~-----~~~i~e~i~~--------- 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++ |.+... +.++| ++ +.+++|++..
T Consensus 412 e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~ 491 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLE 491 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccc
Confidence 4689999999999999999999999999999995 454421 23333 11 2366666643
Q ss_pred ----------------------------------------------------------HHHHHHhCCCC------CCch-
Q 025795 60 ----------------------------------------------------------EDVMEELGLGP------NGGL- 74 (248)
Q Consensus 60 ----------------------------------------------------------~~~m~~~~L~~------~~~~- 74 (248)
.++++..++.+ .+-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT 571 (1466)
T PTZ00265 492 ALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYET 571 (1466)
T ss_pred hhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCc
Confidence 22233333321 1100
Q ss_pred --hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 75 --IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 75 --~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
-.....+++++ +++|||+++. +|++|||||||+ ||+.+...+. +.++++.+ .|.++++|
T Consensus 572 ~vg~~g~~LSGGQkQRiaIARAll~--~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI 636 (1466)
T PTZ00265 572 LVGSNASKLSGGQKQRISIARAIIR--NPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII 636 (1466)
T ss_pred eeCCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE
Confidence 00012355543 4899999999 999999999999 9999999988 88888864 47777665
No 349
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6e-17 Score=151.28 Aligned_cols=137 Identities=19% Similarity=0.218 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------HH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------LE 60 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~~ 60 (248)
-++|+|++||||||+++.+.|.+.|++|+|..+|.+++. +.+.+ .| +-|+|+++. +.
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~ 445 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELW 445 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 479999999999999999999999999999999987643 12222 11 336777775 44
Q ss_pred HHHHHhCCCCCCc-----hhhh----HHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGPNGG-----LIYC----MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~~~~-----~~~~----~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++.+||.+.-. .... -+.++++ .|.+|||++.+ +.+++|+||||. ||+.+.++++ +++.+-.
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~--dapl~lLDEPTegLD~~TE~~vL-~ll~~~~- 521 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH--DAPLWLLDEPTEGLDPITERQVL-ALLFEHA- 521 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc--CCCeEEecCCcccCChhhHHHHH-HHHHHHh-
Confidence 5566666542100 0000 0223343 34899999999 999999999998 9999999999 6555543
Q ss_pred CCCeEEEEEecccccccChH
Q 025795 129 RNFNVCAVYLLDSQFITDVT 148 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~ 148 (248)
+|+|+++| +|.....+
T Consensus 522 ~~kTll~v----THrL~~le 537 (573)
T COG4987 522 EGKTLLMV----THRLRGLE 537 (573)
T ss_pred cCCeEEEE----ecccccHh
Confidence 48898877 46665444
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=99.71 E-value=4.3e-17 Score=172.07 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~ 60 (248)
-.+||+||+|||||||+++|.|+++|++|+|.++|.|... +.+.+ +| +-|+|+++. +.
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~ 1342 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLW 1342 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHH
Confidence 3589999999999999999999999999999999988743 22333 22 347888875 44
Q ss_pred HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++..++.+ .|-... .-..+++|+ +.+|||++.. +|+++||||||+ +|..+.+.+. +.+++..
T Consensus 1343 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr--~~~ILILDEATSaLD~~Te~~Iq-~~L~~~~- 1418 (1495)
T PLN03232 1343 EALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR--RSKILVLDEATASVDVRTDSLIQ-RTIREEF- 1418 (1495)
T ss_pred HHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence 5566555432 110000 002355544 4899999999 999999999999 9999988877 7777763
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
++.|+++|
T Consensus 1419 ~~~TvI~I 1426 (1495)
T PLN03232 1419 KSCTMLVI 1426 (1495)
T ss_pred CCCEEEEE
Confidence 46777666
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.71 E-value=4.6e-17 Score=170.69 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC----CCCCceEEEeccCCCC------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVNLDPAA------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l----~~~~G~i~i~~~d~~~------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+|+|+|.. +|.+|+|.++|.++.. ..+.| .+.+||+|++.
T Consensus 88 e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 167 (1394)
T TIGR00956 88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT 167 (1394)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCC
Confidence 468999999999999999999986 5689999999976521 11333 23567777653
Q ss_pred -----------------HHHHHHHhCCCCCCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795 59 -----------------LEDVMEELGLGPNGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (248)
Q Consensus 59 -----------------~~~~m~~~~L~~~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (248)
++++++.+||.+...... ....++++ +++.||++++. +|+++++||||+ ||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~--~p~vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 168 PQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG--GAKIQCWDNATRGLDSATA 245 (1394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh--CCCEEEEeCCCCCcCHHHH
Confidence 133677788875432211 01234554 34999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEE
Q 025795 116 VPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 116 ~~~~~~ll~~l~~-~~~~ii~v 136 (248)
..++ ++++++.+ .|.+++++
T Consensus 246 ~~i~-~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 246 LEFI-RALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHH-HHHHHHHHhcCCEEEEE
Confidence 9999 99999976 47777655
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=3.4e-17 Score=171.80 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCCCC----CCCCC-------CcccChhhhhhH---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDPAA----ENFDY-------PVAMDIRELISL--------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~~--------- 59 (248)
-.++|+||||||||||+++|+|.++|+ +|+|.++|.+... ..+.| .+.+||+|++..
T Consensus 192 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~ 271 (1470)
T PLN03140 192 RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGT 271 (1470)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999998 9999999976521 22333 335677776541
Q ss_pred -----------------------------------------HHHHHHhCCCCCCchh---hhHHhhhhhH--HHHHHHHH
Q 025795 60 -----------------------------------------EDVMEELGLGPNGGLI---YCMEHLEDNL--DDWLAEEL 93 (248)
Q Consensus 60 -----------------------------------------~~~m~~~~L~~~~~~~---~~~~~l~~~~--~~~La~~l 93 (248)
+++++.+||..-.... .....+++++ ++.+|+++
T Consensus 272 ~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 272 RYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred cccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 2356677776421100 0012355554 38999999
Q ss_pred ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
+. +|+++++||||+ ||..+..+++ +.++++.+ .|.+++++
T Consensus 352 ~~--~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~Tviis 393 (1470)
T PLN03140 352 VG--PTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEATVLMS 393 (1470)
T ss_pred cC--CCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCEEEEE
Confidence 99 999999999999 9999999999 99999875 47777655
No 353
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.1e-17 Score=133.10 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC----C-----------CCCCCC-Cccc------Chhhhh---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP----A-----------AENFDY-PVAM------DIRELI--- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~----~-----------~~~~~y-~~~~------~i~e~i--- 57 (248)
-|+++-||+||||||++|++.|.+.|++|+|.+.-.+- . .+.++| .+.+ .--|.+
T Consensus 38 ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 58999999999999999999999999999999854321 1 123344 1111 100111
Q ss_pred -------------hHHHHHHHhCCCCCCchhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 58 -------------SLEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 58 -------------~~~~~m~~~~L~~~~~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
.+.+.+.++++.+........ .+++ ++++.|||.+.. +-+++++||||+ ||..++..+. +
T Consensus 118 ll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPa-TFSGGEqQRVNIaRgfiv--d~pILLLDEPTasLDa~Nr~vVv-e 193 (235)
T COG4778 118 LLARGVPREVARAKAADLLTRLNLPERLWSLAPA-TFSGGEQQRVNIARGFIV--DYPILLLDEPTASLDATNRAVVV-E 193 (235)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCc-ccCCchheehhhhhhhhc--cCceEEecCCcccccccchHHHH-H
Confidence 156777888877654433332 2333 356999999999 999999999998 9999999999 9
Q ss_pred HHHHHHhCCCeEEEEE
Q 025795 122 FVDHLKSRNFNVCAVY 137 (248)
Q Consensus 122 ll~~l~~~~~~ii~v~ 137 (248)
++++-++.|..++-+|
T Consensus 194 li~e~Ka~GaAlvGIF 209 (235)
T COG4778 194 LIREAKARGAALVGIF 209 (235)
T ss_pred HHHHHHhcCceEEEee
Confidence 9999888899998885
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=152.77 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCC--CCCC-CCCcccChhhhh----------hHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPA--AENF-DYPVAMDIRELI----------SLEDVMEELGLG 69 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~--~~~~-~y~~~~~i~e~i----------~~~~~m~~~~L~ 69 (248)
-++|+||||+|||||+|+|+|...|.+|.|.+... ..+ .|+. .+.++.++-+.+ .+...+..+++.
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999987431 110 0100 111222333333 367788899998
Q ss_pred CCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccc
Q 025795 70 PNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (248)
+.... .....++++.+ +.||..+.. +|.+|||||||+ ||+.+...+- +.+.. ...++++|. ||-+++
T Consensus 430 ~~~~~-~~v~~LSGGEk~Rl~La~ll~~--~pNvLiLDEPTNhLDi~s~~aLe-~aL~~---f~Gtvl~VS-HDr~Fl 499 (530)
T COG0488 430 GEDQE-KPVGVLSGGEKARLLLAKLLLQ--PPNLLLLDEPTNHLDIESLEALE-EALLD---FEGTVLLVS-HDRYFL 499 (530)
T ss_pred hHHHh-CchhhcCHhHHHHHHHHHHhcc--CCCEEEEcCCCccCCHHHHHHHH-HHHHh---CCCeEEEEe-CCHHHH
Confidence 76542 33466777764 788888888 999999999999 9999986655 44444 344676663 454444
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.69 E-value=1.4e-16 Score=168.55 Aligned_cols=130 Identities=20% Similarity=0.145 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~ 60 (248)
-.+||+|++|||||||+++|.|+++|++|+|.++|.|... ..+.+ +| +-|||+++. +.
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence 3589999999999999999999999999999999998753 23333 22 337888875 44
Q ss_pred HHHHHhCCCC------CCch--h-hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGP------NGGL--I-YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~--~-~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++..++.+ .|-. + ..-..+++|+ +.+|||++.. +|+++||||||+ +|..+...+. +.+++..
T Consensus 1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr--~~~ILiLDEaTSalD~~Te~~Iq-~~l~~~~- 1468 (1522)
T TIGR00957 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR--KTKILVLDEATAAVDLETDNLIQ-STIRTQF- 1468 (1522)
T ss_pred HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc-
Confidence 5566555431 1100 0 0002345544 4899999999 999999999999 9999988777 7777763
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
++.|+++|
T Consensus 1469 ~~~TvI~I 1476 (1522)
T TIGR00957 1469 EDCTVLTI 1476 (1522)
T ss_pred CCCEEEEE
Confidence 46777665
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.1e-16 Score=169.59 Aligned_cols=130 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~ 60 (248)
-.+||+||+||||||++++|.|+++|++|+|.++|.|... +.+.+ +| +-|||+++. +.
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~ 1345 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLW 1345 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHH
Confidence 3589999999999999999999999999999999988753 23333 22 337888875 44
Q ss_pred HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++..++.+ .|-... .-..+++|+ +.+|||++.. +|++|||||||+ +|..+.+.+. +.+++..
T Consensus 1346 ~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr--~p~ILILDEATSaLD~~Te~~Iq-~~I~~~~- 1421 (1622)
T PLN03130 1346 ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR--RSKILVLDEATAAVDVRTDALIQ-KTIREEF- 1421 (1622)
T ss_pred HHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHC-
Confidence 5555554421 110000 002355544 4899999999 999999999999 9999998887 7788764
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
.+.|+++|
T Consensus 1422 ~~~TvI~I 1429 (1622)
T PLN03130 1422 KSCTMLII 1429 (1622)
T ss_pred CCCEEEEE
Confidence 46777665
No 357
>PTZ00243 ABC transporter; Provisional
Probab=99.69 E-value=1.6e-16 Score=168.01 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~ 60 (248)
-.+||+|++|||||||+++|.|+++|++|+|.++|.|... +.+.| +| +-|||+++. +.
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~ 1416 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVW 1416 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHH
Confidence 3589999999999999999999999999999999988753 23333 22 348888886 45
Q ss_pred HHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCC-CCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 61 DVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 61 ~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++..++.+ +|-... .-..+++++ +.+|||++.. + |++|||||||+ +|..+.+.+. +.+++..
T Consensus 1417 ~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~--~~~~ILlLDEATSaLD~~te~~Iq-~~L~~~~ 1493 (1560)
T PTZ00243 1417 AALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK--KGSGFILMDEATANIDPALDRQIQ-ATVMSAF 1493 (1560)
T ss_pred HHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc--CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHC
Confidence 6666666532 110000 002355554 3899999998 7 89999999999 9999998888 7777753
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
.+.|+|+|
T Consensus 1494 -~~~TvI~I 1501 (1560)
T PTZ00243 1494 -SAYTVITI 1501 (1560)
T ss_pred -CCCEEEEE
Confidence 46777665
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=2.7e-16 Score=126.03 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCC----CC-CCCC-------CCcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP----AA-ENFD-------YPVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~----~~-~~~~-------y~~~~~i~e~i~--------- 58 (248)
-++-++||+|||||||+..+.|++.+. .|++++++.+. ++ +.++ ..|.++|.+++-
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG 108 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKG 108 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccccc
Confidence 467899999999999999999999764 79999998764 22 1111 134445555442
Q ss_pred ------HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 59 ------LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 59 ------~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
+...+++.||...-..- .+.++++++ +++-|++.. +|+.+++|||++ ||..-+.+.-+....+.+..
T Consensus 109 ~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla--~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 109 NARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLA--QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred HHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHh--CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999887543222 356777765 889999999 999999999999 99999988886667777778
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
|..++.|
T Consensus 185 giPtv~V 191 (213)
T COG4136 185 GIPTVQV 191 (213)
T ss_pred CCCeEEE
Confidence 9888776
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.67 E-value=2.5e-16 Score=155.62 Aligned_cols=127 Identities=14% Similarity=0.192 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC---CCCCceEEEeccCCCCCCC---------------------CC-Cc--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHIVNLDPAAENF---------------------DY-PV-------- 49 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l---~~~~G~i~i~~~d~~~~~~---------------------~y-~~-------- 49 (248)
-.+||+||||||||||+++|+|.. .|.+|+|.+.++.+..... .+ .+
T Consensus 204 e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~ 283 (718)
T PLN03073 204 RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFET 283 (718)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 368999999999999999999864 5788999876654211100 00 00
Q ss_pred --------------ccChhhhh-----------------hHHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccC
Q 025795 50 --------------AMDIRELI-----------------SLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNY 96 (248)
Q Consensus 50 --------------~~~i~e~i-----------------~~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~ 96 (248)
.-.+.+.+ .+.++++.+|+.+.. .......++++++ ++||++++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~LA~aL~~- 361 (718)
T PLN03073 284 ETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIALARALFI- 361 (718)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHHHHHHhc-
Confidence 00000000 133455556664221 1112345666653 899999999
Q ss_pred CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 97 LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 97 ~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+|+++||||||+ ||+.+...+. ++++++ +.++++|
T Consensus 362 -~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~---~~tviiv 397 (718)
T PLN03073 362 -EPDLLLLDEPTNHLDLHAVLWLE-TYLLKW---PKTFIVV 397 (718)
T ss_pred -CCCEEEEECCCCCCCHHHHHHHH-HHHHHc---CCEEEEE
Confidence 999999999999 9999998877 776665 5676655
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=3.4e-16 Score=165.22 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~--- 69 (248)
-.++|+||||||||||+++|.|.++|.+|+|.++|.- ...+. ++..+.|++|++. ++++++..++.
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQT-SWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCC-CccCCccHHHHHHhccccchHHHHHHHHHHhHHHHH
Confidence 3689999999999999999999999999999987721 11122 2222347888775 23344333321
Q ss_pred ---CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 ---PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ---~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|.+... .....+++|+ +++|||++.. +|+++|||||++ ||+.+...+++.++..+. ++.+++++
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~--~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilv 604 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILV 604 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 222110 0012355554 4899999999 999999999999 999999999955666664 46777665
No 361
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.67 E-value=7e-16 Score=139.80 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCC-CC-------cccChhhh----------hhHHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-YP-------VAMDIREL----------ISLEDVME 64 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~-y~-------~~~~i~e~----------i~~~~~m~ 64 (248)
-++.++|.|||||||||+.+.|+++|++|+|.++|.+...++.. |. .+.-..+. -.++.+++
T Consensus 350 elvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~Lq 429 (546)
T COG4615 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQ 429 (546)
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHH
Confidence 46889999999999999999999999999999999876543321 10 00000000 01566777
Q ss_pred HhCCCCC---CchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025795 65 ELGLGPN---GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (248)
Q Consensus 65 ~~~L~~~---~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l 138 (248)
++.+... .+..++.-+++.+++ +++-.++.. +.++++|||--. -||.-++.+.+.++-.+++.|+||+.|.
T Consensus 430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE--eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs- 506 (546)
T COG4615 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE--ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS- 506 (546)
T ss_pred HHHHhhhhcccCCcccccccccchHHHHHHHHHHHh--hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-
Confidence 6665432 111223345667765 555566777 999999999999 9999999999888999988999998874
Q ss_pred ccccccc
Q 025795 139 LDSQFIT 145 (248)
Q Consensus 139 ~d~~~~~ 145 (248)
+|.|++.
T Consensus 507 HDd~YF~ 513 (546)
T COG4615 507 HDDHYFI 513 (546)
T ss_pred cCchhhh
Confidence 6777663
No 362
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.66 E-value=7.2e-16 Score=133.35 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=81.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----------------hCCCCCCc--------eEEEeccCCC----CC------CCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLY----------------RHCETVRR--------TMHIVNLDPA----AE------NFDYP 48 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~----------------g~l~~~~G--------~i~i~~~d~~----~~------~~~y~ 48 (248)
-+++|+||||||||||+++|+ +++.+.+| ++.+.|.+.. .+ .++|.
T Consensus 24 ~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 24 KHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 368999999999999999998 44555555 5555553211 01 12221
Q ss_pred -c-------ccChhhhhhHHHHHHHhCCCCCCc------------------hhhhHHhhhhhH--HHHHHHHHcc--CCC
Q 025795 49 -V-------AMDIRELISLEDVMEELGLGPNGG------------------LIYCMEHLEDNL--DDWLAEELDN--YLD 98 (248)
Q Consensus 49 -~-------~~~i~e~i~~~~~m~~~~L~~~~~------------------~~~~~~~l~~~~--~~~La~~l~~--~~~ 98 (248)
. ..+.. .+...++.+++.+... .......+++++ ++.||++++. ..+
T Consensus 104 ~~~~~l~~~~~t~~---ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~ 180 (243)
T cd03272 104 KDEYFLDKKNVTKN---DVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP 180 (243)
T ss_pred CCEEEECCeEcCHH---HHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence 1 11222 2445666666654210 001123455553 3889999962 116
Q ss_pred CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795 99 DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (248)
Q Consensus 99 p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (248)
|+++|+|||++ +|+.+...+. +.++++.+ +.+++++|
T Consensus 181 ~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~ii~~~ 218 (243)
T cd03272 181 APFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQFITTT 218 (243)
T ss_pred CCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEEe
Confidence 89999999999 9999999988 88888854 66666554
No 363
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.65 E-value=2.1e-16 Score=137.89 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEecc-CC---C-----C--------CC---------CCCCcccChhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNL-DP---A-----A--------EN---------FDYPVAMDIRE 55 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~-d~---~-----~--------~~---------~~y~~~~~i~e 55 (248)
-+.+|+|||||||||++++|++.+.+. .|.+.+.+. +. . . ++ ....+.++|.+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 357999999999999999999998765 345555443 10 0 0 00 00011111111
Q ss_pred ------------------hhhHHHHHHHhCCCCCCc------------------hhhhHHhhhhhH--HHHHHHHHcc--
Q 025795 56 ------------------LISLEDVMEELGLGPNGG------------------LIYCMEHLEDNL--DDWLAEELDN-- 95 (248)
Q Consensus 56 ------------------~i~~~~~m~~~~L~~~~~------------------~~~~~~~l~~~~--~~~La~~l~~-- 95 (248)
.-.+.++++.+++..+.. .......++.++ ++++|++++.
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 113677888999873311 001122344443 3788888862
Q ss_pred CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 96 YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 96 ~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..+|+++++||||+ +|+.....+. ++++++. .|.+++++
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~ii~i 225 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQFIVV 225 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCEEEEE
Confidence 11789999999999 9999999988 8888884 47766655
No 364
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=1.1e-15 Score=154.44 Aligned_cols=134 Identities=22% Similarity=0.212 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC---C---cccChhhhhh-------HHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY---P---VAMDIRELIS-------LEDV 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y---~---~~~~i~e~i~-------~~~~ 62 (248)
..++++||+||||||.+.+|-.++.|++|.|.++|.|... ++++. . .+-||||+|. .+|+
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eI 1096 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEI 1096 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHH
Confidence 4589999999999999999999999999999999988754 12222 1 2558888875 2333
Q ss_pred HHHhCC---------CCCCchhhh---HHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 63 MEELGL---------GPNGGLIYC---MEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 63 m~~~~L---------~~~~~~~~~---~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++...+ -|+|-.-.+ --.++++ +|.+||||+.. +|++|||||.|+ ||..+.+.+- +.+++..
T Consensus 1097 i~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR--nPkILLLDEATSALDseSErvVQ-eALd~a~ 1173 (1228)
T KOG0055|consen 1097 IEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR--NPKILLLDEATSALDSESERVVQ-EALDRAM 1173 (1228)
T ss_pred HHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc--CCCeeeeeccchhhhhhhHHHHH-HHHHHhh
Confidence 332221 122211110 0124444 45999999999 999999999999 9999987776 8888885
Q ss_pred hCCCeEEEEEec
Q 025795 128 SRNFNVCAVYLL 139 (248)
Q Consensus 128 ~~~~~ii~v~l~ 139 (248)
....++++.|-+
T Consensus 1174 ~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRL 1185 (1228)
T ss_pred cCCcEEEEecch
Confidence 433344444543
No 365
>PLN03130 ABC transporter C family member; Provisional
Probab=99.65 E-value=7.1e-16 Score=163.56 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~-G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~--- 69 (248)
-.++|+||+|||||||+++|.|.++|.+ |+|.+.+.---...-++-.+-||||+|. ++++++..++.
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di 723 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDL 723 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHH
Confidence 3589999999999999999999999999 8988754211111223444568998886 45555555542
Q ss_pred ---CCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 ---PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ---~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|.|....- -..+++|+ |++||||+.. +|+++|||||++ ||..+.+.++++.++.+. +++|+|+|
T Consensus 724 ~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~--~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlV 796 (1622)
T PLN03130 724 DLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS--NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLV 796 (1622)
T ss_pred HhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC--CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEE
Confidence 22211100 12355554 4899999999 999999999999 999999888867776653 45665554
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.65 E-value=9.3e-16 Score=129.45 Aligned_cols=126 Identities=12% Similarity=0.086 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC---------ceEEEeccCCCC----CCCCC-CcccC----hhhhhhHHHHHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVR---------RTMHIVNLDPAA----ENFDY-PVAMD----IRELISLEDVMEE 65 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~---------G~i~i~~~d~~~----~~~~y-~~~~~----i~e~i~~~~~m~~ 65 (248)
+++|+||||||||||+++|+|++++.. |++.+.|.++.. ..+.| +++.+ ....-.++++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 678999999999999999999986552 346555655321 12222 11111 1111235666666
Q ss_pred hCCCCCCchhhhHHhhhhhH--HHHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 66 LGLGPNGGLIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...... ....+++++ ++++|++++. ..+|+++++|||++ +|+.....+. ++++++.+ +.+++++
T Consensus 104 ---~~~~~~--~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiIii 172 (197)
T cd03278 104 ---PGKKVQ--RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ETQFIVI 172 (197)
T ss_pred ---CCcccc--chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CCEEEEE
Confidence 211111 234566654 3788888752 11679999999999 9999999999 88888854 5666555
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.64 E-value=2.2e-15 Score=129.69 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=54.2
Q ss_pred HHHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 60 EDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 60 ~~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
.+.++.+++.+. .... ...+++++ ++.||++++. +| +++|+||||+ +|+.++..+. ++++++++.|.++
T Consensus 118 ~~~l~~~~l~~~~~~~~--~~~LSgG~~qrv~laral~~--~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRS--APTLSGGEAQRIRLATQIGS--GLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCc--cCcCCHHHHHHHHHHHHHHh--CCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 456777888652 2222 13355543 4899999998 87 6999999999 9999999999 8888887678887
Q ss_pred EEE
Q 025795 134 CAV 136 (248)
Q Consensus 134 i~v 136 (248)
+++
T Consensus 193 i~i 195 (226)
T cd03270 193 LVV 195 (226)
T ss_pred EEE
Confidence 666
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.64 E-value=1.3e-15 Score=160.87 Aligned_cols=128 Identities=23% Similarity=0.257 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh---------HHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS---------LED 61 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~---------~~~ 61 (248)
.+||+|++|||||||+++|.|+++ .+|+|.++|.|... +.+.| +| .-|||+++. +.+
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~ 1325 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWK 1325 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHH
Confidence 589999999999999999999997 79999999988743 23333 11 348888885 456
Q ss_pred HHHHhCCCCC-----CchhhhH----HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 62 VMEELGLGPN-----GGLIYCM----EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 62 ~m~~~~L~~~-----~~~~~~~----~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
+++..++.+. ++.-... ..+++|+ +.+|||++.. +|++|||||||+ +|..+...+. +.+++.. .
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr--~~~ILlLDEaTS~lD~~Te~~I~-~~L~~~~-~ 1401 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS--KAKILLLDEPSAHLDPVTLQIIR-KTLKQSF-S 1401 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc-C
Confidence 6777666321 0000000 1244444 3899999999 999999999999 9999998888 7777753 4
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
+.|+++|
T Consensus 1402 ~~TvI~I 1408 (1490)
T TIGR01271 1402 NCTVILS 1408 (1490)
T ss_pred CCEEEEE
Confidence 6777766
No 369
>PLN03232 ABC transporter C family member; Provisional
Probab=99.64 E-value=1.3e-15 Score=160.82 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=89.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-CCCCCCCcccChhhhhh---------HHHHHHHhCCC---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-AENFDYPVAMDIRELIS---------LEDVMEELGLG--- 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~--- 69 (248)
-.++|+||+|||||||+++|.|.++|.+|.+.......+ ...-++-.+-||||+|. ++++++..++.
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di 723 (1495)
T PLN03232 644 SLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDL 723 (1495)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 358999999999999999999999999876543221111 01123333558888886 55566655542
Q ss_pred ---CCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 ---PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ---~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|.|..-.. -..+++|+ |++||||+.. +|+++|||||++ ||..+.+.+++++++.+. +++|+|+|
T Consensus 724 ~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~--~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~Ilv 796 (1495)
T PLN03232 724 DLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS--NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLV 796 (1495)
T ss_pred HhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEE
Confidence 22211100 02355554 4899999999 999999999999 999999888867676653 45665554
No 370
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.1e-16 Score=142.64 Aligned_cols=129 Identities=20% Similarity=0.240 Sum_probs=80.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe-------ccCCCCCCCCCCcccChhhhhh-------------HHH-HH
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV-------NLDPAAENFDYPVAMDIRELIS-------------LED-VM 63 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~-------~~d~~~~~~~y~~~~~i~e~i~-------------~~~-~m 63 (248)
+|++||||+|||||+|+|+. |.|... |-+.....-....+..+.+++. +.. ++
T Consensus 109 YGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L 182 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKIL 182 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 68999999999999999997 222221 1111000000011112222221 222 66
Q ss_pred HHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEecc
Q 025795 64 EELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 140 (248)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d 140 (248)
..+|+.+..... +...++++++ ++||||+.. +||+|+|||||+ ||..+... +-..|+.++.|+++|. +|
T Consensus 183 ~glGFt~emq~~-pt~slSGGWrMrlaLARAlf~--~pDlLLLDEPTNhLDv~av~W----Le~yL~t~~~T~liVS-HD 254 (582)
T KOG0062|consen 183 AGLGFTPEMQLQ-PTKSLSGGWRMRLALARALFA--KPDLLLLDEPTNHLDVVAVAW----LENYLQTWKITSLIVS-HD 254 (582)
T ss_pred HhCCCCHHHHhc-cccccCcchhhHHHHHHHHhc--CCCEEeecCCcccchhHHHHH----HHHHHhhCCceEEEEe-cc
Confidence 678877653222 2456778754 999999999 999999999999 99977633 3344555666777663 67
Q ss_pred cccccCh
Q 025795 141 SQFITDV 147 (248)
Q Consensus 141 ~~~~~d~ 147 (248)
+.|+...
T Consensus 255 r~FLn~V 261 (582)
T KOG0062|consen 255 RNFLNTV 261 (582)
T ss_pred HHHHHHH
Confidence 7776543
No 371
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.62 E-value=1.8e-15 Score=160.06 Aligned_cols=130 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEEL------ 66 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~------ 66 (248)
-.++|+||||||||||+++|.|+++|.+|+|.++|.- ...|. ++..+.|++|++. .+++++..
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~-~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l 743 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCC-ccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHH
Confidence 3689999999999999999999999999999987621 11121 2323457888875 23333332
Q ss_pred CCCCCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH--HHHhCCCeEEEE
Q 025795 67 GLGPNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD--HLKSRNFNVCAV 136 (248)
Q Consensus 67 ~L~~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~--~l~~~~~~ii~v 136 (248)
+.-|.|..- .....+++|+ +++|||++.. +|+++|+|||++ ||+.+.+.+++.+.. .+ .++.+++++
T Consensus 744 ~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~--~~~illLDEp~saLD~~~~~~i~~~l~~~~~~-~~~~tvIlv 818 (1522)
T TIGR00957 744 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV-LKNKTRILV 818 (1522)
T ss_pred HhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEcCCccccCHHHHHHHHHHHhhhhhh-hcCCEEEEE
Confidence 222332110 0012355554 4899999999 999999999999 999999999944432 22 246676655
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.62 E-value=2e-15 Score=159.76 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhhh---------HHHHHHHh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELIS---------LEDVMEEL------ 66 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~------ 66 (248)
-+++|+||||||||||+++|+|.++|++|+|.+.+. ....+. ++..+.+++|++. ++++++..
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~-~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l 765 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADL 765 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCC-CccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHH
Confidence 368999999999999999999999999999986421 000111 1222457887774 22233322
Q ss_pred -----CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 67 -----GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 67 -----~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|+....+.. ...+++++ +++|||++.. +|+++|||||++ ||+.+...+++.++.... .|.+++++
T Consensus 766 ~~l~~g~~t~i~~~--g~~LSGGQkqRvaLARAl~~--~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlv 838 (1560)
T PTZ00243 766 AQLGGGLETEIGEK--GVNLSGGQKARVSLARAVYA--NRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLA 838 (1560)
T ss_pred HHhhccchHHhcCC--CCCCCHHHHHHHHHHHHHhc--CCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 221110111 13455554 4899999999 999999999999 999998888855554432 46676655
No 373
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=9.3e-15 Score=119.87 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC----------------CCCCC---Cc----------ccCh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA----------------ENFDY---PV----------AMDI 53 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~----------------~~~~y---~~----------~~~i 53 (248)
-+.+|+|.+|||||||+++|++.+.|+.|+|.+...+-.. ...++ .| .-+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 4789999999999999999999999999999997643211 01111 00 1112
Q ss_pred hhhh-------------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795 54 RELI-------------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (248)
Q Consensus 54 ~e~i-------------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (248)
.|.. ...++++++.+++..-.-.+ ..+++++ +..||+-+.. .|.++++||||. ||...+..
T Consensus 113 GERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~P-rtFSGGMqQRLQiARnLVt--~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 113 GERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVT--RPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred chhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcc-cccchHHHHHHHHHHHhcc--CCceEEecCCCCCcchhhHHH
Confidence 2211 26789999988765422211 2355554 4889999999 999999999998 99999999
Q ss_pred HHHHHHHHHHh-CCCeEEEE
Q 025795 118 VLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 118 ~~~~ll~~l~~-~~~~ii~v 136 (248)
++ ++++.|.. .+..+++|
T Consensus 190 LL-DllrgLv~~l~la~viV 208 (258)
T COG4107 190 LL-DLLRGLVRELGLAVVIV 208 (258)
T ss_pred HH-HHHHHHHHhcCceEEEE
Confidence 99 99999875 47777666
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.61 E-value=7.7e-15 Score=124.46 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=74.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCCCCCceEEEec----cCCCCCCCCC------------CcccChhhhhh---HH
Q 025795 4 AQLVIGPAGSGKSTYCSSLY----RHCETVRRTMHIVN----LDPAAENFDY------------PVAMDIRELIS---LE 60 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~----g~l~~~~G~i~i~~----~d~~~~~~~y------------~~~~~i~e~i~---~~ 60 (248)
+++|+||||||||||+++|. |...+.+|.+.... .......+.+ ...+++.+++. -.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 68999999999999999995 88888777554111 1110001100 01123333331 01
Q ss_pred HHHHHhCCCCCCchhhhHHhhhhhHH--------HHHHHHHccCCCCCEEEEeCCCc-cCHHhHH-HHHHHHHHHHHhC-
Q 025795 61 DVMEELGLGPNGGLIYCMEHLEDNLD--------DWLAEELDNYLDDDYLVFDCPGQ-IELFTHV-PVLRNFVDHLKSR- 129 (248)
Q Consensus 61 ~~m~~~~L~~~~~~~~~~~~l~~~~~--------~~La~~l~~~~~p~~lilDEPt~-LD~~~~~-~~~~~ll~~l~~~- 129 (248)
++-+.+.-. ...++.+++ +++++++.. +|+++++|||++ ||+..+. .+. ++++++.++
T Consensus 104 ~~~~~~~~~--------~~~LS~G~~~~~~la~rlala~al~~--~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~ 172 (204)
T cd03240 104 ESNWPLLDM--------RGRCSGGEKVLASLIIRLALAETFGS--NCGILALDEPTTNLDEENIEESLA-EIIEERKSQK 172 (204)
T ss_pred HHHHHHhcC--------ccccCccHHHHHHHHHHHHHHHHhcc--CCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc
Confidence 111111000 122333322 467888888 999999999999 9999998 777 888888765
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
+.+++++
T Consensus 173 ~~~iiii 179 (204)
T cd03240 173 NFQLIVI 179 (204)
T ss_pred CCEEEEE
Confidence 6676655
No 375
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=2.7e-15 Score=138.02 Aligned_cols=132 Identities=15% Similarity=0.185 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC--CCCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD--PAAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d--~~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L 68 (248)
-+++++||||-|||||+++|+|.++|++|. ..++. ...|.+.-..+.||++.+. -.++++-+++
T Consensus 368 EvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l 445 (591)
T COG1245 368 EVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL 445 (591)
T ss_pred eEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch
Confidence 478999999999999999999999999997 11111 1122222233557777664 2345555555
Q ss_pred CCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccc
Q 025795 69 GPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQ 142 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~ 142 (248)
.+.-.+. ...++++ +++++|.+|.. ++|++++|||.+ ||...+..+. +.|++...+ +.+.++| .+|-.
T Consensus 446 ~~i~e~~--v~~LSGGELQRvaIaa~L~r--eADlYllDEPSA~LDvEqR~~va-kvIRR~~e~~~kta~vV-dHDi~ 517 (591)
T COG1245 446 EDLLERP--VDELSGGELQRVAIAAALSR--EADLYLLDEPSAYLDVEQRIIVA-KVIRRFIENNEKTALVV-DHDIY 517 (591)
T ss_pred HHHHhcc--cccCCchhHHHHHHHHHhcc--ccCEEEecCchhhccHHHHHHHH-HHHHHHHhhcCceEEEE-eccee
Confidence 5432222 2234443 45999999999 999999999999 9999988877 889998754 5555444 34443
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.59 E-value=4.3e-15 Score=126.60 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEec----cCCCC--CCCCC-------------CcccChhhhhhHHHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVN----LDPAA--ENFDY-------------PVAMDIRELISLEDVM 63 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~----~d~~~--~~~~y-------------~~~~~i~e~i~~~~~m 63 (248)
+++|+|||||||||++++|++. +.+..+...... ..... ..+.+ ...++..+..... .+
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~-~l 108 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV-LL 108 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh-hh
Confidence 7899999999999999999963 333333332210 00010 01111 0111221111100 11
Q ss_pred HHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccC--------CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795 64 EELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 64 ~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
+..++.+..... ...+++++ ++.+|++++.. .+|+++|+|||++ +|+.+...+. ++++++++++.+
T Consensus 109 ~~g~l~~~l~~~--~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~~~t 185 (213)
T cd03279 109 PQGEFDRFLARP--VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TALELIRTENRM 185 (213)
T ss_pred hhcchHHHhcCC--ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCE
Confidence 222222211111 12344443 38889988741 1578999999999 9999999988 888888766777
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
++++
T Consensus 186 ii~i 189 (213)
T cd03279 186 VGVI 189 (213)
T ss_pred EEEE
Confidence 7665
No 377
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=4.3e-15 Score=129.37 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=83.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-------C-----CC---------CC--------------CCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-------P-----AA---------EN--------------FDYP 48 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-------~-----~~---------~~--------------~~y~ 48 (248)
+++|+|||||||||++.+|++.+.+..|.+...+.+ . .. +. ..|.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 103 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR 103 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence 578999999999999999999887655555432210 0 00 00 0000
Q ss_pred cccChhhhhhHHHHHHHhCCCCCCc--------------------hhhhHHhhhhhH--HHHHHHHHcc--CCCCCEEEE
Q 025795 49 VAMDIRELISLEDVMEELGLGPNGG--------------------LIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVF 104 (248)
Q Consensus 49 ~~~~i~e~i~~~~~m~~~~L~~~~~--------------------~~~~~~~l~~~~--~~~La~~l~~--~~~p~~lil 104 (248)
.+-.....-.++++++.+|+.+... .......+++++ ++.|+++++. ..+|+++|+
T Consensus 104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll 183 (247)
T cd03275 104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL 183 (247)
T ss_pred ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 0000000112578888888864311 111123445543 3788988875 014899999
Q ss_pred eCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 105 DCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 105 DEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|||++ ||+..+..+. ++++++.++|.+++++
T Consensus 184 DEPt~~LD~~~~~~l~-~~i~~~~~~g~~vi~i 215 (247)
T cd03275 184 DEVDAALDNTNVGKVA-SYIREQAGPNFQFIVI 215 (247)
T ss_pred ecccccCCHHHHHHHH-HHHHHhccCCcEEEEE
Confidence 99999 9999999988 8888887667777766
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=1e-15 Score=130.61 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795 60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (248)
Q Consensus 60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (248)
.++.+.+++....... ...++.++ ++.+|++++. ..+|+++++|||++ +|+.++..+. ++++++.+ +.+++
T Consensus 109 ~~~~~~~~L~~~~~~~--~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~~-~~~~i 184 (212)
T cd03274 109 GEVEQIAQMPKKSWKN--ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERTK-NAQFI 184 (212)
T ss_pred CcEEEeeccccccccc--hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHcC-CCEEE
Confidence 3444555554322221 23344443 3788888853 11589999999999 9999999888 88888854 44444
Q ss_pred EE
Q 025795 135 AV 136 (248)
Q Consensus 135 ~v 136 (248)
++
T Consensus 185 iv 186 (212)
T cd03274 185 VI 186 (212)
T ss_pred EE
Confidence 44
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.58 E-value=5.1e-15 Score=138.43 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-C--CC----CCCCCc---------ccChhhhhhHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-A--AE----NFDYPV---------AMDIRELISLEDVMEELG 67 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-~--~~----~~~y~~---------~~~i~e~i~~~~~m~~~~ 67 (248)
-+++|||||+|||||+|+++|.+.|..|.|.-..-.. + ++ ..+|.. .-+.++.-.+..++.++|
T Consensus 418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfg 497 (614)
T KOG0927|consen 418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFG 497 (614)
T ss_pred ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhC
Confidence 3789999999999999999999999999886542111 1 11 111100 001233334778899999
Q ss_pred CCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 68 LGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 68 L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
|.... ....+..++.+++ +.+|+.+.. +|.+|+|||||| ||..+...+. +.+.+. ..++++|
T Consensus 498 Ltgd~-q~~p~~~LS~Gqr~rVlFa~l~~k--qP~lLlLDEPtnhLDi~tid~la-eaiNe~---~Ggvv~v 562 (614)
T KOG0927|consen 498 LTGDA-QVVPMSQLSDGQRRRVLFARLAVK--QPHLLLLDEPTNHLDIETIDALA-EAINEF---PGGVVLV 562 (614)
T ss_pred CCccc-cccchhhcccccchhHHHHHHHhc--CCcEEEecCCCcCCCchhHHHHH-HHHhcc---CCceeee
Confidence 98553 2334667777764 788888888 999999999999 9999986655 554443 3345555
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.57 E-value=2.6e-14 Score=125.52 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795 59 LEDVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (248)
Q Consensus 59 ~~~~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (248)
..++++.+||+.. .+.. ...++++ +++.||+++.. + |+++|+||||+ ||+.....+. ++++++.++|.
T Consensus 149 ~~~~L~~vgL~~l~l~~~--~~~LSgGe~QRl~LAraL~~--~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~ 223 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSK--RSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGN 223 (261)
T ss_pred HHHHHHHcCCchhhhcCc--cccCCHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 3456778888762 2222 2345554 44899999988 6 79999999999 9999999999 88999887788
Q ss_pred eEEEE
Q 025795 132 NVCAV 136 (248)
Q Consensus 132 ~ii~v 136 (248)
+++++
T Consensus 224 tvIii 228 (261)
T cd03271 224 TVVVI 228 (261)
T ss_pred EEEEE
Confidence 88766
No 381
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.56 E-value=4.5e-14 Score=128.49 Aligned_cols=156 Identities=18% Similarity=0.272 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----CCceEEEeccCCCC-----------CCC---------CCCcccChhhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----VRRTMHIVNLDPAA-----------ENF---------DYPVAMDIRELI 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----~~G~i~i~~~d~~~-----------~~~---------~y~~~~~i~e~i 57 (248)
-.++++|.+|||||-..+.+.|+++. -+|+|.+.|.|.-. ..+ ...|-.+|..++
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi 116 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL 116 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHH
Confidence 36899999999999999999999865 36899999987622 111 113344555554
Q ss_pred h-----------------HHHHHHHhCCCCCCchh--hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795 58 S-----------------LEDVMEELGLGPNGGLI--YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (248)
Q Consensus 58 ~-----------------~~~~m~~~~L~~~~~~~--~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (248)
. +.++++.+|+..-..+. |+ ..+++++ ++.||.|++. +|++||.||||. ||...+
T Consensus 117 ~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP-HeLSGGqRQRVMIAMALan--~P~lLIADEPTTALDVtvQ 193 (534)
T COG4172 117 AEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALAN--EPDLLIADEPTTALDVTVQ 193 (534)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC-cccCcchhhHHHHHHHHcC--CCCeEeecCCcchhhhhhH
Confidence 3 56788888886543332 33 3455654 4899999999 999999999998 999999
Q ss_pred HHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccch
Q 025795 116 VPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 181 (248)
Q Consensus 116 ~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~~ 181 (248)
.+++ +++++|++ .|+.++++ +|.+.=..+|.+ .|.|+.+.+.++..
T Consensus 194 aQIL-~Ll~~Lq~~~gMa~lfI----THDL~iVr~~AD---------------rV~VM~~G~ivE~~ 240 (534)
T COG4172 194 AQIL-DLLKELQAELGMAILFI----THDLGIVRKFAD---------------RVYVMQHGEIVETG 240 (534)
T ss_pred HHHH-HHHHHHHHHhCcEEEEE----eccHHHHHHhhh---------------hEEEEeccEEeecC
Confidence 9999 99999985 58888776 355443333333 34677777766643
No 382
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=3.4e-15 Score=151.21 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCCCC----CCCCC-------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~----------- 58 (248)
..++++|++|||||||+++|+|-.. ..+|+|.++|..... +..+| .+.+||||.+.
T Consensus 818 ~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v 897 (1391)
T KOG0065|consen 818 VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEV 897 (1391)
T ss_pred ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcC
Confidence 4589999999999999999999743 346899999976542 23344 24678888775
Q ss_pred --------HHHHHHHhCCCCCCchhhhH--HhhhhhHH--HHHHHHHccCCCC-CEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 --------LEDVMEELGLGPNGGLIYCM--EHLEDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~--~~l~~~~~--~~La~~l~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
++++|+.++|++....+... .-++..+| +.|+-.|+. +| .+|++||||+ ||..+.-.++ ++++
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA--~P~~ilFLDEPTSGLDsqaA~~i~-~~lr 974 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA--NPSSILFLDEPTSGLDSQAAAIVM-RFLR 974 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec--CCceeEEecCCCCCccHHHHHHHH-HHHH
Confidence 89999999998654333211 00122222 667777778 99 8999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE-Eeccc
Q 025795 125 HLKSRNFNVCAV-YLLDS 141 (248)
Q Consensus 125 ~l~~~~~~ii~v-~l~d~ 141 (248)
++...|.+|+++ |--++
T Consensus 975 kla~tGqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 975 KLADTGQTILCTIHQPSI 992 (1391)
T ss_pred HHHhcCCeEEEEecCCcH
Confidence 999889987764 53333
No 383
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.54 E-value=1.9e-14 Score=118.10 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-------CcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-------PVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-------~~~~~i~e~i~---------- 58 (248)
.+.-+|||||+|||||+..++|+++ -+|+|.+.|.+... ++-.| +..+.|..+++
T Consensus 26 e~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~ 104 (248)
T COG4138 26 EILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTE 104 (248)
T ss_pred eEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHH
Confidence 3556899999999999999999974 58999999987632 00011 11233444443
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCC---C--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYL---D--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~---~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
+.++...+++++...+. .+.++++ +++.+|....+.. + .+++++|||-+ ||......+- +++.++.+.
T Consensus 105 ~i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd-rll~~~c~~ 181 (248)
T COG4138 105 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD-RLLSALCQQ 181 (248)
T ss_pred HHHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH-HHHHHHHhC
Confidence 67778888888775554 3455554 3466665554431 2 36999999999 9998876666 999999989
Q ss_pred CCeEEEEEeccccccc
Q 025795 130 NFNVCAVYLLDSQFIT 145 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~ 145 (248)
|.+||+. +|.+.
T Consensus 182 G~~vims----~HDLN 193 (248)
T COG4138 182 GLAIVMS----SHDLN 193 (248)
T ss_pred CcEEEEe----ccchh
Confidence 9998654 45554
No 384
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.54 E-value=4.9e-14 Score=130.78 Aligned_cols=135 Identities=17% Similarity=0.194 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~ 59 (248)
..++++||+|+||||.+|++..++...+|.|.++|+|..+ ..++. |+ +-||-.+|. +
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asneev 644 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEV 644 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHH
Confidence 4689999999999999999999999999999999999743 22222 11 112222222 1
Q ss_pred HHHHHH-------hCC--------CCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 60 EDVMEE-------LGL--------GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 60 ~~~m~~-------~~L--------~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
.++.+. +++ |+.| ++ -...+++++++||++.. .|.++++||.|+ ||..+.+.+. ..+
T Consensus 645 yaAAkAA~IHdrIl~fPegY~t~VGERG-Lk---LSGGEKQRVAiARtiLK--~P~iIlLDEATSALDT~tER~IQ-aaL 717 (790)
T KOG0056|consen 645 YAAAKAAQIHDRILQFPEGYNTRVGERG-LK---LSGGEKQRVAIARTILK--APSIILLDEATSALDTNTERAIQ-AAL 717 (790)
T ss_pred HHHHHHhhHHHHHhcCchhhhhhhhhcc-cc---cCCcchhhHHHHHHHhc--CCcEEEEcchhhhcCCccHHHHH-HHH
Confidence 111111 111 2222 11 01223467999999999 999999999999 9999999988 888
Q ss_pred HHHHhCCCeEEEEEecccccc
Q 025795 124 DHLKSRNFNVCAVYLLDSQFI 144 (248)
Q Consensus 124 ~~l~~~~~~ii~v~l~d~~~~ 144 (248)
.++.+...++++.|-+++..-
T Consensus 718 ~rlca~RTtIVvAHRLSTivn 738 (790)
T KOG0056|consen 718 ARLCANRTTIVVAHRLSTIVN 738 (790)
T ss_pred HHHhcCCceEEEeeeehheec
Confidence 888776677777776554433
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.53 E-value=4.6e-14 Score=129.98 Aligned_cols=126 Identities=22% Similarity=0.244 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------------------CCCCCCc---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------------------ENFDYPV--- 49 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------------------~~~~y~~--- 49 (248)
.++||+||||-||||-+|+|+|.+.|.=|+.. -+|.. |.+.+-|
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 58999999999999999999999999877531 11211 1111111
Q ss_pred ccChhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 50 AMDIRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 50 ~~~i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
.=++++.+. .+++++.++|.....+- .+.++++ ++++||.++.. ++++++||||++ ||...+-.+.
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~r--dADvY~FDEpsSyLDi~qRl~~a 253 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLR--DADVYFFDEPSSYLDIRQRLNAA 253 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhc--cCCEEEEcCCcccccHHHHHHHH
Confidence 114555554 78899999998764443 3445554 46899999999 999999999999 9999999999
Q ss_pred HHHHHHHHhCCCeEEEE
Q 025795 120 RNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 120 ~~ll~~l~~~~~~ii~v 136 (248)
+++++|.+.++.+++|
T Consensus 254 -r~Irel~~~~k~ViVV 269 (591)
T COG1245 254 -RVIRELAEDGKYVIVV 269 (591)
T ss_pred -HHHHHHhccCCeEEEE
Confidence 9999998777888777
No 386
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.51 E-value=4.5e-14 Score=119.36 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=64.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
+++|+||||||||||+|.++|.... ..|. .+......-+.....+.++++|.+.. ++... ....
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~l~~~G~-~v~a~~~~~q~~~l~~~~~~~d~l~~-------~~s~~------~~e~- 91 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVILAQAGA-PVCASSFELPPVKIFTSIRVSDDLRD-------GISYF------YAEL- 91 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCC-EEecCccCcccceEEEeccchhcccc-------ccChH------HHHH-
Confidence 6789999999999999999986531 1222 11111100010001223344443321 11111 0111
Q ss_pred hhHHHHHHHHHccCC--CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DNLDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.+. ...+.... +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 92 ~~~----~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiiv 144 (199)
T cd03283 92 RRL----KEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIIS 144 (199)
T ss_pred HHH----HHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 122 22222222 899999999999 999998877646788887667776555
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.48 E-value=8.6e-14 Score=117.46 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH--------hCCCCCCceEEEeccCCCCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCch
Q 025795 4 AQLVIGPAGSGKSTYCSSLY--------RHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGL 74 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~--------g~l~~~~G~i~i~~~d~~~~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~ 74 (248)
+++|+||||||||||++.+. |..-|....+ .++| .+.++ .++.....
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------~~~~~~~~~~------------~lg~~~~l-- 85 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------SLPVFENIFA------------DIGDEQSI-- 85 (200)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------cCcCccEEEE------------ecCchhhh--
Confidence 58999999999999999998 5443322111 1232 11111 11111000
Q ss_pred hhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 75 IYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 75 ~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...+..++.+++ ..++++ +. +|+++++|||+. +|+..+..+...+++.+.+.+.+++++
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~-~~--~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~ 147 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQH-AD--PDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIAT 147 (200)
T ss_pred hcCcchHHHHHHHHHHHHHh-CC--CCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000123444442 344444 34 899999999999 999999988756788887667776555
No 388
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.9e-13 Score=124.84 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~ 59 (248)
..++++||+|+||||+.+.+..++.+.+|.|.++|+|... ..++. |+ +-++..++. +
T Consensus 290 ~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev 369 (497)
T COG5265 290 KTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369 (497)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence 3589999999999999999999999999999999988632 11111 11 112222222 1
Q ss_pred HHHHHH------hCCCCCCc-----hhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEE------LGLGPNGG-----LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~------~~L~~~~~-----~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
..+.+. ..-.|.|- .+.-.-+..+++++++||.+.. +|++++|||.|+ ||..+.+.+. .-+++..
T Consensus 370 ~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk--~p~il~~deatsaldt~te~~iq-~~l~~~~ 446 (497)
T COG5265 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK--NPPILILDEATSALDTHTEQAIQ-AALREVS 446 (497)
T ss_pred HHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc--CCCEEEEehhhhHhhhhHHHHHH-HHHHHHh
Confidence 111111 12223221 1111112334577999999999 999999999999 9999998888 7788876
Q ss_pred hCCCeEEEEEecc
Q 025795 128 SRNFNVCAVYLLD 140 (248)
Q Consensus 128 ~~~~~ii~v~l~d 140 (248)
+...++++.|-++
T Consensus 447 ~~rttlviahrls 459 (497)
T COG5265 447 AGRTTLVIAHRLS 459 (497)
T ss_pred CCCeEEEEeehhh
Confidence 5445555556443
No 389
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=3.9e-13 Score=138.56 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCCCC---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGLGP--- 70 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~~--- 70 (248)
..++|+||-|||||+|+.+|.|.++..+|++.+.|.-.-....||-++-||||+|- ++++++...|.+
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle 627 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLE 627 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHh
Confidence 45899999999999999999999999999999998622122334555779999985 677777666543
Q ss_pred ---CCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 71 ---NGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 71 ---~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.|+.-.- --.+++|+ |+.||||+.+ ++|+++||.|.+ +|....+.++++.++.+-+ ++|+|.|
T Consensus 628 ~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~--~adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILV 699 (1381)
T KOG0054|consen 628 ILPFGDLTEIGERGINLSGGQKQRISLARAVYQ--DADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILV 699 (1381)
T ss_pred hcCCCCcceecCCccCCcHhHHHHHHHHHHHhc--cCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEE
Confidence 2221100 01245554 4899999999 999999999999 9999999999888866644 4555544
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.45 E-value=1.2e-12 Score=110.50 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-----ce----EEEeccCCCC-----CCCCCCc-ccChhhhhhHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-----RT----MHIVNLDPAA-----ENFDYPV-AMDIRELISLEDVMEELGL 68 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~-----G~----i~i~~~d~~~-----~~~~y~~-~~~i~e~i~~~~~m~~~~L 68 (248)
+.+|+|||||||||++.+|...+.... |. +.-.|.+.+. ++-...+ .....+.-.++++++.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 99 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS--- 99 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc---
Confidence 468999999999999999985432221 10 0000000000 0000000 0111112235666665
Q ss_pred CCCCchhhhHHhhhhhHH--HHHHHHH----ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 69 GPNGGLIYCMEHLEDNLD--DWLAEEL----DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~--~~La~~l----~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
...... ....++.+++ +.+++++ +. +|+++|+|||++ +|+..+..+. ++++++.+
T Consensus 100 ~~~~~~--~~~~lS~G~k~r~~ia~al~~~~~~--~p~illlDEP~~glD~~~~~~~~-~~l~~~~~ 161 (198)
T cd03276 100 NKAAVR--DVKTLSGGERSFSTVCLLLSLWEVM--ESPFRCLDEFDVFMDMVNRKIST-DLLVKEAK 161 (198)
T ss_pred ccccCC--cccccChhHHHHHHHHHHHHHhccc--CCCEEEecCcccccCHHHHHHHH-HHHHHHHh
Confidence 221111 1234555543 7888888 46 999999999999 9999999998 77777654
No 391
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.45 E-value=7.4e-13 Score=126.90 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=90.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C-CCCCCCCCcccChhhhhh------------HHHHHHHhCCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P-AAENFDYPVAMDIRELIS------------LEDVMEELGLGP 70 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~-~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L~~ 70 (248)
+.|.||||||||||+|+|+|+-+--+|+|..-.-. . --..-||.|.-+.||.+. +.+++.++||++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~ 501 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGD 501 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH
Confidence 57999999999999999999998888988765110 0 002235544446666653 778888999886
Q ss_pred CCchhh------hHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 71 NGGLIY------CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 71 ~~~~~~------~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...+.. ..-...+++++++||.+.+ +|+++++||-|+ ||..+...+. +++++-. .+.++|.|
T Consensus 502 L~~rl~~~~~W~~vLS~GEqQRlafARilL~--kP~~v~LDEATsALDe~~e~~l~-q~l~~~l-p~~tvISV 570 (604)
T COG4178 502 LAERLDEEDRWDRVLSGGEQQRLAFARLLLH--KPKWVFLDEATSALDEETEDRLY-QLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHhccCcHhhhcChhHHHHHHHHHHHHc--CCCEEEEecchhccChHHHHHHH-HHHHhhC-CCCEEEEe
Confidence 432211 1111223466999999999 999999999999 9999998888 5554421 46777766
No 392
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=1.7e-13 Score=141.12 Aligned_cols=129 Identities=18% Similarity=0.201 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCC---CCCc---ccChhhhhh---------HHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF---DYPV---AMDIRELIS---------LED 61 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~---~y~~---~~~i~e~i~---------~~~ 61 (248)
-+||+|..|||||||.++|-.+..|.+|+|.++|.|... ..+ |-.| .=|+|.++. +-+
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ 1247 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWE 1247 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHH
Confidence 489999999999999999999999999999999998754 111 2111 125555553 334
Q ss_pred HHHHhCCCC------CC--chh-hhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 62 VMEELGLGP------NG--GLI-YCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 62 ~m~~~~L~~------~~--~~~-~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
++++.+|.+ .+ ..+ ..-+.++-|+| +.||||+.. +.+++++||.|+ +|+.+-.-+. +.|++-= +
T Consensus 1248 ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr--~skILvLDEATAsVD~~TD~lIQ-~tIR~~F-~ 1323 (1381)
T KOG0054|consen 1248 ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR--KSKILVLDEATASVDPETDALIQ-KTIREEF-K 1323 (1381)
T ss_pred HHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc--cCCEEEEecccccCChHHHHHHH-HHHHHHh-c
Confidence 444443321 00 000 00022333343 899999999 999999999998 9999976555 6666532 4
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
+.|++.+
T Consensus 1324 dcTVltI 1330 (1381)
T KOG0054|consen 1324 DCTVLTI 1330 (1381)
T ss_pred CCeEEEE
Confidence 6777765
No 393
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.2e-12 Score=123.24 Aligned_cols=142 Identities=16% Similarity=0.217 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC----------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY----------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y----------~~~~~i~e~i~------ 58 (248)
-++||-|--|||+|=++++|.|.-++.+|+|.++|..... ..+.| .++.+|+++++
T Consensus 286 EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 286 EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 4789999999999999999999999999999999975432 12333 23556777765
Q ss_pred ---------------HHHHHHHhCCCCCCchhhhHHhhhh-h-HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHH
Q 025795 59 ---------------LEDVMEELGLGPNGGLIYCMEHLED-N-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLR 120 (248)
Q Consensus 59 ---------------~~~~m~~~~L~~~~~~~~~~~~l~~-~-~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~ 120 (248)
++++.+.+++........ ...+++ | +++.||+.|.. +|++||+||||. +|.-++.++.
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-v~~LSGGNQQKVvlarwL~~--~p~vLilDEPTRGIDVGAK~eIy- 441 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-IGTLSGGNQQKVVLARWLAT--DPKVLILDEPTRGIDVGAKAEIY- 441 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccch-hhcCCchhhhhHHHHHHHhc--CCCEEEECCCCcCcccchHHHHH-
Confidence 344455555533222111 233444 3 45899999999 999999999999 9999999999
Q ss_pred HHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 121 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 121 ~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++++++.++|.+++++ |..+.+....|+
T Consensus 442 ~li~~lA~~G~ail~i----SSElpEll~~~D 469 (500)
T COG1129 442 RLIRELAAEGKAILMI----SSELPELLGLSD 469 (500)
T ss_pred HHHHHHHHCCCEEEEE----eCChHHHHhhCC
Confidence 9999999999999877 344444443333
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.7e-13 Score=120.99 Aligned_cols=126 Identities=20% Similarity=0.255 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec------cCC-CCCCCCCCcccChhhhh---------hHHHHHHH
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN------LDP-AAENFDYPVAMDIRELI---------SLEDVMEE 65 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~------~d~-~~~~~~y~~~~~i~e~i---------~~~~~m~~ 65 (248)
-.-++|+||||.|||||++.|.|-+.|..|+..-+- .|- +++.+.- .-+.-+++ .++..+..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~--Eetp~EyLqr~FNlpyq~ARK~LG~ 690 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNG--EETPVEYLQRKFNLPYQEARKQLGT 690 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcc--ccCHHHHHHHhcCCChHHHHHHhhh
Confidence 345899999999999999999999999998754321 110 0011100 00111211 25556667
Q ss_pred hCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+||......+. +..+++++. +++|..-.. .|++|||||||+ ||+.+...+. +.|++.. | .+|+|
T Consensus 691 fGL~sHAHTik-ikdLSGGQKaRValaeLal~--~PDvlILDEPTNNLDIESIDALa-EAIney~--G-gVi~V 757 (807)
T KOG0066|consen 691 FGLASHAHTIK-IKDLSGGQKARVALAELALG--GPDVLILDEPTNNLDIESIDALA-EAINEYN--G-GVIMV 757 (807)
T ss_pred hhhhhccceEe-eeecCCcchHHHHHHHHhcC--CCCEEEecCCCCCcchhhHHHHH-HHHHhcc--C-cEEEE
Confidence 77765543332 334666653 777765556 999999999999 9999987777 6666652 3 45555
No 395
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.38 E-value=3.8e-13 Score=112.31 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=67.8
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~ 83 (248)
++|.||||||||||+|.+. ..+.+..|..... ..-.+++ +++++..++........ ...++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a----~~~~~~~-----------~d~il~~~~~~d~~~~~--~s~fs~ 64 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA----ESAELPV-----------FDRIFTRIGASDSLAQG--LSTFMV 64 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee----hheEecc-----------cceEEEEeCCCCchhcc--ccHHHH
Confidence 6799999999999999998 3333344432111 0111222 11122223332221111 223445
Q ss_pred hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 84 ~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
++ ..+++++....+|+++|+|||+. +|+.....+...+++.+.+. +.+++++
T Consensus 65 ~~-~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 65 EM-KETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred HH-HHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 55 44555555444899999999999 99998888776788888663 6665443
No 396
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=119.93 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=68.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc----CCCC----C-----------CCCC-----C---cc------c
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL----DPAA----E-----------NFDY-----P---VA------M 51 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~----d~~~----~-----------~~~y-----~---~~------~ 51 (248)
+||+|||||||||++++++|-..|..-++-+--+ .|.. + .+.| . .+ .
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~ 183 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELD 183 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHH
Confidence 6999999999999999999988876544333111 1100 0 0000 0 00 0
Q ss_pred Chhhh--------hh--HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 52 DIREL--------IS--LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 52 ~i~e~--------i~--~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
++.+. +. +..+|..+|..+.-..... ..+++|+ |.+||++|.. +|++|++||||+ ||+.+..-+
T Consensus 184 ~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-~~~SgGwrmR~aLAr~Lf~--kP~LLLLDEPtnhLDleA~~wL 260 (614)
T KOG0927|consen 184 ELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-KDLSGGWRMRAALARALFQ--KPDLLLLDEPTNHLDLEAIVWL 260 (614)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-hccCchHHHHHHHHHHHhc--CCCEEEecCCccCCCHHHHHHH
Confidence 00000 00 3334444444433322222 2355554 4999999999 999999999999 999987544
Q ss_pred HHHHHHH
Q 025795 119 LRNFVDH 125 (248)
Q Consensus 119 ~~~ll~~ 125 (248)
- +.+.+
T Consensus 261 e-e~L~k 266 (614)
T KOG0927|consen 261 E-EYLAK 266 (614)
T ss_pred H-HHHHh
Confidence 3 44443
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.37 E-value=6.9e-13 Score=112.06 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-CCCCceEEEeccCCC-CCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPA-AENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l-~~~~G~i~i~~~d~~-~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
+++|+||||||||||++++++.. .+..|... |+ ...+++.. .++..++....... .+..+
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-----~~~~~~i~~~d-----------qi~~~~~~~d~i~~--~~s~~ 92 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-----PAESASIPLVD-----------RIFTRIGAEDSISD--GRSTF 92 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-----cccccccCCcC-----------EEEEEecCcccccC--CceeH
Confidence 68999999999999999999532 22333211 11 11222211 00011111100000 01122
Q ss_pred hhhH-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 82 EDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 82 ~~~~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..++ +...+.+... +|+++|+|||++ +|+.....+...+++.+.+.+.+++++
T Consensus 93 ~~e~~~l~~i~~~~~--~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~ 147 (202)
T cd03243 93 MAELLELKEILSLAT--PRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA 147 (202)
T ss_pred HHHHHHHHHHHHhcc--CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 2233 1222233345 899999999999 999988887756777776667776655
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.30 E-value=1.6e-11 Score=103.24 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=88.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-----------CcccChhhhhhHHHHHHHh
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-----------PVAMDIRELISLEDVMEEL 66 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-----------~~~~~i~e~i~~~~~m~~~ 66 (248)
..++|.||||||||+|+++|-.-...|.|.+.|.++-. ..+.| .-++.+.-.+++++.+.-.
T Consensus 43 cLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV 122 (291)
T KOG2355|consen 43 CLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV 122 (291)
T ss_pred EEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHHHHhhc
Confidence 46899999999999999999777777999999988733 11122 0011111223333333322
Q ss_pred CCC-CC----------CchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCC
Q 025795 67 GLG-PN----------GGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNF 131 (248)
Q Consensus 67 ~L~-~~----------~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~ 131 (248)
+-. |. -.....|...+.+++ +.|+..|.. .-+++++||-|- ||..++..++ +++++-. ++|.
T Consensus 123 ~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~--PfkVLLLDEVTVDLDVlARadLL-eFlkeEce~Rga 199 (291)
T KOG2355|consen 123 GGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK--PFKVLLLDEVTVDLDVLARADLL-EFLKEECEQRGA 199 (291)
T ss_pred cCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc--ceeEEEeeeeEeehHHHHHHHHH-HHHHHHHhhcCc
Confidence 211 10 011233556666654 788888877 679999999998 9999999999 8777765 4688
Q ss_pred eEEE-EEeccc
Q 025795 132 NVCA-VYLLDS 141 (248)
Q Consensus 132 ~ii~-v~l~d~ 141 (248)
+|+. +|++|.
T Consensus 200 tIVYATHIFDG 210 (291)
T KOG2355|consen 200 TIVYATHIFDG 210 (291)
T ss_pred EEEEEeeeccc
Confidence 8764 466664
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.3e-11 Score=115.27 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=84.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCc-------ccCh--hhhh----------hHHHHHHH
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-------AMDI--RELI----------SLEDVMEE 65 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~-------~~~i--~e~i----------~~~~~m~~ 65 (248)
++++|+||.||||+++++.|-++|..|.+.+... ..+.|.. +..+ -+.. .++.-+..
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r----~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR----LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeeccc----ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 5789999999999999999999999998877642 2222311 0111 0111 15667778
Q ss_pred hCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 66 LGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 66 ~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+|+....+... +..+++++. +++|..... +|.+|+|||||+ ||..+...+. +.++..+..||+|
T Consensus 469 ~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~--~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GGVv~V 535 (582)
T KOG0062|consen 469 FGLSGELALQS-IASLSGGQKSRVAFAACTWN--NPHLLVLDEPTNHLDRDSLGALA----KALKNFNGGVVLV 535 (582)
T ss_pred cCCCchhhhcc-ccccCCcchhHHHHHHHhcC--CCcEEEecCCCccccHHHHHHHH----HHHHhcCCcEEEE
Confidence 88877655544 566888765 788887778 999999999999 9998875555 4455444456666
No 400
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.29 E-value=1.5e-11 Score=100.54 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=65.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
+++|+|||||||||+++.+....-...|..... .+. ..++ .+...+. . +....+ ++
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---~~g~~~~~~~~~----~--i~~~~~-------------lS 79 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---KAGCIVAAVSAE----L--IFTRLQ-------------LS 79 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---cCCCcceeeEEE----E--ehheee-------------cc
Confidence 678999999999999999876655444433331 110 0111 1111100 0 111111 22
Q ss_pred hh--HHHHHHHHHccCC--CCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DN--LDDWLAEELDNYL--DDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~--~~~~La~~l~~~~--~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.+ .+..+++++.... +|+++|+|||+. +|+.....+. +.+.++.+++.+++++
T Consensus 80 ~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~-~~l~~~~~~~~~vii~ 137 (162)
T cd03227 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA-EAILEHLVKGAQVIVI 137 (162)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 22 2267788886522 689999999999 9999999988 6666654446666544
No 401
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=1.2e-11 Score=105.05 Aligned_cols=114 Identities=15% Similarity=0.181 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
+++|+|||||||||+++++++..-- +++ |.- |+. .+.+++. +.++..++...+.... ...++
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~~l--a~~---G~~vpa~-----~~~l~~~-----d~I~~~~~~~d~~~~~--~S~fs 93 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLAIM--AQI---GCFVPAE-----YATLPIF-----NRLLSRLSNDDSMERN--LSTFA 93 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--HHc---CCCcchh-----hcCccCh-----hheeEecCCccccchh--hhHHH
Confidence 5899999999999999999876411 000 111 111 1122222 2344455554432222 23444
Q ss_pred hhHH-HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~~~-~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.+++ ...+..++. +|+++|+|||+. +|+.....+...+++.+.+.+.+++++
T Consensus 94 ~e~~~~~~il~~~~--~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~ 147 (204)
T cd03282 94 SEMSETAYILDYAD--GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFA 147 (204)
T ss_pred HHHHHHHHHHHhcC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5542 222223345 899999999998 999877777657888887777776554
No 402
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.25 E-value=1.8e-11 Score=103.42 Aligned_cols=140 Identities=16% Similarity=0.267 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC----CceEEEeccCC-----CC------CCCCC---------CcccChh-hhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV----RRTMHIVNLDP-----AA------ENFDY---------PVAMDIR-ELI 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~----~G~i~i~~~d~-----~~------~~~~y---------~~~~~i~-e~i 57 (248)
-+-|++|.+|||||-..|.|+|..+.. .-+..+++.|. .. +++.. .|.-+|. +.+
T Consensus 34 Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlI 113 (330)
T COG4170 34 EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLI 113 (330)
T ss_pred eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHH
Confidence 467899999999999999999987642 22333444332 11 11111 1111111 111
Q ss_pred h---------------------HHHHHHHhCCCCCCchhhhHHhhhh------hHHHHHHHHHccCCCCCEEEEeCCCc-
Q 025795 58 S---------------------LEDVMEELGLGPNGGLIYCMEHLED------NLDDWLAEELDNYLDDDYLVFDCPGQ- 109 (248)
Q Consensus 58 ~---------------------~~~~m~~~~L~~~~~~~~~~~~l~~------~~~~~La~~l~~~~~p~~lilDEPt~- 109 (248)
. +-+++.++|+.+..+.. ..+.. .+++.||.|++. +|.++|.||||+
T Consensus 114 q~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM---~SYP~ElTeGE~QKVMIA~A~An--qPrLLIADEPTN~ 188 (330)
T COG4170 114 QNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM---RSYPYELTEGECQKVMIAIALAN--QPRLLIADEPTNS 188 (330)
T ss_pred hhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH---HhCcchhccCcceeeeeehhhcc--CCceEeccCCCcc
Confidence 1 55677788887665443 22222 244889999999 999999999999
Q ss_pred cCHHhHHHHHHHHHHHHHhC-CCeEEEEEecccccccChHHHHH
Q 025795 110 IELFTHVPVLRNFVDHLKSR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 110 LD~~~~~~~~~~ll~~l~~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+|+.++.+++ +++.++.+. |.+++.+ +|.+...+++++
T Consensus 189 ~e~~Tq~Qif-RLLs~mNQn~~TtILL~----s~Dl~~is~W~d 227 (330)
T COG4170 189 MEPTTQAQIF-RLLSRLNQNSNTTILLI----SHDLQMISQWAD 227 (330)
T ss_pred cCccHHHHHH-HHHHHhhccCCceEEEE----cccHHHHHHHhh
Confidence 9999999999 999999874 6666544 566666666655
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.25 E-value=3.8e-11 Score=99.83 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=40.0
Q ss_pred HHHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 86 DDWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 86 ~~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++.++++++. ..+|+++++|||++ +|+.....+. +.++++.+.|.+++++
T Consensus 102 r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~tiIii 154 (178)
T cd03239 102 LSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQFIVI 154 (178)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 3788888752 12899999999999 9999999988 7888886666776655
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.24 E-value=8.2e-11 Score=124.45 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHc---cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELD---NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 61 ~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~---~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
++++.+|++.. .+.. ...+++++ ++.||++++ . +|+++||||||+ ||+.....++ ++++++.++|.++
T Consensus 791 ~~L~~vGL~~l~l~q~--~~tLSGGE~QRV~LAraL~~~~~--~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~TV 865 (1809)
T PRK00635 791 HALCSLGLDYLPLGRP--LSSLSGGEIQRLKLAYELLAPSK--KPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHTV 865 (1809)
T ss_pred HHHHHcCCcchhhcCc--cccCCHHHHHHHHHHHHHhhcCC--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEE
Confidence 36677888753 2222 23455543 489999997 5 899999999999 9999999999 9999998778887
Q ss_pred EEE
Q 025795 134 CAV 136 (248)
Q Consensus 134 i~v 136 (248)
+++
T Consensus 866 IiI 868 (1809)
T PRK00635 866 VII 868 (1809)
T ss_pred EEE
Confidence 766
No 405
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.23 E-value=3.4e-11 Score=102.87 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g--~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
-.++|.||||+|||||+|.+.. .+ +..|...... .-.++|... ++.. +++..........
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----~~~~~~~d~-----------i~~~--l~~~~si~~~~S~ 91 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----SATIGLVDK-----------IFTR--MSSRESVSSGQSA 91 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----CcEEeeeee-----------eeee--eCCccChhhccch
Confidence 3578999999999999999983 33 4445433221 011222110 0000 0111000000112
Q ss_pred hhhhH-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 81 LEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 81 l~~~~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
+...+ ++.++.+++. +|.++|+|||+. +|+.....+...+++++.+.
T Consensus 92 f~~el~~l~~~l~~~~--~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~ 140 (213)
T cd03281 92 FMIDLYQVSKALRLAT--RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR 140 (213)
T ss_pred HHHHHHHHHHHHHhCC--CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 22222 2555666666 999999999999 99987666654788888654
No 406
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.21 E-value=2.5e-11 Score=103.72 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=32.5
Q ss_pred ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C-CeEEEE
Q 025795 94 DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N-FNVCAV 136 (248)
Q Consensus 94 ~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~-~~ii~v 136 (248)
+. +|+++++|||++ +|+.++..++ +++.++.++ | .+++++
T Consensus 146 ~~--~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viii 188 (213)
T cd03277 146 LT--RCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLI 188 (213)
T ss_pred cc--CCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEE
Confidence 46 999999999999 9999999999 888887655 5 345544
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.21 E-value=2e-10 Score=116.32 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=54.1
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 61 DVMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 61 ~~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
+.++.+||+.. .+.. ...++++ +++.||+++.. +| +++|||||++ ||+.....++ ++++++.+.|.++
T Consensus 812 ~~L~~vgL~~l~l~~~--~~tLSgGEkQRl~LAraL~~--~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~TV 886 (943)
T PRK00349 812 QTLVDVGLGYIKLGQP--ATTLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNTV 886 (943)
T ss_pred HHHHHCCCCcccccCC--cccCCHHHHHHHHHHHHHhc--CCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEE
Confidence 45566777642 1222 2345555 34889999998 88 9999999999 9999999999 8899987778888
Q ss_pred EEE
Q 025795 134 CAV 136 (248)
Q Consensus 134 i~v 136 (248)
+++
T Consensus 887 Iii 889 (943)
T PRK00349 887 VVI 889 (943)
T ss_pred EEE
Confidence 766
No 408
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.20 E-value=2e-10 Score=101.41 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~ 41 (248)
..++|+||||||||||++.++|.+++..|++.+.|.+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence 467999999999999999999999999999999988753
No 409
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.19 E-value=7.5e-11 Score=100.12 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHHHccCCCCCEEEEeCCC-----c-cCHHhHHHHHHHHHHHHHh
Q 025795 87 DWLAEELDNYLDDDYLVFDCPG-----Q-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 87 ~~La~~l~~~~~p~~lilDEPt-----~-LD~~~~~~~~~~ll~~l~~ 128 (248)
.+||+++.. +|+++++|||| + ||+.+.+.+. ++++++++
T Consensus 161 ~~ia~~l~~--~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 161 LWLARRLTN--DPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHHHHhh--cccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 799999999 99999999999 9 9999999999 88888864
No 410
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.16 E-value=2.3e-10 Score=104.84 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC--------CCCCceEEEeccCCCCC-CCCCCcc---cChhhhhh--------HHH
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPAAE-NFDYPVA---MDIRELIS--------LED 61 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l--------~~~~G~i~i~~~d~~~~-~~~y~~~---~~i~e~i~--------~~~ 61 (248)
.-+++|+|++||||||++++++|.. +|++|.|.+.-...++- .-.+.|. .++-+++. ..+
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~Ave 488 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVE 488 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhHHHH
Confidence 3468999999999999999999964 68889888754332211 0112222 23444432 678
Q ss_pred HHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 62 ~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
++++.|+++---.......++.++. ..||..++. .|.+++.||-.+ ||..+...+. +-+.++.+ .|.|++++
T Consensus 489 ILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~TA~rVA-rkiselaRe~giTlivv 564 (593)
T COG2401 489 ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDELTAVRVA-RKISELAREAGITLIVV 564 (593)
T ss_pred HHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHHHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 9999999865433444566776664 789999999 999999999999 9999999999 55667764 58887766
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=3.8e-10 Score=114.15 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=53.1
Q ss_pred HHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 61 DVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 61 ~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
++++.+||+.. .+.. ...++++. ++.||+++..- .+|+++|||||++ ||+.....+. ++++++.+.|.++++
T Consensus 810 ~~L~~~gL~~l~l~~~--~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQP--ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHcCCCchhhcCc--cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 45566677642 1121 23455553 48889999851 1489999999999 9999999999 889999777888876
Q ss_pred E
Q 025795 136 V 136 (248)
Q Consensus 136 v 136 (248)
+
T Consensus 887 i 887 (924)
T TIGR00630 887 I 887 (924)
T ss_pred E
Confidence 6
No 412
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=1.4e-10 Score=99.65 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=63.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-CCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l-~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
+++|.||||||||||++.+.-.. -...|- .-|+.. . .+. .+++++..+++.+.... ....+.
T Consensus 32 ~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~-~----~~~-----~~~~il~~~~l~d~~~~--~lS~~~ 94 (222)
T cd03285 32 FLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDS-A----DIP-----IVDCILARVGASDSQLK--GVSTFM 94 (222)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCccc-E----EEe-----ccceeEeeeccccchhc--CcChHH
Confidence 68999999999999999987320 000110 001100 0 000 13445566666544311 122333
Q ss_pred hhHHHHHHHHH--ccCCCCCEEEEeCC---Cc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 83 DNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l--~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
.++ ..+++++ +. +|+++|+||| |+ +|...... .+++.+.+ .+.+++++
T Consensus 95 ~e~-~~~a~il~~~~--~~sLvLLDEp~~gT~~lD~~~~~~---~il~~l~~~~~~~vlis 149 (222)
T cd03285 95 AEM-LETAAILKSAT--ENSLIIIDELGRGTSTYDGFGLAW---AIAEYIATQIKCFCLFA 149 (222)
T ss_pred HHH-HHHHHHHHhCC--CCeEEEEecCcCCCChHHHHHHHH---HHHHHHHhcCCCeEEEE
Confidence 344 6677777 45 9999999999 88 99887743 44566654 35665443
No 413
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.13 E-value=3.1e-10 Score=107.41 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=82.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CC-C---CCCCCCcccChhhhh-----------------hHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PA-A---ENFDYPVAMDIRELI-----------------SLED 61 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~-~---~~~~y~~~~~i~e~i-----------------~~~~ 61 (248)
-+.|.||||||||+|+|.+.|+-+..+|++..-... |. . ..-||.+.=|.||++ .+..
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 467999999999999999999998888887654321 01 0 112232222334433 2455
Q ss_pred HHHHhCCCCCCch---------hhhHHhhh--hhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC
Q 025795 62 VMEELGLGPNGGL---------IYCMEHLE--DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR 129 (248)
Q Consensus 62 ~m~~~~L~~~~~~---------~~~~~~l~--~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~ 129 (248)
.++.++|++...+ ..=++.++ +++|.++||.+.. +|++-||||-|+ ++......+. +. .++.
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~--kPk~AiLDE~TSAv~~dvE~~~Y-r~---~r~~ 616 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH--KPKFAILDECTSAVTEDVEGALY-RK---CREM 616 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc--CCceEEeechhhhccHHHHHHHH-HH---HHHc
Confidence 5555555532111 11123333 4567899999999 999999999999 9988776655 43 4455
Q ss_pred CCeEEEE
Q 025795 130 NFNVCAV 136 (248)
Q Consensus 130 ~~~ii~v 136 (248)
|+|.+.|
T Consensus 617 giT~iSV 623 (659)
T KOG0060|consen 617 GITFISV 623 (659)
T ss_pred CCeEEEe
Confidence 8887766
No 414
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.11 E-value=3e-10 Score=97.24 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCC----cccChhhhhhHHHHHHHhCCCCCCchhhhH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIYCM 78 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~~~~y~----~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~ 78 (248)
+++|+||||||||||+|.+++..-. ..|.. .......+++. +.+++++.+. .+ .
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~----vp~~~~~i~~~~~i~~~~~~~~~ls---------~g--------~ 90 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALIALLAQIGSF----VPASKAEIGVVDRIFTRIGASDDLA---------GG--------R 90 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhccCCe----eccccceecceeeEeccCCchhhhc---------cC--------c
Confidence 5789999999999999999864311 11210 01111222221 1222222211 00 0
Q ss_pred HhhhhhHHHHHHHHHccCCCCCEEEEeCC---Cc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 79 EHLEDNLDDWLAEELDNYLDDDYLVFDCP---GQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 79 ~~l~~~~~~~La~~l~~~~~p~~lilDEP---t~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
..+...+ ..++.++....+|+++|+||| |+ +|.... ...+++.+.+. +.+++++
T Consensus 91 s~f~~e~-~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~---~~~il~~l~~~~~~~vi~~ 149 (216)
T cd03284 91 STFMVEM-VETANILNNATERSLVLLDEIGRGTSTYDGLSI---AWAIVEYLHEKIGAKTLFA 149 (216)
T ss_pred chHHHHH-HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH---HHHHHHHHHhccCCcEEEE
Confidence 1122222 345555543338999999999 77 887542 22566766654 6666544
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.3e-10 Score=105.49 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=78.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCCCCCCC--------------------------CcccChhhh
Q 025795 5 QLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAAENFDY--------------------------PVAMDIREL 56 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~~~~~y--------------------------~~~~~i~e~ 56 (248)
+|++||||-|||||++.|+.- --|..=.+.+..+...+...+- .-+.++.+.
T Consensus 293 YGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaEr 372 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAER 372 (807)
T ss_pred ecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 589999999999999999863 2333445555444332111000 001112111
Q ss_pred hh-----------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHH
Q 025795 57 IS-----------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHV 116 (248)
Q Consensus 57 i~-----------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~ 116 (248)
+. ++.++.-+|+.+.-....+ ..+++++ ++.|||+|.. +|-+|.|||||+ ||+-...
T Consensus 373 l~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt-~kFSGGWRMRvSLARALfl--EPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 373 LKEVADELRAIGADSAEARARRILAGLGFSKEMQERPT-TKFSGGWRMRVSLARALFL--EPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCc-cccCCceeeehhHHHHHhc--CceeeeecCCccccccceee
Confidence 11 3455555565554333333 3456654 4999999999 999999999999 9997653
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecccccc
Q 025795 117 PVLRNFVDHLKSRNFNVCAVYLLDSQFI 144 (248)
Q Consensus 117 ~~~~~ll~~l~~~~~~ii~v~l~d~~~~ 144 (248)
.+- + .|+.+..|+++|. +|-.|+
T Consensus 450 WLd-N---YLQgWkKTLLIVS-HDQgFL 472 (807)
T KOG0066|consen 450 WLD-N---YLQGWKKTLLIVS-HDQGFL 472 (807)
T ss_pred ehh-h---HHhhhhheeEEEe-cccchH
Confidence 322 3 3444566777663 444443
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.06 E-value=3.2e-10 Score=113.07 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CCCCCc-eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
-.++|.||||+|||||+|.++|. +.+..| .|.... ...++|... + .. .+++.......+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~----~~~~~~~d~------i-----~~--~i~~~~si~~~LSt 385 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANE----HSEIPYFEE------I-----FA--DIGDEQSIEQNLST 385 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCc----cccccchhh------e-----ee--ecChHhHHhhhhhH
Confidence 36799999999999999999998 455555 221110 012333111 0 00 11111111111334
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++.++ ..++..+....+|.++|+|||++ +|+.....+...+++.+.+.|.+++++
T Consensus 386 fS~~m-~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viit 441 (771)
T TIGR01069 386 FSGHM-KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLIT 441 (771)
T ss_pred HHHHH-HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 55555 33333333323899999999999 999999988657888887777766554
No 417
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=6.4e-10 Score=95.64 Aligned_cols=115 Identities=15% Similarity=0.170 Sum_probs=66.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-CCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g-~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
+++|+||||+||||+++.+++ .+.+..|...+.. . -.++|...+ +..++-..+ .......+.
T Consensus 33 ~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i-----------~~~~~~~d~--~~~~~StF~ 95 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSV-----------LTRMGASDS--IQHGMSTFM 95 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceE-----------EEEecCccc--cccccchHH
Confidence 578999999999999999999 6677788754331 1 112332110 001111000 000012233
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
..+ ..++..+....++.++|+|||+. .++.....+...+++.+.+. +.+++++
T Consensus 96 ~e~-~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 96 VEL-SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred HHH-HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 333 44444444434899999999987 77666666544778888765 6555544
No 418
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.00 E-value=3.6e-09 Score=90.11 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhHH--HHHH--HHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNLD--DWLA--EELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNV 133 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~La--~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~i 133 (248)
+.+.+...++.+. .+++|.+ .+|| -|+....+.++++||||.+ ||...+..+. ++++++.+ +..+
T Consensus 123 ~~~~l~~~~i~~~--------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q~ 192 (220)
T PF02463_consen 123 LEELLPEVGISPE--------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQF 192 (220)
T ss_dssp HHHHHHCTTTTTT--------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSEE
T ss_pred ccccccccccccc--------ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence 5566777777665 4556543 2222 2333443778999999999 9999999998 88888854 3455
Q ss_pred EEE
Q 025795 134 CAV 136 (248)
Q Consensus 134 i~v 136 (248)
+++
T Consensus 193 ii~ 195 (220)
T PF02463_consen 193 IIT 195 (220)
T ss_dssp EEE
T ss_pred ccc
Confidence 544
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.98 E-value=1.6e-09 Score=99.74 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCCCCCcccChhhhhh------------HHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELIS------------LEDVMEELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L~ 69 (248)
.++..+|.||.|||||++.++|.++|+.| ++-..+.....+.+.-...-++|+.+. +.++|+-+.+.
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 35778999999999999999999999875 444444333333332222335555443 55666655443
Q ss_pred CCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeE
Q 025795 70 PNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNV 133 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~i 133 (248)
.--+.- ...++++ +|++++.++.. .+++++.|||.. +|...+.... +.+++.. ..+++-
T Consensus 448 ~i~dqe--vq~lSggelQRval~KOGGK--pAdvYliDEpsAylDSeQRi~As-kvikRfilhakkta 510 (592)
T KOG0063|consen 448 NIIDQE--VQGLSGGELQRVALALCLGK--PADVYLIDEPSAYLDSEQRIIAS-KVIKRFILHAKKTA 510 (592)
T ss_pred HHHhHH--hhcCCchhhHHHHHHHhcCC--CCceEEecCchhhcChHHHHHHH-HHHHHHHHhccchh
Confidence 321111 2233333 45888888888 899999999999 9999988877 6666643 444444
No 420
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.91 E-value=7e-09 Score=82.66 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=66.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhh---HHhh
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC---MEHL 81 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~---~~~l 81 (248)
++|.||||+||||+++.+++...+.++.+.+...+..... ..... ......+...+...... ....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 70 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--------LTERL---IGESLKGALDNLIIVFATADDPAA 70 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--------HHHHH---hhhhhccccccEEEEEcCCCCCcH
Confidence 6899999999999999999998888888888765432111 00000 00111111000000000 0001
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHh---------HHHHHHHHHHHHHhCCCeEEEEE
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFT---------HVPVLRNFVDHLKSRNFNVCAVY 137 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~---------~~~~~~~ll~~l~~~~~~ii~v~ 137 (248)
......+.+.+... +|+++++|||+. ++... ....+.++....++.+.+++++.
T Consensus 71 ~~~~~~~~~~~~~~--~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~ 134 (165)
T cd01120 71 ARLLSKAERLRERG--GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTL 134 (165)
T ss_pred HHHHHHHHHHHhCC--CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence 00111344555555 899999999997 54432 12333366666655688877764
No 421
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.91 E-value=3.4e-09 Score=91.56 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCc-c----CHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025795 98 DDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (248)
Q Consensus 98 ~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~~~~~ii~v~l 138 (248)
+|+++++|||++ + |+...+.+. ++++.+++.|.+++++|.
T Consensus 117 ~~~~lVIDe~t~~l~~~~d~~~~~~l~-~~l~~l~~~g~tvi~t~~ 161 (230)
T PRK08533 117 EKDVIIIDSLSSLISNDASEVAVNDLM-AFFKRISSLNKVIILTAN 161 (230)
T ss_pred CCCEEEEECccHHhcCCcchHHHHHHH-HHHHHHHhCCCEEEEEec
Confidence 799999999998 7 677777777 888888777777766653
No 422
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.86 E-value=4.3e-09 Score=93.20 Aligned_cols=54 Identities=17% Similarity=-0.060 Sum_probs=38.8
Q ss_pred hhhhHH--HHHHHHHccC--CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 81 l~~~~~--~~La~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++++ +.+|++++.. .+|+++++|||++ +|+.....+. ++++++.+ +.+++++
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~-~~l~~~~~-~~tii~i 229 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVG-KKLKELSR-SHQVLCI 229 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 445433 5666544321 2899999999999 9999999998 88888754 5666555
No 423
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.86 E-value=8.1e-09 Score=97.18 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC---Cccc---Chhhhhh-----------------HH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY---PVAM---DIRELIS-----------------LE 60 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y---~~~~---~i~e~i~-----------------~~ 60 (248)
-+.|+||||||||+|+|+|.|+-+...|...+- ..+.+-| .|.+ +.||+|- ++
T Consensus 510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~ 585 (728)
T KOG0064|consen 510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLE 585 (728)
T ss_pred eEEEECCCCccHHHHHHHHhccCcccCCeeecC----CCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHH
Confidence 367999999999999999999988777765431 1111111 1111 2222221 22
Q ss_pred HHHHHhCCCC-----CC--chhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 61 DVMEELGLGP-----NG--GLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 61 ~~m~~~~L~~-----~~--~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
.++..+.|.. .| +...-.+.+++ +++..+||.+.+ +|+|.++||-|+ +-+.....+. +..+..|
T Consensus 586 ~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yH--rPkyalLDEcTsAvsidvE~~i~----~~ak~~g 659 (728)
T KOG0064|consen 586 AILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYH--RPKYALLDECTSAVSIDVEGKIF----QAAKDAG 659 (728)
T ss_pred HHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhc--CcchhhhhhhhcccccchHHHHH----HHHHhcC
Confidence 2333222211 00 01111234444 356888999988 999999999998 7666654444 4444568
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++.|
T Consensus 660 i~llsi 665 (728)
T KOG0064|consen 660 ISLLSI 665 (728)
T ss_pred ceEEEe
Confidence 887655
No 424
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.86 E-value=2.1e-08 Score=93.63 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-CC--------CCCCC----------CcccChhhhhh-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-AA--------ENFDY----------PVAMDIRELIS----- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-~~--------~~~~y----------~~~~~i~e~i~----- 58 (248)
-++||.|-.|-|-+.|+.+|+|+.++.+|+|.+.|.|. .. ..+.| .+++++.+++-
T Consensus 285 EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 285 EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 47999999999999999999999998899999999885 11 12333 22455555542
Q ss_pred ------------------HHHHHHHhCCCCCCchhhhHHhhhh-h-HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795 59 ------------------LEDVMEELGLGPNGGLIYCMEHLED-N-LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (248)
Q Consensus 59 ------------------~~~~m~~~~L~~~~~~~~~~~~l~~-~-~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (248)
..+++++|+.-+.+.... ...+++ | +++.+||.+.. +|++||+-.||. ||..+...
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-a~~LSGGNqQK~IlaREl~~--~p~lLI~~qPTrGLDvgA~~~ 441 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELAR--RPDLLIAAQPTRGLDVGAIEF 441 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc-hhhcCCcceehhhhhhhhcc--CCCEEEEcCCCccccHHHHHH
Confidence 678888998874433332 234444 3 45889999999 999999999999 99999988
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 025795 118 VLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 118 ~~~~ll~~l~~~~~~ii~v 136 (248)
+. +.+.+.++.|..++++
T Consensus 442 I~-~~l~e~r~~G~AVLLi 459 (501)
T COG3845 442 IH-ERLLELRDAGKAVLLI 459 (501)
T ss_pred HH-HHHHHHHhcCCEEEEE
Confidence 87 6666777789888766
No 425
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=5.4e-08 Score=81.03 Aligned_cols=124 Identities=14% Similarity=0.234 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEec-cCCCC------------CCCCCCcccChhhhhh----HHHHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVN-LDPAA------------ENFDYPVAMDIRELIS----LEDVME 64 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~-~d~~~------------~~~~y~~~~~i~e~i~----~~~~m~ 64 (248)
++.|+|.||||||||+..|+--... .+|.=-+.+ .|+.. ...+-.-.+....... ++|+..
T Consensus 39 IT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~ 118 (233)
T COG3910 39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEADG 118 (233)
T ss_pred eEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhhhh
Confidence 6889999999999999999754422 222211111 11110 0000000112222222 455554
Q ss_pred HhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 65 ELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+-+.+++. +...+.+-+ ..+.+.+. ..-++|+|||-+ |-+..+-+++ .+++.+.+.|..+|++
T Consensus 119 e~~~~~~s-----Lh~~SHGEsf~~i~~~rf~---~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ~IiA 184 (233)
T COG3910 119 EANYGGRS-----LHHMSHGESFLAIFHNRFN---GQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQIIIA 184 (233)
T ss_pred hcccCCcc-----hhhhccchHHHHHHHHHhc---cCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCeEEEE
Confidence 44544432 233333321 33344433 568999999999 9999999999 9999998888766654
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.82 E-value=1.2e-07 Score=85.70 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++++|||||||||++..|++++.+.+++|.+.+.|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 368999999999999999999999999889999998886
No 427
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.81 E-value=7e-08 Score=81.39 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=59.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.++|.||+||||||+++.+.+.+.+. +|.|...+.++. ...... +.. ......+.. .
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E---~~~~~~---~~~------i~q~~vg~~----------~ 60 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE---FVHESK---RSL------INQREVGLD----------T 60 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc---ccccCc---cce------eeecccCCC----------c
Confidence 47899999999999999999888654 567766543221 111100 000 001111111 0
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..+...+++++.. +|+++++|||. |..... ..++ ....|..++.+
T Consensus 61 ~~~~~~i~~aLr~--~pd~ii~gEir--d~e~~~----~~l~-~a~~G~~v~~t 105 (198)
T cd01131 61 LSFENALKAALRQ--DPDVILVGEMR--DLETIR----LALT-AAETGHLVMST 105 (198)
T ss_pred cCHHHHHHHHhcC--CcCEEEEcCCC--CHHHHH----HHHH-HHHcCCEEEEE
Confidence 1233667888888 99999999997 333222 3333 33567765543
No 428
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.79 E-value=1.5e-09 Score=91.80 Aligned_cols=122 Identities=25% Similarity=0.315 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCC-----CcccChhhhhhHHHHHHHhCCCCCCchhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 77 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y-----~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~ 77 (248)
+-++++|+.|+|||||++.+.+...+......+.+..++....++ .+..|++.+..++.++..+..++++.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 678999999999999999999998887777666666665544444 345677888888999999999998866533
Q ss_pred HHhhhhh----HHHHHHHHHccCCC-CCEEEEeCCCccCHHhHHHHHHHHHHHH
Q 025795 78 MEHLEDN----LDDWLAEELDNYLD-DDYLVFDCPGQIELFTHVPVLRNFVDHL 126 (248)
Q Consensus 78 ~~~l~~~----~~~~La~~l~~~~~-p~~lilDEPt~LD~~~~~~~~~~ll~~l 126 (248)
....... ...|+...... . +++.+++-|.+.|.+.+......+.+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL--APDDVPILLVGNKIDLFDEQSSSEEILNQL 137 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh--CCCCceEEEEecccccccchhHHHHHHhhh
Confidence 2222122 11444433333 3 4799999999999999887773444443
No 429
>PRK13695 putative NTPase; Provisional
Probab=98.77 E-value=1.2e-08 Score=84.03 Aligned_cols=122 Identities=17% Similarity=0.253 Sum_probs=60.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-----CCCCCCCCcccChhhhh-hHHHHHHHhCC-CCCC--ch
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-----AAENFDYPVAMDIRELI-SLEDVMEELGL-GPNG--GL 74 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-----~~~~~~y~~~~~i~e~i-~~~~~m~~~~L-~~~~--~~ 74 (248)
.++|+|++|||||||++.+.+.+.+ .|. .+.+.-. ......+ ++.+.. .....+...+. +... ..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-KVGGFYTEEVREGGKRIGF----KIIDLDTGEEGILARVGFPSRPRVGKY 75 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEcHHHHhcCCccce----EEEEcCCCCeEEccccCCCCCCceeeE
Confidence 4789999999999999999887665 342 2222211 0111111 111110 00111222222 1111 11
Q ss_pred hhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 75 ~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
....+-+ +.....+++.... +|+++++|||+.++... .... +.+..+.+.+.+++++
T Consensus 76 ~~~lsgl-e~~~~~l~~~~l~--~~~~lllDE~~~~e~~~-~~~~-~~l~~~~~~~~~~i~v 132 (174)
T PRK13695 76 VVNLEDL-ERIGIPALERALE--EADVIIIDEIGKMELKS-PKFV-KAVEEVLDSEKPVIAT 132 (174)
T ss_pred EEehHHH-HHHHHHHHHhccC--CCCEEEEECCCcchhhh-HHHH-HHHHHHHhCCCeEEEE
Confidence 1111111 1111344444445 89999999987666555 3344 6666665667777665
No 430
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=2.3e-08 Score=102.37 Aligned_cols=128 Identities=18% Similarity=0.244 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC---CCceEEEeccCCCC----CCCCC-------CcccChhhhhh-----------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET---VRRTMHIVNLDPAA----ENFDY-------PVAMDIRELIS----------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~---~~G~i~i~~~d~~~----~~~~y-------~~~~~i~e~i~----------- 58 (248)
.+.++||+|||||||+++++|-... ..|+|.++|.+... ....| .|.+|||+.+.
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 3679999999999999999997643 35689999977521 11222 23456666553
Q ss_pred -------------HHHHHHHhCCCCCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 59 -------------LEDVMEELGLGPNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
.+.+++.+||..-.+-... ..-.+++. |+.++..++. ++.+++.||+|. ||..+.-++.
T Consensus 223 ~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~--~~~~~~~De~t~GLDSsTal~ii 300 (1391)
T KOG0065|consen 223 YDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVG--PASILFWDEITRGLDSSTAFQII 300 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeec--CcceeeeecccccccHHHHHHHH
Confidence 4578888998653322211 11122333 3888888888 999999999999 9999999999
Q ss_pred HHHHHHHHhC-CCeEE
Q 025795 120 RNFVDHLKSR-NFNVC 134 (248)
Q Consensus 120 ~~ll~~l~~~-~~~ii 134 (248)
+.++.+... +.+.+
T Consensus 301 -k~lr~~a~~~~~t~~ 315 (1391)
T KOG0065|consen 301 -KALRQLAHITGATAL 315 (1391)
T ss_pred -HHHHHHHhhhcceEE
Confidence 888888754 44443
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.72 E-value=4.2e-08 Score=98.28 Aligned_cols=112 Identities=15% Similarity=0.211 Sum_probs=66.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccCCCCC--CCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLDPAAE--NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~d~~~~--~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
+++|.|||++||||++|.+... +-+..|-. -|+.+ .+++.. .+ +. .+|...........
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~~-----vpa~~~~~i~~~~------~i-----~~--~ig~~~si~~~lSt 390 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGLP-----IPANEPSEIPVFK------EI-----FA--DIGDEQSIEQSLST 390 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-----cccCCCccccccc------eE-----EE--ecCCccchhhchhH
Confidence 5789999999999999998643 12222210 02221 233311 11 11 12222111112334
Q ss_pred hhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 81 l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++.++. ..+++++ . +|.++|+|||+. +|+.....+...+++.+.+.|.+++++
T Consensus 391 fS~~m~~~~~Il~~~-~--~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit 446 (782)
T PRK00409 391 FSGHMTNIVRILEKA-D--KNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT 446 (782)
T ss_pred HHHHHHHHHHHHHhC-C--cCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 555552 3344443 3 899999999999 999998888757888887767666554
No 432
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.72 E-value=1.3e-07 Score=100.82 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=53.2
Q ss_pred HHHHHhCCCCC--CchhhhHHhhhhh--HHHHHHHHHccC-CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEE
Q 025795 61 DVMEELGLGPN--GGLIYCMEHLEDN--LDDWLAEELDNY-LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVC 134 (248)
Q Consensus 61 ~~m~~~~L~~~--~~~~~~~~~l~~~--~~~~La~~l~~~-~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii 134 (248)
+.|.++|||-. |.. ...++++ +|+.||..|..- ..+.+++|||||. |++.....++ +++++|...|.|++
T Consensus 1681 ~~L~~vGLgYl~LGq~---~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvi 1756 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQN---LSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVI 1756 (1809)
T ss_pred HHHHHcCCCeeeCCCc---CCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEE
Confidence 44556666632 211 2345554 568899888751 1268999999999 9999999999 99999998899998
Q ss_pred EE
Q 025795 135 AV 136 (248)
Q Consensus 135 ~v 136 (248)
+|
T Consensus 1757 vi 1758 (1809)
T PRK00635 1757 YI 1758 (1809)
T ss_pred EE
Confidence 77
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.7e-07 Score=92.16 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=48.6
Q ss_pred hhhhh--HHHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE-Eecccc
Q 025795 80 HLEDN--LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLLDSQ 142 (248)
Q Consensus 80 ~l~~~--~~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~d~~ 142 (248)
.++++ +|+.||..|.. +. .++||||||. |-..-...++ +++++|...|.||++| |.+|..
T Consensus 822 TLSGGEaQRvKLA~EL~k--~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnTViVIEHNLdVI 888 (935)
T COG0178 822 TLSGGEAQRVKLAKELSK--RSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNTVIVIEHNLDVI 888 (935)
T ss_pred cccchHHHHHHHHHHHhh--ccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecccceE
Confidence 34443 56889999886 44 8999999999 9999999999 9999999899999887 555543
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=9.2e-08 Score=82.06 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCC-CCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAE-NFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~-~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
+++|.||||+||||+++.+.+..-. .-|- .-|+.. .+++. +. ++..++-..+ .......+
T Consensus 32 ~~~itG~n~~gKs~~l~~i~~~~~la~~G~-----~vpa~~~~i~~~------~~-----i~~~~~~~d~--~~~~~StF 93 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-----DVPAKSMRLSLV------DR-----IFTRIGARDD--IMKGESTF 93 (218)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHHcCC-----ccCccccEeccc------cE-----EEEecCcccc--cccCcchH
Confidence 5789999999999999999886321 1121 001110 11111 00 0111111111 00001123
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
...+ ..+++.+....+|.++++|||+. .++.....+...+++.+.+. +.+++++
T Consensus 94 ~~e~-~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 94 MVEL-SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred HHHH-HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 2333 33444444333899999999998 99999888886668888764 6666544
No 435
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.69 E-value=2.1e-06 Score=68.21 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 025795 5 QLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g 24 (248)
++++|++|||||||++.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.69 E-value=1.3e-07 Score=77.91 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCc-cC---HHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 98 DDDYLVFDCPGQ-IE---LFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 98 ~p~~lilDEPt~-LD---~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+|+++++|||+. +| ...+..+. ++++.+++.|.+++++
T Consensus 95 ~~~~lviD~~~~~~~~~~~~~~~~i~-~l~~~l~~~g~tvi~v 136 (187)
T cd01124 95 KAKRVVIDSVSGLLLMEQSTARLEIR-RLLFALKRFGVTTLLT 136 (187)
T ss_pred CCCEEEEeCcHHHhhcChHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 899999999999 88 65555555 7888887778887766
No 437
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.67 E-value=1.4e-07 Score=84.91 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
..++|.||+|||||||++++.+++++..|.+.+. |+..-.+..+....+ . .. . ...+. ..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~~~~~~l---~-~~----~---~~~~~-------~~ 204 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPHPNYVHL---F-YS----K---GGQGL-------AK 204 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCCCCEEEE---E-ec----C---CCCCc-------Cc
Confidence 4689999999999999999999999988877664 221111111000000 0 00 0 00000 00
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCe
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
-.+...+..++.. +|+++++|||.. .+.+ .+++.+. .|..
T Consensus 205 ~~~~~~l~~~Lr~--~pd~ii~gE~r~------~e~~-~~l~a~~-~g~~ 244 (308)
T TIGR02788 205 VTPKDLLQSCLRM--RPDRIILGELRG------DEAF-DFIRAVN-TGHP 244 (308)
T ss_pred cCHHHHHHHHhcC--CCCeEEEeccCC------HHHH-HHHHHHh-cCCC
Confidence 1122556667777 999999999996 3444 6667765 4543
No 438
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.65 E-value=2.7e-06 Score=67.33 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
..++++|++|||||||++.+.|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 439
>PRK00089 era GTPase Era; Reviewed
Probab=98.65 E-value=1.3e-06 Score=77.70 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.++|+|++|||||||++.+.|.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999873
No 440
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.64 E-value=5.3e-07 Score=70.38 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (248)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl 177 (248)
..++.++|.|+.-+..............+.+. ... +++.+|+.......... ........+.|.+-|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~-~d~-il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER-ADL-ILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh-CCE-EEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 46899999999844433332211233333332 222 23345554443222221 233344568899999999999
Q ss_pred ccch
Q 025795 178 VTNK 181 (248)
Q Consensus 178 l~~~ 181 (248)
....
T Consensus 117 ~~~~ 120 (163)
T cd00880 117 LPEE 120 (163)
T ss_pred CChh
Confidence 7643
No 441
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.64 E-value=9.9e-07 Score=71.10 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~ 25 (248)
++|+|++|||||||++.+.|.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999863
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.63 E-value=3.2e-07 Score=70.16 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~ 36 (248)
-.+.|+||+||||||+++.+++.+......+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4678999999999999999999987765334443
No 443
>PRK14974 cell division protein FtsY; Provisional
Probab=98.58 E-value=2.8e-06 Score=77.38 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=33.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+++++++||||+||||++..++.++...+.+|.+.+-|+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 478999999999999999999998887777888876553
No 444
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.58 E-value=4.2e-08 Score=87.54 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i~~~d~ 40 (248)
++++||.|||||||||+++.|.+++. +.+|+|.+.+.|.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 58999999999999999999999987 6788998887764
No 445
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.58 E-value=1.1e-07 Score=83.89 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=32.9
Q ss_pred HhhhhhHH--HHHHHHHc---------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 79 EHLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 79 ~~l~~~~~--~~La~~l~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++.+++ ..++++++ . +|+++++|||++ ||+..+..+. +.++++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~--~~~illlDEp~a~LD~~~~~~l~-~~l~~~ 238 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSG--EYPVLLLDDVLAELDLGRQAALL-DAIEGR 238 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhC--CCcEEEEcCcchhcCHHHHHHHH-HHhhcC
Confidence 44455543 56676654 5 899999999999 9999998777 655543
No 446
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.57 E-value=1.2e-06 Score=71.91 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
|++++.||+||||||++..++..+...+.++.+.+.|+
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999999987766666788887775
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.56 E-value=1.7e-07 Score=86.63 Aligned_cols=131 Identities=19% Similarity=0.149 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--------CCCCCC--------------Ccc---------c
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--------AENFDY--------------PVA---------M 51 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--------~~~~~y--------------~~~---------~ 51 (248)
-+.+++|.||-||||-+++++|-++|.-|.-. .+.+.. .+-..| ++. .
T Consensus 101 ~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k~ 179 (592)
T KOG0063|consen 101 QVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVKG 179 (592)
T ss_pred hhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHHH
Confidence 35789999999999999999999999876531 111100 000011 000 0
Q ss_pred Chhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 52 DIRELIS-------LEDVMEELGLGPNGGLIYCMEHLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 52 ~i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
++++.+. .+++++.+.|+....+- .+.+++ .++.++|.+..+ +.++.+||||.+ ||...+.... .
T Consensus 180 ~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re--~~~lsggelqrfaia~~~vq--~advyMFDEpSsYLDVKQRLkaA-~ 254 (592)
T KOG0063|consen 180 TVGSLLDRKDERDNKEEVCDQLDLNNLLDRE--VEQLSGGELQRFAIAMVCVQ--KADVYMFDEPSSYLDVKQRLKAA-I 254 (592)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHhhHHHhh--hhhcccchhhhhhhhhhhhh--hcceeEecCCcccchHHHhhhHH-H
Confidence 1121111 34555555554332222 122322 344778888888 999999999999 9999999888 8
Q ss_pred HHHHHHhCC-CeEEEEEec
Q 025795 122 FVDHLKSRN-FNVCAVYLL 139 (248)
Q Consensus 122 ll~~l~~~~-~~ii~v~l~ 139 (248)
.++.+..-+ ..+++.|.+
T Consensus 255 ~IRsl~~p~~YiIVVEHDL 273 (592)
T KOG0063|consen 255 TIRSLINPDRYIIVVEHDL 273 (592)
T ss_pred HHHHhhCCCCeEEEEEeec
Confidence 888887644 334344543
No 448
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.56 E-value=5.2e-07 Score=72.96 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.7
Q ss_pred EEcCCCCcHHHHHHHHHhC
Q 025795 7 VIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 7 iiGpnGSGKSTl~~~l~g~ 25 (248)
|+|++|+|||||++.+.|.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 5899999999999999985
No 449
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.55 E-value=8.7e-07 Score=80.94 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=60.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.+.|.||+||||||+++.+.+.+.. .+++|.....++.. .++.. ...+ .....+.. .
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---~~~~~---~~~i------~q~evg~~----------~ 181 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---VHRNK---RSLI------NQREVGLD----------T 181 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---hccCc---cceE------EccccCCC----------C
Confidence 5789999999999999999997764 46777666432110 01000 0000 00011111 0
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..+...++.++.. +|+++++||+. |..+....+ +. ...|..++.+
T Consensus 182 ~~~~~~l~~~lr~--~pd~i~vgEir--d~~~~~~~l----~a-a~tGh~v~~T 226 (343)
T TIGR01420 182 LSFANALRAALRE--DPDVILIGEMR--DLETVELAL----TA-AETGHLVFGT 226 (343)
T ss_pred cCHHHHHHHhhcc--CCCEEEEeCCC--CHHHHHHHH----HH-HHcCCcEEEE
Confidence 1233667778888 99999999997 655553323 33 3567776544
No 450
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.55 E-value=9.2e-06 Score=67.21 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
.-++|+|++|+|||||++.+.+
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 3589999999999999999997
No 451
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.53 E-value=5.1e-06 Score=70.07 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.++|+|++|+|||||+++|+|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 452
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.52 E-value=6.3e-07 Score=75.64 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
+.+++++||+|+||||.+.-|+..+...+.+|.+...|..+ +.-.-.++.+.+.+|+.-...... +.-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R----------~ga~eQL~~~a~~l~vp~~~~~~~--~~~ 68 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR----------IGAVEQLKTYAEILGVPFYVARTE--SDP 68 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS----------THHHHHHHHHHHHHTEEEEESSTT--SCH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC----------ccHHHHHHHHHHHhccccchhhcc--hhh
Confidence 57899999999999999999998877667788887766421 111112344445555431110000 000
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHH
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 159 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (248)
.+-.+.++...-.. +-+++++|.||- -|.....++. ++++.. ....+++| +++..-.+. . . ....
T Consensus 69 ~~~~~~~l~~~~~~--~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~--~~~~~~LV--lsa~~~~~~--~-~---~~~~ 135 (196)
T PF00448_consen 69 AEIAREALEKFRKK--GYDLVLIDTAGRSPRDEELLEELK-KLLEAL--NPDEVHLV--LSATMGQED--L-E---QALA 135 (196)
T ss_dssp HHHHHHHHHHHHHT--TSSEEEEEE-SSSSTHHHHHHHHH-HHHHHH--SSSEEEEE--EEGGGGGHH--H-H---HHHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEecCCcchhhHHHHHHHH-HHhhhc--CCccceEE--EecccChHH--H-H---HHHH
Confidence 00011222222223 568999999995 5655555544 666655 23334333 333322211 1 1 1111
Q ss_pred HHHhhCCCeeeeecccccccchh
Q 025795 160 AMVQLELPHVNILSKMDLVTNKK 182 (248)
Q Consensus 160 ~~~~~~~p~~~vlsk~dll~~~~ 182 (248)
..-..+...+ |+||.|-..+.+
T Consensus 136 ~~~~~~~~~l-IlTKlDet~~~G 157 (196)
T PF00448_consen 136 FYEAFGIDGL-ILTKLDETARLG 157 (196)
T ss_dssp HHHHSSTCEE-EEESTTSSSTTH
T ss_pred HhhcccCceE-EEEeecCCCCcc
Confidence 1122344454 899999877654
No 453
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=1.9e-06 Score=85.46 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=31.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~ 40 (248)
-+++++||||+||||++..|++.+....| +|.+...|.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt 225 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS 225 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence 47899999999999999999999865554 787776663
No 454
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.48 E-value=1.1e-07 Score=81.95 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE-eccC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI-VNLD 39 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i-~~~d 39 (248)
++++||.||||||||||++.|++.+++.+|.+.+ ...|
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 4789999999999999999999999999998665 4443
No 455
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.47 E-value=6e-06 Score=72.78 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.++|+|++|+|||||++.+.|-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~ 23 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ 23 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999974
No 456
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.47 E-value=1.4e-06 Score=73.26 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i 35 (248)
++-++|+|++|+|||||++.|.|...+..|.+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~ 34 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPT 34 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCcccc
Confidence 3568999999999999999999987776666543
No 457
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.47 E-value=1.5e-06 Score=77.98 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
+.+++|+||+|||||||+..+.+.+...+.++.+.+.||..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 46789999999999999999999988888899999988753
No 458
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.47 E-value=7.1e-06 Score=71.39 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC--CCCCCceEE
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH--CETVRRTMH 34 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~ 34 (248)
.++|+|++||||||++++++|. .+...|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t 60 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence 4789999999999999999997 555566554
No 459
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.45 E-value=2.1e-06 Score=80.77 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
-.++|+|+||+|||||+++|+|..+++.|.+.+.|...
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 35799999999999999999999999999999887654
No 460
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.44 E-value=2.9e-06 Score=68.23 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
++|+|++|+|||||++.+.+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 68999999999999999988543
No 461
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.43 E-value=1.4e-06 Score=69.42 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
|-++++|++|+|||||++.+.+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999843
No 462
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.43 E-value=1.5e-06 Score=70.81 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+++|+|++|||||||++.+.+..+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~ 25 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH 25 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc
Confidence 467999999999999999887643
No 463
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=2.6e-06 Score=78.47 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=51.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
-+++++||||+||||++..|++.+....| +|.+...|.-. ....|+ +..+.+.+|+.-... .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R--------~ga~Eq--L~~~a~~~gv~~~~~------~ 201 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR--------IGGHEQ--LRIFGKILGVPVHAV------K 201 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc--------ccHHHH--HHHHHHHcCCceEec------C
Confidence 47889999999999999999987543323 56666544311 011222 223334445422110 0
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHH
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELF 113 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~ 113 (248)
-...+ ..++..+.+.+++|+|+||- .|..
T Consensus 202 ~~~~l----~~~l~~l~~~DlVLIDTaG~~~~d~~ 232 (374)
T PRK14722 202 DGGDL----QLALAELRNKHMVLIDTIGMSQRDRT 232 (374)
T ss_pred CcccH----HHHHHHhcCCCEEEEcCCCCCcccHH
Confidence 00111 22233222789999999994 6655
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.42 E-value=2.7e-07 Score=76.94 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
..++|+|||||||||++++++|+++++.|.+.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIED 60 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence 46899999999999999999999999999888754
No 465
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.42 E-value=6.7e-07 Score=75.03 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=36.4
Q ss_pred hhhHH--HHHHHHHccCCCC-CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 82 EDNLD--DWLAEELDNYLDD-DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 82 ~~~~~--~~La~~l~~~~~p-~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+.|.+ ..+...+....+. .++++|||-+ |.|...+.++ ++++.+.+.+..++++
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Qviit 295 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQVIIT 295 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCEEEEe
Confidence 44443 2455555542233 8999999998 9999999999 8887775545556544
No 466
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.41 E-value=1.1e-05 Score=64.58 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
..++++|+.|+|||||++.+.+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCc
Confidence 46899999999999999999864
No 467
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.40 E-value=7.3e-07 Score=74.14 Aligned_cols=112 Identities=18% Similarity=0.423 Sum_probs=62.2
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (248)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl 177 (248)
...+-++|+||..|. ..+..+.+...+..++ ++|+..-..+.. .-........+.|.+-|+||+|+
T Consensus 69 ~~~i~~iDtPG~~~f------~~~~~~~~~~~D~ail---vVda~~g~~~~~-----~~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHEDF------IKEMIRGLRQADIAIL---VVDANDGIQPQT-----EEHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSHHH------HHHHHHHHTTSSEEEE---EEETTTBSTHHH-----HHHHHHHHHTT-SEEEEEETCTS
T ss_pred ccceeecccccccce------eecccceeccccccee---eeeccccccccc-----ccccccccccccceEEeeeeccc
Confidence 567999999997542 2244445544444333 355543332221 12233445778899999999999
Q ss_pred ccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhc--CCeeeEEeeccccH--HHHHHHHhh
Q 025795 178 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKES--RRLLSQIMK 244 (248)
Q Consensus 178 l~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~--~~~~f~~l~~~~~~--~~~~~~id~ 244 (248)
++.+ +++. ..++...+.+-...- ..+.++|+|..... ..|+..+.+
T Consensus 135 ~~~~--~~~~-------------------~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 135 IEKE--LEEI-------------------IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp SHHH--HHHH-------------------HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred hhhh--HHHH-------------------HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 8221 2111 112222222222111 35789999999988 777777765
No 468
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.39 E-value=1.3e-06 Score=75.26 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCCCCceEEEecc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLY-RHCETVRRTMHIVNL 38 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i~i~~~ 38 (248)
.++.|.|++|||||||+..++ +.++ .++++.+...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~ 61 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITT 61 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEc
Confidence 578899999999999999984 4343 4667777665
No 469
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.38 E-value=1.8e-05 Score=61.60 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++++|++|||||||++.+.+-.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998743
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.36 E-value=3.5e-06 Score=72.86 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh------------CCCCCCceEEEecc-CCCCCCCCCCcccChhhhhhHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVNL-DPAAENFDYPVAMDIRELISLEDVMEELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g------------~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~ 69 (248)
++..|+||+|+|||||+-.++= ......|+|.+... ++.. .+.+ .+..+...+++.
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~---------~i~~--Rl~~i~~~~~~~ 70 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE---------EIHR--RLEAILQHLEPD 70 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH---------HHHH--HHHHHHhhcCCc
Confidence 4678999999999999988863 22334566655542 2211 0111 133333333322
Q ss_pred CCCchhh---------hH-----HhhhhhHHHHHHHHH-ccCCCCCEEEEeCCCc-------cCHHhHHHHHHHHHHHHH
Q 025795 70 PNGGLIY---------CM-----EHLEDNLDDWLAEEL-DNYLDDDYLVFDCPGQ-------IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 70 ~~~~~~~---------~~-----~~l~~~~~~~La~~l-~~~~~p~~lilDEPt~-------LD~~~~~~~~~~ll~~l~ 127 (248)
+...+.+ +. ......+ ..+...+ .. +|+++++| |.+ .|......++ +.++++.
T Consensus 71 ~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~-~~l~~~~~~~--~~~lvviD-pl~~~~~~~~~d~~~~~~~~-~~L~~~a 145 (239)
T cd01125 71 DAGDRLFIDSGRIQPISIAREGRIIVVPEF-ERIIEQLLIR--RIDLVVID-PLVSFHGVSENDNGAMDAVI-KALRRIA 145 (239)
T ss_pred CcccceEEeccCCCceecccCCcccccHHH-HHHHHHHHhc--CCCEEEEC-ChHHhCCCCcCCHHHHHHHH-HHHHHHH
Confidence 2111000 00 0011122 3333333 34 89999999 753 4777777777 6666665
Q ss_pred h-CCCeEEEEE
Q 025795 128 S-RNFNVCAVY 137 (248)
Q Consensus 128 ~-~~~~ii~v~ 137 (248)
+ .|.+++++|
T Consensus 146 ~~~g~avl~v~ 156 (239)
T cd01125 146 AQTGAAILLVH 156 (239)
T ss_pred HHhCCEEEEEe
Confidence 4 588888886
No 471
>PRK09866 hypothetical protein; Provisional
Probab=98.36 E-value=6e-05 Score=73.47 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
++++|+|++|+|||||+++|.|..
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~ 93 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTE 93 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 678999999999999999999964
No 472
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.36 E-value=3.8e-06 Score=68.40 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~ 83 (248)
-++++|.+-+|||||++.|+|.. ..+.|. |..|+.- ..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~------~~v~n~----------pG~Tv~~-------------------------~~g 40 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK------QKVGNW----------PGTTVEK-------------------------KEG 40 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS------EEEEES----------TTSSSEE-------------------------EEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------ceecCC----------CCCCeee-------------------------eeE
Confidence 37899999999999999999974 333332 1112210 000
Q ss_pred hHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHH
Q 025795 84 NLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 161 (248)
Q Consensus 84 ~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~ 161 (248)
.+ -.. +.++.++|-||. +...+..+.+ ..+.+.... .=++++.+|+.... .-+......
T Consensus 41 ~~-------~~~--~~~~~lvDlPG~ysl~~~s~ee~v--~~~~l~~~~-~D~ii~VvDa~~l~-------r~l~l~~ql 101 (156)
T PF02421_consen 41 IF-------KLG--DQQVELVDLPGIYSLSSKSEEERV--ARDYLLSEK-PDLIIVVVDATNLE-------RNLYLTLQL 101 (156)
T ss_dssp EE-------EET--TEEEEEEE----SSSSSSSHHHHH--HHHHHHHTS-SSEEEEEEEGGGHH-------HHHHHHHHH
T ss_pred EE-------Eec--CceEEEEECCCcccCCCCCcHHHH--HHHHHhhcC-CCEEEEECCCCCHH-------HHHHHHHHH
Confidence 00 002 567999999994 7777654432 122232333 33466678887653 223445566
Q ss_pred HhhCCCeeeeecccccccch
Q 025795 162 VQLELPHVNILSKMDLVTNK 181 (248)
Q Consensus 162 ~~~~~p~~~vlsk~dll~~~ 181 (248)
..++.|.+-|+||+|+++++
T Consensus 102 ~e~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 102 LELGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTTSSEEEEEETHHHHHHT
T ss_pred HHcCCCEEEEEeCHHHHHHc
Confidence 68899999999999998765
No 473
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.36 E-value=1.9e-06 Score=75.34 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G 31 (248)
.++|+||+|+||||+++.+.+.+....+
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~f 45 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHP 45 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccC
Confidence 5789999999999999999998877543
No 474
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.36 E-value=2e-05 Score=64.25 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
++|+|..|||||||++.+.+...+
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~ 25 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGD 25 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCC
Confidence 689999999999999999987544
No 475
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.35 E-value=2.5e-07 Score=79.41 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLD 39 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d 39 (248)
++||.||||||||||++.|.+.+.+ .++++.+...|
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 4799999999999999999999875 56777775544
No 476
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.35 E-value=2e-06 Score=66.39 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~ 36 (248)
.+.|.||+|+||||+++.+...+...+..+.+.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 578999999999999999999876444444444
No 477
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.34 E-value=3.6e-06 Score=67.80 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-++++|++|||||||++.+.+.-
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999998753
No 478
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.34 E-value=8.7e-07 Score=67.71 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~ 25 (248)
++|+|++|+|||||++.|.|.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999973
No 479
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.33 E-value=3.9e-06 Score=64.44 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeeeccccc
Q 025795 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 177 (248)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dl 177 (248)
+.++.+.|.|++-+..... ....+..-.++++ +|+..-....................+.|.+-|+||+|+
T Consensus 44 ~~~~~l~D~~g~~~~~~~~-------~~~~~~~~~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLR-------RLYYRGADGIILV--YDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEecCChHHHHhHH-------HHHhcCCCEEEEE--EECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 5678999999973332221 1111222233333 444432222222111123445566778999999999998
Q ss_pred ccch
Q 025795 178 VTNK 181 (248)
Q Consensus 178 l~~~ 181 (248)
....
T Consensus 115 ~~~~ 118 (157)
T cd00882 115 PEER 118 (157)
T ss_pred cccc
Confidence 6543
No 480
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.33 E-value=4e-06 Score=77.60 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
.+++++|||||||||++..|++.+...+.+|.+...|+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47899999999999999999998765555777776664
No 481
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.33 E-value=5.3e-07 Score=68.80 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
-+++|+||+|||||||++++. +|++.++|.|.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 468999999999999999986 78899998776
No 482
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.31 E-value=1.2e-06 Score=70.58 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
++++|++||||||+++.+...+.+.++++.+.+.|+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 68999999999999999999999999999999998754
No 483
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.31 E-value=5.3e-06 Score=65.39 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|||||||++.+.+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999874
No 484
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.30 E-value=1.8e-05 Score=69.09 Aligned_cols=96 Identities=24% Similarity=0.328 Sum_probs=56.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~ 83 (248)
.++|.||+||||||+++.+...+.+. .+.+.... .+..+..+. ...+...+|+.+.+... .....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~--~~~~~~~~--------~~~~~~~~~--l~~i~~~lG~~~~~~~~---~~~~~ 109 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQE--RVVAAKLV--------NTRVDAEDL--LRMVAADFGLETEGRDK---AALLR 109 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--CeEEeeee--------CCCCCHHHH--HHHHHHHcCCCCCCCCH---HHHHH
Confidence 57899999999999999999987753 23222211 112234442 44566777776544221 11222
Q ss_pred hHHHHHHHHH-ccCCCCCEEEEeCCCccCHHhHH
Q 025795 84 NLDDWLAEEL-DNYLDDDYLVFDCPGQIELFTHV 116 (248)
Q Consensus 84 ~~~~~La~~l-~~~~~p~~lilDEPt~LD~~~~~ 116 (248)
.+..++.... .. ++.++++||.-.++.....
T Consensus 110 ~l~~~l~~~~~~~--~~~vliiDe~~~l~~~~~~ 141 (269)
T TIGR03015 110 ELEDFLIEQFAAG--KRALLVVDEAQNLTPELLE 141 (269)
T ss_pred HHHHHHHHHHhCC--CCeEEEEECcccCCHHHHH
Confidence 3323333323 33 6779999996668866543
No 485
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.29 E-value=3e-05 Score=65.32 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++++|+.|+|||||+..|.+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~ 26 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998754
No 486
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.29 E-value=8.9e-06 Score=72.05 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.+++++||+|+||||.+..++..+...+.+|.+...|+.. ....-....+.+..++.-..... ..+ ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r----------~~a~~ql~~~~~~~~i~~~~~~~-~~d-p~ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR----------AAAIEQLEEWAKRLGVDVIKQKE-GAD-PA 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC----------HHHHHHHHHHHHhCCeEEEeCCC-CCC-HH
Confidence 5788999999999999999999888777789998877621 11122344455555533110000 000 00
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHH
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDH 125 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~ 125 (248)
......+..+... +-+++|+|.|+. .|.....++. ++.+.
T Consensus 141 ~~~~~~l~~~~~~--~~D~ViIDT~G~~~~d~~~~~el~-~~~~~ 182 (272)
T TIGR00064 141 AVAFDAIQKAKAR--NIDVVLIDTAGRLQNKVNLMDELK-KIKRV 182 (272)
T ss_pred HHHHHHHHHHHHC--CCCEEEEeCCCCCcchHHHHHHHH-HHHHH
Confidence 0000223333345 789999999996 4544444433 44443
No 487
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.27 E-value=4.5e-05 Score=65.63 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCCCCceE
Q 025795 5 QLVIGPAGSGKSTYCSSLY-RHCETVRRTM 33 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~-g~l~~~~G~i 33 (248)
++++|++|+|||||++.+. |...+..|..
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~ 31 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKA 31 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeE
Confidence 5789999999999999998 5555544433
No 488
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.26 E-value=7.1e-07 Score=75.55 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
.+++|+||||||||||++.|++.+++ +.+.+...|
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D 41 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD 41 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence 68999999999999999999999876 445555444
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.26 E-value=7e-07 Score=74.87 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+++|.||+|||||||++.|.+.+ .+|.+.+.+.|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 47999999999999999999988 456777777663
No 490
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.26 E-value=8.1e-07 Score=83.69 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPA 41 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~ 41 (248)
-+++|+||+|||||||++ .|..+|++| +|.++|.+..
T Consensus 33 Eiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred CEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 478999999999999999 788888888 7999997763
No 491
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.24 E-value=1.6e-05 Score=64.06 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
-++|+|++|||||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 492
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.23 E-value=6.8e-05 Score=70.34 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++++|++||||||++.-|+.++...+.+|.+...|+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 368999999999999999999988876555888887765
No 493
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.23 E-value=8e-06 Score=68.40 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++|+|++|||||||++.+.+-
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999885
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=1.6e-05 Score=75.65 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=52.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
.+++++||||+||||++..|++.+....| +|.+...|+ | .+...|++ ..+.+.+|+.....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt------~--RigA~EQL--r~~AeilGVpv~~~------- 319 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS------Y--RIGGHEQL--RIYGKILGVPVHAV------- 319 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc------c--chhHHHHH--HHHHHHhCCCeecc-------
Confidence 57999999999999999999998876655 576666554 1 12344433 33444555432110
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~ 109 (248)
......++ .+..+.+.+++++|++|-
T Consensus 320 -~~~~Dl~~--aL~~L~d~d~VLIDTaGr 345 (484)
T PRK06995 320 -KDAADLRL--ALSELRNKHIVLIDTIGM 345 (484)
T ss_pred -CCchhHHH--HHHhccCCCeEEeCCCCc
Confidence 01111122 222322668999999983
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=3.6e-05 Score=72.35 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-C-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-T-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
.+++++||+|+||||++..|+..+. . .+.+|.+...|+.. +.-.-.+..+.+.+++.-...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r----------~~a~eqL~~~a~~~~vp~~~~------- 284 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR----------IGAVEQLKTYAKIMGIPVEVV------- 284 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH----------HHHHHHHHHHHHHhCCceEcc-------
Confidence 3689999999999999999998775 2 34578888766521 000011223333444432110
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHH
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVD 124 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~ 124 (248)
... ..+..++..+.+.+++|+|+||. .|......+. ++++
T Consensus 285 --~~~-~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~-~ll~ 326 (424)
T PRK05703 285 --YDP-KELAKALEQLRDCDVILIDTAGRSQRDKRLIEELK-ALIE 326 (424)
T ss_pred --CCH-HhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHH-HHHh
Confidence 001 11222332222689999999995 7776665554 5555
No 496
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.23 E-value=4.6e-06 Score=74.24 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-C-ceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-R-RTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~-G~i~i~~~d~ 40 (248)
.+++++||+|+||||++..|+..+... + .+|.+...|+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 478999999999999999999988654 3 5888887664
No 497
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=2.8e-06 Score=69.11 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-C----CCCCCCCCcccChhhhhh-HHHHHHHhCC-----C
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-P----AAENFDYPVAMDIRELIS-LEDVMEELGL-----G 69 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~----~~~~~~y~~~~~i~e~i~-~~~~m~~~~L-----~ 69 (248)
|..-++|.||+|+||||+++-+.+.++..+ ..+.|.- + .....+| +|.+.-+ -+.++...+. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF----~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGF----KIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeee----EEEEccCCceEEEEEcCCCCcccc
Confidence 456789999999999999999998876542 2222210 0 0111222 1111111 0011111122 2
Q ss_pred CCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 70 PNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..+-.. +.+-.-...+|.+|+. .+|++|+||-+-+|+.+. .+. +.+++..+.+..++++
T Consensus 78 kY~V~v---~~le~i~~~al~rA~~---~aDvIIIDEIGpMElks~-~f~-~~ve~vl~~~kpliat 136 (179)
T COG1618 78 KYGVNV---EGLEEIAIPALRRALE---EADVIIIDEIGPMELKSK-KFR-EAVEEVLKSGKPLIAT 136 (179)
T ss_pred eEEeeH---HHHHHHhHHHHHHHhh---cCCEEEEecccchhhccH-HHH-HHHHHHhcCCCcEEEE
Confidence 221111 1111111245556654 479999999999999875 445 6677766667776655
No 498
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.21 E-value=6.4e-05 Score=69.94 Aligned_cols=79 Identities=24% Similarity=0.308 Sum_probs=42.8
Q ss_pred CEEEEeCCCccCHHhH-HHHHHHHHHHHHhCCCeEEEEEecccccc--cChHHHHHHHHHHHHHH--HhhCCCeeeeecc
Q 025795 100 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAM--VQLELPHVNILSK 174 (248)
Q Consensus 100 ~~lilDEPt~LD~~~~-~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~--~~~~~p~~~vlsk 174 (248)
.+++.|.|+..+..+. ..+..++++.+.+ . =+++|++|.... .++..-...++-.+... -..+.|.+-|+||
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r--a-dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNK 284 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLER--C-RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNK 284 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHh--C-CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeC
Confidence 4899999998664432 1233355555533 2 235566776532 23332222222211111 1136799999999
Q ss_pred cccccch
Q 025795 175 MDLVTNK 181 (248)
Q Consensus 175 ~dll~~~ 181 (248)
+|+..+.
T Consensus 285 iDl~~~~ 291 (390)
T PRK12298 285 IDLLDEE 291 (390)
T ss_pred CccCChH
Confidence 9997644
No 499
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.20 E-value=1.3e-05 Score=63.47 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.3
Q ss_pred EEcCCCCcHHHHHHHHHhC
Q 025795 7 VIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 7 iiGpnGSGKSTl~~~l~g~ 25 (248)
|+|++|+|||||++.+.|-
T Consensus 1 l~G~~~~GKssl~~~~~~~ 19 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA 19 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC
Confidence 5899999999999999874
No 500
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.19 E-value=7.1e-05 Score=60.21 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|||||||++.+.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5689999999999999999864
Done!