Query 025795
Match_columns 248
No_of_seqs 366 out of 3236
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 99.9 2.2E-27 7.5E-32 215.9 7.7 144 3-155 55-235 (366)
2 2onk_A Molybdate/tungstate ABC 99.9 5.3E-26 1.8E-30 196.2 13.3 139 4-151 26-194 (240)
3 2pcj_A ABC transporter, lipopr 99.9 1.1E-25 3.8E-30 192.0 15.1 129 3-136 31-196 (224)
4 3tif_A Uncharacterized ABC tra 99.9 6.6E-26 2.2E-30 194.9 13.7 129 3-136 32-202 (235)
5 2olj_A Amino acid ABC transpor 99.9 8.1E-26 2.8E-30 197.5 13.7 140 3-151 51-226 (263)
6 1vpl_A ABC transporter, ATP-bi 99.9 3.7E-26 1.3E-30 198.9 11.3 129 3-136 42-202 (256)
7 1b0u_A Histidine permease; ABC 99.9 6.5E-26 2.2E-30 197.9 12.5 141 3-152 33-221 (262)
8 3gfo_A Cobalt import ATP-bindi 99.9 7.5E-26 2.6E-30 198.9 12.9 141 3-152 35-212 (275)
9 3fvq_A Fe(3+) IONS import ATP- 99.9 1.1E-25 3.7E-30 204.4 13.6 141 3-152 31-207 (359)
10 3rlf_A Maltose/maltodextrin im 99.9 9.7E-26 3.3E-30 206.1 12.7 141 3-152 30-202 (381)
11 1ji0_A ABC transporter; ATP bi 99.9 6.9E-26 2.4E-30 195.3 10.5 140 3-151 33-206 (240)
12 1g6h_A High-affinity branched- 99.9 2E-25 6.9E-30 194.2 13.1 141 3-152 34-221 (257)
13 1sgw_A Putative ABC transporte 99.9 9.3E-26 3.2E-30 191.5 10.2 128 3-136 36-189 (214)
14 4g1u_C Hemin import ATP-bindin 99.9 3.4E-26 1.2E-30 200.2 7.5 143 3-152 38-216 (266)
15 1z47_A CYSA, putative ABC-tran 99.9 2.5E-25 8.4E-30 201.9 12.7 141 3-152 42-214 (355)
16 2yyz_A Sugar ABC transporter, 99.9 3.2E-25 1.1E-29 201.6 13.1 129 3-136 30-190 (359)
17 2it1_A 362AA long hypothetical 99.9 3.7E-25 1.3E-29 201.3 13.5 140 3-151 30-201 (362)
18 3d31_A Sulfate/molybdate ABC t 99.9 4.7E-25 1.6E-29 199.7 13.2 139 3-150 27-194 (348)
19 1v43_A Sugar-binding transport 99.9 4.7E-25 1.6E-29 201.3 11.5 140 3-151 38-209 (372)
20 1oxx_K GLCV, glucose, ABC tran 99.9 4.4E-25 1.5E-29 200.3 10.6 139 3-150 32-207 (353)
21 1g29_1 MALK, maltose transport 99.9 6.8E-25 2.3E-29 200.4 11.9 141 3-152 30-208 (372)
22 2qi9_C Vitamin B12 import ATP- 99.9 1.4E-24 4.8E-29 188.2 12.2 138 3-150 27-199 (249)
23 2yz2_A Putative ABC transporte 99.9 2E-24 6.8E-29 188.8 13.2 139 3-150 34-204 (266)
24 2ihy_A ABC transporter, ATP-bi 99.9 7.2E-25 2.5E-29 193.0 9.7 129 3-136 48-219 (279)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 4.4E-24 1.5E-28 185.0 12.4 129 3-136 30-199 (250)
26 2nq2_C Hypothetical ABC transp 99.9 1.1E-23 3.9E-28 182.8 13.1 139 3-150 32-195 (253)
27 2ff7_A Alpha-hemolysin translo 99.9 8.4E-24 2.9E-28 183.0 11.9 130 3-136 36-200 (247)
28 2zu0_C Probable ATP-dependent 99.9 7.3E-24 2.5E-28 185.4 10.7 130 3-136 47-220 (267)
29 2ixe_A Antigen peptide transpo 99.9 3.7E-23 1.2E-27 181.3 12.6 129 3-136 46-213 (271)
30 1mv5_A LMRA, multidrug resista 99.9 2.7E-23 9.3E-28 179.2 11.3 130 3-136 29-194 (243)
31 2pjz_A Hypothetical protein ST 99.9 4.9E-23 1.7E-27 179.9 12.3 124 4-136 32-181 (263)
32 2ghi_A Transport protein; mult 99.9 2.6E-22 8.8E-27 174.9 12.1 129 3-136 47-210 (260)
33 3nh6_A ATP-binding cassette SU 99.9 1.7E-22 5.8E-27 180.0 9.8 130 3-136 81-245 (306)
34 3ozx_A RNAse L inhibitor; ATP 99.9 2.9E-22 9.8E-27 191.0 9.8 143 3-154 295-456 (538)
35 2cbz_A Multidrug resistance-as 99.9 1.8E-22 6E-27 173.7 7.3 129 3-136 32-185 (237)
36 2pze_A Cystic fibrosis transme 99.9 5.7E-22 2E-26 169.6 9.3 129 3-136 35-186 (229)
37 3gd7_A Fusion complex of cysti 99.9 8E-22 2.7E-26 181.0 8.7 129 3-136 48-210 (390)
38 3bk7_A ABC transporter ATP-bin 99.8 3.1E-21 1.1E-25 186.2 11.5 141 3-153 383-541 (607)
39 3b60_A Lipid A export ATP-bind 99.8 3.7E-21 1.3E-25 184.8 11.5 130 3-136 370-535 (582)
40 1yqt_A RNAse L inhibitor; ATP- 99.8 2.9E-21 9.8E-26 184.1 10.0 129 3-136 48-214 (538)
41 3ozx_A RNAse L inhibitor; ATP 99.8 2.4E-21 8.2E-26 184.6 9.1 128 3-136 26-193 (538)
42 3b5x_A Lipid A export ATP-bind 99.8 4.4E-21 1.5E-25 184.3 10.9 130 3-136 370-535 (582)
43 3bk7_A ABC transporter ATP-bin 99.8 2.8E-21 9.5E-26 186.5 8.9 129 3-136 118-284 (607)
44 1yqt_A RNAse L inhibitor; ATP- 99.8 3E-21 1E-25 184.0 8.6 142 3-154 313-472 (538)
45 2yl4_A ATP-binding cassette SU 99.8 1.4E-20 4.8E-25 181.2 12.4 130 3-136 371-538 (595)
46 2bbs_A Cystic fibrosis transme 99.8 3.8E-21 1.3E-25 170.1 6.4 129 3-136 65-215 (290)
47 4a82_A Cystic fibrosis transme 99.8 1.7E-20 6E-25 180.0 11.5 130 3-136 368-532 (578)
48 3qf4_B Uncharacterized ABC tra 99.8 3.2E-21 1.1E-25 185.9 6.1 135 3-145 382-551 (598)
49 3j16_B RLI1P; ribosome recycli 99.8 1.5E-20 5.2E-25 181.3 9.9 139 3-155 379-539 (608)
50 3qf4_A ABC transporter, ATP-bi 99.8 4E-20 1.4E-24 177.9 12.1 130 3-136 370-534 (587)
51 3j16_B RLI1P; ribosome recycli 99.8 1.1E-20 3.7E-25 182.3 6.9 129 3-136 104-277 (608)
52 1yrb_A ATP(GTP)binding protein 99.8 8.2E-18 2.8E-22 144.5 17.0 233 2-244 14-253 (262)
53 3ux8_A Excinuclease ABC, A sub 99.7 6.9E-18 2.4E-22 164.4 13.2 130 3-136 45-260 (670)
54 4f4c_A Multidrug resistance pr 99.7 5.7E-18 2E-22 175.8 12.9 127 3-139 445-613 (1321)
55 4f4c_A Multidrug resistance pr 99.7 3.9E-18 1.3E-22 177.0 10.1 130 3-136 1106-1272(1321)
56 3g5u_A MCG1178, multidrug resi 99.7 5E-18 1.7E-22 175.8 10.1 130 3-136 417-581 (1284)
57 3g5u_A MCG1178, multidrug resi 99.7 8.6E-18 2.9E-22 174.0 10.7 130 3-136 1060-1226(1284)
58 3b85_A Phosphate starvation-in 99.7 1.4E-18 4.7E-23 146.6 1.7 125 3-137 23-156 (208)
59 2iw3_A Elongation factor 3A; a 99.7 1.2E-17 3.9E-22 167.7 7.5 72 59-136 880-954 (986)
60 2iw3_A Elongation factor 3A; a 99.7 1.1E-16 3.8E-21 160.7 11.4 122 3-136 462-601 (986)
61 4gp7_A Metallophosphoesterase; 99.7 8.2E-18 2.8E-22 137.0 2.2 50 84-136 89-155 (171)
62 3ux8_A Excinuclease ABC, A sub 99.7 3.3E-16 1.1E-20 152.6 12.5 74 59-136 523-602 (670)
63 1tq4_A IIGP1, interferon-induc 99.6 1.5E-17 5.2E-22 153.5 1.1 146 3-156 70-249 (413)
64 2npi_A Protein CLP1; CLP1-PCF1 99.6 5.6E-17 1.9E-21 151.8 2.2 120 4-136 140-294 (460)
65 1ye8_A Protein THEP1, hypothet 99.6 3.5E-16 1.2E-20 128.6 4.9 125 4-145 2-144 (178)
66 3b9q_A Chloroplast SRP recepto 99.6 2.4E-15 8.2E-20 133.5 9.9 148 2-171 100-279 (302)
67 2og2_A Putative signal recogni 99.6 1.2E-14 4E-19 132.0 10.9 148 2-171 157-336 (359)
68 2vf7_A UVRA2, excinuclease ABC 99.5 6.4E-15 2.2E-19 146.3 8.8 73 59-136 710-789 (842)
69 3szr_A Interferon-induced GTP- 99.5 3E-15 1E-19 144.5 4.0 156 5-180 48-229 (608)
70 2eyu_A Twitching motility prot 99.5 3.4E-14 1.2E-18 123.5 10.2 116 3-156 26-144 (261)
71 2pt7_A CAG-ALFA; ATPase, prote 99.5 4.9E-14 1.7E-18 126.5 11.3 115 3-156 172-286 (330)
72 4aby_A DNA repair protein RECN 99.5 1.6E-14 5.5E-19 132.2 8.2 52 81-136 296-352 (415)
73 3pih_A Uvrabc system protein A 99.5 7.8E-14 2.7E-18 139.6 13.4 74 59-136 785-864 (916)
74 2r6f_A Excinuclease ABC subuni 99.5 6.4E-14 2.2E-18 140.1 12.3 73 59-136 825-904 (972)
75 3sop_A Neuronal-specific septi 99.5 3.2E-15 1.1E-19 130.7 1.3 39 2-40 2-40 (270)
76 2ygr_A Uvrabc system protein A 99.5 1.6E-13 5.6E-18 137.5 11.3 72 60-136 844-922 (993)
77 2ehv_A Hypothetical protein PH 99.5 1.2E-14 4.2E-19 123.2 2.4 123 3-136 31-178 (251)
78 1e69_A Chromosome segregation 99.4 6.6E-13 2.3E-17 118.3 11.9 56 79-136 218-278 (322)
79 1znw_A Guanylate kinase, GMP k 99.4 3.7E-15 1.3E-19 124.5 -3.4 58 92-156 137-200 (207)
80 4a74_A DNA repair and recombin 99.4 5.3E-13 1.8E-17 111.7 9.2 37 3-39 26-69 (231)
81 1rj9_A FTSY, signal recognitio 99.4 8.6E-13 2.9E-17 117.2 9.5 151 3-172 103-281 (304)
82 2kjq_A DNAA-related protein; s 99.4 1.5E-12 5.2E-17 103.8 8.8 97 4-152 38-137 (149)
83 3jvv_A Twitching mobility prot 99.4 1.2E-12 4.1E-17 118.7 9.0 102 4-136 125-227 (356)
84 3aez_A Pantothenate kinase; tr 99.3 6.7E-14 2.3E-18 124.7 -0.9 106 2-112 90-209 (312)
85 3thx_A DNA mismatch repair pro 99.3 1.1E-12 3.7E-17 131.7 7.6 107 3-136 663-781 (934)
86 3qf7_A RAD50; ABC-ATPase, ATPa 99.3 4.4E-12 1.5E-16 115.2 10.7 54 80-136 279-341 (365)
87 1tf7_A KAIC; homohexamer, hexa 99.3 1.9E-12 6.6E-17 122.7 6.5 121 3-136 282-413 (525)
88 2w0m_A SSO2452; RECA, SSPF, un 99.3 8.4E-12 2.9E-16 104.1 8.8 117 3-136 24-164 (235)
89 2o8b_B DNA mismatch repair pro 99.3 9.4E-13 3.2E-17 133.4 3.1 113 3-136 790-908 (1022)
90 1cr0_A DNA primase/helicase; R 99.3 4.2E-12 1.4E-16 111.2 6.5 127 3-136 36-193 (296)
91 3thx_B DNA mismatch repair pro 99.3 2.6E-12 8.9E-17 128.7 5.3 113 3-136 674-792 (918)
92 3ec2_A DNA replication protein 99.3 1.2E-11 4E-16 100.5 7.9 98 3-136 39-139 (180)
93 1tf7_A KAIC; homohexamer, hexa 99.2 1.4E-12 4.7E-17 123.7 2.3 126 3-136 40-181 (525)
94 3e70_C DPA, signal recognition 99.2 2E-11 6.8E-16 109.4 9.1 150 2-172 129-302 (328)
95 2ewv_A Twitching motility prot 99.2 2.8E-11 9.4E-16 110.2 9.3 117 3-156 137-255 (372)
96 3qkt_A DNA double-strand break 99.2 8.6E-11 3E-15 105.4 11.7 47 87-136 263-310 (339)
97 1ewq_A DNA mismatch repair pro 99.2 7.4E-12 2.5E-16 123.5 4.9 105 3-136 577-694 (765)
98 1nlf_A Regulatory protein REPA 99.2 1.1E-11 3.6E-16 108.0 5.2 126 3-137 31-178 (279)
99 2i3b_A HCR-ntpase, human cance 99.2 5.2E-13 1.8E-17 110.7 -3.3 35 4-40 3-37 (189)
100 1pzn_A RAD51, DNA repair and r 99.1 1.6E-10 5.5E-15 104.3 10.1 37 3-39 132-175 (349)
101 1wb9_A DNA mismatch repair pro 99.1 3.9E-11 1.3E-15 118.9 5.3 109 3-136 608-726 (800)
102 3asz_A Uridine kinase; cytidin 99.1 1.5E-12 5.2E-17 108.2 -4.4 121 2-133 6-154 (211)
103 1z6g_A Guanylate kinase; struc 99.1 4.1E-12 1.4E-16 107.2 -1.9 111 3-126 24-173 (218)
104 2cvh_A DNA repair and recombin 99.1 7.4E-10 2.5E-14 91.8 11.0 116 3-137 21-153 (220)
105 1n0w_A DNA repair protein RAD5 99.0 1.6E-09 5.6E-14 91.0 12.0 37 3-39 25-68 (243)
106 1s96_A Guanylate kinase, GMP k 99.0 4.8E-11 1.6E-15 101.0 1.8 114 3-136 17-136 (219)
107 1vma_A Cell division protein F 99.0 7.1E-10 2.4E-14 98.4 8.4 91 2-109 104-197 (306)
108 1sxj_E Activator 1 40 kDa subu 99.0 8.1E-10 2.8E-14 98.4 8.7 116 5-136 39-170 (354)
109 1ls1_A Signal recognition part 99.0 7.3E-10 2.5E-14 97.7 8.3 108 2-126 98-209 (295)
110 1lw7_A Transcriptional regulat 99.0 1.6E-10 5.3E-15 104.6 3.9 128 3-136 171-325 (365)
111 2bbw_A Adenylate kinase 4, AK4 99.0 4.5E-11 1.6E-15 102.0 -0.1 37 3-39 28-67 (246)
112 2dpy_A FLII, flagellum-specifi 99.0 2.6E-10 8.9E-15 105.9 4.6 143 3-159 158-330 (438)
113 2obl_A ESCN; ATPase, hydrolase 99.0 1E-09 3.6E-14 99.0 7.5 145 3-160 72-242 (347)
114 2qag_C Septin-7; cell cycle, c 98.9 6.5E-10 2.2E-14 102.7 5.6 125 3-141 32-179 (418)
115 1htw_A HI0065; nucleotide-bind 98.9 3.7E-10 1.3E-14 90.9 2.6 37 3-40 34-70 (158)
116 2yhs_A FTSY, cell division pro 98.9 3.4E-08 1.2E-12 92.7 15.2 39 2-40 293-331 (503)
117 2v9p_A Replication protein E1; 98.9 1.1E-10 3.7E-15 103.6 -1.9 98 3-119 127-233 (305)
118 2qnr_A Septin-2, protein NEDD5 98.9 1.2E-08 4E-13 90.2 11.0 36 3-39 19-55 (301)
119 3lda_A DNA repair protein RAD5 98.9 8E-09 2.7E-13 94.9 10.0 119 3-137 179-325 (400)
120 1pui_A ENGB, probable GTP-bind 98.9 1.1E-09 3.8E-14 90.1 3.9 125 2-130 26-200 (210)
121 2gza_A Type IV secretion syste 98.8 1.7E-08 5.8E-13 91.3 11.5 124 3-157 176-299 (361)
122 2px0_A Flagellar biosynthesis 98.8 1.3E-08 4.5E-13 89.7 9.0 87 3-109 106-193 (296)
123 2p67_A LAO/AO transport system 98.8 2.6E-08 8.8E-13 89.3 10.6 40 3-42 57-96 (341)
124 2qag_B Septin-6, protein NEDD5 98.8 5.2E-09 1.8E-13 96.7 6.1 47 87-136 167-215 (427)
125 2www_A Methylmalonic aciduria 98.7 1.7E-08 5.8E-13 90.9 7.8 41 3-43 75-115 (349)
126 3kl4_A SRP54, signal recogniti 98.7 6.8E-08 2.3E-12 89.5 11.6 152 2-180 97-253 (433)
127 2jeo_A Uridine-cytidine kinase 98.7 1.7E-09 5.8E-14 92.3 0.6 25 2-26 25-49 (245)
128 3euj_A Chromosome partition pr 98.7 4.3E-09 1.5E-13 98.7 2.2 38 4-41 31-68 (483)
129 3lxx_A GTPase IMAP family memb 98.7 4E-07 1.4E-11 76.8 14.1 27 3-29 30-56 (239)
130 2dr3_A UPF0273 protein PH0284; 98.7 3.9E-08 1.3E-12 82.6 7.7 39 98-136 128-169 (247)
131 1sq5_A Pantothenate kinase; P- 98.7 1.9E-08 6.3E-13 89.0 6.0 37 3-39 81-122 (308)
132 3pqc_A Probable GTP-binding pr 98.7 1.8E-06 6.3E-11 69.2 16.9 117 98-244 67-190 (195)
133 1oix_A RAS-related protein RAB 98.6 4E-08 1.4E-12 80.1 6.8 36 3-38 30-76 (191)
134 4dhe_A Probable GTP-binding pr 98.6 3.8E-06 1.3E-10 69.2 18.2 23 3-25 30-52 (223)
135 1zp6_A Hypothetical protein AT 98.6 3.1E-08 1E-12 80.4 4.9 35 3-39 10-44 (191)
136 2zr9_A Protein RECA, recombina 98.6 1.1E-07 3.8E-12 85.7 8.7 116 3-137 62-195 (349)
137 1j8m_F SRP54, signal recogniti 98.6 2.8E-07 9.5E-12 81.3 10.8 39 3-41 99-137 (297)
138 2bdt_A BH3686; alpha-beta prot 98.6 3E-08 1E-12 80.7 4.2 37 1-40 1-37 (189)
139 2qm8_A GTPase/ATPase; G protei 98.6 2.1E-08 7.1E-13 90.0 3.0 40 3-42 56-95 (337)
140 3k53_A Ferrous iron transport 98.5 2.7E-07 9.1E-12 79.7 9.5 24 3-26 4-27 (271)
141 3a00_A Guanylate kinase, GMP k 98.5 2.4E-08 8.3E-13 81.5 2.6 29 4-32 3-31 (186)
142 3t34_A Dynamin-related protein 98.5 4.7E-07 1.6E-11 81.4 11.1 30 4-33 36-67 (360)
143 2f1r_A Molybdopterin-guanine d 98.5 1E-08 3.5E-13 83.5 0.1 39 1-39 1-42 (171)
144 3c8u_A Fructokinase; YP_612366 98.5 2.4E-08 8.3E-13 82.9 2.2 39 2-40 22-63 (208)
145 3p32_A Probable GTPase RV1496/ 98.5 9.7E-07 3.3E-11 79.4 12.9 42 2-43 79-120 (355)
146 1qhl_A Protein (cell division 98.5 3.9E-09 1.3E-13 89.8 -3.0 36 5-40 30-65 (227)
147 1svi_A GTP-binding protein YSX 98.5 9.3E-06 3.2E-10 65.3 17.4 23 3-25 24-46 (195)
148 3pih_A Uvrabc system protein A 98.5 1.8E-07 6.2E-12 93.8 8.4 111 21-136 387-522 (916)
149 1f2t_B RAD50 ABC-ATPase; DNA d 98.5 2.1E-07 7.2E-12 73.9 7.2 55 79-136 56-119 (148)
150 3tqc_A Pantothenate kinase; bi 98.5 6.1E-08 2.1E-12 86.5 4.2 39 2-40 92-132 (321)
151 1p9r_A General secretion pathw 98.5 6.1E-08 2.1E-12 89.4 4.0 38 3-40 168-205 (418)
152 1u0l_A Probable GTPase ENGC; p 98.5 6.7E-08 2.3E-12 85.1 3.9 38 3-40 170-210 (301)
153 1zu4_A FTSY; GTPase, signal re 98.5 1.6E-07 5.6E-12 83.6 6.1 39 2-40 105-143 (320)
154 1fnn_A CDC6P, cell division co 98.5 5.3E-07 1.8E-11 80.6 9.4 116 4-136 46-165 (389)
155 1rz3_A Hypothetical protein rb 98.5 6.2E-08 2.1E-12 80.0 3.0 39 2-40 22-60 (201)
156 2dyk_A GTP-binding protein; GT 98.4 2.2E-06 7.7E-11 66.5 11.5 23 3-25 2-24 (161)
157 3dm5_A SRP54, signal recogniti 98.4 9E-06 3.1E-10 75.4 17.3 39 2-40 100-138 (443)
158 1lvg_A Guanylate kinase, GMP k 98.4 6.9E-08 2.4E-12 79.8 2.6 25 3-27 5-29 (198)
159 2ffh_A Protein (FFH); SRP54, s 98.4 4.5E-06 1.5E-10 77.1 15.0 39 2-40 98-136 (425)
160 1udx_A The GTP-binding protein 98.4 1.1E-07 3.7E-12 87.7 3.6 137 4-155 159-320 (416)
161 3tr0_A Guanylate kinase, GMP k 98.4 1.2E-07 4.2E-12 77.6 3.6 32 3-38 8-39 (205)
162 3i8s_A Ferrous iron transport 98.4 8.9E-07 3E-11 76.8 8.9 24 2-25 3-26 (274)
163 3hr8_A Protein RECA; alpha and 98.4 1.1E-06 3.8E-11 79.4 9.7 89 3-109 62-150 (356)
164 2oap_1 GSPE-2, type II secreti 98.4 1.9E-07 6.4E-12 88.3 4.4 37 3-39 261-297 (511)
165 1odf_A YGR205W, hypothetical 3 98.4 2.9E-08 1E-12 87.3 -1.1 28 2-29 31-58 (290)
166 1nij_A Hypothetical protein YJ 98.3 1.4E-07 4.7E-12 83.8 2.5 39 3-41 5-51 (318)
167 2ged_A SR-beta, signal recogni 98.3 3.1E-06 1.1E-10 68.1 10.3 24 3-26 49-72 (193)
168 2yv5_A YJEQ protein; hydrolase 98.3 2.7E-07 9.2E-12 81.4 4.1 37 3-40 166-205 (302)
169 3iev_A GTP-binding protein ERA 98.3 2.1E-06 7.3E-11 75.6 9.7 23 3-25 11-33 (308)
170 1kgd_A CASK, peripheral plasma 98.3 2E-07 6.8E-12 75.6 2.7 39 2-40 5-44 (180)
171 4eun_A Thermoresistant glucoki 98.3 2.7E-07 9.2E-12 75.9 3.5 34 3-40 30-63 (200)
172 3lnc_A Guanylate kinase, GMP k 98.3 1.7E-07 5.9E-12 78.8 2.3 26 3-28 28-54 (231)
173 2ce2_X GTPase HRAS; signaling 98.3 3.3E-06 1.1E-10 65.4 9.4 25 1-25 1-26 (166)
174 2rcn_A Probable GTPase ENGC; Y 98.3 3.5E-07 1.2E-11 82.7 4.2 37 3-39 216-254 (358)
175 1nrj_B SR-beta, signal recogni 98.3 4.9E-06 1.7E-10 68.5 10.8 24 3-26 13-36 (218)
176 1ega_A Protein (GTP-binding pr 98.3 6.1E-06 2.1E-10 72.5 11.9 23 3-25 9-31 (301)
177 1c1y_A RAS-related protein RAP 98.3 1.1E-05 3.8E-10 62.7 12.2 23 3-25 4-26 (167)
178 2a9k_A RAS-related protein RAL 98.3 1.2E-05 4.1E-10 63.8 12.2 23 3-25 19-41 (187)
179 1kao_A RAP2A; GTP-binding prot 98.3 1.1E-05 3.6E-10 62.6 11.7 23 3-25 4-26 (167)
180 2j41_A Guanylate kinase; GMP, 98.3 4.4E-07 1.5E-11 74.2 3.7 30 2-31 6-35 (207)
181 1kag_A SKI, shikimate kinase I 98.3 3.2E-07 1.1E-11 73.2 2.8 27 1-27 3-29 (173)
182 4e22_A Cytidylate kinase; P-lo 98.3 9.2E-08 3.2E-12 82.0 -0.5 32 3-34 28-62 (252)
183 3b1v_A Ferrous iron uptake tra 98.2 1.5E-05 5.1E-10 69.2 13.1 24 2-25 3-26 (272)
184 2vp4_A Deoxynucleoside kinase; 98.2 4.6E-07 1.6E-11 76.4 3.3 33 3-39 21-53 (230)
185 3uie_A Adenylyl-sulfate kinase 98.2 2.8E-07 9.6E-12 75.8 2.0 38 2-40 25-64 (200)
186 1ky3_A GTP-binding protein YPT 98.2 4.4E-06 1.5E-10 66.0 8.9 23 3-25 9-31 (182)
187 1jjv_A Dephospho-COA kinase; P 98.2 6E-07 2E-11 73.9 3.8 24 1-24 1-24 (206)
188 2v3c_C SRP54, signal recogniti 98.2 1.5E-06 5.2E-11 80.4 6.9 152 3-180 100-253 (432)
189 1t9h_A YLOQ, probable GTPase E 98.2 2E-07 6.8E-12 82.7 0.9 33 3-35 174-206 (307)
190 1u8z_A RAS-related protein RAL 98.2 1.3E-05 4.5E-10 62.1 11.4 23 3-25 5-27 (168)
191 1z2a_A RAS-related protein RAB 98.2 1.8E-06 6.3E-11 67.4 6.0 23 3-25 6-28 (168)
192 3iby_A Ferrous iron transport 98.2 1.3E-05 4.4E-10 68.9 11.7 22 4-25 3-24 (256)
193 1wms_A RAB-9, RAB9, RAS-relate 98.2 1E-05 3.4E-10 63.8 10.2 23 3-25 8-30 (177)
194 2z4s_A Chromosomal replication 98.2 3.9E-06 1.3E-10 77.6 8.8 98 4-136 132-233 (440)
195 2r6a_A DNAB helicase, replicat 98.2 2.8E-06 9.6E-11 78.8 7.8 132 3-137 204-361 (454)
196 2bov_A RAla, RAS-related prote 98.2 1.8E-05 6.1E-10 64.0 11.7 23 3-25 15-37 (206)
197 2vf7_A UVRA2, excinuclease ABC 98.2 4.5E-06 1.5E-10 83.1 9.5 74 62-140 362-442 (842)
198 2r6f_A Excinuclease ABC subuni 98.2 4.5E-06 1.5E-10 83.8 9.5 73 62-139 487-566 (972)
199 3a1s_A Iron(II) transport prot 98.2 5.1E-06 1.7E-10 71.4 8.6 23 3-25 6-28 (258)
200 3kta_A Chromosome segregation 98.2 8.8E-07 3E-11 71.3 3.3 28 4-31 28-55 (182)
201 2fn4_A P23, RAS-related protei 98.2 1.4E-05 4.7E-10 63.0 10.1 23 3-25 10-32 (181)
202 1knq_A Gluconate kinase; ALFA/ 98.2 1.1E-06 3.8E-11 70.3 3.7 33 3-39 9-41 (175)
203 3tau_A Guanylate kinase, GMP k 98.1 1.2E-06 4E-11 72.8 3.7 37 3-39 9-46 (208)
204 2ygr_A Uvrabc system protein A 98.1 4.7E-06 1.6E-10 83.9 8.5 73 62-139 504-583 (993)
205 1l8q_A Chromosomal replication 98.1 9.9E-06 3.4E-10 71.2 9.8 98 4-137 39-138 (324)
206 3t1o_A Gliding protein MGLA; G 98.1 9.4E-05 3.2E-09 59.0 14.8 25 3-27 15-39 (198)
207 3con_A GTPase NRAS; structural 98.1 4.9E-06 1.7E-10 66.7 7.1 23 3-25 22-44 (190)
208 2cxx_A Probable GTP-binding pr 98.1 2.8E-05 9.6E-10 61.9 11.3 23 3-25 2-24 (190)
209 1cke_A CK, MSSA, protein (cyti 98.1 3.8E-07 1.3E-11 75.9 -0.1 34 2-35 5-41 (227)
210 3kta_B Chromosome segregation 98.1 3.8E-06 1.3E-10 68.3 5.9 57 78-136 62-123 (173)
211 3bos_A Putative DNA replicatio 98.1 6.2E-06 2.1E-10 68.3 7.3 34 3-36 53-86 (242)
212 3t5d_A Septin-7; GTP-binding p 98.1 3.6E-05 1.2E-09 66.3 12.4 23 3-25 9-31 (274)
213 2f9l_A RAB11B, member RAS onco 98.1 1.6E-06 5.4E-11 70.7 3.2 24 3-26 6-29 (199)
214 3clv_A RAB5 protein, putative; 98.1 2.2E-05 7.4E-10 62.9 9.8 24 3-26 8-31 (208)
215 2qu8_A Putative nucleolar GTP- 98.1 4.6E-05 1.6E-09 63.4 12.2 23 3-25 30-52 (228)
216 4gzl_A RAS-related C3 botulinu 98.1 6.3E-05 2.2E-09 61.4 12.8 67 164-244 133-201 (204)
217 2x8a_A Nuclear valosin-contain 98.1 2.5E-06 8.6E-11 74.0 4.4 35 4-40 46-80 (274)
218 3kkq_A RAS-related protein M-R 98.0 3.5E-05 1.2E-09 61.2 10.5 23 3-25 19-41 (183)
219 3sjy_A Translation initiation 98.0 6.2E-05 2.1E-09 68.6 13.3 26 3-28 9-34 (403)
220 1wb1_A Translation elongation 98.0 5.9E-05 2E-09 70.6 13.4 23 3-25 20-42 (482)
221 3def_A T7I23.11 protein; chlor 98.0 8.1E-06 2.8E-10 70.0 6.5 23 3-25 37-59 (262)
222 2w58_A DNAI, primosome compone 98.0 1.3E-05 4.6E-10 65.3 7.4 33 3-35 55-87 (202)
223 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 4.1E-06 1.4E-10 76.6 4.7 36 2-37 20-67 (392)
224 2j37_W Signal recognition part 98.0 5.4E-05 1.9E-09 71.3 12.3 38 3-40 102-139 (504)
225 3lxw_A GTPase IMAP family memb 98.0 5.6E-05 1.9E-09 64.3 11.3 23 3-25 22-44 (247)
226 2erx_A GTP-binding protein DI- 98.0 6.2E-05 2.1E-09 58.6 10.5 22 3-24 4-25 (172)
227 3k1j_A LON protease, ATP-depen 98.0 3.2E-05 1.1E-09 74.2 10.5 35 4-38 62-97 (604)
228 1vg8_A RAS-related protein RAB 98.0 5.1E-06 1.7E-10 67.5 4.2 23 3-25 9-31 (207)
229 1jwy_B Dynamin A GTPase domain 98.0 0.00013 4.5E-09 63.5 13.5 24 3-26 25-48 (315)
230 2qt1_A Nicotinamide riboside k 97.9 7.3E-06 2.5E-10 67.4 4.8 26 2-27 21-46 (207)
231 2x2e_A Dynamin-1; nitration, h 97.9 0.00017 5.9E-09 64.4 14.2 23 4-26 33-55 (353)
232 2ius_A DNA translocase FTSK; n 97.9 3.1E-05 1E-09 73.1 9.6 38 5-42 170-209 (512)
233 2if2_A Dephospho-COA kinase; a 97.9 4.3E-06 1.5E-10 68.5 3.3 22 3-24 2-23 (204)
234 3ney_A 55 kDa erythrocyte memb 97.9 4E-06 1.4E-10 69.6 3.2 25 3-27 20-44 (197)
235 3cr8_A Sulfate adenylyltranfer 97.9 2.9E-06 1E-10 80.8 2.5 35 3-37 370-406 (552)
236 1np6_A Molybdopterin-guanine d 97.9 4.2E-06 1.4E-10 68.1 3.0 40 1-40 5-44 (174)
237 2ce7_A Cell division protein F 97.9 4.2E-05 1.4E-09 71.6 10.1 24 3-26 50-73 (476)
238 2aka_B Dynamin-1; fusion prote 97.9 0.00025 8.7E-09 61.0 14.5 24 3-26 27-50 (299)
239 1wf3_A GTP-binding protein; GT 97.9 0.00014 4.8E-09 63.8 12.8 22 4-25 9-30 (301)
240 1ly1_A Polynucleotide kinase; 97.9 6.6E-06 2.2E-10 65.5 3.8 24 1-24 1-24 (181)
241 2yvu_A Probable adenylyl-sulfa 97.9 4.4E-06 1.5E-10 67.6 2.6 36 2-37 13-48 (186)
242 1lnz_A SPO0B-associated GTP-bi 97.9 9.9E-06 3.4E-10 72.7 4.9 79 99-180 206-289 (342)
243 1ixz_A ATP-dependent metallopr 97.9 7.3E-06 2.5E-10 69.5 3.8 33 4-38 51-83 (254)
244 4fcw_A Chaperone protein CLPB; 97.9 2.7E-05 9.1E-10 67.6 7.2 98 3-125 48-145 (311)
245 3t61_A Gluconokinase; PSI-biol 97.8 6.2E-06 2.1E-10 67.6 2.8 25 2-26 18-42 (202)
246 3r7w_A Gtpase1, GTP-binding pr 97.8 9.3E-05 3.2E-09 65.0 10.5 24 3-26 4-27 (307)
247 3j2k_7 ERF3, eukaryotic polype 97.8 0.00051 1.7E-08 63.4 15.9 23 3-25 18-40 (439)
248 2pez_A Bifunctional 3'-phospho 97.8 6.9E-06 2.4E-10 66.0 2.8 35 2-37 5-41 (179)
249 1u94_A RECA protein, recombina 97.8 3.7E-05 1.3E-09 69.3 7.9 36 3-38 64-99 (356)
250 1iy2_A ATP-dependent metallopr 97.8 1E-05 3.4E-10 69.8 3.9 33 4-38 75-107 (278)
251 1h65_A Chloroplast outer envel 97.8 4E-05 1.4E-09 65.8 7.0 23 3-25 40-62 (270)
252 2gf0_A GTP-binding protein DI- 97.8 0.00014 4.8E-09 58.3 9.9 22 3-24 9-30 (199)
253 1v5w_A DMC1, meiotic recombina 97.8 0.00016 5.5E-09 64.6 11.1 23 3-25 123-145 (343)
254 1m7g_A Adenylylsulfate kinase; 97.8 6E-06 2.1E-10 68.3 1.6 36 2-37 25-62 (211)
255 1in4_A RUVB, holliday junction 97.8 2.1E-06 7.3E-11 76.3 -1.3 34 4-37 53-90 (334)
256 1xp8_A RECA protein, recombina 97.8 9.7E-05 3.3E-09 66.8 9.5 117 3-137 75-208 (366)
257 2xxa_A Signal recognition part 97.8 0.00027 9.2E-09 65.3 12.6 40 2-41 100-140 (433)
258 2qby_A CDC6 homolog 1, cell di 97.7 6.1E-06 2.1E-10 73.2 1.1 26 4-29 47-72 (386)
259 2c78_A Elongation factor TU-A; 97.7 0.0016 5.6E-08 59.1 17.2 23 3-25 12-34 (405)
260 2hjg_A GTP-binding protein ENG 97.7 0.00015 5.3E-09 66.6 10.3 23 3-25 176-198 (436)
261 2r8r_A Sensor protein; KDPD, P 97.7 4.6E-05 1.6E-09 64.6 6.0 114 2-136 6-123 (228)
262 1qhx_A CPT, protein (chloramph 97.7 1.7E-05 5.8E-10 63.2 3.2 27 1-27 2-28 (178)
263 2v1u_A Cell division control p 97.7 5.2E-05 1.8E-09 67.2 6.6 25 4-28 46-70 (387)
264 1w1w_A Structural maintenance 97.7 1.5E-05 5.2E-10 73.2 3.1 55 81-136 334-393 (430)
265 2z43_A DNA repair and recombin 97.7 0.00012 4.1E-09 64.7 8.9 24 3-26 108-131 (324)
266 4eaq_A DTMP kinase, thymidylat 97.7 2.6E-05 9E-10 65.8 4.2 34 2-36 26-59 (229)
267 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.3E-05 7.7E-10 61.8 3.4 21 4-24 25-45 (149)
268 3n70_A Transport activator; si 97.7 0.00017 5.8E-09 56.0 8.4 30 4-33 26-55 (145)
269 1xjc_A MOBB protein homolog; s 97.7 1.9E-05 6.4E-10 64.0 2.8 40 2-41 4-43 (169)
270 3kb2_A SPBC2 prophage-derived 97.7 2.2E-05 7.5E-10 61.9 3.2 24 3-26 2-25 (173)
271 4ad8_A DNA repair protein RECN 97.7 3.4E-05 1.2E-09 72.6 5.0 51 82-136 399-454 (517)
272 2elf_A Protein translation elo 97.6 6E-05 2E-09 68.2 6.2 20 4-23 23-42 (370)
273 3p26_A Elongation factor 1 alp 97.6 0.00025 8.6E-09 66.1 10.7 23 3-25 34-56 (483)
274 3lw7_A Adenylate kinase relate 97.6 2.4E-05 8.2E-10 61.4 3.1 20 3-22 2-21 (179)
275 4dcu_A GTP-binding protein ENG 97.6 0.00013 4.6E-09 67.4 8.6 23 2-24 23-45 (456)
276 2hjg_A GTP-binding protein ENG 97.6 0.00011 3.6E-09 67.7 7.5 23 2-24 3-25 (436)
277 3h4m_A Proteasome-activating n 97.6 0.00054 1.8E-08 58.6 11.5 24 3-26 52-75 (285)
278 2o5v_A DNA replication and rep 97.6 4.2E-05 1.4E-09 69.1 4.6 44 80-126 265-320 (359)
279 3cm0_A Adenylate kinase; ATP-b 97.6 3.3E-05 1.1E-09 61.9 3.6 25 2-26 4-28 (186)
280 1via_A Shikimate kinase; struc 97.6 2.4E-05 8.3E-10 62.5 2.7 24 3-26 5-28 (175)
281 2j69_A Bacterial dynamin-like 97.6 0.00029 1E-08 68.8 10.9 25 2-26 69-93 (695)
282 1qf9_A UMP/CMP kinase, protein 97.6 3.6E-05 1.2E-09 61.7 3.7 26 1-26 5-30 (194)
283 2e87_A Hypothetical protein PH 97.6 3.1E-05 1E-09 69.5 3.5 24 3-26 168-191 (357)
284 4dcu_A GTP-binding protein ENG 97.6 0.00049 1.7E-08 63.6 11.7 23 3-25 196-218 (456)
285 3vaa_A Shikimate kinase, SK; s 97.6 3.3E-05 1.1E-09 63.2 3.4 24 3-26 26-49 (199)
286 1jny_A EF-1-alpha, elongation 97.6 0.00035 1.2E-08 64.3 10.4 23 3-25 7-29 (435)
287 1e6c_A Shikimate kinase; phosp 97.6 3.1E-05 1.1E-09 61.3 3.0 26 1-26 1-26 (173)
288 2qor_A Guanylate kinase; phosp 97.6 2.6E-05 8.8E-10 64.1 2.5 25 3-27 13-37 (204)
289 1vht_A Dephospho-COA kinase; s 97.6 4.7E-05 1.6E-09 62.9 3.8 23 2-24 4-26 (218)
290 3gee_A MNME, tRNA modification 97.5 6.9E-05 2.4E-09 70.1 5.3 23 3-25 234-256 (476)
291 2dy1_A Elongation factor G; tr 97.5 0.0007 2.4E-08 65.7 12.6 31 3-33 10-42 (665)
292 1gtv_A TMK, thymidylate kinase 97.5 1.1E-05 3.8E-10 66.1 -0.1 32 4-35 2-33 (214)
293 3b9p_A CG5977-PA, isoform A; A 97.5 0.00023 7.9E-09 61.4 8.3 24 3-26 55-78 (297)
294 1tev_A UMP-CMP kinase; ploop, 97.5 4.8E-05 1.6E-09 61.0 3.7 25 2-26 3-27 (196)
295 3ake_A Cytidylate kinase; CMP 97.5 4.4E-05 1.5E-09 62.2 3.4 26 1-26 1-26 (208)
296 3co5_A Putative two-component 97.5 0.00014 4.9E-09 56.4 6.2 43 98-141 75-117 (143)
297 1uf9_A TT1252 protein; P-loop, 97.5 5.9E-05 2E-09 61.2 4.1 24 2-25 8-31 (203)
298 2p5t_B PEZT; postsegregational 97.5 3.9E-05 1.3E-09 65.4 3.1 34 2-37 32-65 (253)
299 3izq_1 HBS1P, elongation facto 97.5 0.0006 2.1E-08 65.6 11.7 23 3-25 168-190 (611)
300 2rhm_A Putative kinase; P-loop 97.5 5.4E-05 1.8E-09 60.9 3.7 25 2-26 5-29 (193)
301 1kk1_A EIF2gamma; initiation o 97.5 0.00057 2E-08 62.3 10.9 23 3-25 11-33 (410)
302 2wji_A Ferrous iron transport 97.5 7.2E-05 2.5E-09 58.8 4.3 24 3-26 4-27 (165)
303 2qgz_A Helicase loader, putati 97.5 0.00013 4.4E-09 64.2 6.3 32 3-34 153-185 (308)
304 2iyv_A Shikimate kinase, SK; t 97.5 3.7E-05 1.3E-09 61.7 2.5 26 1-26 1-26 (184)
305 1mky_A Probable GTP-binding pr 97.5 8.4E-05 2.9E-09 68.5 5.0 25 3-27 181-205 (439)
306 2bwj_A Adenylate kinase 5; pho 97.5 4.5E-05 1.5E-09 61.7 2.8 25 2-26 12-36 (199)
307 1nks_A Adenylate kinase; therm 97.5 6E-05 2.1E-09 60.3 3.5 26 3-28 2-27 (194)
308 2plr_A DTMP kinase, probable t 97.5 8E-05 2.7E-09 60.6 4.0 31 2-33 4-34 (213)
309 2ze6_A Isopentenyl transferase 97.5 6.9E-05 2.3E-09 64.0 3.7 24 3-26 2-25 (253)
310 1w1w_A Structural maintenance 97.4 0.0002 6.7E-09 65.7 6.8 27 3-29 27-53 (430)
311 3trf_A Shikimate kinase, SK; a 97.4 6.9E-05 2.4E-09 60.1 3.4 25 2-26 5-29 (185)
312 3r20_A Cytidylate kinase; stru 97.4 6.7E-05 2.3E-09 63.8 3.4 25 2-26 9-33 (233)
313 2zej_A Dardarin, leucine-rich 97.4 6.3E-05 2.2E-09 60.3 3.1 24 3-26 3-26 (184)
314 1kht_A Adenylate kinase; phosp 97.4 7.2E-05 2.4E-09 59.9 3.4 26 2-27 3-28 (192)
315 2wjg_A FEOB, ferrous iron tran 97.4 7.3E-05 2.5E-09 59.5 3.4 23 3-25 8-30 (188)
316 2jaq_A Deoxyguanosine kinase; 97.4 7E-05 2.4E-09 60.6 3.3 24 4-27 2-25 (205)
317 3zvr_A Dynamin-1; hydrolase, D 97.4 0.0016 5.5E-08 64.1 13.3 77 98-180 149-232 (772)
318 2qtf_A Protein HFLX, GTP-bindi 97.4 8.9E-05 3E-09 67.0 4.0 24 4-27 181-204 (364)
319 3geh_A MNME, tRNA modification 97.4 0.00035 1.2E-08 65.0 8.1 23 3-25 225-247 (462)
320 1ltq_A Polynucleotide kinase; 97.4 9.1E-05 3.1E-09 64.2 3.8 24 1-24 1-24 (301)
321 4a1f_A DNAB helicase, replicat 97.4 0.00012 4.2E-09 65.5 4.7 36 4-39 48-83 (338)
322 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.001 3.5E-08 55.9 10.3 23 4-26 41-63 (262)
323 3qks_A DNA double-strand break 97.4 8.3E-05 2.9E-09 61.5 3.4 22 4-25 25-46 (203)
324 1svm_A Large T antigen; AAA+ f 97.4 8E-05 2.7E-09 67.7 3.3 30 3-35 170-199 (377)
325 3auy_A DNA double-strand break 97.4 0.00023 7.9E-09 64.1 6.3 45 88-136 296-342 (371)
326 3nwj_A ATSK2; P loop, shikimat 97.4 7.5E-05 2.6E-09 64.0 2.9 25 2-26 48-72 (250)
327 1uj2_A Uridine-cytidine kinase 97.4 0.00011 3.7E-09 62.5 3.8 26 2-27 22-47 (252)
328 1ypw_A Transitional endoplasmi 97.4 0.00026 8.9E-09 70.2 7.1 25 3-27 239-263 (806)
329 2cdn_A Adenylate kinase; phosp 97.4 0.0001 3.5E-09 60.1 3.5 25 2-26 20-44 (201)
330 1g7s_A Translation initiation 97.4 0.0013 4.5E-08 63.1 11.6 23 3-25 6-28 (594)
331 2gj8_A MNME, tRNA modification 97.4 0.00012 3.9E-09 58.3 3.6 24 3-26 5-28 (172)
332 2v54_A DTMP kinase, thymidylat 97.4 0.00011 3.9E-09 59.5 3.7 25 2-26 4-28 (204)
333 1s0u_A EIF-2-gamma, translatio 97.3 0.00089 3.1E-08 61.0 10.0 23 3-25 9-31 (408)
334 3d3q_A TRNA delta(2)-isopenten 97.3 0.00014 4.7E-09 65.2 4.4 27 1-27 6-32 (340)
335 2b8t_A Thymidine kinase; deoxy 97.3 0.00018 6E-09 60.7 4.6 34 3-36 13-46 (223)
336 1q3t_A Cytidylate kinase; nucl 97.3 0.00011 3.8E-09 61.7 3.3 25 2-26 16-40 (236)
337 2c95_A Adenylate kinase 1; tra 97.3 0.00012 4E-09 59.0 3.4 25 2-26 9-33 (196)
338 2wwf_A Thymidilate kinase, put 97.3 0.00012 4.2E-09 59.7 3.4 26 2-27 10-35 (212)
339 1f60_A Elongation factor EEF1A 97.3 0.0028 9.7E-08 58.7 13.1 23 3-25 8-30 (458)
340 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.3E-09 59.0 3.4 23 3-25 11-33 (184)
341 1sxj_D Activator 1 41 kDa subu 97.3 0.00019 6.4E-09 63.1 4.8 23 5-27 61-83 (353)
342 2ohf_A Protein OLA1, GTP-bindi 97.3 0.00011 3.7E-09 67.2 3.3 24 2-25 22-45 (396)
343 1gvn_B Zeta; postsegregational 97.3 0.00011 3.9E-09 64.0 3.3 33 2-36 33-65 (287)
344 3m6a_A ATP-dependent protease 97.3 6.1E-05 2.1E-09 71.5 1.6 35 3-37 109-143 (543)
345 2o5v_A DNA replication and rep 97.3 0.00022 7.5E-09 64.3 5.2 21 4-24 28-48 (359)
346 2z0h_A DTMP kinase, thymidylat 97.3 0.00013 4.4E-09 58.8 3.2 25 4-28 2-26 (197)
347 4ag6_A VIRB4 ATPase, type IV s 97.3 0.00011 3.8E-09 66.4 3.2 34 4-37 37-70 (392)
348 1jal_A YCHF protein; nucleotid 97.3 0.00021 7.1E-09 64.6 4.8 25 1-25 1-25 (363)
349 1ukz_A Uridylate kinase; trans 97.3 0.00015 5.2E-09 59.0 3.6 25 2-26 15-39 (203)
350 3fb4_A Adenylate kinase; psych 97.3 0.00014 4.8E-09 59.8 3.2 23 4-26 2-24 (216)
351 3sr0_A Adenylate kinase; phosp 97.3 0.00014 4.8E-09 60.5 3.2 23 4-26 2-24 (206)
352 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.0047 1.6E-07 54.4 13.3 24 3-26 46-69 (322)
353 2chg_A Replication factor C sm 97.2 0.00046 1.6E-08 55.7 6.2 22 5-26 41-62 (226)
354 2vli_A Antibiotic resistance p 97.2 9.1E-05 3.1E-09 59.1 1.9 24 3-26 6-29 (183)
355 2pbr_A DTMP kinase, thymidylat 97.2 0.00016 5.4E-09 58.0 3.2 24 4-27 2-25 (195)
356 3dl0_A Adenylate kinase; phosp 97.2 0.00016 5.6E-09 59.5 3.2 23 4-26 2-24 (216)
357 3mca_A HBS1, elongation factor 97.2 0.00011 3.9E-09 70.4 2.6 22 3-24 178-199 (592)
358 1zak_A Adenylate kinase; ATP:A 97.2 0.00015 5.1E-09 60.1 2.9 24 3-26 6-29 (222)
359 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.8E-09 59.1 3.1 22 5-26 4-25 (186)
360 1sxj_C Activator 1 40 kDa subu 97.2 7.3E-05 2.5E-09 66.2 0.9 35 5-39 49-83 (340)
361 1zd8_A GTP:AMP phosphotransfer 97.2 0.00018 6.3E-09 59.8 3.3 24 3-26 8-31 (227)
362 2grj_A Dephospho-COA kinase; T 97.2 0.00021 7.1E-09 58.8 3.5 23 3-25 13-35 (192)
363 3iij_A Coilin-interacting nucl 97.2 0.00017 5.8E-09 57.7 2.9 24 3-26 12-35 (180)
364 1aky_A Adenylate kinase; ATP:A 97.2 0.0002 6.8E-09 59.3 3.4 24 3-26 5-28 (220)
365 3tlx_A Adenylate kinase 2; str 97.2 0.00022 7.4E-09 60.5 3.7 25 2-26 29-53 (243)
366 3kjh_A CO dehydrogenase/acetyl 97.2 0.00048 1.6E-08 57.3 5.8 37 5-41 3-39 (254)
367 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00015 5.2E-09 62.0 2.7 26 2-27 4-29 (260)
368 2f6r_A COA synthase, bifunctio 97.2 0.00021 7.3E-09 61.9 3.6 23 2-24 75-97 (281)
369 1nn5_A Similar to deoxythymidy 97.2 0.0002 6.9E-09 58.4 3.3 26 2-27 9-34 (215)
370 2wsm_A Hydrogenase expression/ 97.2 0.00029 1E-08 57.8 4.1 37 3-40 31-67 (221)
371 2pt5_A Shikimate kinase, SK; a 97.2 0.00023 7.8E-09 56.0 3.3 23 4-26 2-24 (168)
372 3umf_A Adenylate kinase; rossm 97.1 0.00025 8.4E-09 59.6 3.7 24 3-26 30-53 (217)
373 2dhr_A FTSH; AAA+ protein, hex 97.1 0.00028 9.7E-09 66.3 4.4 36 3-40 65-100 (499)
374 3bh0_A DNAB-like replicative h 97.1 0.0033 1.1E-07 55.3 11.1 35 3-37 69-103 (315)
375 1lv7_A FTSH; alpha/beta domain 97.1 0.00023 7.7E-09 60.3 3.4 25 3-27 46-70 (257)
376 2i1q_A DNA repair and recombin 97.1 0.0019 6.6E-08 56.6 9.5 22 3-24 99-120 (322)
377 3dpu_A RAB family protein; roc 97.1 0.00088 3E-08 63.1 7.7 23 3-25 42-64 (535)
378 3io5_A Recombination and repai 97.1 0.0016 5.3E-08 58.0 8.8 117 4-137 30-169 (333)
379 3crm_A TRNA delta(2)-isopenten 97.1 0.00028 9.6E-09 62.7 3.5 27 1-27 4-30 (323)
380 3syl_A Protein CBBX; photosynt 97.1 0.0048 1.6E-07 53.1 11.2 24 4-27 69-92 (309)
381 2xb4_A Adenylate kinase; ATP-b 97.1 0.00029 9.9E-09 58.7 3.3 23 4-26 2-24 (223)
382 1zuh_A Shikimate kinase; alpha 97.1 0.00031 1.1E-08 55.4 3.3 24 3-26 8-31 (168)
383 1m2o_B GTP-binding protein SAR 97.1 0.00039 1.3E-08 56.0 3.9 23 3-25 24-46 (190)
384 1f6b_A SAR1; gtpases, N-termin 97.1 0.00042 1.4E-08 56.2 4.1 22 3-24 26-47 (198)
385 1a7j_A Phosphoribulokinase; tr 97.0 8.2E-05 2.8E-09 65.0 -0.3 26 2-27 5-30 (290)
386 2xau_A PRE-mRNA-splicing facto 97.0 0.0011 3.8E-08 65.4 7.5 25 4-28 111-135 (773)
387 1e4v_A Adenylate kinase; trans 97.0 0.00034 1.2E-08 57.7 3.2 23 4-26 2-24 (214)
388 3cmu_A Protein RECA, recombina 97.0 0.0018 6.3E-08 69.5 9.4 120 3-140 1428-1564(2050)
389 3be4_A Adenylate kinase; malar 97.0 0.00037 1.3E-08 57.6 3.3 24 3-26 6-29 (217)
390 2nzj_A GTP-binding protein REM 97.0 0.00042 1.4E-08 54.1 3.4 23 3-25 5-27 (175)
391 2qag_A Septin-2, protein NEDD5 97.0 0.00031 1E-08 63.2 2.7 29 3-31 38-66 (361)
392 2r2a_A Uncharacterized protein 97.0 0.00054 1.8E-08 56.6 4.0 22 1-22 4-25 (199)
393 4b4t_J 26S protease regulatory 97.0 0.0095 3.3E-07 54.4 12.6 26 2-27 182-207 (405)
394 1g16_A RAS-related protein SEC 97.0 0.00045 1.6E-08 53.5 3.3 23 3-25 4-26 (170)
395 1z0j_A RAB-22, RAS-related pro 97.0 0.00051 1.7E-08 53.2 3.6 23 3-25 7-29 (170)
396 3q85_A GTP-binding protein REM 96.9 0.0005 1.7E-08 53.4 3.5 23 3-25 3-25 (169)
397 1ek0_A Protein (GTP-binding pr 96.9 0.00048 1.6E-08 53.3 3.3 23 3-25 4-26 (170)
398 3q72_A GTP-binding protein RAD 96.9 0.00038 1.3E-08 53.9 2.7 23 3-25 3-25 (166)
399 2h92_A Cytidylate kinase; ross 96.9 0.00039 1.3E-08 57.2 2.8 25 2-26 3-27 (219)
400 3uk6_A RUVB-like 2; hexameric 96.9 0.0065 2.2E-07 53.6 11.0 34 4-37 72-105 (368)
401 1z08_A RAS-related protein RAB 96.9 0.00056 1.9E-08 53.1 3.6 23 3-25 7-29 (170)
402 3avx_A Elongation factor TS, e 96.9 0.01 3.5E-07 61.0 13.5 23 3-25 297-319 (1289)
403 2lkc_A Translation initiation 96.9 0.00055 1.9E-08 53.6 3.4 23 3-25 9-31 (178)
404 3qq5_A Small GTP-binding prote 96.9 0.00026 8.9E-09 65.2 1.7 23 2-24 34-56 (423)
405 4dsu_A GTPase KRAS, isoform 2B 96.9 0.00055 1.9E-08 54.1 3.4 23 3-25 5-27 (189)
406 1fzq_A ADP-ribosylation factor 96.9 0.00047 1.6E-08 54.9 3.0 23 3-25 17-39 (181)
407 3tw8_B RAS-related protein RAB 96.9 0.0005 1.7E-08 53.9 3.0 23 3-25 10-32 (181)
408 1r2q_A RAS-related protein RAB 96.9 0.00057 2E-08 52.8 3.3 23 3-25 7-29 (170)
409 1upt_A ARL1, ADP-ribosylation 96.9 0.00065 2.2E-08 52.8 3.6 23 2-24 7-29 (171)
410 1ak2_A Adenylate kinase isoenz 96.9 0.00056 1.9E-08 57.2 3.4 24 3-26 17-40 (233)
411 2hf9_A Probable hydrogenase ni 96.9 0.00067 2.3E-08 55.8 3.8 36 3-39 39-74 (226)
412 3ihw_A Centg3; RAS, centaurin, 96.9 0.0012 4E-08 52.9 5.1 23 3-25 21-43 (184)
413 1moz_A ARL1, ADP-ribosylation 96.8 0.00037 1.3E-08 55.0 2.0 22 3-24 19-40 (183)
414 2y8e_A RAB-protein 6, GH09086P 96.8 0.00062 2.1E-08 53.2 3.3 23 3-25 15-37 (179)
415 1ojl_A Transcriptional regulat 96.8 0.0035 1.2E-07 54.8 8.4 28 4-31 27-54 (304)
416 2hxs_A RAB-26, RAS-related pro 96.8 0.00069 2.4E-08 53.0 3.5 23 3-25 7-29 (178)
417 1g3q_A MIND ATPase, cell divis 96.8 0.0016 5.6E-08 53.9 5.9 42 1-42 1-43 (237)
418 1z0f_A RAB14, member RAS oncog 96.8 0.00076 2.6E-08 52.7 3.5 23 3-25 16-38 (179)
419 3bc1_A RAS-related protein RAB 96.8 0.00071 2.4E-08 53.5 3.3 23 3-25 12-34 (195)
420 2oil_A CATX-8, RAS-related pro 96.8 0.00075 2.6E-08 53.9 3.5 23 3-25 26-48 (193)
421 2g6b_A RAS-related protein RAB 96.8 0.00087 3E-08 52.6 3.5 23 3-25 11-33 (180)
422 4b4t_L 26S protease subunit RP 96.8 0.0029 1E-07 58.4 7.5 26 2-27 215-240 (437)
423 3cf0_A Transitional endoplasmi 96.8 0.00072 2.4E-08 58.9 3.3 25 3-27 50-74 (301)
424 2bme_A RAB4A, RAS-related prot 96.7 0.00081 2.8E-08 53.1 3.3 23 3-25 11-33 (186)
425 3auy_A DNA double-strand break 96.7 0.00072 2.5E-08 60.8 3.3 20 4-23 27-46 (371)
426 1r8s_A ADP-ribosylation factor 96.7 0.00085 2.9E-08 51.8 3.2 21 4-24 2-22 (164)
427 1m7b_A RND3/RHOE small GTP-bin 96.7 0.00085 2.9E-08 53.4 3.3 23 3-25 8-30 (184)
428 1ksh_A ARF-like protein 2; sma 96.7 0.00087 3E-08 53.1 3.4 23 3-25 19-41 (186)
429 2zts_A Putative uncharacterize 96.7 0.0013 4.5E-08 54.6 4.5 36 3-38 31-67 (251)
430 2efe_B Small GTP-binding prote 96.7 0.00092 3.1E-08 52.5 3.4 23 3-25 13-35 (181)
431 1jbk_A CLPB protein; beta barr 96.7 0.00093 3.2E-08 52.5 3.4 24 4-27 45-68 (195)
432 4hlc_A DTMP kinase, thymidylat 96.7 0.001 3.6E-08 55.0 3.8 33 1-34 1-33 (205)
433 2gf9_A RAS-related protein RAB 96.7 0.00093 3.2E-08 53.3 3.3 23 3-25 23-45 (189)
434 3q9l_A Septum site-determining 96.7 0.0016 5.4E-08 54.7 4.9 42 1-42 1-43 (260)
435 4dzz_A Plasmid partitioning pr 96.7 0.0034 1.2E-07 50.6 6.7 40 1-41 1-41 (206)
436 2xtp_A GTPase IMAP family memb 96.7 0.001 3.5E-08 56.3 3.7 23 3-25 23-45 (260)
437 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0032 1.1E-07 56.0 7.0 22 4-25 125-146 (331)
438 3ea0_A ATPase, para family; al 96.7 0.0026 9E-08 52.8 6.1 40 3-42 5-46 (245)
439 3foz_A TRNA delta(2)-isopenten 96.7 0.0011 3.7E-08 58.7 3.8 25 2-26 10-34 (316)
440 3tkl_A RAS-related protein RAB 96.7 0.001 3.4E-08 53.1 3.3 23 3-25 17-39 (196)
441 3pfi_A Holliday junction ATP-d 96.7 0.0043 1.5E-07 54.3 7.7 23 4-26 57-79 (338)
442 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.0011 3.7E-08 52.2 3.5 23 3-25 6-28 (186)
443 1zj6_A ADP-ribosylation factor 96.7 0.0011 3.9E-08 52.6 3.6 22 3-24 17-38 (187)
444 2fg5_A RAB-22B, RAS-related pr 96.7 0.0011 3.8E-08 53.1 3.5 23 3-25 24-46 (192)
445 3dz8_A RAS-related protein RAB 96.6 0.0012 4E-08 52.9 3.6 23 3-25 24-46 (191)
446 4edh_A DTMP kinase, thymidylat 96.6 0.001 3.5E-08 55.4 3.4 33 2-34 6-38 (213)
447 1zbd_A Rabphilin-3A; G protein 96.6 0.0011 3.8E-08 53.4 3.4 23 3-25 9-31 (203)
448 3hu3_A Transitional endoplasmi 96.6 0.0042 1.4E-07 58.1 7.7 24 3-26 239-262 (489)
449 2h17_A ADP-ribosylation factor 96.6 0.0011 3.6E-08 52.6 3.2 23 3-25 22-44 (181)
450 2q6t_A DNAB replication FORK h 96.6 0.053 1.8E-06 49.7 15.0 35 3-37 201-236 (444)
451 3t5g_A GTP-binding protein RHE 96.6 0.0011 3.9E-08 52.1 3.3 22 3-24 7-28 (181)
452 3oes_A GTPase rhebl1; small GT 96.6 0.0012 4.2E-08 53.2 3.5 23 3-25 25-47 (201)
453 1njg_A DNA polymerase III subu 96.6 0.0012 3.9E-08 53.8 3.3 24 4-27 47-70 (250)
454 1z06_A RAS-related protein RAB 96.6 0.0013 4.5E-08 52.4 3.6 23 3-25 21-43 (189)
455 1x3s_A RAS-related protein RAB 96.6 0.0012 4.1E-08 52.4 3.3 23 3-25 16-38 (195)
456 3cbq_A GTP-binding protein REM 96.6 0.00084 2.9E-08 54.3 2.4 23 3-25 24-46 (195)
457 2p5s_A RAS and EF-hand domain 96.6 0.0013 4.6E-08 52.9 3.6 23 3-25 29-51 (199)
458 2h57_A ADP-ribosylation factor 96.6 0.00092 3.2E-08 53.3 2.6 23 3-25 22-44 (190)
459 2a5j_A RAS-related protein RAB 96.6 0.0013 4.5E-08 52.5 3.5 23 3-25 22-44 (191)
460 1zd9_A ADP-ribosylation factor 96.6 0.0012 4.2E-08 52.6 3.3 23 3-25 23-45 (188)
461 3bwd_D RAC-like GTP-binding pr 96.6 0.0013 4.3E-08 51.7 3.4 23 3-25 9-31 (182)
462 2atv_A RERG, RAS-like estrogen 96.6 0.0014 4.9E-08 52.5 3.7 23 3-25 29-51 (196)
463 3cph_A RAS-related protein SEC 96.6 0.0014 4.9E-08 52.9 3.6 23 3-25 21-43 (213)
464 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0013 4.4E-08 59.3 3.6 25 3-27 25-49 (359)
465 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0014 4.6E-08 53.0 3.5 23 3-25 9-31 (206)
466 3reg_A RHO-like small GTPase; 96.6 0.0013 4.5E-08 52.6 3.3 23 3-25 24-46 (194)
467 2dby_A GTP-binding protein; GD 96.6 0.0009 3.1E-08 60.5 2.5 23 3-25 2-24 (368)
468 2ew1_A RAS-related protein RAB 96.5 0.0014 4.9E-08 53.4 3.5 23 3-25 27-49 (201)
469 3exa_A TRNA delta(2)-isopenten 96.5 0.0017 5.9E-08 57.5 4.2 25 2-26 3-27 (322)
470 1q57_A DNA primase/helicase; d 96.5 0.12 4.2E-06 47.9 17.1 149 3-171 243-400 (503)
471 3end_A Light-independent proto 96.5 0.0023 7.7E-08 55.6 4.9 40 3-42 42-81 (307)
472 1tue_A Replication protein E1; 96.5 0.00089 3E-08 55.9 2.2 23 4-26 60-82 (212)
473 2o52_A RAS-related protein RAB 96.5 0.0014 4.9E-08 52.9 3.4 23 3-25 26-48 (200)
474 2p65_A Hypothetical protein PF 96.5 0.0011 3.7E-08 52.2 2.6 25 4-28 45-69 (187)
475 3zvl_A Bifunctional polynucleo 96.5 0.0012 4E-08 60.5 3.2 25 2-26 258-282 (416)
476 4ad8_A DNA repair protein RECN 96.5 0.00043 1.5E-08 65.1 0.2 22 4-25 62-83 (517)
477 2fv8_A H6, RHO-related GTP-bin 96.5 0.0014 5E-08 53.1 3.3 23 3-25 26-48 (207)
478 2iwr_A Centaurin gamma 1; ANK 96.5 0.0012 4.2E-08 51.8 2.8 23 3-25 8-30 (178)
479 1gwn_A RHO-related GTP-binding 96.5 0.0014 4.9E-08 53.5 3.3 23 3-25 29-51 (205)
480 3gmt_A Adenylate kinase; ssgci 96.5 0.0014 4.9E-08 55.4 3.3 23 4-26 10-32 (230)
481 2cjw_A GTP-binding protein GEM 96.5 0.0016 5.6E-08 52.5 3.5 23 3-25 7-29 (192)
482 2ocp_A DGK, deoxyguanosine kin 96.5 0.0014 4.9E-08 54.9 3.3 25 3-27 3-27 (241)
483 2il1_A RAB12; G-protein, GDP, 96.5 0.0012 4.3E-08 52.9 2.8 22 3-24 27-48 (192)
484 2q3h_A RAS homolog gene family 96.5 0.0017 6E-08 52.1 3.6 23 3-25 21-43 (201)
485 2fh5_B SR-beta, signal recogni 96.5 0.0015 5.3E-08 53.0 3.2 25 2-26 7-31 (214)
486 2b6h_A ADP-ribosylation factor 96.5 0.0014 4.9E-08 52.6 3.0 22 3-24 30-51 (192)
487 3c5c_A RAS-like protein 12; GD 96.5 0.0018 6.2E-08 51.8 3.6 23 3-25 22-44 (187)
488 1hyq_A MIND, cell division inh 96.5 0.0032 1.1E-07 53.0 5.4 42 1-42 1-43 (263)
489 3bfv_A CAPA1, CAPB2, membrane 96.5 0.0028 9.7E-08 54.5 5.0 40 3-42 83-123 (271)
490 2bjv_A PSP operon transcriptio 96.4 0.0027 9.3E-08 53.7 4.8 32 4-35 31-62 (265)
491 4bas_A ADP-ribosylation factor 96.4 0.0014 4.9E-08 52.3 2.9 23 3-25 18-40 (199)
492 1p5z_B DCK, deoxycytidine kina 96.4 0.001 3.5E-08 56.6 2.1 25 3-27 25-49 (263)
493 2gco_A H9, RHO-related GTP-bin 96.4 0.0017 5.9E-08 52.4 3.3 23 3-25 26-48 (201)
494 2j1l_A RHO-related GTP-binding 96.4 0.0017 5.9E-08 53.1 3.3 22 3-24 35-56 (214)
495 2fu5_C RAS-related protein RAB 96.4 0.0011 3.8E-08 52.3 2.0 22 3-24 9-30 (183)
496 3cmw_A Protein RECA, recombina 96.4 0.0063 2.1E-07 64.6 8.2 36 3-38 733-768 (1706)
497 2f7s_A C25KG, RAS-related prot 96.4 0.0019 6.6E-08 52.6 3.5 24 3-26 26-49 (217)
498 3cio_A ETK, tyrosine-protein k 96.4 0.0024 8.2E-08 55.8 4.3 40 3-42 105-145 (299)
499 3a8t_A Adenylate isopentenyltr 96.4 0.0023 7.9E-08 57.2 4.2 24 3-26 41-64 (339)
500 3llu_A RAS-related GTP-binding 96.4 0.0021 7E-08 51.7 3.5 25 2-26 20-44 (196)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.94 E-value=2.2e-27 Score=215.88 Aligned_cols=144 Identities=14% Similarity=0.210 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------------CCCCCCcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------------ENFDYPVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------------~~~~y~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... |+....+.+||++++.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999987632 2223345678988874
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+||.+..... ...+++++ +++||++|+. +|++||+||||+ ||+.++..++ ++++++
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~--~P~lLLlDEPTs~LD~~~~~~i~-~lL~~l 209 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALAS--NPKVLLCDQATSALDPATTRSIL-ELLKDI 209 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCCccCCHHHHHHHH-HHHHHH
Confidence 56789999997654333 23466654 4999999999 999999999999 9999999999 999999
Q ss_pred Hh-CCCeEEEEEecccccccChHHHHHHHH
Q 025795 127 KS-RNFNVCAVYLLDSQFITDVTKFISGCM 155 (248)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l 155 (248)
++ .|.++++| +|.+.....+|+.++
T Consensus 210 ~~~~g~Tii~v----THdl~~~~~~aDrv~ 235 (366)
T 3tui_C 210 NRRLGLTILLI----THEMDVVKRICDCVA 235 (366)
T ss_dssp HHHSCCEEEEE----ESCHHHHHHHCSEEE
T ss_pred HHhCCCEEEEE----ecCHHHHHHhCCEEE
Confidence 75 58898766 576665566655443
No 2
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.93 E-value=5.3e-26 Score=196.16 Aligned_cols=139 Identities=16% Similarity=0.215 Sum_probs=107.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----CCCCCC-------CcccChhhhhh-------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----AENFDY-------PVAMDIRELIS------------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----~~~~~y-------~~~~~i~e~i~------------- 58 (248)
+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...++| .+.++++|++.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 105 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDR 105 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHH
Confidence 68999999999999999999999999999999997652 122333 23467877763
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++.+ .|.++
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tv 180 (240)
T 2onk_A 106 RVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVI--QPRLLLLDEPLSAVDLKTKGVLM-EELRFVQREFDVPI 180 (240)
T ss_dssp HHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTT--CCSSBEEESTTSSCCHHHHHHHH-HHHHHHHHHHTCCE
T ss_pred HHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45778889997654433 24566654 4899999999 999999999999 9999999999 88999865 48888
Q ss_pred EEEEecccccccChHHHH
Q 025795 134 CAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 134 i~v~l~d~~~~~d~~~~~ 151 (248)
+++ +|...+...++
T Consensus 181 i~v----tHd~~~~~~~~ 194 (240)
T 2onk_A 181 LHV----THDLIEAAMLA 194 (240)
T ss_dssp EEE----ESCHHHHHHHC
T ss_pred EEE----eCCHHHHHHhC
Confidence 766 45554444443
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=1.1e-25 Score=192.04 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------CCCCC-------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------ENFDY-------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~~~~y-------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| .+.++++|++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 4689999999999999999999999999999999876521 11222 34568877763
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. +++++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~--~p~lllLDEPt~~LD~~~~~~~~-~~l~~ 185 (224)
T 2pcj_A 111 GKPKKEAKERGEYLLSELGLGDKLSRK--PYELSGGEQQRVAIARALAN--EPILLFADEPTGNLDSANTKRVM-DIFLK 185 (224)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHTTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 45678889997654443 24566654 4899999999 999999999999 9999999999 89999
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
++++|.+++++
T Consensus 186 l~~~g~tvi~v 196 (224)
T 2pcj_A 186 INEGGTSIVMV 196 (224)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCEEEEE
Confidence 87668888766
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=6.6e-26 Score=194.88 Aligned_cols=129 Identities=18% Similarity=0.189 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------------CCCCCCcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------------ENFDYPVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------------~~~~y~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ++....+.++++|++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999976521 2222244568888763
Q ss_pred -------------HHHHHHHhCCCCCC-chhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 -------------LEDVMEELGLGPNG-GLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 -------------~~~~m~~~~L~~~~-~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
+.++++.+++.+.. ... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~QRv~iAral~~--~p~llllDEPts~LD~~~~~~i~-~ 186 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHK--PNQLSGGQQQRVAIARALAN--NPPIILADQPTWALDSKTGEKIM-Q 186 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-H
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-H
Confidence 45678888886532 222 24566654 4999999999 999999999999 9999999999 9
Q ss_pred HHHHHHhC-CCeEEEE
Q 025795 122 FVDHLKSR-NFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~-~~~ii~v 136 (248)
++++++++ |.++++|
T Consensus 187 ~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 187 LLKKLNEEDGKTVVVV 202 (235)
T ss_dssp HHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 99998754 8888766
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=8.1e-26 Score=197.50 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C--------------CCCCCCcccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A--------------ENFDYPVAMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~--------------~~~~y~~~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. . +...+.+.++++|++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~ 130 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK 130 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999997652 0 1222234567777653
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++.+++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++
T Consensus 131 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~--~p~lllLDEPts~LD~~~~~~~~-~~l~~l 205 (263)
T 2olj_A 131 WPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAM--EPKIMLFDEPTSALDPEMVGEVL-SVMKQL 205 (263)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHC--CCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 34678888887543333 24566654 4899999999 999999999999 9999999999 899998
Q ss_pred HhCCCeEEEEEecccccccChHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.++|.+++++ +|.+.....++
T Consensus 206 ~~~g~tvi~v----tHd~~~~~~~~ 226 (263)
T 2olj_A 206 ANEGMTMVVV----THEMGFAREVG 226 (263)
T ss_dssp HHTTCEEEEE----CSCHHHHHHHC
T ss_pred HhCCCEEEEE----cCCHHHHHHhC
Confidence 7668888766 56655444443
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=3.7e-26 Score=198.93 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCCCcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDYPVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+.+.++++|++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 121 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS 121 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChH
Confidence 4789999999999999999999999999999999976531 2222234568888764
Q ss_pred -----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 -----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 -----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++++.|
T Consensus 122 ~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 196 (256)
T 1vpl_A 122 EIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMV--NPRLAILDEPTSGLDVLNAREVR-KILKQASQEG 196 (256)
T ss_dssp HHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCC
Confidence 35678888987643333 24566654 4899999999 999999999999 9999999999 9999987678
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.+++++
T Consensus 197 ~tiiiv 202 (256)
T 1vpl_A 197 LTILVS 202 (256)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 887765
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=6.5e-26 Score=197.92 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=107.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------------------------CCCCCCcccChhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------------------------ENFDYPVAMDIRE 55 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------------------------~~~~y~~~~~i~e 55 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+.+.+++++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 4789999999999999999999999999999999876530 1222234567877
Q ss_pred hhh-----------------HHHHHHHhCCCCC-CchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHh
Q 025795 56 LIS-----------------LEDVMEELGLGPN-GGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFT 114 (248)
Q Consensus 56 ~i~-----------------~~~~m~~~~L~~~-~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~ 114 (248)
++. ++++++.+|+.+. .... ...+++++ +++||++++. +|+++|+||||+ ||+.+
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~ 188 (262)
T 1b0u_A 113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAM--EPDVLLFDEPTSALDPEL 188 (262)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTSCHHH
T ss_pred HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccCCHHH
Confidence 664 3467788888654 3222 24566654 4899999999 999999999999 99999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 115 HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 115 ~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+..+. +++++++++|.+++++ +|.+.....+++
T Consensus 189 ~~~~~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d 221 (262)
T 1b0u_A 189 VGEVL-RIMQQLAEEGKTMVVV----THEMGFARHVSS 221 (262)
T ss_dssp HHHHH-HHHHHHHHTTCCEEEE----CSCHHHHHHHCS
T ss_pred HHHHH-HHHHHHHhCCCEEEEE----eCCHHHHHHhCC
Confidence 99999 8999987668888766 566554444433
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=7.5e-26 Score=198.91 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC---------CCCCC--------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA---------ENFDY--------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~---------~~~~y--------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..++| ....++++++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~ 114 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC
Confidence 4689999999999999999999999999999999987621 12222 12457887764
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|++||+||||+ ||+.++..++ ++++++
T Consensus 115 ~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~--~P~lLlLDEPts~LD~~~~~~i~-~~l~~l 189 (275)
T 3gfo_A 115 LPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVM--EPKVLILDEPTAGLDPMGVSEIM-KLLVEM 189 (275)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 56788999997654433 24566654 4999999999 999999999999 9999999999 999998
Q ss_pred H-hCCCeEEEEEecccccccChHHHHH
Q 025795 127 K-SRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~-~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+ ++|.+++++ +|.+.....+++
T Consensus 190 ~~~~g~tvi~v----tHdl~~~~~~~d 212 (275)
T 3gfo_A 190 QKELGITIIIA----THDIDIVPLYCD 212 (275)
T ss_dssp HHHHCCEEEEE----ESCCSSGGGGCS
T ss_pred HhhCCCEEEEE----ecCHHHHHHhCC
Confidence 7 458888766 466655555544
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=1.1e-25 Score=204.41 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC---------CCCC-------CCCcccChhhhhh--------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA---------AENF-------DYPVAMDIRELIS-------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~---------~~~~-------~y~~~~~i~e~i~-------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ...+ ...+.+||+|++.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999999999999999997651 1222 2345678988874
Q ss_pred --------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH-
Q 025795 59 --------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL- 126 (248)
Q Consensus 59 --------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l- 126 (248)
++++++.+++.+...+.. ..+++++ +++||++|+. +|++|||||||+ ||+..+..+. +.+.++
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~--~~LSGGq~QRValArAL~~--~P~lLLLDEPts~LD~~~r~~l~-~~l~~~~ 185 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYP--HELSGGQQQRAALARALAP--DPELILLDEPFSALDEQLRRQIR-EDMIAAL 185 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCG--GGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCCh--hhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 678899999987655442 4566654 5999999999 999999999999 9999999998 655554
Q ss_pred HhCCCeEEEEEecccccccChHHHHH
Q 025795 127 KSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 127 ~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++.|.++++| +|...+...+++
T Consensus 186 ~~~g~tvi~v----THd~~ea~~~aD 207 (359)
T 3fvq_A 186 RANGKSAVFV----SHDREEALQYAD 207 (359)
T ss_dssp HHTTCEEEEE----CCCHHHHHHHCS
T ss_pred HhCCCEEEEE----eCCHHHHHHHCC
Confidence 4568888766 566655555544
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.93 E-value=9.7e-26 Score=206.13 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... |+....|.+||+|++.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~ 109 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 109 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999976532 2333456789998874
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.+...+. ...+++++ +++||++|+. +|++||+||||+ ||+..+..+. +.++++.+ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~--p~~LSGGqrQRVaiArAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~l~~~~g 184 (381)
T 3rlf_A 110 INQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVA--EPSVFLLDEPLSNLDAALRVQMR-IEISRLHKRLG 184 (381)
T ss_dssp HHHHHHHHHHHTTCGGGTTCC--GGGSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchhhcCC--hhHCCHHHHHHHHHHHHHHc--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHhCC
Confidence 56789999998765444 24566654 4999999999 999999999999 9999999998 88898865 48
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++++| +|...+...+++
T Consensus 185 ~tii~v----THd~~ea~~~aD 202 (381)
T 3rlf_A 185 RTMIYV----THDQVEAMTLAD 202 (381)
T ss_dssp CEEEEE----CSCHHHHHHHCS
T ss_pred CEEEEE----ECCHHHHHHhCC
Confidence 888766 566655554444
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=6.9e-26 Score=195.26 Aligned_cols=140 Identities=15% Similarity=0.126 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS--------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~--------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+.| .+.++++|++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~ 112 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH
Confidence 4789999999999999999999999999999999976531 11333 33567777663
Q ss_pred ------HHHHHHHh-CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 ------LEDVMEEL-GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 ------~~~~m~~~-~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++++.+ ++.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~ 187 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMS--RPKLLMMDEPSLGLAPILVSEVF-EVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCCcccCCHHHHHHHH-HHHHHHHH
Confidence 34566666 365443322 23455554 4899999999 999999999999 9999999999 88999876
Q ss_pred CCCeEEEEEecccccccChHHHH
Q 025795 129 RNFNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 129 ~~~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.|.+++++ +|...+...++
T Consensus 188 ~g~tvi~v----tHd~~~~~~~~ 206 (240)
T 1ji0_A 188 EGTTILLV----EQNALGALKVA 206 (240)
T ss_dssp TTCCEEEE----ESCHHHHHHHC
T ss_pred CCCEEEEE----ecCHHHHHHhC
Confidence 78888766 45554444443
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.93 E-value=2e-25 Score=194.16 Aligned_cols=141 Identities=20% Similarity=0.170 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELI---------- 57 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i---------- 57 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+.| .+.++++|++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 4789999999999999999999999999999999976521 11222 2234554433
Q ss_pred -------------------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH
Q 025795 58 -------------------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH 115 (248)
Q Consensus 58 -------------------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~ 115 (248)
.++++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMT--NPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHH
Confidence 145677788886543333 24566654 4899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHH
Q 025795 116 VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 116 ~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
..++ +++++++++|.+++++ +|.......+++
T Consensus 190 ~~l~-~~l~~l~~~g~tvi~v----tHd~~~~~~~~d 221 (257)
T 1g6h_A 190 HDIF-NHVLELKAKGITFLII----EHRLDIVLNYID 221 (257)
T ss_dssp HHHH-HHHHHHHHTTCEEEEE----CSCCSTTGGGCS
T ss_pred HHHH-HHHHHHHHCCCEEEEE----ecCHHHHHHhCC
Confidence 9999 9999987678888766 465554444433
No 13
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=9.3e-26 Score=191.52 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C-------CCCCCCcccChhhhhh--------------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDYPVAMDIRELIS--------------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~y~~~~~i~e~i~--------------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.++. . +...+.+.++++|++. +
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 115 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI 115 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence 368999999999999999999999999999999987641 1 2222334567777663 3
Q ss_pred HHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 60 EDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 60 ~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++++.+|+.+. ... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++.++|.+++++
T Consensus 116 ~~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~~~~~g~tiiiv 189 (214)
T 1sgw_A 116 MDALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLV--NAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVIIS 189 (214)
T ss_dssp HHHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESTTTTSCTTTHHHHH-HHHHHHHHHHSEEEEE
T ss_pred HHHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCcCCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 567888998765 333 34566654 4899999999 999999999999 9999999999 8888887557777665
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.92 E-value=3.4e-26 Score=200.16 Aligned_cols=143 Identities=20% Similarity=0.274 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... +.....+.+++++++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ 117 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence 4789999999999999999999999999999999987632 1222234568888763
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccC----CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNY----LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~----~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++++.+++.+..... ...+++++ +++||++++.. .+|++||+||||+ ||+.++..++ +++++++
T Consensus 118 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~-~~l~~l~ 194 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLALAQRD--YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL-RLLRQLT 194 (266)
T ss_dssp HHHHHHHHHHHTTCSTTTTSB--GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH-HHHHHHH
Confidence 67889999997664443 24566654 48999999851 1799999999999 9999999999 9999987
Q ss_pred hC-CCeEEEEEecccccccChHHHHH
Q 025795 128 SR-NFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 128 ~~-~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
++ +.+++++ +|.+.....+++
T Consensus 195 ~~~~~tvi~v----tHdl~~~~~~~d 216 (266)
T 4g1u_C 195 RQEPLAVCCV----LHDLNLAALYAD 216 (266)
T ss_dssp HHSSEEEEEE----CSCHHHHHHHCS
T ss_pred HcCCCEEEEE----EcCHHHHHHhCC
Confidence 54 5677655 576655555544
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.92 E-value=2.5e-25 Score=201.94 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+ ...+.++++|++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE 121 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999976521 222 2345678888874
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.+...+. ...+++++ +++||++|+. +|+++|||||++ ||+.++..+. ++++++.+ .|
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 196 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRF--PHELSGGQQQRVALARALAP--RPQVLLFDEPFAAIDTQIRRELR-TFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTCCSSHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 46788899997654443 24566654 4999999999 999999999999 9999999998 88888865 48
Q ss_pred CeEEEEEecccccccChHHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~s 152 (248)
.++++| +|...+...+++
T Consensus 197 ~tvi~v----THd~~~a~~~ad 214 (355)
T 1z47_A 197 VTSVFV----THDQEEALEVAD 214 (355)
T ss_dssp CEEEEE----CSCHHHHHHHCS
T ss_pred CEEEEE----CCCHHHHHHhCC
Confidence 888766 566554444433
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=3.2e-25 Score=201.56 Aligned_cols=129 Identities=18% Similarity=0.162 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ++..+.+.+|+++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDE 109 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999999976521 2223345678888874
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.+...+. ...+++++ +++||++++. +|+++|||||++ ||+.++..+. +.++++.+ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~--~~~LSgGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (359)
T 2yyz_A 110 VEKRVVEIARKLLIDNLLDRK--PTQLSGGQQQRVALARALVK--QPKVLLFDEPLSNLDANLRMIMR-AEIKHLQQELG 184 (359)
T ss_dssp TTHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 56789999997654443 24566654 4999999999 999999999999 9999999998 88888865 48
Q ss_pred CeEEEE
Q 025795 131 FNVCAV 136 (248)
Q Consensus 131 ~~ii~v 136 (248)
.++++|
T Consensus 185 ~tvi~v 190 (359)
T 2yyz_A 185 ITSVYV 190 (359)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 888766
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=3.7e-25 Score=201.29 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ++....+.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 109 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREE 109 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999999976521 2222345678888874
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CC
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RN 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~ 130 (248)
++++++.+++.+...+. ...+++++ +++||++|+. +|+++|||||++ ||+..+..+. +.++++.+ .|
T Consensus 110 ~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 184 (362)
T 2it1_A 110 IDKKVREVAKMLHIDKLLNRY--PWQLSGGQQQRVAIARALVK--EPEVLLLDEPLSNLDALLRLEVR-AELKRLQKELG 184 (362)
T ss_dssp HHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESGGGGSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCchHhhCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhCC
Confidence 46788899998765444 24566654 4999999999 999999999999 9999999998 88888865 48
Q ss_pred CeEEEEEecccccccChHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.++++| +|...+...++
T Consensus 185 ~tvi~v----THd~~~a~~~a 201 (362)
T 2it1_A 185 ITTVYV----THDQAEALAMA 201 (362)
T ss_dssp CEEEEE----ESCHHHHHHHC
T ss_pred CEEEEE----CCCHHHHHHhC
Confidence 888766 45544444333
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.92 E-value=4.7e-25 Score=199.74 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC------------CCCCCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA------------ENFDYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~------------~~~~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ++....+.++++|++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999976531 2223355678988874
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeE
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNV 133 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~i 133 (248)
++++++.+++.+...+. ...+++++ +++||++|+. +|+++|||||++ ||+.++..+. +.++++.+ .|.++
T Consensus 107 ~v~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~ti 181 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRN--PLTLSGGEQQRVALARALVT--NPKILLLDEPLSALDPRTQENAR-EMLSVLHKKNKLTV 181 (348)
T ss_dssp HHHHHHHHTTCTTTTTSC--GGGSCHHHHHHHHHHHHTTS--CCSEEEEESSSTTSCHHHHHHHH-HHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHHHhcCCEE
Confidence 45788899998765444 24566654 4999999999 999999999999 9999999998 88888864 58888
Q ss_pred EEEEecccccccChHHH
Q 025795 134 CAVYLLDSQFITDVTKF 150 (248)
Q Consensus 134 i~v~l~d~~~~~d~~~~ 150 (248)
++| +|...+...+
T Consensus 182 i~v----THd~~~~~~~ 194 (348)
T 3d31_A 182 LHI----THDQTEARIM 194 (348)
T ss_dssp EEE----ESCHHHHHHH
T ss_pred EEE----eCCHHHHHHh
Confidence 766 4555444443
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=4.7e-25 Score=201.32 Aligned_cols=140 Identities=16% Similarity=0.123 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----CCC-------CCCcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----ENF-------DYPVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----~~~-------~y~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+... ..+ ...+.+|+++++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~ 117 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE 117 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHH
Confidence 4689999999999999999999999999999999976521 122 2245678888764
Q ss_pred ----HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-C
Q 025795 59 ----LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-N 130 (248)
Q Consensus 59 ----~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~ 130 (248)
++++++.+++.+...+.. ..++++ ++++||++|+. +|+++|||||++ ||+..+..+. +.++++.++ |
T Consensus 118 ~~~~v~~~l~~~~L~~~~~r~~--~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l~~~~g 192 (372)
T 1v43_A 118 IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVV--EPDVLLMDEPLSNLDAKLRVAMR-AEIKKLQQKLK 192 (372)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCT--TTCCSSCHHHHHHHHHHTT--CCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHhcCCh--hhCCHHHHHHHHHHHHHhc--CCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCC
Confidence 567889999976544432 346655 45999999999 999999999999 9999999998 888888654 8
Q ss_pred CeEEEEEecccccccChHHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKFI 151 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~~ 151 (248)
.++++| +|...+...++
T Consensus 193 ~tvi~v----THd~~~a~~~a 209 (372)
T 1v43_A 193 VTTIYV----THDQVEAMTMG 209 (372)
T ss_dssp CEEEEE----ESCHHHHHHHC
T ss_pred CEEEEE----eCCHHHHHHhC
Confidence 888766 35544433333
No 20
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.92 E-value=4.4e-25 Score=200.33 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----------C-------CCCCCCcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----------A-------ENFDYPVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----------~-------~~~~y~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. . ++....+.++++|++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999999999999986531 1 2222345678888764
Q ss_pred ---------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 ---------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ---------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++.+++.+...+. ...+++++ +++||++|+. +|+++|||||++ ||+..+..+. +.++++
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~--~~~LSGGq~QRvalAraL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~l 186 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHF--PRELSGAQQQRVALARALVK--DPSLLLLDEPFSNLDARMRDSAR-ALVKEV 186 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCGGGHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHH
Confidence 56788999997654443 24566654 4999999999 999999999999 9999999999 888888
Q ss_pred Hh-CCCeEEEEEecccccccChHHH
Q 025795 127 KS-RNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 127 ~~-~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+ .|.++++| +|...+...+
T Consensus 187 ~~~~g~tvi~v----THd~~~~~~~ 207 (353)
T 1oxx_K 187 QSRLGVTLLVV----SHDPADIFAI 207 (353)
T ss_dssp HHHHCCEEEEE----ESCHHHHHHH
T ss_pred HHhcCCEEEEE----eCCHHHHHHh
Confidence 65 48888766 4555444443
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.92 E-value=6.8e-25 Score=200.35 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC-----------CCCC-------CCCcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA-----------AENF-------DYPVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~-----------~~~~-------~y~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ...+ ...+.+++++++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999999999999999986531 1222 2345678888874
Q ss_pred ----------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 ----------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 ----------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
++++++.+++.+...+. ...+++++ +++||++|+. +|+++|||||++ ||+..+..+. +.+++
T Consensus 110 ~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~--~P~lLLLDEP~s~LD~~~r~~l~-~~l~~ 184 (372)
T 1g29_1 110 KVPRQEIDQRVREVAELLGLTELLNRK--PRELSGGQRQRVALGRAIVR--KPQVFLMDEPLSNLDAKLRVRMR-AELKK 184 (372)
T ss_dssp TCCHHHHHHHHHHHHHHHTCGGGTTCC--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTSCHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCC--cccCCHHHHHHHHHHHHHhc--CCCEEEECCCCccCCHHHHHHHH-HHHHH
Confidence 46788899997654443 24566654 4999999999 999999999999 9999999998 88888
Q ss_pred HHh-CCCeEEEEEecccccccChHHHHH
Q 025795 126 LKS-RNFNVCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 126 l~~-~~~~ii~v~l~d~~~~~d~~~~~s 152 (248)
+.+ .|.++++| +|...+...+++
T Consensus 185 l~~~~g~tvi~v----THd~~~a~~~ad 208 (372)
T 1g29_1 185 LQRQLGVTTIYV----THDQVEAMTMGD 208 (372)
T ss_dssp HHHHHTCEEEEE----ESCHHHHHHHCS
T ss_pred HHHhcCCEEEEE----CCCHHHHHHhCC
Confidence 865 48888766 455544444433
No 22
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.91 E-value=1.4e-24 Score=188.22 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------------CCCCCCcccChhhhhh----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------------ENFDYPVAMDIRELIS---------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------------~~~~y~~~~~i~e~i~---------- 58 (248)
-+++|+||||||||||+|+|+|+++|+ |+|.++|.+... +...+.+.++++|++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 105 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE 105 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHH
Confidence 468999999999999999999999999 999999876421 2222234567887764
Q ss_pred -HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCC-------EEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 59 -LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDD-------YLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 59 -~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~-------~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|+ ++|+||||+ ||+.++..+. ++++++.
T Consensus 106 ~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~~~~~~~~lllLDEPts~LD~~~~~~l~-~~l~~l~ 180 (249)
T 2qi9_C 106 LLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQ--ITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALS 180 (249)
T ss_dssp HHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHH--HCTTTCTTCCEEEESSTTTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCcCCCCCeEEEEECCcccCCHHHHHHHH-HHHHHHH
Confidence 46788899987654333 34566654 4899999999 999 999999999 9999999999 8999987
Q ss_pred hCCCeEEEEEecccccccChHHH
Q 025795 128 SRNFNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~d~~~~ 150 (248)
++|.+++++ +|.......+
T Consensus 181 ~~g~tviiv----tHd~~~~~~~ 199 (249)
T 2qi9_C 181 QQGLAIVMS----SHDLNHTLRH 199 (249)
T ss_dssp HTTCEEEEE----CSCHHHHHHH
T ss_pred hCCCEEEEE----eCCHHHHHHh
Confidence 668888665 5655433333
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.91 E-value=2e-24 Score=188.83 Aligned_cols=139 Identities=21% Similarity=0.182 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCCCC--------CcccChhhhhh------------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFDY--------PVAMDIRELIS------------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----~~~~~y--------~~~~~i~e~i~------------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ...++| .+..++++++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~ 113 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDP 113 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHH
Confidence 478999999999999999999999999999999997652 111222 22357776653
Q ss_pred ---HHHHHHHhCCC--CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCC
Q 025795 59 ---LEDVMEELGLG--PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 59 ---~~~~m~~~~L~--~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~ 130 (248)
++++++.+|+. +..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++.++|
T Consensus 114 ~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g 188 (266)
T 2yz2_A 114 VPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVH--EPDILILDEPLVGLDREGKTDLL-RIVEKWKTLG 188 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEcCccccCCHHHHHHHH-HHHHHHHHcC
Confidence 45788889987 443332 24566654 4899999999 999999999999 9999999999 8999987668
Q ss_pred CeEEEEEecccccccChHHH
Q 025795 131 FNVCAVYLLDSQFITDVTKF 150 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d~~~~ 150 (248)
.+++++ +|.......+
T Consensus 189 ~tii~v----tHd~~~~~~~ 204 (266)
T 2yz2_A 189 KTVILI----SHDIETVINH 204 (266)
T ss_dssp CEEEEE----CSCCTTTGGG
T ss_pred CEEEEE----eCCHHHHHHh
Confidence 888766 4555444443
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=7.2e-25 Score=193.01 Aligned_cols=129 Identities=15% Similarity=0.261 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--C-------CCCCC---------CcccChhhhhh------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--A-------ENFDY---------PVAMDIRELIS------ 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~-------~~~~y---------~~~~~i~e~i~------ 58 (248)
-+++|+||||||||||+|+|+|+++|++|+|.++|.++. . ..+.| .+.++++|++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 468999999999999999999999999999999997764 1 22333 11236776652
Q ss_pred --------------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 --------------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 --------------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
++++++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lLlLDEPts~LD~~~~~~l~-~ 202 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMG--QPQVLILDEPAAGLDFIARESLL-S 202 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEESTTTTCCHHHHHHHH-H
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhC--CCCEEEEeCCccccCHHHHHHHH-H
Confidence 45678888886544333 24566654 4899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeE--EEE
Q 025795 122 FVDHLKSRNFNV--CAV 136 (248)
Q Consensus 122 ll~~l~~~~~~i--i~v 136 (248)
+++++.++|.++ +++
T Consensus 203 ~l~~l~~~g~tv~~iiv 219 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYV 219 (279)
T ss_dssp HHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHCCCEEEEEEE
Confidence 899986557777 665
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.91 E-value=4.4e-24 Score=185.00 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+++|+|+ ++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 47899999999999999999998 78999999999976531 12333 23456666552
Q ss_pred ------------HHHHHHHhCCC-CCCchhhhHHh-hhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 59 ------------LEDVMEELGLG-PNGGLIYCMEH-LEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 59 ------------~~~~m~~~~L~-~~~~~~~~~~~-l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
++++++.+|+. ...... ... +++++ +++||++++. +|+++|+||||+ ||+.++..++ +
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~--~p~lllLDEPts~LD~~~~~~l~-~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVL--EPTYAVLDETDSGLDIDALKVVA-R 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHH--CCSEEEEECGGGTTCHHHHHHHH-H
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHc--CCCEEEEeCCCcCCCHHHHHHHH-H
Confidence 34567778884 332222 123 55554 4899999999 999999999999 9999999999 8
Q ss_pred HHHHHHhCCCeEEEE
Q 025795 122 FVDHLKSRNFNVCAV 136 (248)
Q Consensus 122 ll~~l~~~~~~ii~v 136 (248)
+++++.+.|.+++++
T Consensus 185 ~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 185 GVNAMRGPNFGALVI 199 (250)
T ss_dssp HHHHHCSTTCEEEEE
T ss_pred HHHHHHhcCCEEEEE
Confidence 999986668887766
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=1.1e-23 Score=182.82 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc-CCCCCCCCCCcccChhhhh--------------------hHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDYPVAMDIRELI--------------------SLED 61 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~-d~~~~~~~y~~~~~i~e~i--------------------~~~~ 61 (248)
-+++|+||||||||||+++|+|+++|++|+|.+... ....+...+.+..+++|++ .+++
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 368999999999999999999999999999974210 0001222222334554443 2566
Q ss_pred HHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEEE
Q 025795 62 VMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAVY 137 (248)
Q Consensus 62 ~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v~ 137 (248)
+++.+|+.+..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.++ |.+++++
T Consensus 112 ~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~~g~tvi~v- 185 (253)
T 2nq2_C 112 ALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIAS--ECKLILLDEPTSALDLANQDIVL-SLLIDLAQSQNMTVVFT- 185 (253)
T ss_dssp HHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHT--TCSEEEESSSSTTSCHHHHHHHH-HHHHHHHHTSCCEEEEE-
T ss_pred HHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEE-
Confidence 78888987644333 34566654 4899999999 999999999999 9999999999 889998765 8888766
Q ss_pred ecccccccChHHH
Q 025795 138 LLDSQFITDVTKF 150 (248)
Q Consensus 138 l~d~~~~~d~~~~ 150 (248)
+|.......+
T Consensus 186 ---tHd~~~~~~~ 195 (253)
T 2nq2_C 186 ---THQPNQVVAI 195 (253)
T ss_dssp ---ESCHHHHHHH
T ss_pred ---ecCHHHHHHh
Confidence 4655443333
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=8.4e-24 Score=183.01 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ....+++|++. +
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 115 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 115 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999976532 11222 11247888774 3
Q ss_pred HHHHHHhCCCCCCchh---------hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~~~~~~---------~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++.+++....... .....+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++.
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~ 192 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN--NPKILIFDEATSALDYESEHVIM-RNMHKIC 192 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT--CCSEEEECCCCSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHc
Confidence 4566666664211000 0013455554 4999999999 999999999999 9999999999 8888884
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+|.+++++
T Consensus 193 -~g~tviiv 200 (247)
T 2ff7_A 193 -KGRTVIII 200 (247)
T ss_dssp -TTSEEEEE
T ss_pred -CCCEEEEE
Confidence 58888766
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=7.3e-24 Score=185.37 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC--CCCCCceEEEeccCCCC--------CCCCC-------CcccChhhhhh-------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH--CETVRRTMHIVNLDPAA--------ENFDY-------PVAMDIRELIS------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~--l~~~~G~i~i~~~d~~~--------~~~~y-------~~~~~i~e~i~------- 58 (248)
-+++|+||||||||||+|+|+|+ ++|++|+|.++|.+... ..+.| .+.+++++++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 47899999999999999999999 47899999999976421 11222 22344444331
Q ss_pred ----------------HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHH
Q 025795 59 ----------------LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPV 118 (248)
Q Consensus 59 ----------------~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~ 118 (248)
++++++.+|+.. ...... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~LSgGq~QRv~iAraL~~--~p~lLlLDEPts~LD~~~~~~l 203 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV-NVGFSGGEKKRNDILQMAVL--EPELCILDESDSGLDIDALKVV 203 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT-TTTCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-ccCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHH
Confidence 456778888863 322221 12366654 4999999999 999999999999 999999999
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 025795 119 LRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 119 ~~~ll~~l~~~~~~ii~v 136 (248)
+ +++++++++|.+++++
T Consensus 204 ~-~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 204 A-DGVNSLRDGKRSFIIV 220 (267)
T ss_dssp H-HHHHTTCCSSCEEEEE
T ss_pred H-HHHHHHHhcCCEEEEE
Confidence 9 8888886567887665
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.89 E-value=3.7e-23 Score=181.34 Aligned_cols=129 Identities=18% Similarity=0.190 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhhH----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELISL---------- 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~~---------- 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| + ...+++|++..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHH
Confidence 4689999999999999999999999999999999976521 11222 1 12377776642
Q ss_pred ----------HHHHHHh--CCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 60 ----------EDVMEEL--GLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 60 ----------~~~m~~~--~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
.++++.+ |+....... ...+++++ +++||++|+. +|+++||||||+ ||+.++..++ ++++
T Consensus 126 ~~~~~~~~~~~~~l~~l~~gl~~~~~~~--~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~ 200 (271)
T 2ixe_A 126 ITAVAMESGAHDFISGFPQGYDTEVGET--GNQLSGGQRQAVALARALIR--KPRLLILDNATSALDAGNQLRVQ-RLLY 200 (271)
T ss_dssp HHHHHHHHTCHHHHHHSTTGGGSBCCGG--GTTSCHHHHHHHHHHHHHTT--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHhHHHHHHhhhcchhhhhcCC--cCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHH
Confidence 2233334 343322222 23466654 4899999999 999999999999 9999999999 8888
Q ss_pred HHHh-CCCeEEEE
Q 025795 125 HLKS-RNFNVCAV 136 (248)
Q Consensus 125 ~l~~-~~~~ii~v 136 (248)
++.+ .|.+++++
T Consensus 201 ~~~~~~g~tviiv 213 (271)
T 2ixe_A 201 ESPEWASRTVLLI 213 (271)
T ss_dssp HCTTTTTSEEEEE
T ss_pred HHHhhcCCEEEEE
Confidence 8854 47887766
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.89 E-value=2.7e-23 Score=179.24 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ ..++++++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~ 108 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDED 108 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhccCCCCHHH
Confidence 4789999999999999999999999999999999976521 22333 11 236777653
Q ss_pred HHHHHHHhCCCCCCchhh---------hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 LEDVMEELGLGPNGGLIY---------CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~---------~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
+.++++.+++.+...... ....+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~ 185 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR--NPKILMLDEATASLDSESESMVQ-KALDSL 185 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSCSSCSSSCCHHH-HHHHHH
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHHHh
Confidence 456777788765432110 112455554 4899999999 999999999999 9999999999 888888
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
. +|.+++++
T Consensus 186 ~-~~~tvi~v 194 (243)
T 1mv5_A 186 M-KGRTTLVI 194 (243)
T ss_dssp H-TTSEEEEE
T ss_pred c-CCCEEEEE
Confidence 6 58888766
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=4.9e-23 Score=179.86 Aligned_cols=124 Identities=14% Similarity=0.224 Sum_probs=96.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC----CCCCC-C-Cc----ccChhhhhh------------HHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA----AENFD-Y-PV----AMDIRELIS------------LED 61 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~----~~~~~-y-~~----~~~i~e~i~------------~~~ 61 (248)
+++|+||||||||||+|+|+|++ |++|+|.++|.+.. .+.+. | ++ ..+++|++. +++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~ 110 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLE 110 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHH
Confidence 68999999999999999999999 99999999986542 22344 4 22 457887764 457
Q ss_pred HHHHhCCC-CCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 62 VMEELGLG-PNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 62 ~m~~~~L~-~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++.+++. +..... ...+++++ +++||++++. +|+++|+||||+ ||+.++..+. ++++++.+ +++++
T Consensus 111 ~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~l~-~~L~~~~~---tviiv 181 (263)
T 2pjz_A 111 MLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALAS--QPEIVGLDEPFENVDAARRHVIS-RYIKEYGK---EGILV 181 (263)
T ss_dssp HHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHT--CCSEEEEECTTTTCCHHHHHHHH-HHHHHSCS---EEEEE
T ss_pred HHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCccccCHHHHHHHH-HHHHHhcC---cEEEE
Confidence 78889987 543332 34566654 4899999999 999999999999 9999999988 88887743 66554
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.88 E-value=2.6e-22 Score=174.91 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|++++ +|+|.++|.+... +.+.| ++ ..++++++. +
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 125 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHH
Confidence 47899999999999999999999987 8999999976521 12323 11 247887764 3
Q ss_pred HHHHHHhCCCCC------Cch---hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGPN------GGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~~------~~~---~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++.+++.+. +.. -.....+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++++++.
T Consensus 126 ~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~l~ 202 (260)
T 2ghi_A 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK--DPKIVIFDEATSSLDSKTEYLFQ-KAVEDLR 202 (260)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCCCTTCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHhc
Confidence 345555554221 000 00012455554 4899999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+ +.+++++
T Consensus 203 ~-~~tviiv 210 (260)
T 2ghi_A 203 K-NRTLIII 210 (260)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 4 7777665
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.87 E-value=1.7e-22 Score=180.02 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... ..+.| ....||++++. +
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~ 160 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEV 160 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHH
Confidence 4689999999999999999999999999999999987643 12222 12348888875 4
Q ss_pred HHHHHHhCCCCC------Cchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLGPN------GGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~~~------~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++.+. +-.. .....+++++ +++|||+++. +|++|||||||+ ||+.+...+. +.++++.
T Consensus 161 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~--~p~iLlLDEPts~LD~~~~~~i~-~~l~~l~ 237 (306)
T 3nh6_A 161 EAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK--APGIILLDEATSALDTSNERAIQ-ASLAKVC 237 (306)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEECCSSCCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh--CCCEEEEECCcccCCHHHHHHHH-HHHHHHc
Confidence 455555554321 0000 0012355554 4999999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+ +.++++|
T Consensus 238 ~-~~Tvi~i 245 (306)
T 3nh6_A 238 A-NRTTIVV 245 (306)
T ss_dssp T-TSEEEEE
T ss_pred C-CCEEEEE
Confidence 4 6777655
No 34
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=2.9e-22 Score=190.96 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCCCCcccChhhhhh-------------HHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFDYPVAMDIRELIS-------------LEDVMEELG 67 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~y~~~~~i~e~i~-------------~~~~m~~~~ 67 (248)
-+++|+||||||||||+++|+|+++|++|+|.+.+...+. +........++++++. ++++++.++
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~ 374 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN 374 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence 4789999999999999999999999999999887654321 2221223456666553 356677777
Q ss_pred CCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEEEeccccc
Q 025795 68 LGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQF 143 (248)
Q Consensus 68 L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~ 143 (248)
+.+..... ...+++++ +++||++|+. +|++||+||||+ ||+.++..++ ++++++.+ .|.++++| +|.
T Consensus 375 l~~~~~~~--~~~LSGGq~QRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd 445 (538)
T 3ozx_A 375 LHRLLESN--VNDLSGGELQKLYIAATLAK--EADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAVTFII----DHD 445 (538)
T ss_dssp GGGCTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSC
T ss_pred CHHHhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCC
Confidence 76554333 34566654 5999999999 999999999999 9999999999 99999864 58888766 566
Q ss_pred ccChHHHHHHH
Q 025795 144 ITDVTKFISGC 154 (248)
Q Consensus 144 ~~d~~~~~s~~ 154 (248)
+.....+++.+
T Consensus 446 l~~~~~~aDri 456 (538)
T 3ozx_A 446 LSIHDYIADRI 456 (538)
T ss_dssp HHHHHHHCSEE
T ss_pred HHHHHHhCCEE
Confidence 65555555433
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=173.65 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHhC-----
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELG----- 67 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~----- 67 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+.. +.+..++++++. .+++.+.++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 110 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHH
Confidence 4789999999999999999999999999999997721 111221 223567777764 233444333
Q ss_pred -CCCCCch---hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH---HHHhCCCeEEEE
Q 025795 68 -LGPNGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD---HLKSRNFNVCAV 136 (248)
Q Consensus 68 -L~~~~~~---~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~---~l~~~~~~ii~v 136 (248)
+.|.+.. ......+++++ +++||++++. +|+++|+||||+ ||+.++..++ +++. ++. +|.+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~~-~~~tviiv 185 (237)
T 2cbz_A 111 EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS--NADIYLFDDPLSAVDAHVGKHIF-ENVIGPKGML-KNKTRILV 185 (237)
T ss_dssp TTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH--CCSEEEEESTTTTSCHHHHHHHH-HHTTSTTSTT-TTSEEEEE
T ss_pred HhccccccccccCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCcccccCHHHHHHHH-HHHHHHHhhc-CCCEEEEE
Confidence 2222100 01123455554 4899999999 999999999999 9999999888 6663 332 47777665
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.86 E-value=5.7e-22 Score=169.57 Aligned_cols=129 Identities=19% Similarity=0.123 Sum_probs=89.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh---------HHHHHHHhCCCC--
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS---------LEDVMEELGLGP-- 70 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L~~-- 70 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+.+. +++|++. ..++++..++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~ 113 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 113 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHH
Confidence 3689999999999999999999999999999998721 11122222333 8888774 233444444421
Q ss_pred ----CCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025795 71 ----NGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (248)
Q Consensus 71 ----~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v 136 (248)
.+... .....+++++ +++||++++. +|+++|+||||+ ||+.++..++ +. ++++. .+.+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~--~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~-~~~tvi~v 186 (229)
T 2pze_A 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 186 (229)
T ss_dssp TTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS--CCSEEEEESTTTTSCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred HhCcccccccccCCCCcCCHHHHHHHHHHHHHhc--CCCEEEEECcccCCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 11000 0013455554 4899999999 999999999999 9999998888 54 44443 46777655
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.85 E-value=8e-22 Score=180.98 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-C-----cccChhhhhh---------HH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-P-----VAMDIRELIS---------LE 60 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~-----~~~~i~e~i~---------~~ 60 (248)
-+++|+||||||||||+++|+|+++ ++|+|.++|.+... ..+.| + ...++++++. +.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~ 126 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHH
Confidence 4689999999999999999999998 89999999987632 12222 1 1248888874 67
Q ss_pred HHHHHhCCCCCCchhhhH---------HhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh
Q 025795 61 DVMEELGLGPNGGLIYCM---------EHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 61 ~~m~~~~L~~~~~~~~~~---------~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
++++.+++.+.......- ..+++++ +++||++|+. +|+++||||||+ ||+..+..+. +.++++.
T Consensus 127 ~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~--~P~lLLLDEPts~LD~~~~~~l~-~~l~~~~- 202 (390)
T 3gd7_A 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS--KAKILLLDEPSAHLDPVTYQIIR-RTLKQAF- 202 (390)
T ss_dssp HHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT--TCCEEEEESHHHHSCHHHHHHHH-HHHHTTT-
T ss_pred HHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHh-
Confidence 788888886432222110 0156654 4999999999 999999999999 9999998888 7777753
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
.+.+++++
T Consensus 203 ~~~tvi~v 210 (390)
T 3gd7_A 203 ADCTVILC 210 (390)
T ss_dssp TTSCEEEE
T ss_pred CCCEEEEE
Confidence 46777766
No 38
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.85 E-value=3.1e-21 Score=186.16 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC--CCCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP--AAENFDYPVAMDIRELIS------------LEDVMEELGL 68 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~--~~~~~~y~~~~~i~e~i~------------~~~~m~~~~L 68 (248)
-+++|+||||||||||+++|+|+++|++|+|.+. ... -.+.....+..++++++. +.++++.+++
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l 461 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999998751 111 012222234456666542 4567889999
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025795 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI 144 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~ 144 (248)
.+..... ...+++++ +++||++|+. +|+++||||||+ ||+.++..+. ++++++. +.|.++++| +|..
T Consensus 462 ~~~~~~~--~~~LSGGe~QRv~iAraL~~--~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~v----sHd~ 532 (607)
T 3bk7_A 462 IDLYDRN--VEDLSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 532 (607)
T ss_dssp TTTTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCEEEEE----CSCH
T ss_pred chHhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 7654443 34566654 4999999999 999999999999 9999999999 9999986 468888766 5655
Q ss_pred cChHHHHHH
Q 025795 145 TDVTKFISG 153 (248)
Q Consensus 145 ~d~~~~~s~ 153 (248)
.....+++.
T Consensus 533 ~~~~~~adr 541 (607)
T 3bk7_A 533 LMIDYVSDR 541 (607)
T ss_dssp HHHHHHCSE
T ss_pred HHHHHhCCE
Confidence 544544443
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.84 E-value=3.7e-21 Score=184.82 Aligned_cols=130 Identities=17% Similarity=0.115 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+.|++|++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 449 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHH
Confidence 4689999999999999999999999999999999987632 12222 11247888774
Q ss_pred HHHHHHHhCCCCC------Cchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 LEDVMEELGLGPN------GGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ~~~~m~~~~L~~~------~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++..++.+. |-.. .....+++|+ +++|||++.. +|+++|+||||+ ||+.+...+. +.++++
T Consensus 450 ~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b60_A 450 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR--DSPILILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_dssp HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH--CCSEEEEETTTSSCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 3445555555321 0000 0012355554 4899999999 999999999999 9999999988 888888
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
.+ |.+++++
T Consensus 527 ~~-~~tvi~i 535 (582)
T 3b60_A 527 QK-NRTSLVI 535 (582)
T ss_dssp HT-TSEEEEE
T ss_pred hC-CCEEEEE
Confidence 64 7787666
No 40
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=2.9e-21 Score=184.11 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE---------EEeccCCC---------CCCCCC-------Ccc---cChh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------AENFDY-------PVA---MDIR 54 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i---------~i~~~d~~---------~~~~~y-------~~~---~~i~ 54 (248)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+.. ...+.+ .+. .+++
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 4689999999999999999999999999984 23343211 001111 111 1565
Q ss_pred hhh-------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 55 ELI-------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 55 e~i-------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
+++ .++++++.+|+....... ...+++++ +++||++++. +|++|||||||+ ||+.++..++ ++++
T Consensus 128 e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 202 (538)
T 1yqt_A 128 ELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLR--NATFYFFDEPSSYLDIRQRLNAA-RAIR 202 (538)
T ss_dssp HHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHHH
T ss_pred HHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 554 278899999997654433 34566654 4999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025795 125 HLKSRNFNVCAV 136 (248)
Q Consensus 125 ~l~~~~~~ii~v 136 (248)
++++.|.++++|
T Consensus 203 ~l~~~g~tvi~v 214 (538)
T 1yqt_A 203 RLSEEGKSVLVV 214 (538)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHhcCCEEEEE
Confidence 997778888776
No 41
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=2.4e-21 Score=184.61 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE-----------EEeccCCCC----------------CCCCCCc---ccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM-----------HIVNLDPAA----------------ENFDYPV---AMD 52 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i-----------~i~~~d~~~----------------~~~~y~~---~~~ 52 (248)
-+++|+||||||||||+|+|+|+++|++|++ .+.|.+... +.+.+.+ ..+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Confidence 5799999999999999999999999999988 344433210 1111111 124
Q ss_pred hhhhhh-------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH
Q 025795 53 IRELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF 122 (248)
Q Consensus 53 i~e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l 122 (248)
+++.+. ++++++.+++....... ...+++++ +++||++++. +|+++||||||+ ||+.++..+. ++
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~--~p~illlDEPts~LD~~~~~~l~-~~ 180 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLR--EADVYIFDQPSSYLDVRERMNMA-KA 180 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HH
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HH
Confidence 555442 78899999997654433 34566654 4999999999 999999999999 9999999998 99
Q ss_pred HHHHHhCCCeEEEE
Q 025795 123 VDHLKSRNFNVCAV 136 (248)
Q Consensus 123 l~~l~~~~~~ii~v 136 (248)
++++++ |.++++|
T Consensus 181 l~~l~~-g~tii~v 193 (538)
T 3ozx_A 181 IRELLK-NKYVIVV 193 (538)
T ss_dssp HHHHCT-TSEEEEE
T ss_pred HHHHhC-CCEEEEE
Confidence 999965 8888766
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.84 E-value=4.4e-21 Score=184.29 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC-Cc-----ccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY-PV-----AMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y-~~-----~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ++ +.|++|++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 449 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQ 449 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHH
Confidence 3689999999999999999999999999999999977532 22333 11 237777764
Q ss_pred HHHHHHHhCCCCCCchh---------hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 59 LEDVMEELGLGPNGGLI---------YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~---------~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
++++++..++.+..... .....+++|+ +++|||++.. +|+++|+||||+ ||+.+...+. +.++++
T Consensus 450 ~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~ 526 (582)
T 3b5x_A 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR--DAPVLILDEATSALDTESERAIQ-AALDEL 526 (582)
T ss_pred HHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHH
Confidence 34556666553210000 0012355554 4899999999 999999999999 9999999988 888888
Q ss_pred HhCCCeEEEE
Q 025795 127 KSRNFNVCAV 136 (248)
Q Consensus 127 ~~~~~~ii~v 136 (248)
.+ |.+++++
T Consensus 527 ~~-~~tvi~i 535 (582)
T 3b5x_A 527 QK-NKTVLVI 535 (582)
T ss_pred cC-CCEEEEE
Confidence 54 7787665
No 43
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.84 E-value=2.8e-21 Score=186.49 Aligned_cols=129 Identities=20% Similarity=0.239 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE---------EEeccCCC---------C-------CCCCCCc---ccChh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM---------HIVNLDPA---------A-------ENFDYPV---AMDIR 54 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i---------~i~~~d~~---------~-------~~~~y~~---~~~i~ 54 (248)
-+++|+||||||||||+++|+|+++|++|++ .+.|.+.. . +.+...+ ..+++
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 4689999999999999999999999999985 23343221 0 1111111 12566
Q ss_pred hhhh-------HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 55 ELIS-------LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 55 e~i~-------~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
+++. ++++++.+|+....... ...+++++ +++||++|+. +|++|||||||+ ||+.++..++ ++++
T Consensus 198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~--~P~lLlLDEPTs~LD~~~~~~l~-~~L~ 272 (607)
T 3bk7_A 198 ELLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLR--KAHFYFFDEPSSYLDIRQRLKVA-RVIR 272 (607)
T ss_dssp HHHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHHHH-HHHH
T ss_pred HHhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhc--CCCEEEEECCcccCCHHHHHHHH-HHHH
Confidence 6652 78899999997654333 34566654 4999999999 999999999999 9999999999 9999
Q ss_pred HHHhCCCeEEEE
Q 025795 125 HLKSRNFNVCAV 136 (248)
Q Consensus 125 ~l~~~~~~ii~v 136 (248)
++.+.|.++++|
T Consensus 273 ~l~~~g~tvIiv 284 (607)
T 3bk7_A 273 RLANEGKAVLVV 284 (607)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHhcCCEEEEE
Confidence 997778888776
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.84 E-value=3e-21 Score=183.96 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC--CCCCCCCcccChhhhhh------------HHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA--AENFDYPVAMDIRELIS------------LEDVMEELGL 68 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~--~~~~~y~~~~~i~e~i~------------~~~~m~~~~L 68 (248)
-+++|+||||||||||+++|+|+++|++|+|.+. ...+ .+.....+..++.+++. ++++++.+++
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l 391 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999998751 1110 12222224456665542 3455667777
Q ss_pred CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc
Q 025795 69 GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI 144 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~ 144 (248)
.+..... ...++++. +++||++++. +|++||+||||+ ||+.++..+. ++++++. +.|.++++| +|..
T Consensus 392 ~~~~~~~--~~~LSGGe~qrv~lAraL~~--~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~tvi~v----sHd~ 462 (538)
T 1yqt_A 392 IDLYDRE--VNELSGGELQRVAIAATLLR--DADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKTALVV----EHDV 462 (538)
T ss_dssp GGGTTSB--GGGCCHHHHHHHHHHHHHTS--CCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----CSCH
T ss_pred hhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCEEEEE----eCCH
Confidence 6443332 34566654 4999999999 999999999999 9999999999 9999986 358888766 5666
Q ss_pred cChHHHHHHH
Q 025795 145 TDVTKFISGC 154 (248)
Q Consensus 145 ~d~~~~~s~~ 154 (248)
.....+++.+
T Consensus 463 ~~~~~~~drv 472 (538)
T 1yqt_A 463 LMIDYVSDRL 472 (538)
T ss_dssp HHHHHHCSEE
T ss_pred HHHHHhCCEE
Confidence 5555555433
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.83 E-value=1.4e-20 Score=181.21 Aligned_cols=130 Identities=22% Similarity=0.188 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.+... +.+.| ..+.|++|++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 450 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA 450 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCH
Confidence 4689999999999999999999999999999999987632 12222 11347887773
Q ss_pred --HHHHHHHhCCCC------CCchhh---hHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHH
Q 025795 59 --LEDVMEELGLGP------NGGLIY---CMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVD 124 (248)
Q Consensus 59 --~~~~m~~~~L~~------~~~~~~---~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~ 124 (248)
++++++..++.+ .+-... ....+++++ +++|||++.. +|+++|+||||+ ||+.+.+.+. +.++
T Consensus 451 ~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~ 527 (595)
T 2yl4_A 451 EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK--NPKILLLDEATSALDAENEYLVQ-EALD 527 (595)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH--CCSEEEEECCCSSCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECcccCCCHHHHHHHH-HHHH
Confidence 345666666531 110000 012355554 4899999999 999999999999 9999999988 8888
Q ss_pred HHHhCCCeEEEE
Q 025795 125 HLKSRNFNVCAV 136 (248)
Q Consensus 125 ~l~~~~~~ii~v 136 (248)
++.+ +.+++++
T Consensus 528 ~~~~-~~tvi~i 538 (595)
T 2yl4_A 528 RLMD-GRTVLVI 538 (595)
T ss_dssp HHHT-TSEEEEE
T ss_pred HHhc-CCEEEEE
Confidence 8865 7777665
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.83 E-value=3.8e-21 Score=170.13 Aligned_cols=129 Identities=19% Similarity=0.108 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC-CCCCCCCCCcccChhhhhh--------HHHHHHHhCCCC---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD-PAAENFDYPVAMDIRELIS--------LEDVMEELGLGP--- 70 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d-~~~~~~~y~~~~~i~e~i~--------~~~~m~~~~L~~--- 70 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.- ...+...+.+ .+++|++. +.++++..++..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 4689999999999999999999999999999987620 1112222223 37888763 233444444421
Q ss_pred ---CCch---hhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHH-HHHHHhCCCeEEEE
Q 025795 71 ---NGGL---IYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNF-VDHLKSRNFNVCAV 136 (248)
Q Consensus 71 ---~~~~---~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~l-l~~l~~~~~~ii~v 136 (248)
.+.. ......+++++ +++||++++. +|+++|+||||+ ||+.++..++ ++ ++++. .|.+++++
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~--~p~lllLDEPts~LD~~~~~~i~-~~ll~~~~-~~~tviiv 215 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYK--DADLYLLDSPFGYLDVLTEKEIF-ESCVCKLM-ANKTRILV 215 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHS--CCSEEEEESTTTTCCHHHHHHHH-HHCCCCCT-TTSEEEEE
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHC--CCCEEEEECCcccCCHHHHHHHH-HHHHHHhh-CCCEEEEE
Confidence 1000 00012455554 4899999999 999999999999 9999998888 54 44443 47777665
No 47
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.83 E-value=1.7e-20 Score=180.02 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| ..+.|++|++. +
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 447 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987632 12222 12348898885 3
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.|-.. .....+++++ +++|||++.. +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus 448 ~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 524 (578)
T 4a82_A 448 VEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN--NPPILILDEATSALDLESESIIQ-EALDVLS 524 (578)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH--CCSEEEEESTTTTCCHHHHHHHH-HHHHHHT
T ss_pred HHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc--CCCEEEEECccccCCHHHHHHHH-HHHHHHc
Confidence 4455554442 111000 0012355554 4899999999 999999999999 9999998888 8888874
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
++.+++++
T Consensus 525 -~~~t~i~i 532 (578)
T 4a82_A 525 -KDRTTLIV 532 (578)
T ss_dssp -TTSEEEEE
T ss_pred -CCCEEEEE
Confidence 46777655
No 48
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=3.2e-21 Score=185.86 Aligned_cols=135 Identities=15% Similarity=0.179 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCC------CCcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD------YPVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~------y~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.|... +.+. +..+.|++|++. +
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 461 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 1122 222458888875 3
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.|-.. .....+++|+ +++|||++.. +|+++|+||||+ ||+.+...+. +.++++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 538 (598)
T 3qf4_B 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA--NPKILILDEATSNVDTKTEKSIQ-AAMWKLM 538 (598)
T ss_dssp HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT--CCSEEEECCCCTTCCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHHHc
Confidence 3344333332 111000 0012355554 4899999999 999999999999 9999999998 8888885
Q ss_pred hCCCeEEEEEeccccccc
Q 025795 128 SRNFNVCAVYLLDSQFIT 145 (248)
Q Consensus 128 ~~~~~ii~v~l~d~~~~~ 145 (248)
+|.++++| +|...
T Consensus 539 -~~~t~i~i----tH~l~ 551 (598)
T 3qf4_B 539 -EGKTSIII----AHRLN 551 (598)
T ss_dssp -TTSEEEEE----SCCTT
T ss_pred -CCCEEEEE----ecCHH
Confidence 57888766 45553
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.5e-20 Score=181.25 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceE------EEeccCCCCCCCCCCcccChhhhhh------------HHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTM------HIVNLDPAAENFDYPVAMDIRELIS------------LEDVME 64 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i------~i~~~d~~~~~~~y~~~~~i~e~i~------------~~~~m~ 64 (248)
-+++|+||||||||||+++|+|+++|++|+. .+..+ ........++++++. ++++++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q-----~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~ 453 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ-----KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVK 453 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECS-----SCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecc-----cccccCCccHHHHHHHHhhcccccHHHHHHHHH
Confidence 3689999999999999999999999999962 22211 111112235555432 567889
Q ss_pred HhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecc
Q 025795 65 ELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLD 140 (248)
Q Consensus 65 ~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d 140 (248)
.+++.+..... ...++++ ++++||++|+. +|++||+||||+ ||+.++..++ ++++++. +.|.++++|
T Consensus 454 ~l~l~~~~~~~--~~~LSGGqkQRv~iAraL~~--~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g~tviiv---- 524 (608)
T 3j16_B 454 PLRIDDIIDQE--VQHLSGGELQRVAIVLALGI--PADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNKKTAFIV---- 524 (608)
T ss_dssp HHTSTTTSSSB--SSSCCHHHHHHHHHHHHTTS--CCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHTCEEEEE----
T ss_pred HcCChhhhcCC--hhhCCHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCCCEEEEE----
Confidence 99998765443 2346665 45999999999 999999999999 9999999999 9999985 458888766
Q ss_pred cccccChHHHHHHHH
Q 025795 141 SQFITDVTKFISGCM 155 (248)
Q Consensus 141 ~~~~~d~~~~~s~~l 155 (248)
+|.+.....+++.++
T Consensus 525 tHdl~~~~~~aDrvi 539 (608)
T 3j16_B 525 EHDFIMATYLADKVI 539 (608)
T ss_dssp CSCHHHHHHHCSEEE
T ss_pred eCCHHHHHHhCCEEE
Confidence 566655555555443
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=4e-20 Score=177.89 Aligned_cols=130 Identities=17% Similarity=0.188 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------~ 59 (248)
-+++|+||||||||||+++|+|+++|++|+|.++|.|... +.+.| ..+.|++|++. +
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~ 449 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEI 449 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHH
Confidence 4689999999999999999999999999999999987642 11222 12347888875 3
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.|-.. .....+++++ +++|||++.. +|+++|+||||+ ||+.+.+.+. +.++++.
T Consensus 450 ~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~--~p~illlDEpts~LD~~~~~~i~-~~l~~~~ 526 (587)
T 3qf4_A 450 VEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK--KPKVLILDDCTSSVDPITEKRIL-DGLKRYT 526 (587)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT--CCSEEEEESCCTTSCHHHHHHHH-HHHHHHS
T ss_pred HHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc--CCCEEEEECCcccCCHHHHHHHH-HHHHHhC
Confidence 3344443331 111000 0012355554 4899999999 999999999999 9999999999 7788874
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+|.|+++|
T Consensus 527 -~~~tvi~i 534 (587)
T 3qf4_A 527 -KGCTTFII 534 (587)
T ss_dssp -TTCEEEEE
T ss_pred -CCCEEEEE
Confidence 47787666
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-20 Score=182.26 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE-----------EeccCCCC-------CCC------CCCc---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH-----------IVNLDPAA-------ENF------DYPV--------- 49 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~-----------i~~~d~~~-------~~~------~y~~--------- 49 (248)
-+++|+||||||||||+|+|+|+++|++|+|. +.|.+... +.+ .|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 37899999999999999999999999999972 22221100 000 0100
Q ss_pred ccChhhhh---------hHHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHH
Q 025795 50 AMDIRELI---------SLEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVP 117 (248)
Q Consensus 50 ~~~i~e~i---------~~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~ 117 (248)
..++.+.+ .++++++.+|+....... ...+++++ +++||++++. +|+++||||||+ ||+.++..
T Consensus 184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~--~p~llllDEPts~LD~~~~~~ 259 (608)
T 3j16_B 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQ--EADVYMFDEPSSYLDVKQRLN 259 (608)
T ss_dssp SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHS--CCSEEEEECTTTTCCHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHh--CCCEEEEECcccCCCHHHHHH
Confidence 01222222 377889999997654333 34566654 4999999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 025795 118 VLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 118 ~~~~ll~~l~~~~~~ii~v 136 (248)
++ +++++++++|.++++|
T Consensus 260 l~-~~l~~l~~~g~tvi~v 277 (608)
T 3j16_B 260 AA-QIIRSLLAPTKYVICV 277 (608)
T ss_dssp HH-HHHHGGGTTTCEEEEE
T ss_pred HH-HHHHHHHhCCCEEEEE
Confidence 98 9999998778888766
No 52
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.77 E-value=8.2e-18 Score=144.54 Aligned_cols=233 Identities=22% Similarity=0.411 Sum_probs=159.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
..++++.|+.|+||||++..++..+. .+.++.+.+.||+....++.+..++++..+.++++.. ++++++....+.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESYDRL 91 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecHHHH
Confidence 47889999999999999999998887 6778999999998777777666777777777777766 677776555443333
Q ss_pred hhhHHHHHHHHHccCC-CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHH
Q 025795 82 EDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 160 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~-~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~ 160 (248)
.... .++...+.... +.+++|+|.|++.+......+...+.+.+ .. .++++++|+....++..+..........
T Consensus 92 ~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~ 166 (262)
T 1yrb_A 92 MEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLI 166 (262)
T ss_dssp HTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHH
Confidence 2222 33333332210 46999999999988776555443333333 22 5567789988888888776554444444
Q ss_pred HHhhCCCeeeeecccccccch--hhhhhhcccCHHHHHHHhhc-ccchhHHHHHHHHHHHhhhcCC-eeeEEeeccccH-
Q 025795 161 MVQLELPHVNILSKMDLVTNK--KEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKES- 235 (248)
Q Consensus 161 ~~~~~~p~~~vlsk~dll~~~--~~l~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~i~~~~~-~~f~~l~~~~~~- 235 (248)
....+.|.+.|+||+|+.... ..+.+++. +.+.+.+.+.. +...+|.++ ++++++++++. ..|+|++..+++
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLSAKTREG 243 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECCTTTCTT
T ss_pred hcccCCCeEEEEecccccccccHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEEecCccc
Confidence 456789999999999997654 12233332 33333333321 233466665 88899999887 489999999988
Q ss_pred -HHHHHHHhh
Q 025795 236 -RRLLSQIMK 244 (248)
Q Consensus 236 -~~~~~~id~ 244 (248)
..++..|.+
T Consensus 244 i~~l~~~i~~ 253 (262)
T 1yrb_A 244 FEDLETLAYE 253 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 788877765
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=6.9e-18 Score=164.45 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCcHHHHH---------------------HHHHhCCCCC-------CceEEEeccCCCC---CCCC-----
Q 025795 3 YAQLVIGPAGSGKSTYC---------------------SSLYRHCETV-------RRTMHIVNLDPAA---ENFD----- 46 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~---------------------~~l~g~l~~~-------~G~i~i~~~d~~~---~~~~----- 46 (248)
-+++|+||||||||||+ +++.|+.+|+ .|.+.+.+.+... ..+.
T Consensus 45 e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~ 124 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEI 124 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTC
T ss_pred CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeech
Confidence 46899999999999998 8888988888 4555555543211 0000
Q ss_pred ---------------------CCcccChhhhhhH------------------------HHHHHHhCCCCCCchhhhHHhh
Q 025795 47 ---------------------YPVAMDIRELISL------------------------EDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 47 ---------------------y~~~~~i~e~i~~------------------------~~~m~~~~L~~~~~~~~~~~~l 81 (248)
..+.+++++++.. .++++.+|+++.....+ ...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-~~~L 203 (670)
T 3ux8_A 125 YDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRS-AGTL 203 (670)
T ss_dssp C-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTTCB-GGGS
T ss_pred hhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCC-cccC
Confidence 0112345544321 12377788875421111 2456
Q ss_pred hhhH--HHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 82 EDNL--DDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 82 ~~~~--~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++ +++||++|+. +|+ +||+||||+ ||+.++..++ +++++++++|.++++|
T Consensus 204 SGGe~QRv~iArAL~~--~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 204 SGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIVV 260 (670)
T ss_dssp CHHHHHHHHHHHHHHT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHhh--CCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCEEEEE
Confidence 6654 4999999999 888 999999999 9999999999 9999998778888776
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.74 E-value=5.7e-18 Score=175.76 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCC------CCCcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENF------DYPVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~------~y~~~~~i~e~i~----------~ 59 (248)
-.++|+||+||||||++++|.|+++|++|+|.++|.|... +.+ ++-.+-||+|+|. +
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v 524 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEM 524 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHH
T ss_pred cEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHH
Confidence 3689999999999999999999999999999999987643 122 3334568999885 3
Q ss_pred HHHHHHhCC---------------CCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHH
Q 025795 60 EDVMEELGL---------------GPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRN 121 (248)
Q Consensus 60 ~~~m~~~~L---------------~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ 121 (248)
.++++..++ |++| ..+++|+ |++||||+.. +|+++||||||+ ||..+.+.+. +
T Consensus 525 ~~a~~~a~l~~~i~~lp~G~~T~vGe~G------~~LSGGQkQRiaiARAl~~--~~~IliLDE~tSaLD~~te~~i~-~ 595 (1321)
T 4f4c_A 525 VAACKMANAEKFIKTLPNGYNTLVGDRG------TQLSGGQKQRIAIARALVR--NPKILLLDEATSALDAESEGIVQ-Q 595 (1321)
T ss_dssp HHHHHHTTCHHHHHHSTTTTSSEESSSS------CCCCHHHHHHHHHHHHHTT--CCSEEEEESTTTTSCTTTHHHHH-H
T ss_pred HHHHHHccchhHHHcCCCCCccEecCCC------CCCCHHHHHHHHHHHHHcc--CCCEEEEecccccCCHHHHHHHH-H
Confidence 444444332 2333 2355554 5899999999 999999999999 9999987777 7
Q ss_pred HHHHHHhCCCeEEEE-Eec
Q 025795 122 FVDHLKSRNFNVCAV-YLL 139 (248)
Q Consensus 122 ll~~l~~~~~~ii~v-~l~ 139 (248)
.++++.+ |+|+++| |-+
T Consensus 596 ~l~~~~~-~~T~iiiaHrl 613 (1321)
T 4f4c_A 596 ALDKAAK-GRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHT-TSEEEEECSCT
T ss_pred HHHHHhC-CCEEEEEcccH
Confidence 7787754 6676655 433
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=3.9e-18 Score=176.98 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------- 58 (248)
-.+||+||+||||||++++|.|++.|++|+|.++|.|... +.+.| -.+-|||+++.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ 1185 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMA 1185 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHH
Confidence 3689999999999999999999999999999999998753 22333 22347888863
Q ss_pred -HHHHHHHhCCC------CCCchhhh---HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 -LEDVMEELGLG------PNGGLIYC---MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 -~~~~m~~~~L~------~~~~~~~~---~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.++++..++. |.|-.... -..+++|+ +.+||||+.. +|++|||||||+ ||..+.+.+. +.+++
T Consensus 1186 ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr--~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~ 1262 (1321)
T 4f4c_A 1186 QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEKVVQ-EALDR 1262 (1321)
T ss_dssp HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS--CCSEEEEESCCCSTTSHHHHHHH-HHHTT
T ss_pred HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh--CCCEEEEeCccccCCHHHHHHHH-HHHHH
Confidence 45556555542 11100000 02245544 4899999999 999999999999 9999987777 66666
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+. .+.|+++|
T Consensus 1263 ~~-~~~TvI~I 1272 (1321)
T 4f4c_A 1263 AR-EGRTCIVI 1272 (1321)
T ss_dssp TS-SSSEEEEE
T ss_pred Hc-CCCEEEEe
Confidence 53 47787766
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.73 E-value=5e-18 Score=175.80 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCC------CCcccChhhhhh----------H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFD------YPVAMDIRELIS----------L 59 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~------y~~~~~i~e~i~----------~ 59 (248)
-.++|+||||||||||+++|.|+++|++|+|.++|.|... +.+. +..+-||+|++. +
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~ 496 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEI 496 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHH
Confidence 4689999999999999999999999999999999987532 1122 222348888885 2
Q ss_pred HHHHHHhCCC------CCCchh---hhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH
Q 025795 60 EDVMEELGLG------PNGGLI---YCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK 127 (248)
Q Consensus 60 ~~~m~~~~L~------~~~~~~---~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~ 127 (248)
.++++..++. |.+... .....+++++ +++|||++.. +|+++||||||+ ||+.+.+.+. +.++.+.
T Consensus 497 ~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~--~p~iliLDEpts~LD~~~~~~i~-~~l~~~~ 573 (1284)
T 3g5u_A 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR--NPKILLLDEATSALDTESEAVVQ-AALDKAR 573 (1284)
T ss_dssp HHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH--CCSEEEEESTTCSSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHc
Confidence 3333333221 111000 0012355554 4899999999 999999999999 9999988777 7777764
Q ss_pred hCCCeEEEE
Q 025795 128 SRNFNVCAV 136 (248)
Q Consensus 128 ~~~~~ii~v 136 (248)
+|.|+++|
T Consensus 574 -~~~t~i~i 581 (1284)
T 3g5u_A 574 -EGRTTIVI 581 (1284)
T ss_dssp -TTSEEEEE
T ss_pred -CCCEEEEE
Confidence 47777766
No 57
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=8.6e-18 Score=174.03 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------CCCCC------CcccChhhhhh-----------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------ENFDY------PVAMDIRELIS----------- 58 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------~~~~y------~~~~~i~e~i~----------- 58 (248)
-+++|+||||||||||+++|.|+++|++|+|.++|.|... ..+.| ..+.||+|++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~ 1139 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE 1139 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHH
Confidence 4689999999999999999999999999999999988642 22333 12457888873
Q ss_pred -HHHHHHHhCCC------CCCchhh---hHHhhhhh--HHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH
Q 025795 59 -LEDVMEELGLG------PNGGLIY---CMEHLEDN--LDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH 125 (248)
Q Consensus 59 -~~~~m~~~~L~------~~~~~~~---~~~~l~~~--~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~ 125 (248)
+.+.++..++. |.+-... .-..+++| ++++|||++.. +|++||+||||+ ||+.+.+.+. +.+++
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~--~p~iLiLDEpTs~lD~~~~~~i~-~~l~~ 1216 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR--QPHILLLDEATSALDTESEKVVQ-EALDK 1216 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH--CCSSEEEESCSSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc--CCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 33444444432 1110000 00235554 44999999999 999999999999 9999998888 88877
Q ss_pred HHhCCCeEEEE
Q 025795 126 LKSRNFNVCAV 136 (248)
Q Consensus 126 l~~~~~~ii~v 136 (248)
+ ..|.++++|
T Consensus 1217 ~-~~~~tvi~i 1226 (1284)
T 3g5u_A 1217 A-REGRTCIVI 1226 (1284)
T ss_dssp H-SSSSCEEEE
T ss_pred h-CCCCEEEEE
Confidence 6 457888766
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=1.4e-18 Score=146.63 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc--CC--CCCCCCCCcccChhhhh-hH-HHHHHHh-CCCCCCchh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL--DP--AAENFDYPVAMDIRELI-SL-EDVMEEL-GLGPNGGLI 75 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~--d~--~~~~~~y~~~~~i~e~i-~~-~~~m~~~-~L~~~~~~~ 75 (248)
-+++|+||||||||||+++|+|+ +|++|+|..... +. ....+.|.+. +.++++ .. ......+ +.... ...
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q-~~~enl~~~~~~~~~~~~~~~~~-~~~ 99 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPG-TLNEKIDPYLRPLHDALRDMVEP-EVI 99 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------CTTTHHHHHHHTTTSCT-THH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecC-CHHHHHHHHHHHHHHHHHHhccH-HHH
Confidence 36899999999999999999999 999999854211 11 1234555221 113333 11 0011111 10010 111
Q ss_pred -hhHHh-hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795 76 -YCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVY 137 (248)
Q Consensus 76 -~~~~~-l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (248)
..++. +.++++++||++++. +|+++|+||||+- ++..+. ++++++ +.|.++++.|
T Consensus 100 ~~~l~~glGq~qrv~lAraL~~--~p~lllLDEPts~---~~~~l~-~~l~~l-~~g~tiivtH 156 (208)
T 3b85_A 100 PKLMEAGIVEVAPLAYMRGRTL--NDAFVILDEAQNT---TPAQMK-MFLTRL-GFGSKMVVTG 156 (208)
T ss_dssp HHHHHTTSEEEEEGGGGTTCCB--CSEEEEECSGGGC---CHHHHH-HHHTTB-CTTCEEEEEE
T ss_pred HHHHHhCCchHHHHHHHHHHhc--CCCEEEEeCCccc---cHHHHH-HHHHHh-cCCCEEEEEC
Confidence 00111 122344899999999 9999999999987 677777 777777 5677877334
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=1.2e-17 Score=167.73 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=50.8
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
++++++.+|+.+..........+++|+ ++.||++++. +|++|||||||+ ||+.+...+. +.+++ .+.++++
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~--~P~LLLLDEPT~gLD~~s~~~L~-~~L~~---~g~tVIi 953 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQ--RPHLIVLDEPTNYLDRDSLGALS-KALKE---FEGGVII 953 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTT--CCSEEEEECGGGTCCHHHHHHHH-HHHHS---CSSEEEE
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHh--CCCEEEEECCccCCCHHHHHHHH-HHHHH---hCCEEEE
Confidence 567788888864210111134566664 4899999999 999999999999 9999987766 55443 3567765
Q ss_pred E
Q 025795 136 V 136 (248)
Q Consensus 136 v 136 (248)
|
T Consensus 954 I 954 (986)
T 2iw3_A 954 I 954 (986)
T ss_dssp E
T ss_pred E
Confidence 5
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.68 E-value=1.1e-16 Score=160.66 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CCC--C--CCceEEEeccCCCCCCCCCCcccChhhhhh---------HHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR-HCE--T--VRRTMHIVNLDPAAENFDYPVAMDIRELIS---------LEDVMEELGL 68 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g-~l~--~--~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~---------~~~~m~~~~L 68 (248)
-+++|+||||||||||+|+|+| .+. + ....+.+...++ ....+.+++.+++. +.++++.+|+
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~----~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDI----DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCC----CCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccc----cccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 4689999999999999999994 221 0 011122221111 11234556776653 6678899998
Q ss_pred CC-CCchhhhHHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 69 GP-NGGLIYCMEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 69 ~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.. .... ....+++|+ +++||++++. +|++|||||||+ ||+.++..+. +++++ .|.+++++
T Consensus 538 ~~~~~~~--~~~~LSGGqkQRvaLArAL~~--~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~tvIiv 601 (986)
T 2iw3_A 538 TDEMIAM--PISALSGGWKMKLALARAVLR--NADILLLDEPTNHLDTVNVAWLV-NYLNT---CGITSITI 601 (986)
T ss_dssp CHHHHHS--BGGGCCHHHHHHHHHHHHHHT--TCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSEEEEE
T ss_pred ChhhhcC--CcccCCHHHHHHHHHHHHHhc--CCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCEEEEE
Confidence 52 2111 134566664 4899999999 999999999999 9999998888 77776 47777766
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.67 E-value=8.2e-18 Score=136.99 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=41.4
Q ss_pred hHHHHHHHHHccCCCCCEEEEeCCCc-cCHH----------------hHHHHHHHHHHHHHhCCCeEEEE
Q 025795 84 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELF----------------THVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 84 ~~~~~La~~l~~~~~p~~lilDEPt~-LD~~----------------~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++++||+++.. +|+++++|||++ ||+. .+..+. +++++++++|.+++++
T Consensus 89 ~qrv~iAral~~--~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~-~~l~~l~~~g~tvi~v 155 (171)
T 4gp7_A 89 KPLIEMAKDYHC--FPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK-KSIKGLQREGFRYVYI 155 (171)
T ss_dssp HHHHHHHHHTTC--EEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH-HHSTTHHHHTCSEEEE
T ss_pred HHHHHHHHHcCC--cEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh-hhhhhHHhcCCcEEEE
Confidence 344899999999 999999999999 9999 556767 7777787668888766
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.66 E-value=3.3e-16 Score=152.58 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=56.8
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
..+.++.++++......+ ...+++++ +++||++|+. +| ++||+||||+ ||+.+...++ ++++++++.|.+
T Consensus 523 ~~~~l~~~~l~~~~~~~~-~~~LSgG~~qrv~iAraL~~--~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t 598 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQP-ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT 598 (670)
T ss_dssp HHHHHHHTTCTTSBTTCC-GGGCCHHHHHHHHHHHHHHS--CCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccCC-chhCCHHHHHHHHHHHHHhh--CCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE
Confidence 456677788864321111 24566654 4999999988 66 5999999999 9999999999 999999877888
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
+++|
T Consensus 599 vi~v 602 (670)
T 3ux8_A 599 VLVI 602 (670)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 63
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.65 E-value=1.5e-17 Score=153.54 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCC----CCCcccChhhhh-------hHHHHHHHhCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRELI-------SLEDVMEELGLGPN 71 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~----~y~~~~~i~e~i-------~~~~~m~~~~L~~~ 71 (248)
.+++|+||||||||||+|+|+|+.+|++|+|.+.|.+...... +..+.++++|+. .++++++.+++...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4799999999999999999999999999999988765421110 112233444332 37889999988754
Q ss_pred CchhhhHHhhh----hhHHHHHHHHHccC--------CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHH-----hCC---
Q 025795 72 GGLIYCMEHLE----DNLDDWLAEELDNY--------LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLK-----SRN--- 130 (248)
Q Consensus 72 ~~~~~~~~~l~----~~~~~~La~~l~~~--------~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~-----~~~--- 130 (248)
..... ++ ..+++.+|+++... ++|+++++||||+ +|+..+..+. ++++++. +.|
T Consensus 150 ~~~~~----lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~-~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 150 DFFII----ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVL-QDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp SEEEE----EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH-HHHHHHHHHHHHHTTCSS
T ss_pred CCeEE----eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHH-HHHHHHHHHHHHhcCCCC
Confidence 32221 22 23458888888762 2688999999999 9999999988 7788774 333
Q ss_pred CeEEEEEecccccccC--hHHHHHHHHH
Q 025795 131 FNVCAVYLLDSQFITD--VTKFISGCMA 156 (248)
Q Consensus 131 ~~ii~v~l~d~~~~~d--~~~~~s~~l~ 156 (248)
.+++ ++++|...+ ...+++.+.-
T Consensus 225 ~~ii---liSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 225 PPIF---LLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp CCEE---ECCTTCTTSTTHHHHHHHHHH
T ss_pred CcEE---EEecCcCCccCHHHHHHHHHH
Confidence 2332 467777765 6776665543
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.6e-17 Score=151.76 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=80.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc-e-EEEeccCCCCCCCCC-C---------cccChhhhhh-------------
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR-T-MHIVNLDPAAENFDY-P---------VAMDIRELIS------------- 58 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~-i~i~~~d~~~~~~~y-~---------~~~~i~e~i~------------- 58 (248)
+++|+||||||||||+|+|+|+++|++| + |.+++ ++. +.+.| + ..+++++++.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Ccc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 5899999999999999999999999999 8 99887 442 22322 1 1234554331
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhhH--HHHHHHH--HccCCCCCE----EEEeC-CCc-cCHHhHHHHHHHHHHHHHh
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDNL--DDWLAEE--LDNYLDDDY----LVFDC-PGQ-IELFTHVPVLRNFVDHLKS 128 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~~--~~~La~~--l~~~~~p~~----lilDE-Pt~-LD~~~~~~~~~~ll~~l~~ 128 (248)
+.++++.+|+..... ...+++++ ++++|++ ++. +|++ +|+|| |++ ||+. ...+. +++++
T Consensus 218 ~~~ll~~~gl~~~~~----~~~LSgGq~qrlalAra~rL~~--~p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~--- 286 (460)
T 2npi_A 218 KQPMVKNFGLERINE----NKDLYLECISQLGQVVGQRLHL--DPQVRRSGCIVDTPSISQLDEN-LAELH-HIIEK--- 286 (460)
T ss_dssp BCCEECCCCSSSGGG----CHHHHHHHHHHHHHHHHHHHHH--CHHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHH---
T ss_pred HHHHHHHhCCCcccc----hhhhhHHHHHHHHHHHHHHhcc--CcccCcceEEEeCCcccccChh-HHHHH-HHHHH---
Confidence 223344455543321 23455544 4889999 999 9999 99999 999 9998 33333 44443
Q ss_pred CCCeEEEE
Q 025795 129 RNFNVCAV 136 (248)
Q Consensus 129 ~~~~ii~v 136 (248)
.+.++++|
T Consensus 287 ~~~tviiV 294 (460)
T 2npi_A 287 LNVNIMLV 294 (460)
T ss_dssp TTCCEEEE
T ss_pred hCCCEEEE
Confidence 35666555
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.61 E-value=3.5e-16 Score=128.65 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC-------CCCCCCC-CcccChhhhhhHHHHHHHhCCCCCCchh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP-------AAENFDY-PVAMDIRELISLEDVMEELGLGPNGGLI 75 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~-------~~~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~~ 75 (248)
.++|+||||||||||+++|+|++. +.+.|.+. ....++| .++.+..+.+ +..++..+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~-----~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI-----FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE-----EEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH-----HHhhcCCcccccc
Confidence 578999999999999999999985 33344322 1122333 1121222221 1111221110000
Q ss_pred hhHHhhhhhH--HHHHHHH-----HccCCCCCEEEEeC--CCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEeccccccc
Q 025795 76 YCMEHLEDNL--DDWLAEE-----LDNYLDDDYLVFDC--PGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT 145 (248)
Q Consensus 76 ~~~~~l~~~~--~~~La~~-----l~~~~~p~~lilDE--Pt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~ 145 (248)
.....+++++ ++.+|++ +.. +|+++|+|| |++ +|+..+..+. +++++ .+.+++++ .+.+|...
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~--~p~llilDEigp~~~ld~~~~~~l~-~~l~~---~~~~~i~~-~H~~h~~~ 144 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKD--RRKVIIIDEIGKMELFSKKFRDLVR-QIMHD---PNVNVVAT-IPIRDVHP 144 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHC--TTCEEEECCCSTTGGGCHHHHHHHH-HHHTC---TTSEEEEE-CCSSCCSH
T ss_pred ccccCcCHHHHHHHHHHhhcccccccc--CCCEEEEeCCCCcccCCHHHHHHHH-HHHhc---CCCeEEEE-EccCCCch
Confidence 0012344443 4788986 888 999999999 999 9998886666 54433 45545444 22355443
No 66
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.60 E-value=2.4e-15 Score=133.53 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhhhHH
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLE 60 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y-~~-------~~~i~e~i~~~ 60 (248)
+.+++++|||||||||+++.|+|+++|++|+|.+.|.|... ..++| ++ ..++++.+...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999988632 12343 21 22344554321
Q ss_pred H-------HHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHH-hC
Q 025795 61 D-------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR 129 (248)
Q Consensus 61 ~-------~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~ 129 (248)
. +++..|+.+.... .+..++ ++++.+|+++.. +|+ ++++| ||+ +|+.... +++. +.
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~--~~~eLS-kqr~~iaral~~--~P~e~lLvLD-ptsglD~~~~~-------~~~~~~~ 246 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYS--LMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVV 246 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHH--HHHHHH-HHHHHHHTTSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHT
T ss_pred HHcCCcchHHhcCCCCcchhH--HHHHHH-HHHHHHHHhhcc--CCCeeEEEEe-CCCCcCHHHHH-------HHHHHhc
Confidence 1 1222344333222 234455 455899999998 999 99999 999 9987542 3343 34
Q ss_pred CCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeee
Q 025795 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~v 171 (248)
|.+++++.-+|... ... ...+.....+.|...+
T Consensus 247 g~t~iiiThlD~~~--~~g-------~~l~~~~~~~~pi~~i 279 (302)
T 3b9q_A 247 GITGLILTKLDGSA--RGG-------CVVSVVEELGIPVKFI 279 (302)
T ss_dssp CCCEEEEECCSSCS--CTH-------HHHHHHHHHCCCEEEE
T ss_pred CCCEEEEeCCCCCC--ccC-------hheehHHHHCCCEEEE
Confidence 77766553245431 111 1234445667888643
No 67
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.56 E-value=1.2e-14 Score=131.99 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCC-Cc-------ccChhhhhhHH
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV-------AMDIRELISLE 60 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y-~~-------~~~i~e~i~~~ 60 (248)
+.+++|+|||||||||+++.|+|+++|.+|+|.+.+.|... ..++| ++ ..++++.+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 36899999999999999999999999999999999988632 12333 22 12344544321
Q ss_pred H-------HHHHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHH-hC
Q 025795 61 D-------VMEELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLK-SR 129 (248)
Q Consensus 61 ~-------~m~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~-~~ 129 (248)
. +++..|+.+.... .+..++ ++++.+++++.. +|+ ++++| ||+ +|+..+. +.+. +.
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~--~~~eLS-kqr~~iaral~~--~P~e~lLvLD-pttglD~~~~~-------~~~~~~~ 303 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYS--LMEELI-ACKKAVGKIVSG--APNEILLVLD-GNTGLNMLPQA-------REFNEVV 303 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHH--HHHHHH-HHHHHHHHHSTT--CCSEEEEEEE-GGGGGGGHHHH-------HHHHHHT
T ss_pred HhCCCHHHHHHhcCCChhhhh--HHHHHH-HHHHHHHHHHhc--CCCceEEEEc-CCCCCCHHHHH-------HHHHHhc
Confidence 1 1222344333222 234455 455899999999 999 99999 999 9987652 2333 34
Q ss_pred CCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeee
Q 025795 130 NFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 171 (248)
Q Consensus 130 ~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~v 171 (248)
|.+++++.-+|.. .... ..++.....+.|...+
T Consensus 304 g~t~iiiThlD~~--~~gG-------~~lsi~~~~~~pI~~i 336 (359)
T 2og2_A 304 GITGLILTKLDGS--ARGG-------CVVSVVEELGIPVKFI 336 (359)
T ss_dssp CCCEEEEESCTTC--SCTH-------HHHHHHHHHCCCEEEE
T ss_pred CCeEEEEecCccc--cccc-------HHHHHHHHhCCCEEEE
Confidence 7776655224542 1111 2234455678888654
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.55 E-value=6.4e-15 Score=146.33 Aligned_cols=73 Identities=25% Similarity=0.199 Sum_probs=58.0
Q ss_pred HHHHHHHhCCCCCC-chhhhHHhhhhh--HHHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795 59 LEDVMEELGLGPNG-GLIYCMEHLEDN--LDDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (248)
Q Consensus 59 ~~~~m~~~~L~~~~-~~~~~~~~l~~~--~~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (248)
+.++++.+||+... ... ...++++ +++.||++|+. + |+++||||||+ ||+.....+. ++++++.+.|.
T Consensus 710 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 784 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQP--ATELSGGEAQRIKLATELRR--SGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGN 784 (842)
T ss_dssp HHHHHHHTTCTTSBTTCC--GGGCCHHHHHHHHHHHTTSS--CCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCC--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 46788899998632 222 2456665 34889999988 6 69999999999 9999999999 99999987888
Q ss_pred eEEEE
Q 025795 132 NVCAV 136 (248)
Q Consensus 132 ~ii~v 136 (248)
++++|
T Consensus 785 tVIvi 789 (842)
T 2vf7_A 785 TVIAV 789 (842)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88766
No 69
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.52 E-value=3e-15 Score=144.49 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=85.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCC----------CCCCCC-------CcccChhhhhhHHHHHHHh
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPA----------AENFDY-------PVAMDIRELISLEDVMEEL 66 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~----------~~~~~y-------~~~~~i~e~i~~~~~m~~~ 66 (248)
++|+||||||||||+++|+|+..| ++|.|.+.|.+.. ...++| .+..++++++.. ....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~--~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK--AQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH--HHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH--HHHHh
Confidence 799999999999999999999988 7999999887631 112233 223345554432 12222
Q ss_pred CCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCC------Cc-cCHHhHHHHHHHHHHHHHhCCCeE-EEEEe
Q 025795 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCP------GQ-IELFTHVPVLRNFVDHLKSRNFNV-CAVYL 138 (248)
Q Consensus 67 ~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEP------t~-LD~~~~~~~~~~ll~~l~~~~~~i-i~v~l 138 (248)
+....+ .+... ..++..... .|+++++||| |+ +|+.....+. ++++++.+.+.++ +++.-
T Consensus 126 ~~~~~~--------~s~~~-i~l~i~~~~--~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt 193 (608)
T 3szr_A 126 AGEGMG--------ISHEL-ITLEISSRD--VPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVP 193 (608)
T ss_dssp HCSSSC--------CCSCC-EEEEEEESS--SCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEE
T ss_pred cCCccc--------cchHH-HHHHhcCCC--CCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEe
Confidence 211111 00000 111112223 7999999999 88 9999998888 8898875443333 22222
Q ss_pred cccccccChHHHHHHHHHHHHHHHhhCCCeeeeecccccccc
Q 025795 139 LDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 180 (248)
Q Consensus 139 ~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vlsk~dll~~ 180 (248)
+|....... ++-.....-..+.+.+-|++|.|++.+
T Consensus 194 ~~~d~a~~~------~l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 194 SNVDIATTE------ALSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp SSSCTTTCH------HHHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred ccchhccHH------HHHHHHHHhhcCCceEEEecchhhcCc
Confidence 222222111 111122223456789999999999864
No 70
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.52 E-value=3.4e-14 Score=123.53 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcc-cC-hhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVA-MD-IRELISLEDVMEELGLGPNGGLIYCME 79 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~-~~-i~e~i~~~~~m~~~~L~~~~~~~~~~~ 79 (248)
-+++|+|||||||||++++|+|+++|. +|+|.++|.+.... .+. .. +.+ ..+|+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~----~~~~~~~v~q--------~~~gl~~--------- 84 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV----FKHKKSIVNQ--------REVGEDT--------- 84 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----CCCSSSEEEE--------EEBTTTB---------
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----cCCcceeeeH--------HHhCCCH---------
Confidence 468999999999999999999999997 99999998764211 111 00 000 1223322
Q ss_pred hhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 80 ~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
..++..+++++.. +|+++++|||+ |+.+...+ ++.. +.|.+++++ +|.. +...+++.++.
T Consensus 85 ---~~l~~~la~aL~~--~p~illlDEp~--D~~~~~~~----l~~~-~~g~~vl~t----~H~~-~~~~~~dri~~ 144 (261)
T 2eyu_A 85 ---KSFADALRAALRE--DPDVIFVGEMR--DLETVETA----LRAA-ETGHLVFGT----LHTN-TAIDTIHRIVD 144 (261)
T ss_dssp ---SCHHHHHHHHHHH--CCSEEEESCCC--SHHHHHHH----HHHH-HTTCEEEEE----ECCS-SHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhh--CCCEEEeCCCC--CHHHHHHH----HHHH-ccCCEEEEE----eCcc-hHHHHHHHHhh
Confidence 1245899999999 99999999999 87775433 3433 457777554 2332 24455554433
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.52 E-value=4.9e-14 Score=126.47 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-.++|+||||||||||+++|+|+++|++|.|.+.|.+. ....+ .++.+. +-. + ..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e----~~~~~---~~~~i~---------~~~-g--------gg 226 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE----IVFKH---HKNYTQ---------LFF-G--------GN 226 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC----CCCSS---CSSEEE---------EEC-B--------TT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec----ccccc---chhEEE---------EEe-C--------CC
Confidence 35899999999999999999999999999999987541 11110 011100 000 0 11
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
..+++.|++++.. +|+++++|||++- ++. ++++.+...+.+++++ +|... ....++.++.
T Consensus 227 ~~~r~~la~aL~~--~p~ilildE~~~~------e~~-~~l~~~~~g~~tvi~t----~H~~~-~~~~~dri~~ 286 (330)
T 2pt7_A 227 ITSADCLKSCLRM--RPDRIILGELRSS------EAY-DFYNVLCSGHKGTLTT----LHAGS-SEEAFIRLAN 286 (330)
T ss_dssp BCHHHHHHHHTTS--CCSEEEECCCCST------HHH-HHHHHHHTTCCCEEEE----EECSS-HHHHHHHHHH
T ss_pred hhHHHHHHHHhhh--CCCEEEEcCCChH------HHH-HHHHHHhcCCCEEEEE----EcccH-HHHHhhhhee
Confidence 2455899999999 9999999999982 234 5677775433344443 23332 4455554444
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.52 E-value=1.6e-14 Score=132.24 Aligned_cols=52 Identities=19% Similarity=0.060 Sum_probs=44.4
Q ss_pred hhhhH--HHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 81 LEDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 81 l~~~~--~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++++ ++.||++++. +| ++|||||||+ ||+.+...+. ++++++. +|.++++|
T Consensus 296 lSgGe~qrl~lA~~l~~--~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~vi~i 352 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQVLVV 352 (415)
T ss_dssp SCHHHHHHHHHHHHHHH--CCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred cCHhHHHHHHHHHHHHh--CCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCEEEEE
Confidence 35554 3889999998 99 9999999999 9999999999 9999986 57788766
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.51 E-value=7.8e-14 Score=139.61 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCCCchhhhHHhhhhh--HHHHHHHHHccCCCC---CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795 59 LEDVMEELGLGPNGGLIYCMEHLEDN--LDDWLAEELDNYLDD---DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 59 ~~~~m~~~~L~~~~~~~~~~~~l~~~--~~~~La~~l~~~~~p---~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
..++++.+||+...... ....++++ +++.||++|+. +| +++||||||+ ||+.+...++ ++++++.+.|.+
T Consensus 785 ~~~~L~~vGL~~~~lgq-~~~~LSGGErQRV~LAraL~~--~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T 860 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQ-PATTLSGGEAQRIKLASELRK--RDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT 860 (916)
T ss_dssp HHHHHHHTTGGGSBTTC-CSTTCCHHHHHHHHHHHHHTS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHHcCCchhhccC-CccCCCHHHHHHHHHHHHHhh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE
Confidence 45678888886431111 12346665 45899999987 54 7999999999 9999999999 999999878888
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
+++|
T Consensus 861 VIvI 864 (916)
T 3pih_A 861 VIVI 864 (916)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 74
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.51 E-value=6.4e-14 Score=140.09 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=57.5
Q ss_pred HHHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCC
Q 025795 59 LEDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNF 131 (248)
Q Consensus 59 ~~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~ 131 (248)
..++++.+||+. ..+.. ...++++. ++.||++|+. + |+++||||||+ ||+.++..++ ++++++.+.|.
T Consensus 825 ~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~ 899 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHR--RSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSS--CCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhc--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCC
Confidence 356788899986 22222 24466654 4899999997 5 59999999999 9999999999 99999987888
Q ss_pred eEEEE
Q 025795 132 NVCAV 136 (248)
Q Consensus 132 ~ii~v 136 (248)
++++|
T Consensus 900 TVIvi 904 (972)
T 2r6f_A 900 TVLVI 904 (972)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88766
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.49 E-value=3.2e-15 Score=130.71 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
-|.++|+||||||||||+++|+|...|++|++.+.|.+.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 378999999999999999999999999999999988765
No 76
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.46 E-value=1.6e-13 Score=137.54 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=56.4
Q ss_pred HHHHHHhCCCC-CCchhhhHHhhhhhH--HHHHHHHHccCCC---CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCe
Q 025795 60 EDVMEELGLGP-NGGLIYCMEHLEDNL--DDWLAEELDNYLD---DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFN 132 (248)
Q Consensus 60 ~~~m~~~~L~~-~~~~~~~~~~l~~~~--~~~La~~l~~~~~---p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ 132 (248)
.++++.+||+. ..+.. ...++++. ++.||++|+. + |+++||||||+ ||+.....++ ++++++.+.|.+
T Consensus 844 ~~~L~~lgL~~~~l~~~--~~~LSGGekQRv~LAraL~~--~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T 918 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQP--APTLSGGEAQRVKLASELQK--RSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNT 918 (993)
T ss_dssp HHHHHHTTGGGSBTTCC--GGGSCHHHHHHHHHHHHHSS--CCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE
T ss_pred HHHHHHcCCCcccccCc--cccCCHHHHHHHHHHHHHHh--CCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE
Confidence 46788888875 22222 24566654 4899999997 5 49999999999 9999999999 999999877888
Q ss_pred EEEE
Q 025795 133 VCAV 136 (248)
Q Consensus 133 ii~v 136 (248)
+++|
T Consensus 919 VIvi 922 (993)
T 2ygr_A 919 VIVI 922 (993)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8766
No 77
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.46 E-value=1.2e-14 Score=123.23 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH--hCCCCCCceEEEeccCCCC------CCCCCCc-------ccChhhhhhHHHHH---H
Q 025795 3 YAQLVIGPAGSGKSTYCSSLY--RHCETVRRTMHIVNLDPAA------ENFDYPV-------AMDIRELISLEDVM---E 64 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~--g~l~~~~G~i~i~~~d~~~------~~~~y~~-------~~~i~e~i~~~~~m---~ 64 (248)
-+++|+||||||||||+++++ |..++.+|.+++.+.++.. +.+++.+ .+++.+........ +
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccccc
Confidence 478999999999999999999 6656667777776654321 1223311 01111111100000 0
Q ss_pred Hh-CCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cC-----HHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 65 EL-GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE-----LFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 65 ~~-~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD-----~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.. .+.+. .+ ......+...+... +|+++++|||++ +| ...+..+. ++++.+++.|.+++++
T Consensus 111 ~~~~~~~~--------~~-~~~~~~~~~~l~~~-~p~~lilDep~~~ld~~~d~~~~~~~l~-~l~~~l~~~g~tii~v 178 (251)
T 2ehv_A 111 KFVLEDRF--------NV-DNFLRYIYRVVKAI-NAKRLVIDSIPSIALRLEEERKIREVLL-KLNTILLEMGVTTILT 178 (251)
T ss_dssp -------C--------CH-HHHHHHHHHHHHHT-TCSEEEEECHHHHHHHSSSGGGHHHHHH-HHHHHHHHHCCEEEEE
T ss_pred ceeccCcc--------cH-HHHHHHHHHHHHhh-CCCEEEEccHHHHHhhcCCHHHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 00 00000 00 11112222222222 899999999998 86 44444455 8999987778888766
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.43 E-value=6.6e-13 Score=118.35 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=42.9
Q ss_pred HhhhhhHH--HHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 79 EHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 79 ~~l~~~~~--~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..++++++ ++||++++. ..+|+++|+||||+ ||+.....+. ++++++. .+.+++++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~vi~~ 278 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQFIVI 278 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEE
Confidence 34555543 788988862 11789999999999 9999999988 8888884 46677655
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.42 E-value=3.7e-15 Score=124.50 Aligned_cols=58 Identities=5% Similarity=-0.050 Sum_probs=43.8
Q ss_pred HHccCCCCCEEEEeCCCc-c----CHHhHHHHHHHHHHHHHh-CCCeEEEEEecccccccChHHHHHHHHH
Q 025795 92 ELDNYLDDDYLVFDCPGQ-I----ELFTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 92 ~l~~~~~p~~lilDEPt~-L----D~~~~~~~~~~ll~~l~~-~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
+++. +|+++++|||++ + |+..++.+. ++++++.+ .|.+++++ +|.+.+...+++.++.
T Consensus 137 ~l~~--~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~tvi~v----tHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 137 VFLA--PPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFDKVVV----NRRLESACAELVSLLV 200 (207)
T ss_dssp EEEE--CSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSSEEEE----CSSHHHHHHHHHHHHC
T ss_pred EEEE--CCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCcEEEE----CCCHHHHHHHHHHHHH
Confidence 4555 899999999987 7 677888887 88888864 57888655 6777777777766544
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.41 E-value=5.3e-13 Score=111.69 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-------CCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-------VRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-------~~G~i~i~~~d 39 (248)
-+++|+||||||||||++.|+|...+ .+|.+++.+.+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 57899999999999999999996554 34466666543
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.39 E-value=8.6e-13 Score=117.17 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-------------CCCCC-Cc------ccChhhhhhHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-------------ENFDY-PV------AMDIRELISLEDV 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y-~~------~~~i~e~i~~~~~ 62 (248)
.+++|+|||||||||+++.|+|+++|++|+|.+.+.|+.. ..++| ++ ..++++.+.....
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999988632 12444 22 1234444432111
Q ss_pred H-------HHhCCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHh-CCCeEE
Q 025795 63 M-------EELGLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS-RNFNVC 134 (248)
Q Consensus 63 m-------~~~~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~-~~~~ii 134 (248)
- +..|..+.. ...++.++ +++..+|+++.. +|+.+++ .||+.+...++ +.++.+.+ .+.+++
T Consensus 183 ~~~d~~llDt~G~~~~~--~~~~~eLs-~~r~~iaRal~~--~P~~~lL----vLDa~t~~~~~-~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTK--HNLMEELK-KVKRAIAKADPE--EPKEVWL----VLDAVTGQNGL-EQAKKFHEAVGLTGV 252 (304)
T ss_dssp HTCSEEEECCCCCCTTC--HHHHHHHH-HHHHHHHHHCTT--CCSEEEE----EEETTBCTHHH-HHHHHHHHHHCCSEE
T ss_pred CCCCEEEecCCCCCCch--HHHHHHHH-HHHHHHHHhhcC--CCCeEEE----EEcHHHHHHHH-HHHHHHHHHcCCcEE
Confidence 0 011221111 11233343 345889999999 9994333 34444444445 45555543 367766
Q ss_pred EEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeee
Q 025795 135 AVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (248)
Q Consensus 135 ~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vl 172 (248)
++.-.|... ... .+ .+....++.|...+-
T Consensus 253 ivTh~d~~a--~gg-----~~--l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 253 IVTKLDGTA--KGG-----VL--IPIVRTLKVPIKFVG 281 (304)
T ss_dssp EEECTTSSC--CCT-----TH--HHHHHHHCCCEEEEE
T ss_pred EEECCcccc--ccc-----HH--HHHHHHHCCCeEEEe
Confidence 553234321 111 11 234445778886553
No 82
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=1.5e-12 Score=103.78 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=65.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
.++|+||||||||||++++++.+.+ +| .+++.+.+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~-------------------------------------- 78 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT-------------------------------------- 78 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH--------------------------------------
Confidence 5789999999999999999999877 45 455544322110
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCe-EEEEEecccccccChHHHHH
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFN-VCAVYLLDSQFITDVTKFIS 152 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~-ii~v~l~d~~~~~d~~~~~s 152 (248)
++.. +|+++++|||+.++......++ ++++.+.+.|.+ ++++.-.....+....++.|
T Consensus 79 ----------~~~~--~~~lLilDE~~~~~~~~~~~l~-~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S 137 (149)
T 2kjq_A 79 ----------DAAF--EAEYLAVDQVEKLGNEEQALLF-SIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT 137 (149)
T ss_dssp ----------GGGG--GCSEEEEESTTCCCSHHHHHHH-HHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH
T ss_pred ----------HHHh--CCCEEEEeCccccChHHHHHHH-HHHHHHHHcCCcEEEEECCCCHHHccccHHHHH
Confidence 1234 7999999999997766666666 888888766776 66554333333332244444
No 83
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.37 E-value=1.2e-12 Score=118.69 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=63.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
+++|+|||||||||+++++.|++++. +|.|...+ ||.... ....... +. ....+.. .
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~--~~~~~~~---v~------q~~~~~~----------~ 182 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV--HESKKCL---VN------QREVHRD----------T 182 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC--CCCSSSE---EE------EEEBTTT----------B
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh--hhccccc---ee------eeeeccc----------c
Confidence 68999999999999999999999987 56665543 432111 1000000 00 0001111 0
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..+..+|+++|.. +|+++++|||+ |..+. +.+.++.+.|.+++++
T Consensus 183 ~~~~~~La~aL~~--~PdvillDEp~--d~e~~-----~~~~~~~~~G~~vl~t 227 (356)
T 3jvv_A 183 LGFSEALRSALRE--DPDIILVGEMR--DLETI-----RLALTAAETGHLVFGT 227 (356)
T ss_dssp SCHHHHHHHHTTS--CCSEEEESCCC--SHHHH-----HHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHhhh--CcCEEecCCCC--CHHHH-----HHHHHHHhcCCEEEEE
Confidence 1233588999999 99999999999 54443 3333445668887655
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.34 E-value=6.7e-14 Score=124.73 Aligned_cols=106 Identities=13% Similarity=0.003 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCCCC------CCCCCCc--cc-ChhhhhhHHHHHHHhCCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDPAA------ENFDYPV--AM-DIRELISLEDVMEELGLGP 70 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~~~------~~~~y~~--~~-~i~e~i~~~~~m~~~~L~~ 70 (248)
+.++||+||||||||||+++|+|+++|..| .+.+..+|... +++.+.. .. .-.+.-.+.+.++.++ ..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~ 168 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG 168 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC
Confidence 368999999999999999999999998866 56666555321 1111100 00 0011112566777776 22
Q ss_pred CCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCH
Q 025795 71 NGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IEL 112 (248)
Q Consensus 71 ~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~ 112 (248)
..... ...++++++ +.+|++++. +|+++|+|||+. .|.
T Consensus 169 ~~~~~--~~~lS~G~~qRv~~a~al~~--~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SDYAC--APVYSHLHYDIIPGAEQVVR--HPDILILEGLNVLQTG 209 (312)
T ss_dssp CSCEE--EEEEETTTTEEEEEEEEEEC--SCSEEEEECTTTTCCC
T ss_pred cccCC--cccCChhhhhhhhhHHHhcc--CCCEEEECCccccCCc
Confidence 22111 123445443 567778888 999999999998 764
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.34 E-value=1.1e-12 Score=131.74 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCcHHHHHHHH--------HhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCch
Q 025795 3 YAQLVIGPAGSGKSTYCSSL--------YRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l--------~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~ 74 (248)
-+++|+||||||||||+|.+ .|..-|..+.. + + .. +.++..+|+.++...
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~-~---------~~-----------d~i~~~ig~~d~l~~ 720 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V-S---------IV-----------DCILARVGAGDSQLK 720 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E-E---------CC-----------SEEEEECC-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c-h---------HH-----------HHHHHhcCchhhHHH
Confidence 46899999999999999999 66554443221 0 0 00 011112222221111
Q ss_pred hhhHHhhhhhHHHHHHHHH--ccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 75 IYCMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 75 ~~~~~~l~~~~~~~La~~l--~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
....++.++ ..+++++ +. +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 721 --~lStf~~e~-~~~a~il~~a~--~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~a 781 (934)
T 3thx_A 721 --GVSTFMAEM-LETASILRSAT--KDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA 781 (934)
T ss_dssp ----CHHHHHH-HHHHHHHHHCC--TTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred --hHhhhHHHH-HHHHHHHHhcc--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 112344444 5666666 56 999999999999 9999998886588888875 47777655
No 86
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.33 E-value=4.4e-12 Score=115.17 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=45.5
Q ss_pred hhhhhH--HHHHHHHHc------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 80 HLEDNL--DDWLAEELD------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 80 ~l~~~~--~~~La~~l~------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++++. ++.||++++ . +|+++|+||||+ ||+.+...++ ++++++.+.|.++++|
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~--~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~i 341 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASG--RLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFI 341 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTT--TCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccC--CCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 455554 378888887 6 999999999999 9999999999 8999987778888766
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.30 E-value=1.9e-12 Score=122.66 Aligned_cols=121 Identities=15% Similarity=0.058 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCce-EEEeccCCCCCCCCC--CcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDY--PVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~-i~i~~~d~~~~~~~y--~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~ 79 (248)
-+++|+||||||||||++.++|...+.+++ +++.+.++..+-... ...++ ++++. ..|+....... ..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~------~~~~~-~~g~~~~~~~~--p~ 352 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMD------FEEME-RQNLLKIVCAY--PE 352 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCC------HHHHH-HTTSEEECCCC--GG
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC------HHHHH-hCCCEEEEEec--cc
Confidence 478999999999999999999998886443 455554432100000 00011 22222 22221111110 11
Q ss_pred hhhh--hHHHHHHHHHccCCCCCEEEEeCCCc-cCHH-----hHHHHHHHHHHHHHhCCCeEEEE
Q 025795 80 HLED--NLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----THVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 80 ~l~~--~~~~~La~~l~~~~~p~~lilDEPt~-LD~~-----~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
.++. .+++.+++++.. +|+++|+| |++ +|.. .+..+. ++++.+++.|.+++++
T Consensus 353 ~LS~g~~q~~~~a~~l~~--~p~llilD-p~~~Ld~~~~~~~~~~~i~-~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDF--KPARIAID-SLSALARGVSNNAFRQFVI-GVTGYAKQEEITGLFT 413 (525)
T ss_dssp GSCHHHHHHHHHHHHHTT--CCSEEEEE-CHHHHTSSSCHHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred cCCHHHHHHHHHHHHHhh--CCCEEEEc-ChHHHHhhCChHHHHHHHH-HHHHHHHhCCCEEEEE
Confidence 2333 344788888888 99999999 999 9998 887877 8999998888888766
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.28 E-value=8.4e-12 Score=104.12 Aligned_cols=117 Identities=10% Similarity=0.129 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCc---------
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGG--------- 73 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~--------- 73 (248)
-+++|+||||||||||++.+++...+.+|.+.+.+.+...+. +.+.+..++......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 89 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS--------------IIRQAKQFNWDFEEYIEKKLIIID 89 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH--------------HHHHHHHTTCCCGGGBTTTEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH--------------HHHHHHHhcchHHHHhhCCEEEEe
Confidence 468999999999999999999988888889988875432110 000111111111000
Q ss_pred -------hhhhHHh-hhhhHHHHH-HHHHccCCCCC--EEEEeCCCc-c--CHHhHHHHHHHHHHHHH-hCCCeEEEE
Q 025795 74 -------LIYCMEH-LEDNLDDWL-AEELDNYLDDD--YLVFDCPGQ-I--ELFTHVPVLRNFVDHLK-SRNFNVCAV 136 (248)
Q Consensus 74 -------~~~~~~~-l~~~~~~~L-a~~l~~~~~p~--~lilDEPt~-L--D~~~~~~~~~~ll~~l~-~~~~~ii~v 136 (248)
..+..+. -.+.+...+ +..... +|+ ++++|||++ + |+...+.++ +.++++. +.|.+++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDe~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~vi~~ 164 (235)
T 2w0m_A 90 ALMKEKEDQWSLVNLTPEELVNKVIEAKQKL--GYGKARLVIDSVSALFLDKPAMARKIS-YYLKRVLNKWNFTIYAT 164 (235)
T ss_dssp CCC----CTTBCSSCCHHHHHHHHHHHHHHH--CSSCEEEEEETGGGGSSSCGGGHHHHH-HHHHHHHHHTTEEEEEE
T ss_pred ccccccCceeeecCCCHHHHHHHHHHHHHhh--CCCceEEEEECchHhhcCCHHHHHHHH-HHHHHHHHhCCCeEEEE
Confidence 0000000 001111222 222234 899 999999997 6 988888888 7777775 458777766
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.27 E-value=9.4e-13 Score=133.45 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC--Cc-eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV--RR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 79 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~--~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~ 79 (248)
-+++|+||||||||||+|.+ |++.+. -| .| |+. ...+++.+.+ +..+|+.++... ...
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~V------pq~-----~~~l~v~d~I-----~~rig~~d~~~~--~~s 850 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYV------PAE-----VCRLTPIDRV-----FTRLGASDRIMS--GES 850 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCE------ESS-----EEEECCCSBE-----EEECC-----------C
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHhheeEEe------ccC-----cCCCCHHHHH-----HHHcCCHHHHhh--chh
Confidence 47899999999999999999 987642 11 11 110 0122333332 112333322111 112
Q ss_pred hhhhhHH-HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhC-CCeEEEE
Q 025795 80 HLEDNLD-DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSR-NFNVCAV 136 (248)
Q Consensus 80 ~l~~~~~-~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~-~~~ii~v 136 (248)
.++.+++ ++++++++. +|+++|+||||. +|+.....+...+++.+.+. |.+++++
T Consensus 851 tf~~em~~~a~al~la~--~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~ 908 (1022)
T 2o8b_B 851 TFFVELSETASILMHAT--AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFS 908 (1022)
T ss_dssp HHHHHHHHHHHHHHHCC--TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred hhHHHHHHHHHHHHhCC--CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3444443 677778888 999999999999 99998655444899999765 7777655
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.27 E-value=4.2e-12 Score=111.25 Aligned_cols=127 Identities=10% Similarity=0.053 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCC-----CC--CcccChhhhhh------------HHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENF-----DY--PVAMDIRELIS------------LEDV 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~~-----~y--~~~~~i~e~i~------------~~~~ 62 (248)
-+++|+||||||||||++.++|...+.+| +|.+.+.+.....+ .+ .......+.+. ++++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 46899999999999999999999998877 78776654321100 00 00111111111 1222
Q ss_pred HHHhCC--CCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cC------H-HhHHHHHHHHHHHHHh-CCC
Q 025795 63 MEELGL--GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IE------L-FTHVPVLRNFVDHLKS-RNF 131 (248)
Q Consensus 63 m~~~~L--~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD------~-~~~~~~~~~ll~~l~~-~~~ 131 (248)
++..++ ...... .....+ ..++. ++++.. +|+++|+|||+. ++ . .....++ +.++++++ .|.
T Consensus 116 l~~~~l~i~~~~~~-~~~~~l--~~~~~-a~~~~~--~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~la~~~~~ 188 (296)
T 1cr0_A 116 FGNDTFHLYDSFAE-AETDRL--LAKLA-YMRSGL--GCDVIILDHISIVVSASGESDERKMIDNLM-TKLKGFAKSTGV 188 (296)
T ss_dssp HSSSCEEEECCCCS-CCHHHH--HHHHH-HHHHTT--CCSEEEEEEEC-----------CHHHHHHH-HHHHHHHHHHCC
T ss_pred hccCCEEEECCCCC-CCHHHH--HHHHH-HHHHhc--CCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHHHHHHhCC
Confidence 221122 111000 011111 11122 555667 999999999998 43 3 3445566 66777754 488
Q ss_pred eEEEE
Q 025795 132 NVCAV 136 (248)
Q Consensus 132 ~ii~v 136 (248)
+++++
T Consensus 189 ~vi~v 193 (296)
T 1cr0_A 189 VLVVI 193 (296)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88776
No 91
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.26 E-value=2.6e-12 Score=128.74 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCCCC-CCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDPAA-ENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~~~-~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
-+++|+||||||||||+|++++.... ..|. .-|+. ..++.. +.++..+|+.++.... ...
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~-----~vpa~~~~i~~~-----------d~i~~~ig~~d~l~~~--~st 735 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGS-----YVPAEEATIGIV-----------DGIFTRMGAADNIYKG--RST 735 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTC-----CBSSSEEEEECC-----------SEEEEEC------------CC
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCc-----cccchhhhhhHH-----------HHHHHhCChHHHHHHh--HHH
Confidence 46899999999999999999754210 0010 00110 000000 0011112222111110 122
Q ss_pred hhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 81 LEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 81 l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
++.++. ..++++ +. +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 736 fs~em~~~~~il~~-a~--~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 736 FMEELTDTAEIIRK-AT--SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp HHHHHHHHHHHHHH-CC--TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhHHHHHHHHHHHh-cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 333432 334433 55 999999999999 9999998887688888864 57777665
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.25 E-value=1.2e-11 Score=100.47 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCce-EEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRT-MHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~-i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
.+++|+||||+|||||++++++.+.+..|. +.+ ++..+.+. .+...+.-+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~---------------~~~~~~~~--~~~~~~~~~~~---------- 91 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF---------------FDTKDLIF--RLKHLMDEGKD---------- 91 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE---------------EEHHHHHH--HHHHHHHHTCC----------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE---------------EEHHHHHH--HHHHHhcCchH----------
Confidence 468999999999999999999998765552 211 12222211 11111100000
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
. ..+ .... +|+++++|||+. +|...+..+. ++++...++|.+++++
T Consensus 92 -~---~~~--~~~~--~~~llilDE~~~~~~~~~~~~~l~-~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 92 -T---KFL--KTVL--NSPVLVLDDLGSERLSDWQRELIS-YIITYRYNNLKSTIIT 139 (180)
T ss_dssp -S---HHH--HHHH--TCSEEEEETCSSSCCCHHHHHHHH-HHHHHHHHTTCEEEEE
T ss_pred -H---HHH--HHhc--CCCEEEEeCCCCCcCCHHHHHHHH-HHHHHHHHcCCCEEEE
Confidence 0 111 1123 799999999983 9998887777 8888877678887765
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.25 E-value=1.4e-12 Score=123.67 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCcHHHHHHH--HHhCCCCCCceEEEeccCCCC------CCCCCCc-ccChhhhhhHHHHHHHhCCCCCCc
Q 025795 3 YAQLVIGPAGSGKSTYCSS--LYRHCETVRRTMHIVNLDPAA------ENFDYPV-AMDIRELISLEDVMEELGLGPNGG 73 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~--l~g~l~~~~G~i~i~~~d~~~------~~~~y~~-~~~i~e~i~~~~~m~~~~L~~~~~ 73 (248)
-+++|+||||||||||+++ ++|+.+|.+|.|++.|.+... ..++|.+ +....+++ ..+...+...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l------~~~~~~~~~~ 113 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL------FILDASPDPE 113 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE------EEEECCCCSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcE------EEEecCcccc
Confidence 4689999999999999999 789999899999999876421 2233311 10000000 0001111000
Q ss_pred hhhhHHh-hhhhHHHHHHHHHccCCCCCEEEEeCCCc------cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 74 LIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQ------IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 74 ~~~~~~~-l~~~~~~~La~~l~~~~~p~~lilDEPt~------LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
....++. -...+...+..++... +|+.+++|||++ +|+..++.+. ++++.+++.|.+++++
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~~lD~~~~~~l~-~ll~~l~~~g~tvl~i 181 (525)
T 1tf7_A 114 GQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSVVRRELF-RLVARLKQIGATTVMT 181 (525)
T ss_dssp CCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTCCHHHHHHHHH-HHHHHHHHHTCEEEEE
T ss_pred hhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhcCCHHHHHHHHH-HHHHHHHHCCCEEEEE
Confidence 0000000 0111214455555422 899999999986 3778888888 9999998778888776
No 94
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.23 E-value=2e-11 Score=109.45 Aligned_cols=150 Identities=16% Similarity=0.136 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-----------C--CCCC-------CcccChhhhhhHHH
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-----------E--NFDY-------PVAMDIRELISLED 61 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-----------~--~~~y-------~~~~~i~e~i~~~~ 61 (248)
+.+++++|||||||||+++.|+|+++|.+|+|.+.+.|+.. + .+++ .|..++++++....
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~ 208 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAK 208 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999988632 1 1112 22234455443211
Q ss_pred HHHHhC---CCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHH-hCCCeEEEEE
Q 025795 62 VMEELG---LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVY 137 (248)
Q Consensus 62 ~m~~~~---L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~-~~~~~ii~v~ 137 (248)
. .... +...|... ....+...+ ..+++++.. ++.++++|.+++. ++. +.++.+. +.+.+.+++.
T Consensus 209 ~-~~~d~vliDtaG~~~-~~~~l~~eL-~~i~ral~~--de~llvLDa~t~~------~~~-~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 209 A-RGIDVVLIDTAGRSE-TNRNLMDEM-KKIARVTKP--NLVIFVGDALAGN------AIV-EQARQFNEAVKIDGIILT 276 (328)
T ss_dssp H-HTCSEEEEEECCSCC-TTTCHHHHH-HHHHHHHCC--SEEEEEEEGGGTT------HHH-HHHHHHHHHSCCCEEEEE
T ss_pred h-ccchhhHHhhccchh-HHHHHHHHH-HHHHHHhcC--CCCEEEEecHHHH------HHH-HHHHHHHHhcCCCEEEEe
Confidence 1 1111 00001000 011233334 456778776 7778888866653 333 4445554 3577766664
Q ss_pred ecccccccChHHHHHHHHHHHHHHHhhCCCeeeee
Q 025795 138 LLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (248)
Q Consensus 138 l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vl 172 (248)
=+|...-. . ...+.....+.|...+-
T Consensus 277 KlD~~a~~--G-------~~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 277 KLDADARG--G-------AALSISYVIDAPILFVG 302 (328)
T ss_dssp CGGGCSCC--H-------HHHHHHHHHTCCEEEEE
T ss_pred CcCCccch--h-------HHHHHHHHHCCCEEEEe
Confidence 45643221 1 12345566788886543
No 95
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.22 E-value=2.8e-11 Score=110.22 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccC-hhhhhhHHHHHHHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMD-IRELISLEDVMEELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~-i~e~i~~~~~m~~~~L~~~~~~~~~~~~ 80 (248)
-+++|+|||||||||++++|+|++++. +|+|.+.+.+... .+..... +.+. .+|+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~--------~~g~~~---------- 195 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQR--------EVGEDT---------- 195 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEE--------EBTTTB----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEee--------ecCCCH----------
Confidence 468999999999999999999999987 8999887753321 1111000 0000 122222
Q ss_pred hhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHH
Q 025795 81 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 156 (248)
Q Consensus 81 l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~ 156 (248)
..++..+++++.. +|+++++|||+ |..+.. .+++.. ..|..++.+ +|. .+...+++.++.
T Consensus 196 --~~~~~~l~~~L~~--~pd~illdE~~--d~e~~~----~~l~~~-~~g~~vi~t----~H~-~~~~~~~~rl~~ 255 (372)
T 2ewv_A 196 --KSFADALRAALRE--DPDVIFVGEMR--DLETVE----TALRAA-ETGHLVFGT----LHT-NTAIDTIHRIVD 255 (372)
T ss_dssp --SCSHHHHHHHTTS--CCSEEEESCCC--SHHHHH----HHHHHH-TTTCEEEEC----CCC-CSHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhh--CcCEEEECCCC--CHHHHH----HHHHHH-hcCCEEEEE----ECc-chHHHHHHHHHH
Confidence 1124788899998 99999999999 554432 334443 457666433 333 446666665543
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.20 E-value=8.6e-11 Score=105.36 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 87 ~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++|+++.. +|+++|+||||+ ||+..+..+. ++++++.+.+.+++++
T Consensus 263 l~~a~~l~~--~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~vi~~ 310 (339)
T 3qkt_A 263 LAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV 310 (339)
T ss_dssp HHHHHHTTT--TTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred HHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 467777777 999999999999 9999999999 8888886667777665
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.20 E-value=7.4e-12 Score=123.50 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCC-CCCCCCC----cccChhhhhhHHHHHHHhCCCCCCchhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPA-AENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIY 76 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~~~d~~-~~~~~y~----~~~~i~e~i~~~~~m~~~~L~~~~~~~~ 76 (248)
-+++|+||||||||||+|+++|+.. ++.|.+. |+ ...+++. +.+++.+++.. ++ .
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa~~~~i~~v~~i~~~~~~~d~l~~-------g~--S----- 637 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PAEEAHLPLFDGIYTRIGASDDLAG-------GK--S----- 637 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SSSEEEECCCSEEEEECCC-------------CC--S-----
T ss_pred cEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----ehhccceeeHHHhhccCCHHHHHHh-------cc--c-----
Confidence 3689999999999999999999864 5667542 21 1123331 12333332210 11 1
Q ss_pred hHHhhhhhHHHHHHHHH--ccCCCCCEEEEeCC---Cc-cCHHhHH-HHHHHHHHHHHhCCCeEEEE
Q 025795 77 CMEHLEDNLDDWLAEEL--DNYLDDDYLVFDCP---GQ-IELFTHV-PVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 77 ~~~~l~~~~~~~La~~l--~~~~~p~~lilDEP---t~-LD~~~~~-~~~~~ll~~l~~~~~~ii~v 136 (248)
.....+ ..+++++ +. +|+++|+||| |+ +|..+.. .+. +.+.+ .|.+++++
T Consensus 638 ---~~~~e~-~~la~il~~a~--~p~LlLLDEpgrGTs~lD~~~~~~~i~-~~L~~---~g~~vl~~ 694 (765)
T 1ewq_A 638 ---TFMVEM-EEVALILKEAT--ENSLVLLDEVGRGTSSLDGVAIATAVA-EALHE---RRAYTLFA 694 (765)
T ss_dssp ---HHHHHH-HHHHHHHHHCC--TTEEEEEESTTTTSCHHHHHHHHHHHH-HHHHH---HTCEEEEE
T ss_pred ---HHHHHH-HHHHHHHHhcc--CCCEEEEECCCCCCCCcCHHHHHHHHH-HHHHh---CCCEEEEE
Confidence 111222 5667777 66 9999999999 88 9988753 444 44433 46676655
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.19 E-value=1.1e-11 Score=107.97 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC-CCCCC-CcccChhh-------------hhhHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA-ENFDY-PVAMDIRE-------------LISLEDVMEELG 67 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~-~~~~y-~~~~~i~e-------------~i~~~~~m~~~~ 67 (248)
-+++|+||||||||||++.+++.+.. |.+. .|.++.. ..+.| ....+..+ .....++++.++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~-~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG--GPDL-LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT--CCCT-TCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-CCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 46899999999999999999986653 3221 1221110 01111 00000000 011334566666
Q ss_pred CCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc---cCHHhH---HHHHHHHHHHHH-hCCCeEEEEE
Q 025795 68 LGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ---IELFTH---VPVLRNFVDHLK-SRNFNVCAVY 137 (248)
Q Consensus 68 L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~---LD~~~~---~~~~~~ll~~l~-~~~~~ii~v~ 137 (248)
+.+..... ...++.+. ...+++++. +|+++++|||++ +|.... ..++ +.++.+. +.|.++++++
T Consensus 108 l~~~~~~~--~~~ls~g~-~~~i~~l~~--~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~~g~tvi~i~ 178 (279)
T 1nlf_A 108 IQPLIGSL--PNIMAPEW-FDGLKRAAE--GRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAADTGCSIVFLH 178 (279)
T ss_dssp ECCCTTSC--CCTTSHHH-HHHHHHHHT--TCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHHHCCEEEEEE
T ss_pred EeecCCCC--cccCCHHH-HHHHHHhcC--CCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 65432221 12344444 455567777 899999999997 565433 5666 6666664 4588888773
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.19 E-value=5.2e-13 Score=110.74 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+++|+||||||||||++.|+|+++ ++| +.++|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 579999999999999999999999 889 88887654
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.13 E-value=1.6e-10 Score=104.28 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--CCCC----ce-EEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--ETVR----RT-MHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--~~~~----G~-i~i~~~d 39 (248)
-+++|+||||||||||++.+++.. +|+. |+ +++.+.+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 578999999999999999999987 5554 67 7777654
No 101
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.11 E-value=3.9e-11 Score=118.93 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEeccCCCC-CCCCCC----cccChhhhhhHHHHHHHhCCCCCCchhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIVNLDPAA-ENFDYP----VAMDIRELISLEDVMEELGLGPNGGLIY 76 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~~~d~~~-~~~~y~----~~~~i~e~i~~~~~m~~~~L~~~~~~~~ 76 (248)
-+++|+||||||||||+|+++|+.. ...|.. -|+. ..+++. ..+++.+.+. .++
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-----vpa~~~~i~~~~~i~~~~~~~d~l~-------~~~-------- 667 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSY-----VPAQKVEIGPIDRIFTRVGAADDLA-------SGR-------- 667 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-----BSSSEEEECCCCEEEEEEC------------------------
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-----cchhcccceeHHHHHhhCCHHHHHH-------hhh--------
Confidence 4689999999999999999999642 222310 0111 112221 1222222221 011
Q ss_pred hHHhhhhhHHHHHHHH--HccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh-CCCeEEEE
Q 025795 77 CMEHLEDNLDDWLAEE--LDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 77 ~~~~l~~~~~~~La~~--l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~-~~~~ii~v 136 (248)
..++.++ ..++.+ .+. +|+++|+||||+ +|+.....+...+++.+.+ .|.+++++
T Consensus 668 --stf~~e~-~~~~~il~~a~--~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 668 --STFMVEM-TETANILHNAT--EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp ----CHHHH-HHHHHHHHHCC--TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred --hhhhHHH-HHHHHHHHhcc--CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1122222 223333 355 999999999988 8888777764488888876 47777655
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.10 E-value=1.5e-12 Score=108.17 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=71.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhh-------------hhHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIREL-------------ISLEDVMEELGL 68 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~-------------i~~~~~m~~~~L 68 (248)
+.+++|+|||||||||++++|+|++.| .+.+...|+...... .+++++. -.+.+.++.+++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLG---HLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCT---TSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcc---cccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 468999999999999999999998765 566666654321111 1122211 125566676666
Q ss_pred CCCCchhhhHHhhhhh------HHHHHHHHHccCCCCCEEEEeCCCc--------cCHHhHHHHHHHHHHHH-HhCCCeE
Q 025795 69 GPNGGLIYCMEHLEDN------LDDWLAEELDNYLDDDYLVFDCPGQ--------IELFTHVPVLRNFVDHL-KSRNFNV 133 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~------~~~~La~~l~~~~~p~~lilDEPt~--------LD~~~~~~~~~~ll~~l-~~~~~~i 133 (248)
+...... ..+ ++.+ +++.+++++.. +|.++++|||++ ||......+. +.+++. .+.|.++
T Consensus 80 ~~~~~~~-~~~-~s~g~~~~~~~~~~~~~~li~--~~~ll~~de~~~~~~d~~i~ld~~~~~~~~-r~l~r~~~~~g~t~ 154 (211)
T 3asz_A 80 GLPVEMP-VYD-FRAYTRSPRRTPVRPAPVVIL--EGILVLYPKELRDLMDLKVFVDADADERFI-RRLKRDVLERGRSL 154 (211)
T ss_dssp TCCEEEC-CEE-TTTTEECSSCEEECCCSEEEE--ESTTTTSSHHHHTTCSEEEEEECCHHHHHH-HHHHHHHHHSCCCH
T ss_pred CCCcCCC-ccc-CcccCCCCCeEEeCCCcEEEE--eehhhccCHHHHHhcCEEEEEeCCHHHHHH-HHHHHHHHHhCCCH
Confidence 5432111 011 1111 11234556666 777778888874 6877777777 555553 4456655
No 103
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.10 E-value=4.1e-12 Score=107.16 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=66.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--------CCCCC-CcccC----------------hhhh-
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--------ENFDY-PVAMD----------------IREL- 56 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--------~~~~y-~~~~~----------------i~e~- 56 (248)
.+++|+||||||||||+++|+|++ | |++.+ |.+... ..+.| +++.. +..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 468999999999999999999998 5 89988 654311 22333 11100 0000
Q ss_pred -----hhHHHHHHHhCCCCCCchhhhHHhhhhhHH--HHH-----HHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHH
Q 025795 57 -----ISLEDVMEELGLGPNGGLIYCMEHLEDNLD--DWL-----AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFV 123 (248)
Q Consensus 57 -----i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~--~~L-----a~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll 123 (248)
-.++++++..... ... ..++++++ +++ ++++.. +|+++++|||++ +|..+...+. +.+
T Consensus 100 ~g~~~~~i~~~l~~~~~~-----il~-~~lsggq~qR~~i~~~~~~~~ll~--~~~~~~Lde~~~~~d~~~~~~i~-~~l 170 (218)
T 1z6g_A 100 YGTLKSEYDKAKEQNKIC-----LFE-MNINGVKQLKKSTHIKNALYIFIK--PPSTDVLLSRLLTRNTENQEQIQ-KRM 170 (218)
T ss_dssp EEEEHHHHHHHHHTTCEE-----EEE-ECHHHHHHHTTCSSCCSCEEEEEE--CSCHHHHHHHHHHTCCCCHHHHH-HHH
T ss_pred CCCcHHHHHHHHhCCCcE-----EEE-ecHHHHHHHHHHhcCCCcEEEEEe--CcCHHHHHHHHHhcCCCCHHHHH-HHH
Confidence 1134444432210 000 11233333 455 456666 889999999998 9988877776 444
Q ss_pred HHH
Q 025795 124 DHL 126 (248)
Q Consensus 124 ~~l 126 (248)
..+
T Consensus 171 ~~~ 173 (218)
T 1z6g_A 171 EQL 173 (218)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.08 E-value=7.4e-10 Score=91.81 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhh-----hHHHHHHHhCCCCCCchhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELI-----SLEDVMEELGLGPNGGLIYC 77 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i-----~~~~~m~~~~L~~~~~~~~~ 77 (248)
-+++|+||||||||||++.+++ . .++.+.+...+.. +.+ -.+.+.. ..+++++.+.+....
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 86 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG-----FSP-ERLVQMAETRGLNPEEALSRFILFTPS----- 86 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC-----CCH-HHHHHHHHTTTCCHHHHHHHEEEECCT-----
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC-----CCH-HHHHHHHHhcCCChHHHhhcEEEEecC-----
Confidence 4689999999999999999999 3 3455555443221 000 0011100 012222222211110
Q ss_pred HHhhhhhH--HHHHHHHHccCCCCCEEEEeCCCc-cCHHhH--------HHHHHHHHHHHHh-CCCeEEEEE
Q 025795 78 MEHLEDNL--DDWLAEELDNYLDDDYLVFDCPGQ-IELFTH--------VPVLRNFVDHLKS-RNFNVCAVY 137 (248)
Q Consensus 78 ~~~l~~~~--~~~La~~l~~~~~p~~lilDEPt~-LD~~~~--------~~~~~~ll~~l~~-~~~~ii~v~ 137 (248)
-...+ ....++++... +|+++++|||++ +|.... ..++ +.++++.+ .+.++++++
T Consensus 87 ---~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~-~~L~~l~~~~~~~vi~~~ 153 (220)
T 2cvh_A 87 ---DFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQL-QVLLWIARKHNIPVIVIN 153 (220)
T ss_dssp ---TTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHH-HHHHHHHHHHTCCEEEEE
T ss_pred ---CHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHH-HHHHHHHHHcCCEEEEEe
Confidence 00111 14455667661 499999999999 887432 2233 33555543 477877663
No 105
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.05 E-value=1.6e-09 Score=91.03 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCCC-----CCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR--HCET-----VRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g--~l~~-----~~G~i~i~~~d 39 (248)
-+++|+||||||||||++.+++ ..++ ..|.+++.+.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4689999999999999999999 4544 45677776654
No 106
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.03 E-value=4.8e-11 Score=101.04 Aligned_cols=114 Identities=11% Similarity=0.159 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceEEEeccCCCC---CCCCC-CcccChhhhhhHHHHHHHhCCCCCCchhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTMHIVNLDPAA---ENFDY-PVAMDIRELISLEDVMEELGLGPNGGLIY 76 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i~i~~~d~~~---~~~~y-~~~~~i~e~i~~~~~m~~~~L~~~~~~~~ 76 (248)
-+++|+||||||||||+++|+|..+| ..|.|.+.+.++.. ..+.| +++... .......-.+-.+... .
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~-----f~~~~~~~~f~E~~~~-~ 90 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE-----FKEMISRDAFLEHAEV-F 90 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH-----HHHHHHTTCEEEEEEE-T
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH-----HHHHHhcCHHHHHHHH-H
Confidence 47899999999999999999999985 68889888876643 23445 222111 1111110000001000 0
Q ss_pred hHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 77 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 77 ~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...+.... ..+. .+.. .++++|+| +|+.+...+. +.+. .+.+++++
T Consensus 91 -~~~yg~~~-~~v~-~~l~--~G~illLD----LD~~~~~~i~-~~l~----~~~tI~i~ 136 (219)
T 1s96_A 91 -GNYYGTSR-EAIE-QVLA--TGVDVFLD----IDWQGAQQIR-QKMP----HARSIFIL 136 (219)
T ss_dssp -TEEEEEEH-HHHH-HHHT--TTCEEEEE----CCHHHHHHHH-HHCT----TCEEEEEE
T ss_pred -hccCCCCH-HHHH-HHHh--cCCeEEEE----ECHHHHHHHH-HHcc----CCEEEEEE
Confidence 00010111 2233 3344 68999999 9999987777 4433 45565544
No 107
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.00 E-value=7.1e-10 Score=98.42 Aligned_cols=91 Identities=23% Similarity=0.309 Sum_probs=62.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
+.+++|+|||||||||+++.|++++.+.+|+|.+.+.|+... . ..+. +..+.+..++...... ..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~------~--a~eq--L~~~~~~~gl~~~~~~-----s~ 168 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA------A--AIEQ--LKIWGERVGATVISHS-----EG 168 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH------H--HHHH--HHHHHHHHTCEEECCS-----TT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH------H--HHHH--HHHHHHHcCCcEEecC-----Cc
Confidence 468999999999999999999999999999999998875321 0 1111 3445566665321100 00
Q ss_pred hhhHH---HHHHHHHccCCCCCEEEEeCCCc
Q 025795 82 EDNLD---DWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 82 ~~~~~---~~La~~l~~~~~p~~lilDEPt~ 109 (248)
....+ ..+++++.. +|+++|+|||+.
T Consensus 169 ~~~~~v~~~al~~a~~~--~~dvvIiDtpg~ 197 (306)
T 1vma_A 169 ADPAAVAFDAVAHALAR--NKDVVIIDTAGR 197 (306)
T ss_dssp CCHHHHHHHHHHHHHHT--TCSEEEEEECCC
T ss_pred cCHHHHHHHHHHHHHhc--CCCEEEEECCCc
Confidence 00011 367777888 999999999996
No 108
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=8.1e-10 Score=98.40 Aligned_cols=116 Identities=13% Similarity=0.237 Sum_probs=58.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh-CCCCCCceEEEeccCCCC-----CCCCCCcc-----c-----ChhhhhhHHHHHHHhCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYR-HCETVRRTMHIVNLDPAA-----ENFDYPVA-----M-----DIRELISLEDVMEELGL 68 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g-~l~~~~G~i~i~~~d~~~-----~~~~y~~~-----~-----~i~e~i~~~~~m~~~~L 68 (248)
+.|.||||+||||+++++++ +..+..|.+.+.|.+... ..+.+.+. + ...+...+++.++.+.-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHH
Confidence 78999999999999999999 788899999887754321 11111000 0 00000012223322211
Q ss_pred CCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 69 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
... ..... .+ ..+.. +|+++|+|||+++|..+...+. +.+++.. .+.+++++
T Consensus 119 ~~~------~~~~~-~l-----s~l~~--~~~vlilDE~~~L~~~~~~~L~-~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 119 MEQ------VDFQD-SK-----DGLAH--RYKCVIINEANSLTKDAQAALR-RTMEKYS-KNIRLIMV 170 (354)
T ss_dssp TTC--------------------------CCEEEEEECTTSSCHHHHHHHH-HHHHHST-TTEEEEEE
T ss_pred hcc------ccccc-cc-----cccCC--CCeEEEEeCccccCHHHHHHHH-HHHHhhc-CCCEEEEE
Confidence 100 00000 00 01344 8999999999999998887777 7777653 34455444
No 109
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=7.3e-10 Score=97.71 Aligned_cols=108 Identities=17% Similarity=0.070 Sum_probs=71.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCC--chhhhHH
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNG--GLIYCME 79 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~--~~~~~~~ 79 (248)
+.+++++|+||+||||+++.+++++.+.+|+|.+.+.|+.... .. +. ...+.+..++.-.. ....+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~-------~~-~q--l~~~~~~~~l~~~~~~~~~~p~- 166 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA-------AR-EQ--LRLLGEKVGVPVLEVMDGESPE- 166 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH-------HH-HH--HHHHHHHHTCCEEECCTTCCHH-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh-------HH-HH--HHHhcccCCeEEEEcCCCCCHH-
Confidence 3578899999999999999999999999999999998864311 01 11 22344555553211 000011
Q ss_pred hhhhhHHHHHHHHHccCCCCCEEEEeCC-Cc-cCHHhHHHHHHHHHHHH
Q 025795 80 HLEDNLDDWLAEELDNYLDDDYLVFDCP-GQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 80 ~l~~~~~~~La~~l~~~~~p~~lilDEP-t~-LD~~~~~~~~~~ll~~l 126 (248)
.+ ++.+++.+... +++++|+||| +. +|......+. ++.+.+
T Consensus 167 ~l---~~~~l~~~~~~--~~D~viiDtpp~~~~d~~~~~~l~-~~~~~~ 209 (295)
T 1ls1_A 167 SI---RRRVEEKARLE--ARDLILVDTAGRLQIDEPLMGELA-RLKEVL 209 (295)
T ss_dssp HH---HHHHHHHHHHH--TCCEEEEECCCCSSCCHHHHHHHH-HHHHHH
T ss_pred HH---HHHHHHHHHhC--CCCEEEEeCCCCccccHHHHHHHH-HHhhhc
Confidence 11 23566666557 8999999999 45 8877776666 665555
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.00 E-value=1.6e-10 Score=104.58 Aligned_cols=128 Identities=10% Similarity=0.021 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCC----ceEEEeccCCCCCCCCCCcccChhhhhhH-H-HH----HH---HhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVR----RTMHIVNLDPAAENFDYPVAMDIRELISL-E-DV----ME---ELGLG 69 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~----G~i~i~~~d~~~~~~~y~~~~~i~e~i~~-~-~~----m~---~~~L~ 69 (248)
-.++|+||||||||||+++|+|+++|.. |++++.+..... ...+.. .+.+ .+.. . +. .. .+-+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~-~~~~~~-~~~~-~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD-EQAMQY-SDYP-QMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSC-TTSSCT-TTHH-HHHHHHHHHHHHHHHHCSSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCC-cccCCh-hHHH-HHHHHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999998 887764211111 111111 0111 1211 0 00 01 01111
Q ss_pred CCCc-hhhhHHhh-hhhHHHHHHHHHc-cCCCCCEEEEeC---CC------c-cCHHhHHHHHHHHHHHHH-hCCCeEEE
Q 025795 70 PNGG-LIYCMEHL-EDNLDDWLAEELD-NYLDDDYLVFDC---PG------Q-IELFTHVPVLRNFVDHLK-SRNFNVCA 135 (248)
Q Consensus 70 ~~~~-~~~~~~~l-~~~~~~~La~~l~-~~~~p~~lilDE---Pt------~-LD~~~~~~~~~~ll~~l~-~~~~~ii~ 135 (248)
.... ........ .++.+..++++.. . +|+++++|| |+ . +|...+..+. +.++++. +.+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~-~~l~~l~~~~~~~ili 324 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFLDSMIKEY--PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ-QLLKKLLDKYKVPYIE 324 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHHHHHHHHS--CCSEEEEEECCCC-----------CCSHHHHH-HHHHHHHHGGGCCCEE
T ss_pred eCCchHHHHHHHHHcCCCCHHHHHHHhhc--CCCEEEECCCCCCcccCCCcCCccHHHHHHHH-HHHHHHHHHcCCCEEE
Confidence 1100 00000111 1122255555543 5 899999999 64 4 8888888888 6666654 34777765
Q ss_pred E
Q 025795 136 V 136 (248)
Q Consensus 136 v 136 (248)
+
T Consensus 325 l 325 (365)
T 1lw7_A 325 I 325 (365)
T ss_dssp E
T ss_pred e
Confidence 5
No 111
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.98 E-value=4.5e-11 Score=102.00 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---hCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~---g~l~~~~G~i~i~~~d 39 (248)
.+++|+|||||||||+++.|+ |+..++.|++.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 578999999999999999999 9999999998877643
No 112
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.97 E-value=2.6e-10 Score=105.93 Aligned_cols=143 Identities=9% Similarity=-0.018 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC---CCC------------CCCCC-Cc-ccChhhhhhHHHH---
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD---PAA------------ENFDY-PV-AMDIRELISLEDV--- 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d---~~~------------~~~~y-~~-~~~i~e~i~~~~~--- 62 (248)
-+++|+||||||||||+++|+|+.+|+.|.|.++|.. ... ..+.| .+ +.......++.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999973 211 11222 11 2223333332221
Q ss_pred -HHHhCC-CCCC-chhhhHHhhhhhH-HHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh---C-CC-e
Q 025795 63 -MEELGL-GPNG-GLIYCMEHLEDNL-DDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS---R-NF-N 132 (248)
Q Consensus 63 -m~~~~L-~~~~-~~~~~~~~l~~~~-~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~---~-~~-~ 132 (248)
.+.++- +..- ........+++++ ++.+| +. +|++ ++ +|+.++..+. ++++++.+ . |. |
T Consensus 238 ~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~--~p~~------t~glD~~~~~~l~-~ll~r~~~~~~~~GsiT 305 (438)
T 2dpy_A 238 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IG--EPPA------TKGYPPSVFAKLP-ALVERAGNGIHGGGSIT 305 (438)
T ss_dssp HHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TT--CCCC------SSSCCTTHHHHHH-HHHTTCSCCSTTSCEEE
T ss_pred HHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hC--CCcc------cccCCHHHHHHHH-HHHHHHHhccCCCCccc
Confidence 111211 1110 0011233445544 24444 45 7776 77 9999999988 88888754 2 42 2
Q ss_pred EEEEEecccccccChHHHHHHHHHHHH
Q 025795 133 VCAVYLLDSQFITDVTKFISGCMASLS 159 (248)
Q Consensus 133 ii~v~l~d~~~~~d~~~~~s~~l~~~~ 159 (248)
.+.+-++.+|.+. ..+++.++....
T Consensus 306 ~~~tVlv~tHdl~--~~iad~v~~l~d 330 (438)
T 2dpy_A 306 AFYTVLTEGDDQQ--DPIADSARAILD 330 (438)
T ss_dssp EEEEEECSSSCSC--CHHHHHHHHHSS
T ss_pred ceeEEEEeCCCcc--chhhceEEEEeC
Confidence 2333356778777 445666655433
No 113
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.95 E-value=1e-09 Score=98.96 Aligned_cols=145 Identities=10% Similarity=0.059 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC--CCCC------------C--CcccChhhhhhH----HHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA--ENFD------------Y--PVAMDIRELISL----EDV 62 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~--~~~~------------y--~~~~~i~e~i~~----~~~ 62 (248)
-+++|+||||||||||+++|+|+.+|+.|.+.+.|.++.. +.+. + ..+....+.+.. ..+
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ 151 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTI 151 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998865311 0000 0 001112222221 111
Q ss_pred HHHh-CCCCCCc-hhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHh--CCC-eEEEE
Q 025795 63 MEEL-GLGPNGG-LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKS--RNF-NVCAV 136 (248)
Q Consensus 63 m~~~-~L~~~~~-~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~--~~~-~ii~v 136 (248)
.+.+ ..+.+-- .......++.++ ..++.+ .. +|++ +. +|+..+..+. ++++++.+ .|. |.+.+
T Consensus 152 ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~--~p~~------t~Gldp~~~~~l~-~ller~~~~~~GsiT~~~t 220 (347)
T 2obl_A 152 AEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SG--EPDV------RGGFPPSVFSSLP-KLLERAGPAPKGSITAIYT 220 (347)
T ss_dssp HHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TT--CCCC------BTTBCHHHHHHHH-HHHTTCEECSSSEEEEEEE
T ss_pred HHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cC--CCCc------ccCCCHHHHHHHH-HHHHHHhCCCCCCeeeEEE
Confidence 1111 1111100 001234455555 334433 34 6655 67 9999999988 88888864 343 33334
Q ss_pred EecccccccChHHHHHHHHHHHHH
Q 025795 137 YLLDSQFITDVTKFISGCMASLSA 160 (248)
Q Consensus 137 ~l~d~~~~~d~~~~~s~~l~~~~~ 160 (248)
-++.+|.+. ..+++.+.....+
T Consensus 221 Vl~~thdl~--~~i~d~v~~i~dG 242 (347)
T 2obl_A 221 VLLESDNVN--DPIGDEVRSILDG 242 (347)
T ss_dssp EECCSSCCC--CHHHHHHHHHCSE
T ss_pred EEEeCCCCC--ChhhhheEEeeCc
Confidence 467788887 4566766665444
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=6.5e-10 Score=102.68 Aligned_cols=125 Identities=15% Similarity=0.237 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEeccCC-C-------CCCCCCCcccChhhhhhHHHHHHHhCCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVNLDP-A-------AENFDYPVAMDIRELISLEDVMEELGLGPNG 72 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~~d~-~-------~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~ 72 (248)
+-++|+||||||||||+++|+|...+..| .+.+.+... . .+.....+.+++.|++........ .
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~ 105 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------S 105 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc------h
Confidence 55799999999999999999999875433 111110000 0 011111224455555543322110 0
Q ss_pred chhhh-HHhhhhhH------HHHHHHHHccCCCCC---EEEEeCCC-c-cCHHhHHHHHHHHHHHHHhCCCeEEEE-Eec
Q 025795 73 GLIYC-MEHLEDNL------DDWLAEELDNYLDDD---YLVFDCPG-Q-IELFTHVPVLRNFVDHLKSRNFNVCAV-YLL 139 (248)
Q Consensus 73 ~~~~~-~~~l~~~~------~~~La~~l~~~~~p~---~lilDEPt-~-LD~~~~~~~~~~ll~~l~~~~~~ii~v-~l~ 139 (248)
..... .+++...+ ++.+++++.. +|+ ++++|||| . +|+... .+++.+.. +.++++| +=.
T Consensus 106 ~~~~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L~~~d~-----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 106 NCWQPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGLKPLDI-----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSCCHHHH-----HHHHHHTT-TSEEEEEEEST
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCCCHHHH-----HHHHHHhc-cCcEEEEEEcc
Confidence 00000 11111111 1346777777 899 99999998 5 887653 44566643 5665554 444
Q ss_pred cc
Q 025795 140 DS 141 (248)
Q Consensus 140 d~ 141 (248)
|.
T Consensus 178 Dl 179 (418)
T 2qag_C 178 DT 179 (418)
T ss_dssp TS
T ss_pred cC
Confidence 54
No 115
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.91 E-value=3.7e-10 Score=90.87 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
-+++|+||||||||||+|+|+|.+ |.+|+|.+.|.+.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 478999999999999999999999 9999999988765
No 116
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.88 E-value=3.4e-08 Score=92.72 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++|+|||||||||+++.|+|++++.+|+|.+.+.|.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 468999999999999999999999999999999988765
No 117
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.87 E-value=1.1e-10 Score=103.65 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec-cCCC------C-CCCCCCcccChhhhhhHHHHHHHhCCCCCCch
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN-LDPA------A-ENFDYPVAMDIRELISLEDVMEELGLGPNGGL 74 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~-~d~~------~-~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~ 74 (248)
-+++|+||||||||||+++|+|++ +|+|.... .++. . +++.+.++.+ + .+.+.++.+ + |++-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~--~--~~~~~i~~~-L-~~gld 197 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDAT--H--ACWRYFDTY-L-RNALD 197 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEEC--H--HHHHHHHHT-T-TGGGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCcccc--H--HHHHHHHHH-h-HccCC
Confidence 478999999999999999999998 89986533 2221 0 1222211111 1 245555553 2 12111
Q ss_pred hhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHH
Q 025795 75 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVL 119 (248)
Q Consensus 75 ~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~ 119 (248)
...++++++.. ||+++. +|++|| |+ ||+.+...+.
T Consensus 198 ---g~~LSgGqkQR-ARAll~--~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 198 ---GYPVSIDRKHK-AAVQIK--APPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp ---TCCEECCCSSC-CCCEEC--CCCEEE----EESSCSTTCGGGG
T ss_pred ---ccCcCHHHHHH-HHHHhC--CCCEEE----ECCCCHHHHHHHH
Confidence 12455555444 999999 999999 88 9999886654
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.87 E-value=1.2e-08 Score=90.15 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~d 39 (248)
+-++|+||||+|||||++.|.|. ..|.+| +.+.|.+
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~ 55 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEK 55 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcc
Confidence 56799999999999999999997 888888 6655543
No 119
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.86 E-value=8e-09 Score=94.86 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHH--HhCCCCC-----CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCC----
Q 025795 3 YAQLVIGPAGSGKSTYCSSL--YRHCETV-----RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPN---- 71 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l--~g~l~~~-----~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~---- 71 (248)
-+++|+||||||||||++.+ .+..++. .+.+++.+.+. + + ...+..+.+.+++.+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~------~----~---~~rl~~~a~~~gl~~~~vle 245 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT------F----R---PVRLVSIAQRFGLDPDDALN 245 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC------C----C---HHHHHHHHHHTTCCHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc------c----C---HHHHHHHHHHcCCChHhHhh
Confidence 46899999999999999954 4666553 23566665432 1 0 1112333444444321
Q ss_pred -Cch--hhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHHhH------------HHHHHHHHHHHHh-CCCeEE
Q 025795 72 -GGL--IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTH------------VPVLRNFVDHLKS-RNFNVC 134 (248)
Q Consensus 72 -~~~--~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~~~------------~~~~~~ll~~l~~-~~~~ii 134 (248)
... ....+.....+ ..+...+... +|+++++|+|+. ++.... ..++ ..++++.+ .|.+++
T Consensus 246 ni~~~~~~~~~~~~~~l-~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il-~~L~~lake~gitVI 322 (400)
T 3lda_A 246 NVAYARAYNADHQLRLL-DAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM-RALQRLADQFGVAVV 322 (400)
T ss_dssp TEEEEECCSHHHHHHHH-HHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHH-HHHHHHHHHHCCEEE
T ss_pred cEEEeccCChHHHHHHH-HHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHH-HHHHHHHHHcCCEEE
Confidence 000 00000000111 1112222222 799999999998 775322 3445 55566654 488888
Q ss_pred EEE
Q 025795 135 AVY 137 (248)
Q Consensus 135 ~v~ 137 (248)
+|.
T Consensus 323 lv~ 325 (400)
T 3lda_A 323 VTN 325 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 120
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.86 E-value=1.1e-09 Score=90.09 Aligned_cols=125 Identities=11% Similarity=-0.013 Sum_probs=65.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC-----CCCCceEEEec-------c---CCCCCC---------------CC-CC--
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC-----ETVRRTMHIVN-------L---DPAAEN---------------FD-YP-- 48 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l-----~~~~G~i~i~~-------~---d~~~~~---------------~~-y~-- 48 (248)
.+.++|+|+||||||||++.++|.. .|+.|.+...+ . |..... +. |.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 105 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEK 105 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHh
Confidence 3679999999999999999999988 77777654422 0 110000 00 00
Q ss_pred -c---------ccCh--hh-hhhHHHHHHHhCCCCCCchhhhHHhhhhhHH---HHHHHHHccCCCCCEEEEeCCCc-cC
Q 025795 49 -V---------AMDI--RE-LISLEDVMEELGLGPNGGLIYCMEHLEDNLD---DWLAEELDNYLDDDYLVFDCPGQ-IE 111 (248)
Q Consensus 49 -~---------~~~i--~e-~i~~~~~m~~~~L~~~~~~~~~~~~l~~~~~---~~La~~l~~~~~p~~lilDEPt~-LD 111 (248)
. +.+- .. ...+.++++..++....- ....+.++++.+ ...+++++. +|..++.|||++ +|
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~nK~D~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sal~ 182 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL-LTKADKLASGARKAQLNMVREAVL--AFNGDVQVETFSSLK 182 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEE-EECGGGSCHHHHHHHHHHHHHHHG--GGCSCEEEEECBTTT
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEE-EecccCCCchhHHHHHHHHHHHHH--hcCCCCceEEEeecC
Confidence 0 0000 00 011334445555432110 011244444321 456677777 788889999999 99
Q ss_pred HHhHHHHHHHHHHHHHhCC
Q 025795 112 LFTHVPVLRNFVDHLKSRN 130 (248)
Q Consensus 112 ~~~~~~~~~~ll~~l~~~~ 130 (248)
.....+++ +.+.++.+++
T Consensus 183 ~~~~~~l~-~~l~~~~~~~ 200 (210)
T 1pui_A 183 KQGVDKLR-QKLDTWFSEM 200 (210)
T ss_dssp TBSHHHHH-HHHHHHHC--
T ss_pred CCCHHHHH-HHHHHHHhhc
Confidence 99999998 6666665444
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.85 E-value=1.7e-08 Score=91.31 Aligned_cols=124 Identities=13% Similarity=0.057 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-.++|+||||||||||+++|+|+++|++|.|.+.|... +...........+...+. .++. ...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e----~~~~~~~~~v~~v~~q~~----~~~~---------~~~ 238 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE----LFLPDHPNHVHLFYPSEA----KEEE---------NAP 238 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC----CCCTTCSSEEEEECC-----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc----cCccccCCEEEEeecCcc----cccc---------ccc
Confidence 36899999999999999999999999999999987421 111000000000000000 0000 011
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHH
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (248)
..++..++.++.. .|+.+++|||..- +.. ++++.+.....+++.+ + |. .++...+..+...
T Consensus 239 ~t~~~~i~~~l~~--~pd~~l~~e~r~~------~~~-~~l~~l~~g~~~~l~t-~---H~-~~~~~~~~Rl~~l 299 (361)
T 2gza_A 239 VTAATLLRSCLRM--KPTRILLAELRGG------EAY-DFINVAASGHGGSITS-C---HA-GSCELTFERLALM 299 (361)
T ss_dssp CCHHHHHHHHTTS--CCSEEEESCCCST------HHH-HHHHHHHTTCCSCEEE-E---EC-SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhc--CCCEEEEcCchHH------HHH-HHHHHHhcCCCeEEEE-E---CC-CCHHHHHHHHHHH
Confidence 1234777888888 9999999999852 233 5566664322233322 1 22 2355555555443
No 122
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.80 E-value=1.3e-08 Score=89.71 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=56.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
.+++++|||||||||+++.|++.+.+.+| +|.+.+.|+.. ....+.+ ..+.+..|+...... -
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r--------~~a~eqL--~~~~~~~gl~~~~~~------~ 169 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR--------IAAVEQL--KTYAELLQAPLEVCY------T 169 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS--------TTHHHHH--HHHHTTTTCCCCBCS------S
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc--------chHHHHH--HHHHHhcCCCeEecC------C
Confidence 47899999999999999999999988667 89999887631 1222322 222333444322110 1
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~ 109 (248)
...++.++++ .. +++++|+|+|+.
T Consensus 170 ~~~l~~al~~--~~--~~dlvIiDT~G~ 193 (296)
T 2px0_A 170 KEEFQQAKEL--FS--EYDHVFVDTAGR 193 (296)
T ss_dssp HHHHHHHHHH--GG--GSSEEEEECCCC
T ss_pred HHHHHHHHHH--hc--CCCEEEEeCCCC
Confidence 1223345553 35 899999997764
No 123
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.79 E-value=2.6e-08 Score=89.33 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
.+++|+|+||+||||+++.|++.+.+.+|++.+.+.||..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 5789999999999999999999999999999999988854
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.78 E-value=5.2e-09 Score=96.71 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.0
Q ss_pred HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHH-HHhCCCeEEEE
Q 025795 87 DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDH-LKSRNFNVCAV 136 (248)
Q Consensus 87 ~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~-l~~~~~~ii~v 136 (248)
+.++++|.. +.+++++|+|+. +.+.....+. +.+++ +...|..++.+
T Consensus 167 ieilk~L~~--~~~vI~Vi~KtD~Lt~~E~~~l~-~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 167 LVTMKKLDS--KVNIIPIIAKADAISKSELTKFK-IKITSELVSNGVQIYQF 215 (427)
T ss_dssp HHHHHHTCS--CSEEEEEESCGGGSCHHHHHHHH-HHHHHHHBTTBCCCCCC
T ss_pred HHHHHHHhh--CCCEEEEEcchhccchHHHHHHH-HHHHHHHHHcCCcEEec
Confidence 678888886 899999999998 9887777777 55554 77778777544
No 125
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.74 E-value=1.7e-08 Score=90.90 Aligned_cols=41 Identities=22% Similarity=0.436 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~ 43 (248)
.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.||...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 68999999999999999999999999999999999988653
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.73 E-value=6.8e-08 Score=89.46 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
+.+++++||+||||||++..|++++.+.+++|.+.+.|+.. +. ..+. +..+-+..++.-..... ..+ .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------~~--a~eq--L~~~~~~~gv~~~~~~~-~~d-p 164 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------PA--AYDQ--LLQLGNQIGVQVYGEPN-NQN-P 164 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------HH--HHHH--HHHHHHTTTCCEECCTT-CSC-H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------hh--HHHH--HHHHHHhcCCceeeccc-cCC-H
Confidence 46889999999999999999999999999999999887521 11 1111 22233334442111000 000 0
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc----cCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHH
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ----IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 157 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~ 157 (248)
..-....++.+... +++++|+|+|+. .|.....++. .+.+.+ +. ..+++| +|++.-.+....+.
T Consensus 165 ~~i~~~al~~a~~~--~~DvvIIDTaGr~~~~~d~~lm~el~-~i~~~~-~p-d~vlLV--lDa~~gq~a~~~a~----- 232 (433)
T 3kl4_A 165 IEIAKKGVDIFVKN--KMDIIIVDTAGRHGYGEETKLLEEMK-EMYDVL-KP-DDVILV--IDASIGQKAYDLAS----- 232 (433)
T ss_dssp HHHHHHHHHHTTTT--TCSEEEEEECCCSSSCCTTHHHHHHH-HHHHHH-CC-SEEEEE--EEGGGGGGGHHHHH-----
T ss_pred HHHHHHHHHHHHhc--CCCEEEEECCCCccccCCHHHHHHHH-HHHHhh-CC-cceEEE--EeCccchHHHHHHH-----
Confidence 00011334444445 899999999995 4555444444 544444 22 233333 67665443333221
Q ss_pred HHHHHh-hCCCeeeeecccccccc
Q 025795 158 LSAMVQ-LELPHVNILSKMDLVTN 180 (248)
Q Consensus 158 ~~~~~~-~~~p~~~vlsk~dll~~ 180 (248)
.++ .-.+..-|+||.|.-.+
T Consensus 233 ---~f~~~~~~~gVIlTKlD~~a~ 253 (433)
T 3kl4_A 233 ---RFHQASPIGSVIITKMDGTAK 253 (433)
T ss_dssp ---HHHHHCSSEEEEEECGGGCSC
T ss_pred ---HHhcccCCcEEEEeccccccc
Confidence 111 11234457888886443
No 127
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.72 E-value=1.7e-09 Score=92.28 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.++||+|||||||||++++|+|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999975
No 128
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.68 E-value=4.3e-09 Score=98.71 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=35.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~ 41 (248)
+++|+||||||||||+++|+|+++|++|+|.+.|.+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 68999999999999999999999999999999987653
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.68 E-value=4e-07 Score=76.84 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~ 29 (248)
+-++|+|++|+|||||++.|.|.....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~ 56 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFH 56 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCc
Confidence 568999999999999999999865443
No 130
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.68 E-value=3.9e-08 Score=82.59 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCc-c--CHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 98 DDDYLVFDCPGQ-I--ELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 98 ~p~~lilDEPt~-L--D~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+|+++++|+|+. . |....+..+..+.+.+++.|.+++++
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~ 169 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFV 169 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999998 5 55555566646655555678888776
No 131
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.68 E-value=1.9e-08 Score=88.99 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEE---eccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHI---VNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i---~~~d 39 (248)
.++||+||||||||||+++|+|++. |++|+|.+ +|..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 6899999999999999999999988 99999999 5544
No 132
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.66 E-value=1.8e-06 Score=69.16 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=61.2
Q ss_pred CCCEEEEeCCCc----cCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeeeee
Q 025795 98 DDDYLVFDCPGQ----IELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 172 (248)
Q Consensus 98 ~p~~lilDEPt~----LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~vl 172 (248)
+.++.++|.||- .+...+.... .+..... ......++++++|+..-...... . + ....-..+.|.+-|+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~-~---~~~~~~~~~p~i~v~ 140 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWK-RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-M-M---VEWMKSLNIPFTIVL 140 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHH-HHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-H-H---HHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHH-HHHHHHHhcCcCceEEEEEecCCCCCCHHHH-H-H---HHHHHHcCCCEEEEE
Confidence 346889999993 2222222222 3333332 22233445566775443222211 0 1 111223478999999
Q ss_pred cccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccccH--HHHHHHHhh
Q 025795 173 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRLLSQIMK 244 (248)
Q Consensus 173 sk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~--~~~~~~id~ 244 (248)
||+|+.... ..+ ...+.+.+....++-..|.+++..+.+ ..++..|-+
T Consensus 141 nK~Dl~~~~-~~~-----------------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 141 TKMDKVKMS-ERA-----------------------KKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp ECGGGSCGG-GHH-----------------------HHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred EChhcCChH-HHH-----------------------HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 999997543 111 111223334445566788888888877 666655543
No 133
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.65 E-value=4e-08 Score=80.11 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-----------CCceEEEecc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-----------VRRTMHIVNL 38 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-----------~~G~i~i~~~ 38 (248)
+.++|+|+||||||||++.++|...+ ..|.+.+.|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 67899999999999999999998765 4677777764
No 134
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.62 E-value=3.8e-06 Score=69.23 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.-++|+|+.|+|||||++.+.|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 135
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.60 E-value=3.1e-08 Score=80.44 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
.+++|+|||||||||+++.|+|. +..|.|.+++.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 57899999999999999999998 678999998754
No 136
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.59 E-value=1.1e-07 Score=85.66 Aligned_cols=116 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-++.|.||||||||||+..++......+|.+.+...+.. ..+ ...+.+|+....-.+... .-.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-----~~~-----------~~a~~lG~~~~~l~i~~~-~~~ 124 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-----LDP-----------EYAKKLGVDTDSLLVSQP-DTG 124 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-----CCH-----------HHHHHTTCCGGGCEEECC-SSH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-----cCH-----------HHHHHcCCCHHHeEEecC-CCH
Confidence 468899999999999999988766556677777654321 110 013344443221111000 011
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCc-c----------CH---HhHHHHHHHHHHHH----HhCCCeEEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ-I----------EL---FTHVPVLRNFVDHL----KSRNFNVCAVY 137 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~-L----------D~---~~~~~~~~~ll~~l----~~~~~~ii~v~ 137 (248)
... ..+++++....+|+++++|+|+. + |. ...+.+. +.+++| ++.+.+++++.
T Consensus 125 e~~-l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~-~~l~~L~~~a~~~~~tVI~in 195 (349)
T 2zr9_A 125 EQA-LEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMS-QALRKMTGALNNSGTTAIFIN 195 (349)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHH-HHHHHHHHHHHHHTCEEEEEE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHH-HHHHHHHHHHHHhCCEEEEEe
Confidence 222 45566665422699999999998 5 21 1112222 445554 45688887763
No 137
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.59 E-value=2.8e-07 Score=81.27 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~ 41 (248)
.+++++|++|+||||++..+++.+.+.+++|.+.+.|+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 578899999999999999999999988999999998864
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.58 E-value=3e-08 Score=80.65 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
|..+++|+|||||||||+++.|++ +.+|.+.+.+.+.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 667899999999999999999998 5678899887654
No 139
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=2.1e-08 Score=89.98 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
.+++|+||||||||||+++|+|++.|++|+|.+.+.|+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 6799999999999999999999999999999999998854
No 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.55 E-value=2.7e-07 Score=79.69 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.++++|++|||||||++.+.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999999863
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.54 E-value=2.4e-08 Score=81.46 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCce
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRT 32 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~ 32 (248)
+++|+|||||||||++++|+|++++..|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 58999999999999999999998754443
No 142
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.53 E-value=4.7e-07 Score=81.37 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--CCCCCCceE
Q 025795 4 AQLVIGPAGSGKSTYCSSLYR--HCETVRRTM 33 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g--~l~~~~G~i 33 (248)
.++|+|++|||||||++.+.| +++...|.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 578999999999999999999 566666654
No 143
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.53 E-value=1e-08 Score=83.48 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLD 39 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d 39 (248)
|+.+++|+|++|||||||++.|.|++++. .|.|.+++.+
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 56689999999999999999999999998 7899888754
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.53 E-value=2.4e-08 Score=82.87 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCC---CceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV---RRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~---~G~i~i~~~d~ 40 (248)
+.+++|+||||||||||+++|+|++++. .|.|.++|...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 3689999999999999999999999853 56777666543
No 145
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.52 E-value=9.7e-07 Score=79.37 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAE 43 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~ 43 (248)
.++++|+|++|+||||++..+++.+...+.+|.+...||...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 368999999999999999999988776677888888887543
No 146
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.52 E-value=3.9e-09 Score=89.83 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
++|+|||||||||++++|+|++.|++|.|.+.|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 578999999999999999999999999999988764
No 147
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.51 E-value=9.3e-06 Score=65.26 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 148
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.51 E-value=1.8e-07 Score=93.78 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=75.7
Q ss_pred HHHhCCCCCCceEEEeccCCCC-------------CCCCCCc-ccC-h----hhhhhHHHHHHHhCCCCCC-chhhhHHh
Q 025795 21 SLYRHCETVRRTMHIVNLDPAA-------------ENFDYPV-AMD-I----RELISLEDVMEELGLGPNG-GLIYCMEH 80 (248)
Q Consensus 21 ~l~g~l~~~~G~i~i~~~d~~~-------------~~~~y~~-~~~-i----~e~i~~~~~m~~~~L~~~~-~~~~~~~~ 80 (248)
|..+.++|..+.|.+.|.+++. +++.+.. ... . .+.-...+.+..+|++... .+. ...
T Consensus 387 C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~r~--~~~ 464 (916)
T 3pih_A 387 CGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRS--ATT 464 (916)
T ss_dssp TCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTTSB--GGG
T ss_pred cccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCccccccCC--ccc
Confidence 3345678889999999976532 1111110 001 0 1111244667788887542 222 345
Q ss_pred hhhh--HHHHHHHHHccCCCCC--EEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 81 LEDN--LDDWLAEELDNYLDDD--YLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 81 l~~~--~~~~La~~l~~~~~p~--~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++ ++++||++|.. +|+ ++||||||+ ||+.....++ ++++++++.|.++++|
T Consensus 465 LSGGe~QRv~LAraL~~--~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 465 LSGGESQRIRLATQIGS--GLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNTVIVV 522 (916)
T ss_dssp CCHHHHHHHHHHHHHHT--TCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHhh--CCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCEEEEE
Confidence 6665 45999999998 766 999999999 9999999999 9999998779898877
No 149
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.51 E-value=2.1e-07 Score=73.90 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=43.7
Q ss_pred HhhhhhHH--HHH------HHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 79 EHLEDNLD--DWL------AEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 79 ~~l~~~~~--~~L------a~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
..+++|++ +.| |++++. +|+++|+||||+ ||+.++..+. ++++++.+.|.+++++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~--~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiiv 119 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAG--EISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILV 119 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHS--SCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcC--CCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEE
Confidence 45666654 433 478888 999999999999 9999999988 8888886667777665
No 150
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.50 E-value=6.1e-08 Score=86.49 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC--CCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE--TVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~--~~~G~i~i~~~d~ 40 (248)
++++||+|||||||||++++|.+++. +.+|.+.+...|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 57999999999999999999999987 5678888877664
No 151
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.48 E-value=6.1e-08 Score=89.43 Aligned_cols=38 Identities=32% Similarity=0.300 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
-+++|+|||||||||+++++.|++++.+|+|.+.+.++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 36899999999999999999999999999999998654
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=6.7e-08 Score=85.14 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE---eccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i---~~~d~ 40 (248)
.+++++||||||||||+++|+|+.+|+.|+|.+ .|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 468999999999999999999999999999998 66554
No 153
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.46 E-value=1.6e-07 Score=83.62 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++|+||||+||||++..|++++.+.+|+|.+.+.|+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357899999999999999999999999999999999886
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.46 E-value=5.3e-07 Score=80.56 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~-G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.+.|.||+|+||||+++.+++.+.+.. ..+...+... ..+..+ .+..+.+.++........ ......
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~---------~~~~~~--~~~~l~~~l~~~~~~~~~-~~~~~~ 113 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI---------YRNFTA--IIGEIARSLNIPFPRRGL-SRDEFL 113 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT---------CCSHHH--HHHHHHHHTTCCCCSSCC-CHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc---------CCCHHH--HHHHHHHHhCccCCCCCC-CHHHHH
Confidence 688999999999999999999887652 3333332111 011111 134455555543211000 011111
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHh---CCCeEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKS---RNFNVCAV 136 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~---~~~~ii~v 136 (248)
..+...+.....|.++++||+..++......+. .++..+.. .+..+|++
T Consensus 114 ----~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~-~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 114 ----ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFI-RLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp ----HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHH-HHTTCHHHHSSCCEEEEEE
T ss_pred ----HHHHHHHhhcCCeEEEEEECccccchHHHHHHH-HHHHhCCCCCcCCEEEEEE
Confidence 222222222226889999999999877766655 55554443 34455444
No 155
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.46 E-value=6.2e-08 Score=80.03 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++|+||+||||||+++.|++.+++.+|.+.+.+.|.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 368999999999999999999999988899999887764
No 156
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.44 E-value=2.2e-06 Score=66.49 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999974
No 157
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.44 E-value=9e-06 Score=75.40 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++++|++||||||++..|+.++...+.+|.+...|+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 468999999999999999999999888778898887775
No 158
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.43 E-value=6.9e-08 Score=79.79 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
-.++|+||||||||||+++|.|+++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4689999999999999999999875
No 159
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.43 E-value=4.5e-06 Score=77.07 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+.+++++||+||||||++..|++++.+.+++|.+.+.|+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 357889999999999999999999999999999998876
No 160
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=1.1e-07 Score=87.75 Aligned_cols=137 Identities=11% Similarity=0.110 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-----------CCCCceEEEec-cCCC-CCCCCCCcc----cCh-hhhhh----HHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC-----------ETVRRTMHIVN-LDPA-AENFDYPVA----MDI-RELIS----LED 61 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l-----------~~~~G~i~i~~-~d~~-~~~~~y~~~----~~i-~e~i~----~~~ 61 (248)
.++|+|+||||||||+++|+|.. .|..|.+.+.+ .... .+...+... ... ..... ++.
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~ 238 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 238 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence 47999999999999999999983 34444444432 1000 001111000 000 01000 111
Q ss_pred HHHHhCCCCCCchhhhHHhhhhhHH--HHHHHHHccCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEEEe
Q 025795 62 VMEELGLGPNGGLIYCMEHLEDNLD--DWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYL 138 (248)
Q Consensus 62 ~m~~~~L~~~~~~~~~~~~l~~~~~--~~La~~l~~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v~l 138 (248)
++..+++. .. ..+.++..++ ..+++++.. .|.++++ + +|+... .....+.+.+.+.+.+++.
T Consensus 239 lL~vvDls--~~---~~~~ls~g~~el~~la~aL~~--~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~--- 303 (416)
T 1udx_A 239 LLYVLDAA--DE---PLKTLETLRKEVGAYDPALLR--RPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLP--- 303 (416)
T ss_dssp EEEEEETT--SC---HHHHHHHHHHHHHHHCHHHHH--SCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEE---
T ss_pred hhEEeCCc--cC---CHHHHHHHHHHHHHHhHHhhc--CCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEE---
Confidence 12222333 11 1223333322 667778888 9999999 7 999877 4453555555555766653
Q ss_pred cccccccChHHHHHHHH
Q 025795 139 LDSQFITDVTKFISGCM 155 (248)
Q Consensus 139 ~d~~~~~d~~~~~s~~l 155 (248)
++++.-.....++..+.
T Consensus 304 iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 304 VSALTGAGLPALKEALH 320 (416)
T ss_dssp CCTTTCTTHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHH
Confidence 44555555555555443
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.41 E-value=1.2e-07 Score=77.57 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~ 38 (248)
.+++|+|||||||||++++|+|+++ .+.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~ 39 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA----EIKISIS 39 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC----CeEEece
Confidence 5789999999999999999999864 4555543
No 162
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.40 E-value=8.9e-07 Score=76.79 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
++.++++|++|||||||++.+.|.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999875
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.39 E-value=1.1e-06 Score=79.35 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-++.|.||||||||||+..++....+.+|.+.+....... .+ ...+++++.+..-..... .-.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~-----~~-----------~ra~rlgv~~~~l~i~~~-~~~ 124 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL-----DP-----------VYAKNLGVDLKSLLISQP-DHG 124 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-----CH-----------HHHHHHTCCGGGCEEECC-SSH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-----ch-----------HHHHHcCCchhhhhhhhc-cCH
Confidence 4688999999999999999999888888887665432111 00 034455554322111110 011
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCc
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQ 109 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~ 109 (248)
... .++++.+.....|+++++|+-+.
T Consensus 125 e~~-l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 125 EQA-LEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHH-HHHHHHHHHTSCCSEEEEECTTT
T ss_pred HHH-HHHHHHHhhhcCCCeEEehHhhh
Confidence 122 34444444322799999998665
No 164
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.37 E-value=1.9e-07 Score=88.28 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
.+++|+|||||||||++++|+|+++|+.|.|.+.+.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4589999999999999999999999999999998753
No 165
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.37 E-value=2.9e-08 Score=87.28 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV 29 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~ 29 (248)
+++++|.||+|||||||++.|.+++.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4789999999999999999999998764
No 166
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.34 E-value=1.4e-07 Score=83.78 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC--------CCCCceEEEeccCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC--------ETVRRTMHIVNLDPA 41 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l--------~~~~G~i~i~~~d~~ 41 (248)
-+++|+|+||||||||++.|.|.. .++.|+|.++|.++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 478999999999999999999997 788999999987654
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.1e-06 Score=68.11 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++|+|++|+|||||++.+.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999853
No 168
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.33 E-value=2.7e-07 Score=81.38 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE---eccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI---VNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i---~~~d~ 40 (248)
.+++++||||||||||+++|. ..+|..|+|.+ .|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 478999999999999999999 99999999998 77554
No 169
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.32 E-value=2.1e-06 Score=75.65 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
-.++|+|++|+|||||++.+.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999974
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.32 E-value=2e-07 Score=75.64 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d~ 40 (248)
..+++|+||||||||||++.|.+.+++ ..|.|......|
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 357899999999999999999998764 456665544433
No 171
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.31 E-value=2.7e-07 Score=75.95 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
.+++|+|||||||||+++.|+|.+ |.+.+.+.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 479999999999999999999976 7888877543
No 172
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.31 E-value=1.7e-07 Score=78.76 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLY-RHCET 28 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~-g~l~~ 28 (248)
.+++|+|||||||||++++|+ |++++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----C
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 478999999999999999999 99854
No 173
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.30 E-value=3.3e-06 Score=65.37 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.9
Q ss_pred CC-eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 1 MG-YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 1 ~~-~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
|+ +-++++|+.|+|||||++.+.+-
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC
Confidence 43 56899999999999999999874
No 174
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.30 E-value=3.5e-07 Score=82.73 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEEEe-ccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMHIV-NLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~i~-~~d 39 (248)
.+++|+||||||||||+++|+|... +..|.|.+. |.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g 254 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG 254 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC
Confidence 3689999999999999999999999 999999886 543
No 175
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.30 E-value=4.9e-06 Score=68.46 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++|+|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999854
No 176
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.29 E-value=6.1e-06 Score=72.52 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
..++|+|++|+|||||++.|.|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999985
No 177
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.29 E-value=1.1e-05 Score=62.70 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999999863
No 178
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.27 E-value=1.2e-05 Score=63.77 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56899999999999999999964
No 179
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.27 E-value=1.1e-05 Score=62.62 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 67899999999999999999863
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.27 E-value=4.4e-07 Score=74.25 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G 31 (248)
+.+++|+|||||||||+++.|++.+.|..|
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 357899999999999999999999866544
No 181
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.27 E-value=3.2e-07 Score=73.16 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
|+.+++|+|||||||||+++.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999999864
No 182
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.26 E-value=9.2e-08 Score=82.00 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH---hCCCCCCceEE
Q 025795 3 YAQLVIGPAGSGKSTYCSSLY---RHCETVRRTMH 34 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~---g~l~~~~G~i~ 34 (248)
.+++|+|||||||||+++.|+ |+..++.|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 579999999999999999999 99888888887
No 183
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.24 E-value=1.5e-05 Score=69.18 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.+.++++|++|+|||||++.++|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467899999999999999999985
No 184
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=4.6e-07 Score=76.40 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
.+++|.|||||||||+++.|+|+ +|+|.+.+.+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 57999999999999999999998 7889888764
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.24 E-value=2.8e-07 Score=75.83 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceE--EEeccCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM--HIVNLDP 40 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i--~i~~~d~ 40 (248)
+.+++|+|||||||||+.+.|++.+. ..|.+ ++++.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 36899999999999999999999987 67877 7776543
No 186
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.23 E-value=4.4e-06 Score=66.04 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.23 E-value=6e-07 Score=73.86 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
|+++++|+||+||||||+++.|++
T Consensus 1 m~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999998
No 188
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.23 E-value=1.5e-06 Score=80.39 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
.+++++|++|+||||++..|++.+...+.+|.+...|+..... + +. +..+.+..|+.-........+ ..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-------~-~q--L~~~~~~~gv~v~~~~~~~~d-p~ 168 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-------Y-EQ--LKQLAEKIHVPIYGDETRTKS-PV 168 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-------G-GS--SHHHHHHSSCCEECCSSSCCS-SS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-------H-HH--HHHhhhccCcceEecCCCCCC-HH
Confidence 4689999999999999999999987777789999888743111 1 11 122333444421100000000 00
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHH
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 162 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~ 162 (248)
.-....+... . +.+++|+|+|+.+.. ...++ .-+..+...-..-.+++.+|+..-.+... ....+
T Consensus 169 ~i~~~~l~~~--~--~~D~vIIDT~G~~~~--~~~l~-~~l~~i~~~~~~d~vllVvda~~g~~~~~--------~~~~~ 233 (432)
T 2v3c_C 169 DIVKEGMEKF--K--KADVLIIDTAGRHKE--EKGLL-EEMKQIKEITNPDEIILVIDGTIGQQAGI--------QAKAF 233 (432)
T ss_dssp TTHHHHHHTT--S--SCSEEEEECCCSCSS--HHHHH-HHHHHTTSSSCCSEEEEEEEGGGGGGHHH--------HHHHH
T ss_pred HHHHHHHHHh--h--CCCEEEEcCCCCccc--cHHHH-HHHHHHHHHhcCcceeEEeeccccHHHHH--------HHHHH
Confidence 0011222222 4 789999999998543 12233 22233322111222334456543222211 11223
Q ss_pred hhCC-C-eeeeecccccccc
Q 025795 163 QLEL-P-HVNILSKMDLVTN 180 (248)
Q Consensus 163 ~~~~-p-~~~vlsk~dll~~ 180 (248)
+-.. | ..-|+||.|...+
T Consensus 234 ~~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 234 KEAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp HTTSCSCEEEEEECSSSCST
T ss_pred hhcccCCeEEEEeCCCCccc
Confidence 3345 5 6668899998654
No 189
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=2e-07 Score=82.67 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i 35 (248)
-+++|+||||||||||+++|.|..++..|+|.+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 368999999999999999999999999999987
No 190
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.23 E-value=1.3e-05 Score=62.12 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|+.|+|||||++.+.+-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 67899999999999999999864
No 191
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.21 E-value=1.8e-06 Score=67.35 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 192
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.20 E-value=1.3e-05 Score=68.88 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.++++|++|||||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999885
No 193
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.20 E-value=1e-05 Score=63.82 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=3.9e-06 Score=77.65 Aligned_cols=98 Identities=14% Similarity=0.191 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC--CceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~--~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
.+.|.||+|+|||||++++++.+... +..+.+.+ ..+. ..++.+.+.-
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~---------------~~~~--~~~~~~~~~~------------- 181 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT---------------SEKF--LNDLVDSMKE------------- 181 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE---------------HHHH--HHHHHHHHHT-------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee---------------HHHH--HHHHHHHHHc-------------
Confidence 46899999999999999999876322 22222211 1111 1122211110
Q ss_pred hhhHHHHHHHHHccCCCCCEEEEeCCCc-cCH-HhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 82 EDNLDDWLAEELDNYLDDDYLVFDCPGQ-IEL-FTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 82 ~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~-~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
... ..+...+.. ++++|++||+.. .+. .....++ .++..+.+.|..++++
T Consensus 182 -~~~-~~~~~~~~~--~~~vL~IDEi~~l~~~~~~q~~l~-~~l~~l~~~~~~iIit 233 (440)
T 2z4s_A 182 -GKL-NEFREKYRK--KVDILLIDDVQFLIGKTGVQTELF-HTFNELHDSGKQIVIC 233 (440)
T ss_dssp -TCH-HHHHHHHTT--TCSEEEEECGGGGSSCHHHHHHHH-HHHHHHHTTTCEEEEE
T ss_pred -ccH-HHHHHHhcC--CCCEEEEeCcccccCChHHHHHHH-HHHHHHHHCCCeEEEE
Confidence 011 222333444 789999999998 443 5666666 7788776667776654
No 195
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.19 E-value=2.8e-06 Score=78.83 Aligned_cols=132 Identities=12% Similarity=0.018 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEEEeccCCCCCC---------CCCCc------ccChhhhhhHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMHIVNLDPAAEN---------FDYPV------AMDIRELISLEDVMEEL 66 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~i~~~d~~~~~---------~~y~~------~~~i~e~i~~~~~m~~~ 66 (248)
-.++|.|+||+|||||+..+++...+..| .|.+.+.....+. ..+.. .++..+.-.+.+.++.+
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l 283 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSL 283 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999998766444 7877765532210 11100 12222222334444444
Q ss_pred CCCCCCchhhhHHhhhhhHHHHHHHHHccCCCCCEEEEeCCCc-cCHH-----hH---HHHHHHHHHHHHh-CCCeEEEE
Q 025795 67 GLGPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQ-IELF-----TH---VPVLRNFVDHLKS-RNFNVCAV 136 (248)
Q Consensus 67 ~L~~~~~~~~~~~~l~~~~~~~La~~l~~~~~p~~lilDEPt~-LD~~-----~~---~~~~~~ll~~l~~-~~~~ii~v 136 (248)
+..+..- ......-...+ ...++.+..-.+|+++++|+|+. .... .. ..+. +.++.+.+ .+.+++++
T Consensus 284 ~~~~l~i-~d~~~~s~~~i-~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~-~~Lk~lAke~~i~vi~~ 360 (454)
T 2r6a_A 284 SNAGIYI-DDTPSIRVSDI-RAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS-RSLKALARELEVPVIAL 360 (454)
T ss_dssp HSSCEEE-ECCTTCCHHHH-HHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH-HHHHHHHHHHTCCEEEE
T ss_pred hcCCEEE-ECCCCCCHHHH-HHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH-HHHHHHHHHhCCeEEEE
Confidence 3322100 00000011223 34455555222799999999998 4221 12 2333 34455543 48888776
Q ss_pred E
Q 025795 137 Y 137 (248)
Q Consensus 137 ~ 137 (248)
+
T Consensus 361 s 361 (454)
T 2r6a_A 361 S 361 (454)
T ss_dssp E
T ss_pred e
Confidence 4
No 196
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.18 E-value=1.8e-05 Score=64.03 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 197
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.18 E-value=4.5e-06 Score=83.06 Aligned_cols=74 Identities=24% Similarity=0.195 Sum_probs=58.3
Q ss_pred HHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 62 VMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 62 ~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
.+..+|++.. .++. ...++++ +++.||++|.. +| .++||||||+ ||+.....++ +++++|++.|.++++
T Consensus 362 ~L~~vGL~~l~l~r~--~~tLSGGe~QRV~LA~aL~~--~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRS--TPTLSPGELQRLRLATQLYS--NLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNSLFV 436 (842)
T ss_dssp HHHHTTCTTSBTTCB--GGGSCHHHHHHHHHHHHTTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HHHhCCCCcCCccCC--cCcCCHHHHHHHHHHHHHhh--CCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 5778898754 2222 3456665 45899999998 88 5999999999 9999999999 999999888999887
Q ss_pred E-Eecc
Q 025795 136 V-YLLD 140 (248)
Q Consensus 136 v-~l~d 140 (248)
| |.++
T Consensus 437 VeHdl~ 442 (842)
T 2vf7_A 437 VEHDLD 442 (842)
T ss_dssp ECCCHH
T ss_pred EcCCHH
Confidence 7 5443
No 198
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.18 E-value=4.5e-06 Score=83.81 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=57.6
Q ss_pred HHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 62 VMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 62 ~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
.+..+||+.. ..+. ...++++ +++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.++|+
T Consensus 487 ~L~~vGL~~l~ldR~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRS--AGTLSGGEAQRIRLATQIGS--RLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNTLIV 561 (972)
T ss_dssp HHHHHTCTTSBSSSB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCEEEE
T ss_pred HhhhCCCCccccCCc--cccCCHHHHHHHHHHHHHhh--CCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 4778898753 2222 3456665 45899999998 7 59999999999 9999999999 999999878999887
Q ss_pred E-Eec
Q 025795 136 V-YLL 139 (248)
Q Consensus 136 v-~l~ 139 (248)
| |..
T Consensus 562 VeHdl 566 (972)
T 2r6f_A 562 VEHDE 566 (972)
T ss_dssp ECCCH
T ss_pred EecCH
Confidence 7 443
No 199
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.17 E-value=5.1e-06 Score=71.45 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.++|-
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999874
No 200
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.16 E-value=8.8e-07 Score=71.33 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G 31 (248)
+.+|+|||||||||++++|.+.+.+..|
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6789999999999999999998876554
No 201
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.15 E-value=1.4e-05 Score=63.02 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999975
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.15 E-value=1.1e-06 Score=70.26 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
.+++|+|||||||||+++.|++.+ |.+.+++-+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcc
Confidence 679999999999999999999875 677776543
No 203
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=1.2e-06 Score=72.75 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC-CCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET-VRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~-~~G~i~i~~~d 39 (248)
.+++|+|||||||||+++.|++.+++ ..+.+......
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~ 46 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL 46 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence 57899999999999999999999876 44444433333
No 204
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.13 E-value=4.7e-06 Score=83.90 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=56.8
Q ss_pred HHHHhCCCCC-CchhhhHHhhhhh--HHHHHHHHHccCCC--CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEE
Q 025795 62 VMEELGLGPN-GGLIYCMEHLEDN--LDDWLAEELDNYLD--DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCA 135 (248)
Q Consensus 62 ~m~~~~L~~~-~~~~~~~~~l~~~--~~~~La~~l~~~~~--p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~ 135 (248)
.+..+||+.. ..+. ...++++ +++.||++|.. + |+++||||||+ ||+.....++ +++++|++.|.++|+
T Consensus 504 ~L~~vGL~~l~l~r~--~~tLSGGEkQRV~LA~aL~~--~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~TVIv 578 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRA--AATLSGGEAQRIRLATQIGS--GLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNTLIV 578 (993)
T ss_dssp HHHHHTGGGSCTTCB--GGGCCHHHHHHHHHHHHHTT--CCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEE
T ss_pred HHhhCCCCccccCCC--cccCCHHHHHHHHHHHHHhh--CCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCEEEE
Confidence 4677888642 2222 3456665 45899999998 7 58999999999 9999999999 999999888999887
Q ss_pred E-Eec
Q 025795 136 V-YLL 139 (248)
Q Consensus 136 v-~l~ 139 (248)
| |..
T Consensus 579 VeHdl 583 (993)
T 2ygr_A 579 VEHDE 583 (993)
T ss_dssp ECCCH
T ss_pred ECCCH
Confidence 7 443
No 205
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.13 E-value=9.9e-06 Score=71.24 Aligned_cols=98 Identities=11% Similarity=0.158 Sum_probs=57.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 83 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~~ 83 (248)
.+.|.||+|+||||+++.+++.+...+..+...+. .+. ..++...+. ..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~---------------~~~--~~~~~~~~~--------------~~ 87 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA---------------DDF--AQAMVEHLK--------------KG 87 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH---------------HHH--HHHHHHHHH--------------HT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH---------------HHH--HHHHHHHHH--------------cC
Confidence 46899999999999999999877554444433321 111 111111110 00
Q ss_pred hHHHHHHHHHccCCCCCEEEEeCCCccCH--HhHHHHHHHHHHHHHhCCCeEEEEE
Q 025795 84 NLDDWLAEELDNYLDDDYLVFDCPGQIEL--FTHVPVLRNFVDHLKSRNFNVCAVY 137 (248)
Q Consensus 84 ~~~~~La~~l~~~~~p~~lilDEPt~LD~--~~~~~~~~~ll~~l~~~~~~ii~v~ 137 (248)
.. ..+...+ . ++++|++||+..+.. .....+. .++..+.+.+..++++.
T Consensus 88 ~~-~~~~~~~-~--~~~vL~iDEi~~l~~~~~~~~~l~-~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 88 TI-NEFRNMY-K--SVDLLLLDDVQFLSGKERTQIEFF-HIFNTLYLLEKQIILAS 138 (324)
T ss_dssp CH-HHHHHHH-H--TCSEEEEECGGGGTTCHHHHHHHH-HHHHHHHHTTCEEEEEE
T ss_pred cH-HHHHHHh-c--CCCEEEEcCcccccCChHHHHHHH-HHHHHHHHCCCeEEEEe
Confidence 11 1111122 3 689999999988544 5666666 77777766666665543
No 206
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.13 E-value=9.4e-05 Score=59.01 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+-++|+|++|+|||||++.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5689999999999999999998654
No 207
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.13 E-value=4.9e-06 Score=66.74 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 67899999999999999999873
No 208
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.11 E-value=2.8e-05 Score=61.93 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 45789999999999999999874
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.10 E-value=3.8e-07 Score=75.92 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC---CCCCceEEE
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC---ETVRRTMHI 35 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l---~~~~G~i~i 35 (248)
+..++|+||+||||||+++.|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 3689999999999999999999865 455555544
No 210
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.10 E-value=3.8e-06 Score=68.28 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHhhhhhHH--HHHHHHHcc--CCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 78 MEHLEDNLD--DWLAEELDN--YLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 78 ~~~l~~~~~--~~La~~l~~--~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...+++|.+ ++||++++. +.+|+++|+|||++ ||+.+...+. ++++++.+. .+++++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~~-~~~ivi 123 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSKE-SQFIVI 123 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTTT-SEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhccC-CEEEEE
Confidence 355666654 788888864 11579999999999 9999999999 888888543 445444
No 211
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.09 E-value=6.2e-06 Score=68.29 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~ 36 (248)
-.+.|.||+|+||||+++.++......+..+.+.
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3578999999999999999998765444444443
No 212
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.09 E-value=3.6e-05 Score=66.29 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.|.+-
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999998763
No 213
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.07 E-value=1.6e-06 Score=70.71 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.++|+|+||||||||++.++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 678999999999999999999975
No 214
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.07 E-value=2.2e-05 Score=62.85 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 678999999999999999999863
No 215
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.07 E-value=4.6e-05 Score=63.39 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999863
No 216
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.07 E-value=6.3e-05 Score=61.43 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=39.9
Q ss_pred hCCCeeeeecccccccchhhhhhhcccCHHHHHHHhhcccchhHHHHHHHHHHHhhhcCCeeeEEeeccccH--HHHHHH
Q 025795 164 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES--RRLLSQ 241 (248)
Q Consensus 164 ~~~p~~~vlsk~dll~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~f~~l~~~~~~--~~~~~~ 241 (248)
-+.|.+-|.||+|+.......+.. .+.....- . .....++...++...|.+++..+.+ ..++..
T Consensus 133 ~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 198 (204)
T 4gzl_A 133 PNTPIILVGTKLDLRDDKDTIEKL---------KEKKLTPI-T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198 (204)
T ss_dssp SSCCEEEEEECHHHHTCHHHHHHH---------HHTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHH
T ss_pred CCCCEEEEEechhhccchhhhhhh---------hccccccc-c----HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHH
Confidence 378999999999998754211111 11100000 0 1223345556777889999999987 777766
Q ss_pred Hhh
Q 025795 242 IMK 244 (248)
Q Consensus 242 id~ 244 (248)
|-+
T Consensus 199 l~~ 201 (204)
T 4gzl_A 199 AIR 201 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 217
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.06 E-value=2.5e-06 Score=74.05 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
+++|+||||||||||+++++|...+ +.+.+.|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 5899999999999999999998876 6787776543
No 218
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.04 E-value=3.5e-05 Score=61.19 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999854
No 219
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.03 E-value=6.2e-05 Score=68.61 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
+.++++|+.|+|||||++.|.|....
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~ 34 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTS 34 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccc
Confidence 67899999999999999999996543
No 220
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.03 E-value=5.9e-05 Score=70.56 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.++|||||++.|.|.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~ 42 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEI 42 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHCC
Confidence 57899999999999999999864
No 221
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.01 E-value=8.1e-06 Score=70.00 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.|+|||||++.+.|-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999973
No 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.00 E-value=1.3e-05 Score=65.34 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i 35 (248)
-.+.|.||+|+||||+++.++......++.+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 468899999999999999999877655555443
No 223
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.00 E-value=4.1e-06 Score=76.57 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh------------CCCCCCceEEEec
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR------------HCETVRRTMHIVN 37 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g------------~l~~~~G~i~i~~ 37 (248)
...++|+|+||+|||||+++|+| .+.|..|.+.+.+
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 46789999999999999999999 5668889888875
No 224
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.99 E-value=5.4e-05 Score=71.28 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
.+++|+|++||||||++..|+..+...+.++.++..|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 57899999999999999999987765555788887776
No 225
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.98 E-value=5.6e-05 Score=64.28 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.|.|-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 56899999999999999999985
No 226
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=6.2e-05 Score=58.56 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++++|+.|+|||||++.+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999987
No 227
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.96 E-value=3.2e-05 Score=74.20 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCC-ceEEEecc
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVR-RTMHIVNL 38 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~-G~i~i~~~ 38 (248)
.++|+||||+||||++++|++.+++.. |.+.+.+.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 578999999999999999999998887 56665543
No 228
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.96 E-value=5.1e-06 Score=67.48 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 229
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.96 E-value=0.00013 Score=63.49 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+|+.|||||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999964
No 230
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.94 E-value=7.3e-06 Score=67.38 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+.+++|+|++||||||+++.|++.++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999999999864
No 231
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.94 E-value=0.00017 Score=64.42 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-++|+|.+|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 232
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.94 E-value=3.1e-05 Score=73.09 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHHh--CCCCCCceEEEeccCCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYR--HCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g--~l~~~~G~i~i~~~d~~~ 42 (248)
++|.|++||||||+++.|.. +.+.+.+++.+...|+..
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 67999999999999999876 556677889888888864
No 233
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.94 E-value=4.3e-06 Score=68.46 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+.++|+|+|||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999999
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.94 E-value=4e-06 Score=69.61 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
-.++|+||+|||||||++.|.+..+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999865
No 235
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.93 E-value=2.9e-06 Score=80.81 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc-eEE-Eec
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR-TMH-IVN 37 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G-~i~-i~~ 37 (248)
.+++|+|+|||||||++++|+|.+.+.+| ++. +++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 67899999999999999999999999886 675 444
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.92 E-value=4.2e-06 Score=68.07 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
|..+++|+|++|||||||++.|.+.+++.+.++.....++
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 4567899999999999999999998776655665555444
No 237
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=4.2e-05 Score=71.58 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-.+.|.||+|+||||+++++++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999999999854
No 238
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.92 E-value=0.00025 Score=61.03 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.-++|+|.+|+|||||++.+.|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
No 239
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.91 E-value=0.00014 Score=63.84 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.++|+|++|+|||||++.+.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 240
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.91 E-value=6.6e-06 Score=65.47 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
|+.+++|.|++||||||+++.|+.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 788999999999999999999997
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.89 E-value=4.4e-06 Score=67.57 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
+.+++|+|++||||||+++.+++.+.+.++.+.+.+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 367899999999999999999999887777775543
No 242
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.88 E-value=9.9e-06 Score=72.69 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCEEEEeCCCccCHH-hHHHHHHHHHHHHHhCCCeEEEEEecccccc--cChHHHHHHHHHHHHHHH--hhCCCeeeeec
Q 025795 99 DDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 173 (248)
Q Consensus 99 p~~lilDEPt~LD~~-~~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~--~d~~~~~s~~l~~~~~~~--~~~~p~~~vls 173 (248)
.++.|.|.|+..+.. ..+.+....++.+.+. -+++|++|+... .++..-+..+.-.+...- ..+.|.+-|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~---d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT---RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC---CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhc---cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 568999999974421 1112232445555432 235566776553 344433332222222211 24789999999
Q ss_pred ccccccc
Q 025795 174 KMDLVTN 180 (248)
Q Consensus 174 k~dll~~ 180 (248)
|+|+...
T Consensus 283 K~Dl~~~ 289 (342)
T 1lnz_A 283 KMDMPEA 289 (342)
T ss_dssp CTTSTTH
T ss_pred CccCCCC
Confidence 9999764
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.87 E-value=7.3e-06 Score=69.54 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~ 38 (248)
.++|+|||||||||+++++++... .|.+.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 589999999999999999999875 566766654
No 244
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=2.7e-05 Score=67.58 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
..+.+.||+|+||||+++.+++.+...++.+...+..... ... ... +.+|..+... ..-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~------~~~------~~~---~l~g~~~~~~-----~~~~ 107 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM------EKH------AVS---RLIGAPPGYV-----GYEE 107 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC------STT------HHH---HHHCCCTTST-----TTTT
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc------ccc------cHH---HhcCCCCccc-----cccc
Confidence 4689999999999999999999988877776665542211 100 111 1123221100 0000
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHH
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH 125 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~ 125 (248)
. ..+..++... ...++++||...+++.....+. +++..
T Consensus 108 ~---~~~~~~~~~~-~~~vl~lDEi~~l~~~~~~~Ll-~~le~ 145 (311)
T 4fcw_A 108 G---GQLTEAVRRR-PYSVILFDAIEKAHPDVFNILL-QMLDD 145 (311)
T ss_dssp C---CHHHHHHHHC-SSEEEEEETGGGSCHHHHHHHH-HHHHH
T ss_pred c---chHHHHHHhC-CCeEEEEeChhhcCHHHHHHHH-HHHhc
Confidence 0 1223333331 4479999999889887776666 55554
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.85 E-value=6.2e-06 Score=67.55 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
No 246
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.84 E-value=9.3e-05 Score=64.98 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++++|++|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 568999999999999999988753
No 247
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.84 E-value=0.00051 Score=63.38 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
.-++++|+.++|||||++.|.+.
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999654
No 248
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.83 E-value=6.9e-06 Score=65.97 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEec
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~ 37 (248)
..+++|+|++||||||+++.|++.+++ .| .+.+++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 357899999999999999999998766 45 444444
No 249
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.83 E-value=3.7e-05 Score=69.34 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~ 38 (248)
-++.|.||+|||||||+..++......++.+.+...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468899999999999999888765544556666543
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.83 E-value=1e-05 Score=69.82 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~ 38 (248)
.++|+||||||||||++++++... .|.+.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 589999999999999999999875 677766654
No 251
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.79 E-value=4e-05 Score=65.84 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|++|+|||||++.+.|-
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999974
No 252
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=0.00014 Score=58.30 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 6789999999999999999987
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.78 E-value=0.00016 Score=64.57 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
-++.|.||+|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 254
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.77 E-value=6e-06 Score=68.32 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCc--eEEEec
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRR--TMHIVN 37 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G--~i~i~~ 37 (248)
+.+++|+|++||||||+++.|++.+.+..| .+.+++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 467899999999999999999999876666 555543
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=2.1e-06 Score=76.35 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC----CCCCceEEEec
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC----ETVRRTMHIVN 37 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l----~~~~G~i~i~~ 37 (248)
.+++.||||+|||||+++++|.+ .+.+|.+...+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 57899999999999999999987 45555554433
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.76 E-value=9.7e-05 Score=66.82 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-++.|.||+|||||||+..++......++.+.+...+.... .. .++.+|+....-.+.... -.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-----------~~-----~a~~~g~d~~~l~i~~~~-~~ 137 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-----------PV-----YARALGVNTDELLVSQPD-NG 137 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-----------HH-----HHHHTTCCGGGCEEECCS-SH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-----------HH-----HHHHcCCCHHHceeecCC-cH
Confidence 35788999999999999888765444456777766543211 00 234445432210010000 11
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCH----H---------hHHHHHHHHHHHHH----hCCCeEEEEE
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIEL----F---------THVPVLRNFVDHLK----SRNFNVCAVY 137 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~----~---------~~~~~~~~ll~~l~----~~~~~ii~v~ 137 (248)
+.+ .++++.+.....++++++|..+.+-+ . .+...+.+++++|. +.+.++++++
T Consensus 138 e~~-l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 138 EQA-LEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp HHH-HHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 222 33444444322789999999998432 0 12122236666663 4577776663
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.76 E-value=0.00027 Score=65.29 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPA 41 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~ 41 (248)
+.+++++|++|+||||++..|+..+... +.+|.+...|+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3578889999999999999999888776 678999888874
No 258
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.73 E-value=6.1e-06 Score=73.16 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETV 29 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~ 29 (248)
.++|.||+|+||||+++.+++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999877553
No 259
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.72 E-value=0.0016 Score=59.08 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.|+|||||++.|.+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999874
No 260
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.72 E-value=0.00015 Score=66.65 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|.+|+|||||++.+.|-
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHhCC
Confidence 56899999999999999999975
No 261
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.71 E-value=4.6e-05 Score=64.57 Aligned_cols=114 Identities=13% Similarity=0.037 Sum_probs=61.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHH--
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME-- 79 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~-- 79 (248)
+..+.+.|+.|+||||++-.++..+...+-+|.+...|+.... ...... -++...........
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~-------------~~~al~--~gl~~~~~~~~~~~~~ 70 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA-------------ETEALL--NGLPQQPLLRTEYRGM 70 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH-------------HHHHHH--TTSCBCCCEEEEETTE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh-------------hHHHHh--cCccccCcceeecCCc
Confidence 4678899999999999977777655544457877777763210 011111 12222110000000
Q ss_pred hhhhhHHHHHHHHHccCCCCCEEEEeCCCc--cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 80 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQ--IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 80 ~l~~~~~~~La~~l~~~~~p~~lilDEPt~--LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
...+ ..+..++.. .|+++|+|||+. .+...+...+ +.+..+...|..++.+
T Consensus 71 ~~~e---~~l~~~L~~--~pdlvIVDElG~~~~~~~r~~~~~-qDV~~~l~sgidVitT 123 (228)
T 2r8r_A 71 TLEE---MDLDALLKA--APSLVLVDELAHTNAPGSRHTKRW-QDIQELLAAGIDVYTT 123 (228)
T ss_dssp EEEE---CCHHHHHHH--CCSEEEESCTTCBCCTTCSSSBHH-HHHHHHHHTTCEEEEE
T ss_pred cccc---ccHHHHHhc--CCCEEEEeCCCCCCcccchhHHHH-HHHHHHHcCCCCEEEE
Confidence 0010 112222335 899999999984 4433333334 3344454668777655
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.71 E-value=1.7e-05 Score=63.23 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
|+.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 263
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.70 E-value=5.2e-05 Score=67.22 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
.+.|.||+|+||||+++.+...+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987643
No 264
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.70 E-value=1.5e-05 Score=73.21 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=41.8
Q ss_pred hhhhHH--HHHHHHHccC--CCCCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 81 LEDNLD--DWLAEELDNY--LDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 81 l~~~~~--~~La~~l~~~--~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++++++ ++||++++.. .+|+++|+|||++ ||+..+..+. ++++++.+.+.+++++
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~~ii~ 393 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQFIVI 393 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBEEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCEEEEE
Confidence 455543 7788888720 1799999999999 9999999988 8888875556666555
No 265
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.69 E-value=0.00012 Score=64.73 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-++.|.||+|||||||+..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 468899999999999999998753
No 266
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.69 E-value=2.6e-05 Score=65.78 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~ 36 (248)
..+++|.||+||||||+++.|++.+.+ ++.+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 467899999999999999999999988 7776544
No 267
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.67 E-value=2.3e-05 Score=61.84 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g 24 (248)
+.+|+|||||||||++.+|.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999974
No 268
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.67 E-value=0.00017 Score=56.02 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceE
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i 33 (248)
-+.|.||+|+|||++.+.+.......++.+
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~ 55 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEF 55 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCE
Confidence 367999999999999999998765544443
No 269
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.66 E-value=1.9e-05 Score=64.02 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~ 41 (248)
+.+++|+|++||||||++..|.+.++..+-+|.+...++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 3578999999999999999999988766557777766553
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.66 E-value=2.2e-05 Score=61.89 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+++|+||+||||||+++.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998764
No 271
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.65 E-value=3.4e-05 Score=72.61 Aligned_cols=51 Identities=20% Similarity=0.074 Sum_probs=44.3
Q ss_pred hhhH--HHHHHHHHccCCCC--CEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 82 EDNL--DDWLAEELDNYLDD--DYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 82 ~~~~--~~~La~~l~~~~~p--~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
+++. ++.||++++. +| +++|||||++ ||+.+...+. ++++++.+ |.++++|
T Consensus 399 SgG~~qrv~la~~l~~--~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~vi~i 454 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVL--GADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQVLVV 454 (517)
T ss_dssp CSSHHHHHHHHHHHHH--CCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSEEEEE
T ss_pred CHHHHHHHHHHHHHHh--CCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCEEEEE
Confidence 5554 3899999999 99 9999999999 9999999999 99999876 7787766
No 272
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.65 E-value=6e-05 Score=68.23 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLY 23 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~ 23 (248)
.++++|+.++|||||++.|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999887
No 273
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.65 E-value=0.00025 Score=66.14 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|+.|+|||||++.|.+.
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999865
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.64 E-value=2.4e-05 Score=61.40 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 025795 3 YAQLVIGPAGSGKSTYCSSL 22 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l 22 (248)
.+++|.||+||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 275
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.63 E-value=0.00013 Score=67.42 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
...++|+|++|+|||||++.|.|
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35789999999999999999987
No 276
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.61 E-value=0.00011 Score=67.74 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
...++|+|++|+|||||++.+.|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999986
No 277
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.61 E-value=0.00054 Score=58.61 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-.+.|.||+|+||||+++.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 357899999999999999999865
No 278
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.61 E-value=4.2e-05 Score=69.09 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=36.5
Q ss_pred hhhhhHH--HHHHHHHc---------cCCCCCEEEEeCCCc-cCHHhHHHHHHHHHHHH
Q 025795 80 HLEDNLD--DWLAEELD---------NYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHL 126 (248)
Q Consensus 80 ~l~~~~~--~~La~~l~---------~~~~p~~lilDEPt~-LD~~~~~~~~~~ll~~l 126 (248)
.++++++ +.||++++ . +|+++|+|||++ ||+..+..++ +++.++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~--~p~iLLLDEp~s~LD~~~~~~l~-~~l~~~ 320 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFG--EDPVLLLDDFTAELDPHRRQYLL-DLAASV 320 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHS--SCCEEEECCGGGCCCHHHHHHHH-HHHHHS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccC--CCCEEEEeCccccCCHHHHHHHH-HHHHhc
Confidence 4555543 78899998 7 999999999999 9999998888 777665
No 279
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.61 E-value=3.3e-05 Score=61.94 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+..++|+|++||||||+++.|+..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998643
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.60 E-value=2.4e-05 Score=62.46 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+||+||||||+.+.|+..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368899999999999999998754
No 281
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.60 E-value=0.00029 Score=68.76 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+.++|+|+.|+|||||++.|.|.-
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999999853
No 282
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.60 E-value=3.6e-05 Score=61.67 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
|+.+++|.|++||||||+++.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998754
No 283
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.60 E-value=3.1e-05 Score=69.47 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.++++|++|+|||||++.++|..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999854
No 284
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.59 E-value=0.00049 Score=63.63 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|.+|+|||||++.+.|.
T Consensus 196 ~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 196 IQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceeEEecCCCCCHHHHHHHHhCC
Confidence 56899999999999999999964
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=3.3e-05 Score=63.19 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+++|+||+||||||+.+.|++.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999865
No 286
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.58 E-value=0.00035 Score=64.34 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.|+|||||++.|.+.
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999999853
No 287
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.57 E-value=3.1e-05 Score=61.26 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
|+.+++|.|++||||||+.+.|+..+
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 66678999999999999999998754
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.57 E-value=2.6e-05 Score=64.09 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
.+++|+||+||||||+++.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5688999999999999999998764
No 289
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.55 E-value=4.7e-05 Score=62.94 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+++++|.|++||||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999998
No 290
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.55 E-value=6.9e-05 Score=70.07 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.|.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 291
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.55 E-value=0.0007 Score=65.72 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC--CCceE
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET--VRRTM 33 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~--~~G~i 33 (248)
..++|+|++|+|||||++.|.+...+ ..|+|
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 46899999999999999999976654 45666
No 292
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.54 E-value=1.1e-05 Score=66.14 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i 35 (248)
+++|.|++||||||+++.|...+...+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~ 33 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT 33 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 68899999999999999999988765445543
No 293
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.54 E-value=0.00023 Score=61.36 Aligned_cols=24 Identities=29% Similarity=0.671 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..+.|.||+|+||||+++.+++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468899999999999999999865
No 294
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.8e-05 Score=61.04 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|.|++||||||+++.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998653
No 295
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.53 E-value=4.4e-05 Score=62.18 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
|+.+++|.|++||||||+++.|++.+
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 65689999999999999999999854
No 296
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.53 E-value=0.00014 Score=56.36 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCccCHHhHHHHHHHHHHHHHhCCCeEEEEEeccc
Q 025795 98 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 141 (248)
Q Consensus 98 ~p~~lilDEPt~LD~~~~~~~~~~ll~~l~~~~~~ii~v~l~d~ 141 (248)
+...+++||...+....+..+. +++.+-...+.++|++...+.
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll-~~l~~~~~~~~~iI~~tn~~~ 117 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGIT-FIIGKAERCRVRVIASCSYAA 117 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHH-HHHHHHTTTTCEEEEEEEECT
T ss_pred CCCeEEEeChHHCCHHHHHHHH-HHHHhCCCCCEEEEEecCCCH
Confidence 5679999999999888877776 666654334566766644443
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.53 E-value=5.9e-05 Score=61.15 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.+++|+|++||||||+++.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 478999999999999999999985
No 298
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.53 E-value=3.9e-05 Score=65.37 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
+..++++|++||||||+.+.|++.+. .+.+.+++
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 46889999999999999999998764 24455544
No 299
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0006 Score=65.59 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.|.+-
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHh
Confidence 56899999999999999999865
No 300
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.52 E-value=5.4e-05 Score=60.88 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|+|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999998754
No 301
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.52 E-value=0.00057 Score=62.26 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.|+|||||++.|.|.
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999975
No 302
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.51 E-value=7.2e-05 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999999863
No 303
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.51 E-value=0.00013 Score=64.24 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC-CCCceEE
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE-TVRRTMH 34 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~-~~~G~i~ 34 (248)
..+.|.||+|+|||+|+++++..+. ..+..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~ 185 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTT 185 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEE
Confidence 4678999999999999999998655 3333443
No 304
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.50 E-value=3.7e-05 Score=61.70 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
|+.+++|+|++||||||+.+.|+..+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 66679999999999999999998743
No 305
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.49 E-value=8.4e-05 Score=68.49 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+-++|+|+||+|||||++.+.|...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc
Confidence 5689999999999999999999753
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.48 E-value=4.5e-05 Score=61.67 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|.|++||||||+++.|+..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.48 E-value=6e-05 Score=60.35 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
..++|.|++||||||+++.|+..+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999987653
No 308
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.46 E-value=8e-05 Score=60.63 Aligned_cols=31 Identities=32% Similarity=0.318 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceE
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTM 33 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i 33 (248)
+..++|.|++||||||+++.|+..+... |.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~ 34 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK-RDV 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT-SCE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCE
Confidence 3689999999999999999999876653 344
No 309
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.45 E-value=6.9e-05 Score=64.05 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+++|+||+||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 468999999999999999999764
No 310
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.44 E-value=0.0002 Score=65.71 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV 29 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~ 29 (248)
-+++|+|||||||||++++|++++.+.
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 468999999999999999999977653
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=6.9e-05 Score=60.08 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+..++++||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998754
No 312
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.44 E-value=6.7e-05 Score=63.78 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+++++|.||+||||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999654
No 313
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.44 E-value=6.3e-05 Score=60.26 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++|+|++|+|||||++.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999999864
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.44 E-value=7.2e-05 Score=59.90 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999998654
No 315
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=7.3e-05 Score=59.54 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++|+|++|+|||||++.++|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999974
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.43 E-value=7e-05 Score=60.61 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
.++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 578999999999999999998654
No 317
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.42 E-value=0.0016 Score=64.13 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCccC------HHh-HHHHHHHHHHHHHhCCCeEEEEEecccccccChHHHHHHHHHHHHHHHhhCCCeee
Q 025795 98 DDDYLVFDCPGQIE------LFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 170 (248)
Q Consensus 98 ~p~~lilDEPt~LD------~~~-~~~~~~~ll~~l~~~~~~ii~v~l~d~~~~~d~~~~~s~~l~~~~~~~~~~~p~~~ 170 (248)
.+++.++|.||-.. +.. ...+. +++.+.......+ +++++|+..-...... +......-..+.|.+-
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~-~lv~~yi~~~aDl-IL~VVDAs~~~~~~d~----l~ll~~L~~~g~pvIl 222 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIR-DMLMQFVTKENCL-ILAVSPANSDLANSDA----LKIAKEVDPQGQRTIG 222 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHH-HHHHHHHTSTTEE-EEEEEETTSCSSSCHH----HHHHHHHCTTCSSEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHH-HHHHHHHhcCCcE-EEEEEcCCCCcchhHH----HHHHHHHHhcCCCEEE
Confidence 56899999999532 211 22333 5566654433334 4556776542212211 0111222245789999
Q ss_pred eecccccccc
Q 025795 171 ILSKMDLVTN 180 (248)
Q Consensus 171 vlsk~dll~~ 180 (248)
|+||+|++.+
T Consensus 223 VlNKiDlv~~ 232 (772)
T 3zvr_A 223 VITKLDLMDE 232 (772)
T ss_dssp EEECTTSSCT
T ss_pred EEeCcccCCc
Confidence 9999999864
No 318
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.41 E-value=8.9e-05 Score=66.97 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
.++|+|++|||||||++.++|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998753
No 319
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.40 E-value=0.00035 Score=65.01 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.|.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 56899999999999999999873
No 320
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.40 E-value=9.1e-05 Score=64.16 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
|+.++.|+|++||||||+.+.|+.
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 788899999999999999999997
No 321
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.39 E-value=0.00012 Score=65.46 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
.+.|.|++|+|||||+..++......++.|.+....
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578999999999999999987665556677766543
No 322
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.39 E-value=0.001 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+.|.||+|+||||+++.++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999854
No 323
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.39 E-value=8.3e-05 Score=61.46 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.+|+|||||||||++.+|.-.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998743
No 324
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.38 E-value=8e-05 Score=67.67 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i 35 (248)
-+++|+||||||||||++.++|.. +|.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 478999999999999999999953 566654
No 325
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.37 E-value=0.00023 Score=64.06 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHccCCC-CCEEEEeCCCc-cCHHhHHHHHHHHHHHHHhCCCeEEEE
Q 025795 88 WLAEELDNYLD-DDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAV 136 (248)
Q Consensus 88 ~La~~l~~~~~-p~~lilDEPt~-LD~~~~~~~~~~ll~~l~~~~~~ii~v 136 (248)
++|+++.. + |+++|||||++ ||+..+..+. ++++++.+ +.+++++
T Consensus 296 a~a~~l~~--~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~-~~~vi~~ 342 (371)
T 3auy_A 296 AIANALIG--NRVECIILDEPTVYLDENRRAKLA-EIFRKVKS-IPQMIII 342 (371)
T ss_dssp HHHHHHHS--SCCSEEEEESTTTTCCHHHHHHHH-HHHHHCCS-CSEEEEE
T ss_pred HHHHHHhc--CCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhcc-CCeEEEE
Confidence 45677777 8 99999999999 9999999988 77777643 3455544
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.37 E-value=7.5e-05 Score=64.03 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
...++|+|++||||||+++.|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999999865
No 327
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.36 E-value=0.00011 Score=62.46 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+++++|.|++||||||+++.|+..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 47899999999999999999988543
No 328
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=0.00026 Score=70.23 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
-.++|+|||||||||+++++++.+.
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999999864
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.36 E-value=0.0001 Score=60.08 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+++++|+|++||||||+++.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998754
No 330
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.35 E-value=0.0013 Score=63.07 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
..++|+|+.|+|||||++.|.+.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~ 28 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhcc
Confidence 67899999999999999999863
No 331
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.35 E-value=0.00012 Score=58.27 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++|+|++|+|||||++.+.|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999853
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.35 E-value=0.00011 Score=59.54 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+..++|.|+.||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 333
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.35 E-value=0.00089 Score=60.96 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.++|||||++.|.|.
T Consensus 9 ~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 9 VNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp EEEEEESCTTSSHHHHHHHHHSC
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Confidence 57899999999999999999975
No 334
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.35 E-value=0.00014 Score=65.18 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
|+.+++|.||+||||||+.+.|+..+.
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC
Confidence 456899999999999999999998664
No 335
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.33 E-value=0.00018 Score=60.74 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~ 36 (248)
.++.+.||.||||||++-.++..+...+.++.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5788999999999998776665554444566665
No 336
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.32 E-value=0.00011 Score=61.67 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|+|++||||||+++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999743
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.32 E-value=0.00012 Score=58.99 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|+|++||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998754
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.31 E-value=0.00012 Score=59.71 Aligned_cols=26 Identities=31% Similarity=0.212 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+..++|.|++||||||+++.|+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999997653
No 339
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.31 E-value=0.0028 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|..++|||||++.|.+.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999864
No 340
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00013 Score=58.99 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
..++|+|++||||||+++.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999975
No 341
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.00019 Score=63.11 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+.+.||+|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 342
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.30 E-value=0.00011 Score=67.19 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
...++|+|+||+|||||++.|+|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999987
No 343
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.30 E-value=0.00011 Score=63.95 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEe
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIV 36 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~ 36 (248)
+..+.|.||+||||||+++.|...+. .+.+.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is 65 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVID 65 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEe
Confidence 46789999999999999999987543 2444443
No 344
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=6.1e-05 Score=71.49 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
-+++++||||+||||+++++++.+.+..|.+.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 36889999999999999999999987777765544
No 345
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.29 E-value=0.00022 Score=64.32 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g 24 (248)
+++|+|||||||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 689999999999999999997
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.29 E-value=0.00013 Score=58.82 Aligned_cols=25 Identities=36% Similarity=0.235 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
.++|.|+.||||||+++.|...++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 347
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.28 E-value=0.00011 Score=66.38 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
.++|+||+||||||+++.+.+...+.++.+.+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999988878888887754
No 348
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.28 E-value=0.00021 Score=64.60 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
|.+.++|+|++|+|||||++.++|-
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 6788999999999999999999983
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.28 E-value=0.00015 Score=58.98 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|.|++||||||+++.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998654
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.26 E-value=0.00014 Score=59.80 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.++|.||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 351
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.26 E-value=0.00014 Score=60.46 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+++|+||+||||+|.++.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
No 352
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.25 E-value=0.0047 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..+.|.||+|+||||+++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 467899999999999999999875
No 353
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.24 E-value=0.00046 Score=55.68 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.|.||+|+||||+++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998754
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.24 E-value=9.1e-05 Score=59.07 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+++|.|++||||||+.+.|+..+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998754
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.23 E-value=0.00016 Score=57.97 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998653
No 356
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.22 E-value=0.00016 Score=59.47 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.++|+||+||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 357
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.22 E-value=0.00011 Score=70.37 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
.-++|+|+.++|||||++.|.+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999965
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.21 E-value=0.00015 Score=60.10 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+||+||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998764
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.00017 Score=59.15 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l 26 (248)
++|+||+||||||+++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987654
No 360
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=7.3e-05 Score=66.19 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
+++.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 68999999999999999999887766655444443
No 361
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00018 Score=59.84 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+|++||||||+++.|+..+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999754
No 362
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.19 E-value=0.00021 Score=58.77 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
++++|+|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999975
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.19 E-value=0.00017 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+|++||||||+++.|+..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998653
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.18 E-value=0.0002 Score=59.25 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999998764
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.18 E-value=0.00022 Score=60.45 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+..++|.||+||||||+++.|+..+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998654
No 366
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.18 E-value=0.00048 Score=57.29 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795 5 QLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (248)
Q Consensus 5 ~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~ 41 (248)
++|-|..|+||||+.-.++..+...+.+|.+.+.|+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4558999999999999999988877789999999985
No 367
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.18 E-value=0.00015 Score=61.97 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+..++|.|++||||||+.+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999997643
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.17 E-value=0.00021 Score=61.92 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+++++|.|++||||||+++.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999985
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.17 E-value=0.0002 Score=58.45 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+.+++|.|++||||||+++.|+..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999997654
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.15 E-value=0.00029 Score=57.78 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
..++|+|++|||||||++.+.+..... .++.+.+.++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCC
Confidence 578999999999999999999875443 4565555443
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.15 E-value=0.00023 Score=55.98 Aligned_cols=23 Identities=43% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.15 E-value=0.00025 Score=59.57 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-++.|+||+||||+|.++.|+..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999754
No 373
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.14 E-value=0.00028 Score=66.30 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDP 40 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~ 40 (248)
-.++|+||||+|||||++++++... .+.+.+.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 3589999999999999999999875 67788877543
No 374
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.14 E-value=0.0033 Score=55.25 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
-.+.|.|++|+|||||+..++...-..++.+.+..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 36789999999999999988854433334555443
No 375
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.14 E-value=0.00023 Score=60.28 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
-.+.|.||+|+||||+++++++...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999998753
No 376
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.14 E-value=0.0019 Score=56.59 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
-++.|.||+|||||||+..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998885
No 377
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.13 E-value=0.00088 Score=63.13 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|.+|+|||||++.+.+-
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 378
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.0016 Score=57.98 Aligned_cols=117 Identities=12% Similarity=0.155 Sum_probs=59.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC-CCC-CCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH-CET-VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 81 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~-l~~-~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l 81 (248)
++.|.||+|||||||+-.++-. .+. .+|.+.+..-. + .+.+ ..++.+|+....-...... -
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E----~-s~~~-----------~ra~~lGvd~d~llv~~~~-~ 92 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE----F-GITP-----------AYLRSMGVDPERVIHTPVQ-S 92 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS----C-CCCH-----------HHHHHTTCCGGGEEEEECS-B
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc----c-hhhH-----------HHHHHhCCCHHHeEEEcCC-C
Confidence 4679999999999996655433 322 14555554311 0 1111 1356667654321111111 1
Q ss_pred hhhHHHHHHHHH--ccCCCCCEEEEeCCCccCH----H-----------hHHHHHHHHHHH----HHhCCCeEEEEE
Q 025795 82 EDNLDDWLAEEL--DNYLDDDYLVFDCPGQIEL----F-----------THVPVLRNFVDH----LKSRNFNVCAVY 137 (248)
Q Consensus 82 ~~~~~~~La~~l--~~~~~p~~lilDEPt~LD~----~-----------~~~~~~~~ll~~----l~~~~~~ii~v~ 137 (248)
.+.+..+++..+ ....+|+++++|--+++=+ . .+...+.+.+++ +++.+.+++++.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 111113344454 3322799999998877311 0 222222244444 345788888874
No 379
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.08 E-value=0.00028 Score=62.75 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
|+..++|+||+||||||+.+.|+..+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 566899999999999999999998653
No 380
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.07 E-value=0.0048 Score=53.15 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
.+.|.||+|+||||+++.++..+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998887653
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.06 E-value=0.00029 Score=58.70 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 382
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.06 E-value=0.00031 Score=55.42 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 383
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.06 E-value=0.00039 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999973
No 384
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.06 E-value=0.00042 Score=56.22 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++++|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999976
No 385
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.04 E-value=8.2e-05 Score=65.04 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+++++|.||+||||||+++.|...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987543
No 386
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.02 E-value=0.0011 Score=65.43 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
.++|+||+||||||++..+.+....
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~~~~ 135 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLFDEM 135 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999999998888665433
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00034 Score=57.66 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
No 388
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.00 E-value=0.0018 Score=69.53 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCCCCCCCCcccChhhhhhHHHHHHHhCCCCCCchhhhHHhhh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 82 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m~~~~L~~~~~~~~~~~~l~ 82 (248)
-++.|.||+|+|||||+..+.--....++++.+....-. + + ... ++.+|..-..-.+.+.+ -.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~---~------~------~l~-a~~~G~dl~~l~v~~~~-~~ 1490 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA---L------D------PIY-ARKLGVDIDNLLCSQPD-TG 1490 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC---C------C------HHH-HHHTTCCTTTCEEECCS-SH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc---c------C------HHH-HHHcCCCchhceeecCC-hH
Confidence 468899999999999998887654445666666532110 0 0 000 33444321111111111 11
Q ss_pred hhHHHHHHHHHccCCCCCEEEEeCCCccCHHh-------------H----HHHHHHHHHHHHhCCCeEEEEEecc
Q 025795 83 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-------------H----VPVLRNFVDHLKSRNFNVCAVYLLD 140 (248)
Q Consensus 83 ~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~-------------~----~~~~~~ll~~l~~~~~~ii~v~l~d 140 (248)
+.. .++.+.++....|+++++||-..+-+.. . .+.+.+++..+.+.+.++++++..-
T Consensus 1491 E~~-l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~~ 1564 (2050)
T 3cmu_A 1491 EQA-LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 1564 (2050)
T ss_dssp HHH-HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECEE
T ss_pred HHH-HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 122 4444444322289999999987633321 2 2233355555556688887776543
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.00 E-value=0.00037 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998765
No 390
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.98 E-value=0.00042 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 56899999999999999999864
No 391
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.96 E-value=0.00031 Score=63.23 Aligned_cols=29 Identities=34% Similarity=0.502 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G 31 (248)
+-++|+|++|+|||||++.|.|......+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 55799999999999999999886444333
No 392
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.96 E-value=0.00054 Score=56.64 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSL 22 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l 22 (248)
|++++.+.|++||||||++..+
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHH
Confidence 5678999999999999998765
No 393
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0095 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+-++.+.||+|+|||++++++++...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 34688999999999999999998753
No 394
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.95 E-value=0.00045 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 395
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.95 E-value=0.00051 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.94 E-value=0.0005 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999999864
No 397
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.94 E-value=0.00048 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 398
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.94 E-value=0.00038 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 56899999999999999999764
No 399
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.92 E-value=0.00039 Score=57.18 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+++++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998754
No 400
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.92 E-value=0.0065 Score=53.62 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEec
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVN 37 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~ 37 (248)
.+.|.||+|+||||+++.++..+......+.+.+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 6789999999999999999988764434444443
No 401
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.92 E-value=0.00056 Score=53.07 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 402
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.91 E-value=0.01 Score=60.99 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++++|+.|+|||||++.|.+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Confidence 56899999999999999999874
No 403
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.90 E-value=0.00055 Score=53.62 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++|+|++|+|||||++.+.+-
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 404
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.90 E-value=0.00026 Score=65.22 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
++-++|+|+.|+|||||++.+.+
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~ 56 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVG 56 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999887765
No 405
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.89 E-value=0.00055 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 406
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.89 E-value=0.00047 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 66899999999999999999864
No 407
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.89 E-value=0.0005 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 408
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.88 E-value=0.00057 Score=52.82 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 409
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.88 E-value=0.00065 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g 24 (248)
.+-++|+|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36789999999999999999976
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.87 E-value=0.00056 Score=57.18 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..++|+|++||||||+++.|+..+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999765
No 411
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.86 E-value=0.00067 Score=55.79 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLD 39 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d 39 (248)
+.++|+|++|+|||||++.+.+..... .++.+.+.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d 74 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGD 74 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECC
Confidence 678999999999999999998765443 445444444
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.85 E-value=0.0012 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999877653
No 413
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.85 E-value=0.00037 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999999999998863
No 414
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.85 E-value=0.00062 Score=53.20 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 415
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.84 E-value=0.0035 Score=54.78 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCc
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRR 31 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G 31 (248)
.+.|.||+|+|||++++.+.......++
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~ 54 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDR 54 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSS
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCC
Confidence 4679999999999999999987654333
No 416
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.83 E-value=0.00069 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 417
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.83 E-value=0.0016 Score=53.90 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.3
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 1 ~~~~~~iiG-pnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
|..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM 43 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 555666665 568999999999998887666689999998853
No 418
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.81 E-value=0.00076 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 419
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.80 E-value=0.00071 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999974
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.80 E-value=0.00075 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.76 E-value=0.00087 Score=52.57 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 422
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0029 Score=58.41 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
+-++.+.||+|+|||++++++++...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999999999999999998754
No 423
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.75 E-value=0.00072 Score=58.92 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
..+.|.||+|+||||+++++++...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4688999999999999999998753
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.75 E-value=0.00081 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 425
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.74 E-value=0.00072 Score=60.80 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 025795 4 AQLVIGPAGSGKSTYCSSLY 23 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~ 23 (248)
+.+|+|||||||||++.+|.
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999987
No 426
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.73 E-value=0.00085 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 025795 4 AQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g 24 (248)
-++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999976
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.73 E-value=0.00085 Score=53.35 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 428
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.73 E-value=0.00087 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 429
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.72 E-value=0.0013 Score=54.59 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CCCCCceEEEecc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH-CETVRRTMHIVNL 38 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~-l~~~~G~i~i~~~ 38 (248)
-.+.|.|++|+|||||+..++-. ....++.+.+...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 46789999999999998765422 2222345555443
No 430
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.72 E-value=0.00092 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 431
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.71 E-value=0.00093 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
.+.|.||+|+||||+++.++..+.
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999988653
No 432
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.70 E-value=0.001 Score=55.03 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE
Q 025795 1 MGYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (248)
Q Consensus 1 ~~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~ 34 (248)
|...++|=|+-||||||.++.|...+.. +..+.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~ 33 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 33 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEE
Confidence 6667889999999999999999998853 33443
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.70 E-value=0.00093 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 434
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.69 E-value=0.0016 Score=54.70 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=32.9
Q ss_pred CCeEEEEEc-CCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 1 MGYAQLVIG-PAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 1 ~~~~~~iiG-pnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
|..+++|.| ..|+||||+.-.++..+...+.+|.+.+.|+..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 555666654 567999999999999887767799999999844
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.69 E-value=0.0034 Score=50.64 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCeEEEEE-cCCCCcHHHHHHHHHhCCCCCCceEEEeccCCC
Q 025795 1 MGYAQLVI-GPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPA 41 (248)
Q Consensus 1 ~~~~~~ii-GpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~ 41 (248)
|+. ++|. +..|+||||+.-.++..+...+.+|.+.+.||.
T Consensus 1 M~v-i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~ 41 (206)
T 4dzz_A 1 MKV-ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ 41 (206)
T ss_dssp CEE-EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeE-EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 544 4455 778899999999999888776678999888864
No 436
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.69 E-value=0.001 Score=56.28 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++|+|++|+|||||++.+.|.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999974
No 437
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.69 E-value=0.0032 Score=55.99 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
++.|.||+|+|||||+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4689999999999999998754
No 438
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.68 E-value=0.0026 Score=52.82 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=32.5
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCC
Q 025795 3 YAQLVI-GPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAA 42 (248)
Q Consensus 3 ~~~~ii-GpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~ 42 (248)
.+++|. +..|+||||+.-.++..+... +.+|.+.+.|+..
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~ 46 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPF 46 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTT
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCC
Confidence 455555 567899999999999988776 7799999999863
No 439
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.68 E-value=0.0011 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|+||+|||||||...++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999765
No 440
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.67 E-value=0.001 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999863
No 441
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.67 E-value=0.0043 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+.|.||+|+||||+++.++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 442
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.67 E-value=0.0011 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 443
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.0011 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6689999999999999999986
No 444
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.66 E-value=0.0011 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 445
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.65 E-value=0.0012 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 66899999999999999999874
No 446
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.65 E-value=0.001 Score=55.41 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCCCCceEE
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHCETVRRTMH 34 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~ 34 (248)
...++|.|+.||||||.++.|...+...+-.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 367889999999999999999998876554554
No 447
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.63 E-value=0.0011 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 448
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.62 E-value=0.0042 Score=58.13 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
..+.|.||+|+||||+++.++...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh
Confidence 357899999999999999998764
No 449
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.62 E-value=0.0011 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 66899999999999999999974
No 450
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.62 E-value=0.053 Score=49.69 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEec
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVN 37 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~ 37 (248)
-.+.|.|++|+|||||+..++...... +..|.+..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 367899999999999999988765432 33555544
No 451
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.61 E-value=0.0011 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999984
No 452
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.61 E-value=0.0012 Score=53.25 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 56899999999999999999974
No 453
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.60 E-value=0.0012 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
.+.|.||+|+||||+++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999987654
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.60 E-value=0.0013 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 455
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0012 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999874
No 456
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.60 E-value=0.00084 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998653
No 457
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.59 E-value=0.0013 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 66899999999999999999874
No 458
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.59 E-value=0.00092 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999998764
No 459
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.59 E-value=0.0013 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 460
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.59 E-value=0.0012 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999873
No 461
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.59 E-value=0.0013 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0014 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.57 E-value=0.0014 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999874
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.56 E-value=0.0013 Score=59.27 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
..++|+||+||||||+.++|++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3588999999999999999998753
No 465
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.56 E-value=0.0014 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 466
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.56 E-value=0.0013 Score=52.57 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999874
No 467
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.55 E-value=0.0009 Score=60.50 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.++|+|++|+|||||++.+++.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999999985
No 468
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0014 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999998874
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.54 E-value=0.0017 Score=57.52 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|.||+||||||+...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4678999999999999999999765
No 470
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.53 E-value=0.12 Score=47.94 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCC-CceEEEeccCCCCCCCCCCcccChhhhhhHHHHH-HHhCCCCCCchhhhHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVM-EELGLGPNGGLIYCMEH 80 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~-~G~i~i~~~d~~~~~~~y~~~~~i~e~i~~~~~m-~~~~L~~~~~~~~~~~~ 80 (248)
-.+.|.|++|+|||||+..++-..... ++.|.+..... +..+. ...++ ...++............
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~-----------s~~~l--~~r~~~~~~~~~~~~~~~~~~g~ 309 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE-----------SVEET--AEDLIGLHNRVRLRQSDSLKREI 309 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS-----------CHHHH--HHHHHHHHTTSCCTTCHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC-----------CHHHH--HHHHHHHHcCCChhhccccccCC
Confidence 367899999999999998887654333 44565554321 22211 11111 12333322100000001
Q ss_pred hh-hhHHHHHHHHHccCCCCCEEEEeCCCccCHHhHHHHHHHHHHHHH-hCCCeEEEEEecccccc----cChHHHHHHH
Q 025795 81 LE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI----TDVTKFISGC 154 (248)
Q Consensus 81 l~-~~~~~~La~~l~~~~~p~~lilDEPt~LD~~~~~~~~~~ll~~l~-~~~~~ii~v~l~d~~~~----~d~~~~~s~~ 154 (248)
+. ..+ ..+..++.. +.++.+.|+|++.++... . ..++++. +.+..+++|=-+..... .+....++.+
T Consensus 310 l~~~~~-~~~~~~~~~--~~~l~i~~~~~~~~~~~i---~-~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~ 382 (503)
T 1q57_A 310 IENGKF-DQWFDELFG--NDTFHLYDSFAEAETDRL---L-AKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNL 382 (503)
T ss_dssp HHTSHH-HHHHHHHHT--TTCEEEECCC---CHHHH---H-HHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhc--cCCEEEECCCCCCCHHHH---H-HHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHH
Confidence 11 111 222333333 556888888865554433 2 3334443 34677766622222111 1333445555
Q ss_pred HHHHHHHH-hhCCCeeee
Q 025795 155 MASLSAMV-QLELPHVNI 171 (248)
Q Consensus 155 l~~~~~~~-~~~~p~~~v 171 (248)
+..+..+. ..+.|.+-+
T Consensus 383 ~~~Lk~lak~~~i~vi~~ 400 (503)
T 1q57_A 383 MTKLKGFAKSTGVVLVVI 400 (503)
T ss_dssp HHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHCCeEEEE
Confidence 55554443 467777643
No 471
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.53 E-value=0.0023 Score=55.57 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
.+++|.|.-|+||||+.-.|+..+...+.+|.+.+.||..
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4566669999999999999998887667789999999854
No 472
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.53 E-value=0.00089 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
++.+.||+|+||||++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999875
No 473
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.53 E-value=0.0014 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999753
No 474
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.0011 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCET 28 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~ 28 (248)
.+.|.||+|+||||+++.++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999886543
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.53 E-value=0.0012 Score=60.48 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+.+++|+|++||||||+++.++..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578899999999999999998643
No 476
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.52 E-value=0.00043 Score=65.06 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+.+|+|+|||||||++.+|...
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999999665
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.51 E-value=0.0014 Score=53.14 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999973
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.51 E-value=0.0012 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++++|++|+|||||++.+.+-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 66899999999999999999873
No 479
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.51 E-value=0.0014 Score=53.51 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999975
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.49 E-value=0.0014 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
-.||+||+||||||.++.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
No 481
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.49 E-value=0.0016 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|++|+|||||++.+.|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999863
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.0014 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
..++|.|+.||||||+++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999998774
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0012 Score=52.87 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|+.|+|||||++.+.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5589999999999999999976
No 484
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.48 E-value=0.0017 Score=52.08 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 485
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.47 E-value=0.0015 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+-++|+|++|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678999999999999999998753
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.47 E-value=0.0014 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999999864
No 487
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999999864
No 488
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.46 E-value=0.0032 Score=53.05 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=32.2
Q ss_pred CCeEEEE-EcCCCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 1 MGYAQLV-IGPAGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 1 ~~~~~~i-iGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
|..+++| -|..|+||||+.-.|+..+...+.+|.+.+.|+..
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM 43 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 5445555 46778999999999998887666689999988853
No 489
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.45 E-value=0.0028 Score=54.54 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=33.0
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 3 ~~~~iiGp-nGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
.+++|.|+ .|.||||+.-.|+..+...+.+|.+++.|+..
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 46778876 78999999999998877666789999998764
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.45 E-value=0.0027 Score=53.75 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCCCCceEEE
Q 025795 4 AQLVIGPAGSGKSTYCSSLYRHCETVRRTMHI 35 (248)
Q Consensus 4 ~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i 35 (248)
.+.|.||+|+||||+++.+.......++.+..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~ 62 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFIS 62 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEE
Confidence 46799999999999999999887654444433
No 491
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.45 E-value=0.0014 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 492
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.44 E-value=0.001 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCE 27 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~ 27 (248)
..++|.|+.||||||+++.|+..+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6789999999999999999998764
No 493
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.43 E-value=0.0017 Score=52.42 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRH 25 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~ 25 (248)
+-++|+|+.|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999974
No 494
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.42 E-value=0.0017 Score=53.10 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.41 E-value=0.0011 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=10.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYR 24 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g 24 (248)
+-++|+|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999998874
No 496
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.41 E-value=0.0063 Score=64.63 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCCCCceEEEecc
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHCETVRRTMHIVNL 38 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l~~~~G~i~i~~~ 38 (248)
-++.|.||+|+|||||+..++......++.+.+...
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 368899999999999999998876666667766543
No 497
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.41 E-value=0.0019 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
+-++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 568999999999999999999753
No 498
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.41 E-value=0.0024 Score=55.80 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=33.1
Q ss_pred eEEEEEcC-CCCcHHHHHHHHHhCCCCCCceEEEeccCCCC
Q 025795 3 YAQLVIGP-AGSGKSTYCSSLYRHCETVRRTMHIVNLDPAA 42 (248)
Q Consensus 3 ~~~~iiGp-nGSGKSTl~~~l~g~l~~~~G~i~i~~~d~~~ 42 (248)
.+++|.|+ .|+||||+...|+..+...+.+|.+++.|+..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRR 145 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 46788887 69999999999998877666789999988853
No 499
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.40 E-value=0.0023 Score=57.19 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 3 YAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 3 ~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+++|+||.|||||||...|+..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999999999876
No 500
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.38 E-value=0.0021 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCC
Q 025795 2 GYAQLVIGPAGSGKSTYCSSLYRHC 26 (248)
Q Consensus 2 ~~~~~iiGpnGSGKSTl~~~l~g~l 26 (248)
.+-++++|++|+|||||++.+.+-.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999988743
Done!