BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025796
MVVAGIFIFAHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQI
TGVGTELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVL
PFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPG
IAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVI
TKALTKSS

High Scoring Gene Products

Symbol, full name Information P value
ABA4
abscisic acid (ABA)-deficient 4 		protein from Arabidopsis thaliana 6.8e-56

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025796
        (248 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2019718 - symbol:ABA4 "abscisic acid (ABA)-def...   576  6.8e-56   1


>TAIR|locus:2019718 [details] [associations]
            symbol:ABA4 "abscisic acid (ABA)-deficient 4"
            species:3702 "Arabidopsis thaliana" [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009517 "PSII associated
            light-harvesting complex II" evidence=IGI] [GO:0010117
            "photoprotection" evidence=IGI] [GO:0032928 "regulation of
            superoxide anion generation" evidence=IMP] [GO:0009688 "abscisic
            acid biosynthetic process" evidence=IMP] [GO:0016122 "xanthophyll
            metabolic process" evidence=IMP] [GO:0042744 "hydrogen peroxide
            catabolic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009688 GO:GO:0009517
            GO:GO:0032928 GO:GO:0010117 GO:GO:0016122 EMBL:AY084717
            EMBL:BT024604 EMBL:AK175554 IPI:IPI00538404 RefSeq:NP_564889.1
            UniGene:At.35694 STRING:Q8LFP9 PaxDb:Q8LFP9 PRIDE:Q8LFP9
            EnsemblPlants:AT1G67080.1 GeneID:843028 KEGG:ath:AT1G67080
            TAIR:At1g67080 eggNOG:NOG08114 HOGENOM:HOG000093048
            InParanoid:Q8LFP9 OMA:KMFSSEM PhylomeDB:Q8LFP9
            ProtClustDB:CLSN2689055 BioCyc:ARA:AT1G67080-MONOMER
            ArrayExpress:Q8LFP9 Genevestigator:Q8LFP9 InterPro:IPR025461
            Pfam:PF14108 Uniprot:Q8LFP9
        Length = 220

 Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
 Identities = 110/178 (61%), Positives = 135/178 (75%)

Query:    67 LRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVLPFYTLM 126
             L   WSF+GGSR+ ++      + H+K   + ASWL+  Q+ S+VF +GT  VLPFYTLM
Sbjct:    38 LDHRWSFIGGSRISVQSNSYTVV-HKKFSGVRASWLTTTQIASSVFAVGTTAVLPFYTLM 96

Query:   127 VFAPKAELTKKSMESSIPXXXXXXXXXXXXXXSWTPDTLRLMFASKYWLPELPGIAKMFS 186
             V APKAE+TKK MESS+P              SWTP+TL+ MF+SKY LPEL GIAKMFS
Sbjct:    97 VVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYMFSSKYMLPELSGIAKMFS 156

Query:   187 SEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVITKAL 244
             SE+TLASAWIHLL VDLFAAR V++DGL+NQIETRHSVSLCLLFCP+GI++H +TKA+
Sbjct:   157 SEMTLASAWIHLLVVDLFAARQVYNDGLENQIETRHSVSLCLLFCPVGIVSHFVTKAI 214


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      248       234   0.00087  113 3  11 22  0.49    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  191 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.77u 0.18s 17.95t   Elapsed:  00:00:01
  Total cpu time:  17.77u 0.18s 17.95t   Elapsed:  00:00:01
  Start:  Sat May 11 02:58:31 2013   End:  Sat May 11 02:58:32 2013

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