BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025796
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
           Thermotoga Maritima, Tm379
 pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
           Thermotoga Maritima, Tm379
 pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
 pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
 pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
           Thermotoga Maritina
 pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
           Thermotoga Maritina
          Length = 293

 Score = 28.1 bits (61), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 172 KYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGL 214
           +Y+LP+ PG+     S + + S +   + +D F  + +  +G 
Sbjct: 43  EYFLPDFPGLLMTVESRVEMLSRYARTVVLDFFRIKDLTPEGF 85


>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
           Thermotoga Maritima
 pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
           Thermotoga Maritima
          Length = 293

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 172 KYWLPELPGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGL 214
           +Y+LP+ PG+     S +   S +   + +D F  + +  +G 
Sbjct: 43  EYFLPDFPGLLXTVESRVEXLSRYARTVVLDFFRIKDLTPEGF 85


>pdb|2X03|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
           Chondroitin Ac Lyase Y253 Mutant
 pdb|2X03|B Chain B, The X-Ray Structure Of The Streptomyces Coelicolor A3
           Chondroitin Ac Lyase Y253 Mutant
          Length = 765

 Score = 27.3 bits (59), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 27  LKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGT--ELRSEWSFLGGSRVIIRPQ 84
           L D+  G WG    D R             G+ + G+G+  E R  W FL  + V +   
Sbjct: 481 LADRAGGEWGAPKPDVRWVGGATDGEYAAVGQHLKGLGSTLEARKSWFFLDDAVVCLGAG 540

Query: 85  VT 86
           +T
Sbjct: 541 IT 542


>pdb|2WDA|A Chain A, The X-Ray Structure Of The Streptomyces Coelicolor A3
           Chondroitin Ac Lyase In Complex With Chondroitin
           Sulphate
 pdb|2WCO|A Chain A, Structures Of The Streptomyces Coelicolor A3(2) Hyaluronan
           Lyase In Complex With Oligosaccharide Substrates And An
           Inhibitor
          Length = 765

 Score = 27.3 bits (59), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 27  LKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGT--ELRSEWSFLGGSRVIIRPQ 84
           L D+  G WG    D R             G+ + G+G+  E R  W FL  + V +   
Sbjct: 481 LADRAGGEWGAPKPDVRWVGGATDGEYAAVGQHLKGLGSTLEARKSWFFLDDAVVCLGAG 540

Query: 85  VT 86
           +T
Sbjct: 541 IT 542


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,570,916
Number of Sequences: 62578
Number of extensions: 227936
Number of successful extensions: 430
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 4
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)