BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025796
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6BRD5|ACOX_DEBHA Acyl-coenzyme A oxidase OS=Debaryomyces hansenii (strain ATCC 36239
           / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=POX1
           PE=3 SV=2
          Length = 706

 Score = 32.0 bits (71), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 146 VVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSEITLASAWIHLLAVDLFA 205
           V L  L A+   LS   D +   F SK  +P L  +AK++S+ I L        A D F 
Sbjct: 548 VTLSKLNAHHFMLSEFLDRMD-SFESKQLVPYLESVAKLYSATIVLEK-----FAGD-FL 600

Query: 206 ARHVFHDGLQNQIETRHSVSLCLLFCP 232
           A+ VF   L  ++ ++H   LC    P
Sbjct: 601 AQGVFPPKLNGELNSKHIPELCKEIRP 627


>sp|Q5ZK74|ASHWN_CHICK Ashwin OS=Gallus gallus GN=RCJMB04_12m8 PE=2 SV=1
          Length = 241

 Score = 31.2 bits (69), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)

Query: 19  LCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVG 64
           + H + LP +D P   WG + E +R  + P+S N     + +T VG
Sbjct: 64  IQHAIPLPQRDLPKSRWGKMMEKKRKQNEPKSEN-----KSVTAVG 104


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,008,008
Number of Sequences: 539616
Number of extensions: 3365557
Number of successful extensions: 8065
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8064
Number of HSP's gapped (non-prelim): 6
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)