Query 025796
Match_columns 248
No_of_seqs 117 out of 139
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14108 DUF4281: Domain of un 100.0 2.7E-44 5.8E-49 295.2 12.8 126 109-238 1-129 (129)
2 PF11196 DUF2834: Protein of u 93.2 1.2 2.5E-05 35.5 9.5 64 179-243 30-95 (97)
3 PF13396 PLDc_N: Phospholipase 44.4 7.9 0.00017 26.0 0.1 42 199-241 2-43 (46)
4 PF04024 PspC: PspC domain; I 30.8 86 0.0019 22.9 3.8 21 224-245 36-56 (61)
5 PF00714 IFN-gamma: Interferon 24.3 19 0.00042 30.9 -0.7 18 13-30 2-19 (138)
6 PF04080 Per1: Per1-like ; In 14.3 74 0.0016 29.8 0.7 30 66-120 39-68 (267)
7 PF08333 DUF1725: Protein of u 13.8 1.3E+02 0.0027 18.1 1.3 11 204-214 3-13 (20)
8 PF11120 DUF2636: Protein of u 13.5 1.9E+02 0.0041 21.8 2.6 19 223-241 9-28 (62)
9 PF06667 PspB: Phage shock pro 12.9 2.1E+02 0.0046 22.1 2.7 23 222-244 9-31 (75)
10 PRK10697 DNA-binding transcrip 12.3 3.3E+02 0.0072 22.7 3.9 43 190-246 20-64 (118)
No 1
>PF14108 DUF4281: Domain of unknown function (DUF4281)
Probab=100.00 E-value=2.7e-44 Score=295.23 Aligned_cols=126 Identities=38% Similarity=0.659 Sum_probs=119.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHcCCCchhHHhhhcchhHHHHHHHHHHHHHhhcCcchhhhhhhccCCCCCHHHHHHhhcCc
Q 025796 109 STVFTLGTAGVLPFYTLMVFAPKAELTKKSMESSIPYVVLGVLYAYLLYLSWTPDTLRLMFASKYWLPELPGIAKMFSSE 188 (248)
Q Consensus 109 etlF~lan~~vLPfWlLMI~aPrw~~Tr~i~~S~lp~l~La~lY~~LL~~s~~p~~~~~~Fas~~~fpsL~gV~~LFs~~ 188 (248)
|++|+++|.+++|+|++||++||||+||++++|.+++++++++|+++++.++.+++.+.+. ++|||+||+++|++|
T Consensus 1 E~~F~~~~~~~lp~W~lmi~~P~~~~T~~~~~s~~~~~~l~~~Y~~ll~~~~~~~~~~~~~----~~~sL~~v~~lf~~~ 76 (129)
T PF14108_consen 1 ETLFNLANALALPFWLLMIFAPRWRVTRRLMRSPVPPLPLALAYVALLAPSLGPSGLGVMA----AFPSLEGVRQLFSSP 76 (129)
T ss_pred ChhHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHcCccchhhhc----cCCCHHHHHHHHcCc
Confidence 7999999999999999999999999999999999999999999999999999887765322 289999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHhhCC---cchhHHHHHhhhhhHHHHHH
Q 025796 189 ITLASAWIHLLAVDLFAARHVFHDGLQNQI---ETRHSVSLCLLFCPIGILTH 238 (248)
Q Consensus 189 ~~vaagWvHyLAfDLFVGRWI~~Da~~~GI---pt~hsLlLcLmfGPlGLL~y 238 (248)
++++++|+|||+|||||||||++|++|+|| ++.|++++|+|+||+||++|
T Consensus 77 ~~~~~~W~H~LafDLfvGrwi~~d~~~~gi~~~~~~~~L~Lt~~~GP~GLl~~ 129 (129)
T PF14108_consen 77 NAVLAGWVHYLAFDLFVGRWIYLDARRRGIPHLLTAPSLLLTLMFGPLGLLLY 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhhHHHhcC
Confidence 999999999999999999999999999999 77799999999999999987
No 2
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=93.20 E-value=1.2 Score=35.54 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=42.2
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHhhHhhCCcchhH-HHHHhhhh-hHHHHHHHHHHH
Q 025796 179 PGIAKMFSSEITLASAWIHLLAVDLFAARHVFHDGLQNQIETRHS-VSLCLLFC-PIGILTHVITKA 243 (248)
Q Consensus 179 ~gV~~LFs~~~~vaagWvHyLAfDLFVGRWI~~Da~~~GIpt~hs-LlLcLmfG-PlGLL~ylltra 243 (248)
+=+.+.++||......|==+++--. .--||+.|++|+|+..++. +++|+..| =.|+-+|+..|.
T Consensus 30 ~f~~~~~~n~as~~~~~Dl~i~ai~-~~vwi~~E~rr~~ir~~w~~i~~t~~vgvs~glPLyL~lRe 95 (97)
T PF11196_consen 30 LFFADAFANPASSFLSWDLLIAAIA-LLVWIVVEARRLGIRHWWLYIVLTFFVGVSFGLPLYLYLRE 95 (97)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788887555433322222222 2379999999999975544 56667777 788999988875
No 3
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=44.45 E-value=7.9 Score=25.97 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhHhhCCcchhHHHHHhhhhhHHHHHHHHH
Q 025796 199 LAVDLFAARHVFHDGLQNQIETRHSVSLCLLFCPIGILTHVIT 241 (248)
Q Consensus 199 LAfDLFVGRWI~~Da~~~GIpt~hsLlLcLmfGPlGLL~yllt 241 (248)
+++++++-..+.+|- ++.-+....++..+++.++|.+.|++.
T Consensus 2 ~il~i~~~~~i~~~~-~~~~~k~~W~~~i~~~P~iG~i~Yl~~ 43 (46)
T PF13396_consen 2 LILWIWALIDIIRRD-RSPSSKILWLIVILFFPIIGPILYLIF 43 (46)
T ss_pred eeeHHHHHHHHHhCC-CCCchhhHHHHHHHHHHHHHHhheEEE
Confidence 345667777777773 333443456777778889999998654
No 4
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=30.77 E-value=86 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHh
Q 025796 224 VSLCLLFCPIGILTHVITKALT 245 (248)
Q Consensus 224 LlLcLmfGPlGLL~ylltralt 245 (248)
++++++.|+ |++.|++.-.+.
T Consensus 36 v~l~~~~~~-~~l~Y~~~w~~l 56 (61)
T PF04024_consen 36 VVLTFFTGG-GILLYLILWLLL 56 (61)
T ss_pred HHHHHHHhH-HHHHHHHHHHHc
Confidence 556666666 999998875543
No 5
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=24.32 E-value=19 Score=30.90 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=5.4
Q ss_pred chhhccccCCCCCCCCCC
Q 025796 13 MAISSCLCHPLVLPLKDK 30 (248)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (248)
|++|+|+|+.++.-.||.
T Consensus 2 l~~s~~y~~~~l~~eIe~ 19 (138)
T PF00714_consen 2 LGSSGCYCQSNLIKEIEK 19 (138)
T ss_dssp ---------HCHHHHHHH
T ss_pred cccccccchhhHHHHHHH
Confidence 789999999987644443
No 6
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=14.31 E-value=74 Score=29.80 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.5
Q ss_pred cccccceecccceeeecccccceeeccccccceeccccCcccHhhHHHhhhhhHH
Q 025796 66 ELRSEWSFLGGSRVIIRPQVTKFIRHQKGFHIHASWLSGPQLVSTVFTLGTAGVL 120 (248)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~etlF~lan~~vL 120 (248)
..+|.|-|.. -+.-++.+|.+|++.|..+-
T Consensus 39 QfhGKWPF~R-------------------------v~GiQEp~Sv~FSllNl~~h 68 (267)
T PF04080_consen 39 QFHGKWPFKR-------------------------VLGIQEPASVLFSLLNLLAH 68 (267)
T ss_pred cccccccchh-------------------------hhcCchHHHHHHHHHhHHHH
Confidence 5789999863 35667789999999998554
No 7
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=13.83 E-value=1.3e+02 Score=18.11 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=9.0
Q ss_pred HHHHHHHHhhH
Q 025796 204 FAARHVFHDGL 214 (248)
Q Consensus 204 FVGRWI~~Da~ 214 (248)
|+|.|+-+++.
T Consensus 3 F~~kWmeLE~I 13 (20)
T PF08333_consen 3 FAGKWMELENI 13 (20)
T ss_pred hHHHHHHHHHH
Confidence 78999988764
No 8
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=13.54 E-value=1.9e+02 Score=21.76 Aligned_cols=19 Identities=37% Similarity=0.779 Sum_probs=13.9
Q ss_pred HHHHH-hhhhhHHHHHHHHH
Q 025796 223 SVSLC-LLFCPIGILTHVIT 241 (248)
Q Consensus 223 sLlLc-LmfGPlGLL~yllt 241 (248)
.+++| +.|.|+|.+.+--.
T Consensus 9 ii~l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRWL 28 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHh
Confidence 46677 56889999988444
No 9
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=12.88 E-value=2.1e+02 Score=22.08 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.7
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHH
Q 025796 222 HSVSLCLLFCPIGILTHVITKAL 244 (248)
Q Consensus 222 hsLlLcLmfGPlGLL~ylltral 244 (248)
+.+++.+|.+|+.|..|..+|+-
T Consensus 9 plivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 9 PLIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567778999999999998863
No 10
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=12.28 E-value=3.3e+02 Score=22.66 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHhhCCcchhHHHHHhhhh--hHHHHHHHHHHHHhc
Q 025796 190 TLASAWIHLLAVDLFAARHVFHDGLQNQIETRHSVSLCLLFC--PIGILTHVITKALTK 246 (248)
Q Consensus 190 ~vaagWvHyLAfDLFVGRWI~~Da~~~GIpt~hsLlLcLmfG--PlGLL~ylltralt~ 246 (248)
++.+|=+||+=+|...=| ...++..++| ++|++.|++.-.+..
T Consensus 20 GVCaGiA~y~gi~~~~VR--------------l~~vl~~~~~~~~~~~~~Yi~l~~~lp 64 (118)
T PRK10697 20 GVCAGIAHYFDVPVKLVR--------------IIVVLSIFFGLFVFTLVAYIILSFALD 64 (118)
T ss_pred eeHHHHHHHHCCCHHHHH--------------HHHHHHHHHhhchHHHHHHHHHHHhcc
Confidence 455666666666655322 2223333333 678999988766653
Done!