Query 025796
Match_columns 248
No_of_seqs 117 out of 139
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hxi_C Eukaryotic translation 14.7 53 0.0018 19.2 0.7 10 75-84 2-11 (21)
2 1omo_A Alanine dehydrogenase; 8.2 2E+02 0.007 25.2 2.7 20 200-219 295-314 (322)
3 3gyc_A Putative glycoside hydr 7.8 78 0.0027 30.0 -0.3 43 69-111 80-125 (393)
4 1x7d_A Ornithine cyclodeaminas 7.0 2.4E+02 0.0082 25.3 2.6 23 200-222 298-320 (350)
5 1afo_A Glycophorin A; integral 4.4 8.6E+02 0.03 16.0 3.4 19 220-238 11-29 (40)
6 3d06_A Cellular tumor antigen 4.2 2.6E+02 0.0089 23.9 0.9 41 10-65 141-181 (200)
7 3h8d_E Disabled homolog 2; myo 4.1 1.7E+02 0.0057 20.2 -0.3 9 12-20 14-22 (48)
8 2xip_A Tumour protein P73; pho 3.9 2.9E+02 0.0099 23.8 1.0 41 10-65 144-184 (208)
9 3kdv_A DDRB, DNA damage respon 3.6 4.6E+02 0.016 22.3 1.9 24 67-91 60-83 (184)
10 4gc0_A D-xylose-proton symport 3.6 7.9E+02 0.027 21.0 3.5 12 177-188 470-481 (491)
No 1
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=14.65 E-value=53 Score=19.17 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=7.3
Q ss_pred ccceeeeccc
Q 025796 75 GGSRVIIRPQ 84 (248)
Q Consensus 75 ~~~~~~~~~~ 84 (248)
||+||+-.-+
T Consensus 2 GGTrIiYdR~ 11 (21)
T 3hxi_C 2 GSGRIIYDRK 11 (26)
T ss_pred CceEEEEeHH
Confidence 8899886544
No 2
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=8.18 E-value=2e+02 Score=25.18 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHhhCCc
Q 025796 200 AVDLFAARHVFHDGLQNQIE 219 (248)
Q Consensus 200 AfDLFVGRWI~~Da~~~GIp 219 (248)
..|+-+++++|..++++|+-
T Consensus 295 ~~Dla~a~~v~~~a~~~g~G 314 (322)
T 1omo_A 295 IQDVAVAKVVYENALSKNVG 314 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHcCCc
Confidence 57999999999999999974
No 3
>3gyc_A Putative glycoside hydrolase; YP_001304622.1, structural GEN joint center for structural genomics, JCSG; HET: MSE; 1.85A {Parabacteroides distasonis atcc 8503}
Probab=7.78 E-value=78 Score=29.99 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=35.8
Q ss_pred ccceecccceeeecccccceeeccccccc---eeccccCcccHhhH
Q 025796 69 SEWSFLGGSRVIIRPQVTKFIRHQKGFHI---HASWLSGPQLVSTV 111 (248)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~s~~~~etl 111 (248)
++|.-=||.+|-++|.+.+++...|+.+. ..||++++......
T Consensus 80 rrW~~pg~~evdgr~~L~elf~aAk~hd~~ViLSSWYQQspseal~ 125 (393)
T 3gyc_A 80 QDWGSPDMNEVQVQPNLNLFLSKCKERDIKVGLSSWYRLDVDEVCL 125 (393)
T ss_dssp SSSSCSSCEEECCTTHHHHHHHHHHHTTCEEEEECCCCCBTTCGGG
T ss_pred cccCCCCCceechHHHHHHHHHHHHHcCCEEEEehhhhcCHHHHHh
Confidence 38988889999999999999999888886 68998888763333
No 4
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*
Probab=7.03 E-value=2.4e+02 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhHhhCCcchh
Q 025796 200 AVDLFAARHVFHDGLQNQIETRH 222 (248)
Q Consensus 200 AfDLFVGRWI~~Da~~~GIpt~h 222 (248)
..|+-+++.+|..++++|+-+..
T Consensus 298 ~~Dla~a~~v~~~a~~~g~G~~~ 320 (350)
T 1x7d_A 298 LEDYTVLRYVLQQAEKRGMGTKI 320 (350)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEC
T ss_pred HHHHHHHHHHHHHHHHcCCceEE
Confidence 57999999999999999985443
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=4.36 E-value=8.6e+02 Score=16.00 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=14.0
Q ss_pred chhHHHHHhhhhhHHHHHH
Q 025796 220 TRHSVSLCLLFCPIGILTH 238 (248)
Q Consensus 220 t~hsLlLcLmfGPlGLL~y 238 (248)
..-..++|.|+|=+|..+.
T Consensus 11 ~i~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3456789999998886544
No 6
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ...
Probab=4.23 E-value=2.6e+02 Score=23.92 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=27.1
Q ss_pred hhhchhhccccCCCCCCCCCCCCCcccccCCCceeeecccccchhhhccccccccc
Q 025796 10 AHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGT 65 (248)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (248)
..-|-+|||..- ..++.-...|.+-..+.+++|++...+|+
T Consensus 141 ~~FmC~sSC~gg---------------~nRRpi~liftLE~~~G~vLGr~~~~vRI 181 (200)
T 3d06_A 141 YNYMCNSSCMGG---------------MNRSPILTIITLEDSSGNLLGRNSFEVRV 181 (200)
T ss_dssp EEECSCTTCTTT---------------TTTCCEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEeEccCCCCCc---------------cccceEEEEEEEECCCCCEeceeEEeeEE
Confidence 345778888531 12233567788877667899999877664
No 7
>3h8d_E Disabled homolog 2; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Rattus norvegicus}
Probab=4.08 E-value=1.7e+02 Score=20.17 Aligned_cols=9 Identities=44% Similarity=0.309 Sum_probs=6.9
Q ss_pred hchhhcccc
Q 025796 12 SMAISSCLC 20 (248)
Q Consensus 12 ~~~~~~~~~ 20 (248)
+=||++||.
T Consensus 14 sgAFssyF~ 22 (48)
T 3h8d_E 14 SSAFSSYFN 22 (48)
T ss_dssp CHHHHHHHH
T ss_pred chHHHHHHh
Confidence 458999993
No 8
>2xip_A Tumour protein P73; phosphoprotein, tumor suppressor, transcription, metal-bindi nucleus, cell cycle, transcription regulation; HET: TAM; 1.82A {Homo sapiens} PDB: 2xwc_A* 4a63_A 3vd0_A* 3vd1_A* 3vd2_A* 3qyn_A 3qym_A 3us0_A 3us1_A 3us2_A
Probab=3.88 E-value=2.9e+02 Score=23.79 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=26.5
Q ss_pred hhhchhhccccCCCCCCCCCCCCCcccccCCCceeeecccccchhhhccccccccc
Q 025796 10 AHSMAISSCLCHPLVLPLKDKPIGTWGNVGEDQRLTSAPRSMNAETFGRQITGVGT 65 (248)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (248)
..-|-+|||..- ..++.-...|.+-..+.+++|++...+|+
T Consensus 144 ~~FmC~sSC~gg---------------~nRRpi~lifTLE~~~G~vLGR~~~~vRI 184 (208)
T 2xip_A 144 YNFMCNSSCVGG---------------MNRRPILIIITLEMRDGQVLGRRSFEGRI 184 (208)
T ss_dssp EEECSCGGGCC------------------CCCEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEeEccCCCCCc---------------cccceEEEEEEEECCCCCEeeeeEEeeEE
Confidence 345778888531 12234567788877667899999877664
No 9
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis} PDB: 4exw_A
Probab=3.62 E-value=4.6e+02 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=16.0
Q ss_pred ccccceecccceeeecccccceeec
Q 025796 67 LRSEWSFLGGSRVIIRPQVTKFIRH 91 (248)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (248)
-.=||++||-.-+- .|.-...|.|
T Consensus 60 ~~FDW~lIGAr~~t-~~eGe~~V~~ 83 (184)
T 3kdv_A 60 PDFDWSLIGARKWT-NPEGEEMILH 83 (184)
T ss_dssp GGBCGGGGTCEEEE-CSSSCEEEEE
T ss_pred CCcChhhhccEEee-cCCCcEEEEE
Confidence 35699999876555 7766555443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=3.59 E-value=7.9e+02 Score=20.99 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=9.3
Q ss_pred CHHHHHHhhcCc
Q 025796 177 ELPGIAKMFSSE 188 (248)
Q Consensus 177 sL~gV~~LFs~~ 188 (248)
+||+|.++|+++
T Consensus 470 tLeei~~~f~~~ 481 (491)
T 4gc0_A 470 TLEELEALWEPE 481 (491)
T ss_dssp CHHHHGGGTC--
T ss_pred CHHHHHHHhCCC
Confidence 799999999775
Done!