Query 025796
Match_columns 248
No_of_seqs 117 out of 139
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 17:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025796.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025796hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i9ea_ b.1.1.1 (A:) T-cell an 13.2 33 0.0024 23.6 1.3 16 72-87 100-115 (115)
2 d2baia1 g.87.1.1 (A:1-32) Poly 13.1 19 0.0014 21.1 -0.0 16 8-23 9-24 (32)
3 d2vgna2 c.55.4.2 (A:136-277) D 11.5 32 0.0023 25.7 0.8 24 73-96 21-44 (142)
4 d1x7da_ c.2.1.13 (A:) Ornithin 9.5 75 0.0055 26.8 2.6 27 200-226 297-323 (340)
5 d1ogad1 b.1.1.1 (D:3-117) T-ce 8.6 67 0.0049 22.1 1.6 18 69-86 95-112 (115)
6 d1omoa_ c.2.1.13 (A:) Archaeal 7.9 1E+02 0.0073 25.2 2.7 20 200-219 295-314 (320)
7 d2ak4d1 b.1.1.1 (D:1-116) T-ce 7.4 1.6E+02 0.012 19.5 3.3 12 72-83 103-114 (114)
8 d1tdha3 g.39.1.8 (A:247-290) E 7.3 54 0.0039 20.6 0.5 24 16-39 14-37 (44)
9 d2esvd1 b.1.1.1 (D:4-116) T-ce 7.0 86 0.0062 21.2 1.5 17 68-84 94-110 (110)
10 d1j8hd1 b.1.1.1 (D:1-117) T-ce 6.5 82 0.006 21.3 1.2 14 71-84 102-115 (115)
No 1
>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}
Probab=13.20 E-value=33 Score=23.56 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=13.3
Q ss_pred eecccceeeecccccc
Q 025796 72 SFLGGSRVIIRPQVTK 87 (248)
Q Consensus 72 ~~~~~~~~~~~~~~~~ 87 (248)
-|=.|+|++|+|++.|
T Consensus 100 ~FG~GT~L~V~p~~~~ 115 (115)
T d1i9ea_ 100 TFGSGTKVIVLPYIQN 115 (115)
T ss_dssp EECCCEEEEEECCCCC
T ss_pred EECCCEEEEEecCCCC
Confidence 4778999999998754
No 2
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=13.10 E-value=19 Score=21.10 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=11.8
Q ss_pred hhhhhchhhccccCCC
Q 025796 8 IFAHSMAISSCLCHPL 23 (248)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (248)
|-||||.|--|---|.
T Consensus 9 icahsmtfeecpkcsa 24 (32)
T d2baia1 9 ICAHSMTFEECPKCSA 24 (32)
T ss_dssp CCSSSSCGGGHHHHHC
T ss_pred HHHhhccHhhCcchhH
Confidence 6789999998843333
No 3
>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=11.51 E-value=32 Score=25.67 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=14.5
Q ss_pred ecccceeeecccccceeecccccc
Q 025796 73 FLGGSRVIIRPQVTKFIRHQKGFH 96 (248)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~ 96 (248)
++++++++++.+++..+|++++.|
T Consensus 21 li~~~~t~~~~~Ie~~iP~K~~~~ 44 (142)
T d2vgna2 21 LVTSSSTILKQKIEYSMPKKKRTT 44 (142)
T ss_dssp EECSSCEEEEEEEEC---------
T ss_pred EEcCCEEEEEEEEEEeCCCCcCCC
Confidence 789999999999999999655433
No 4
>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}
Probab=9.48 E-value=75 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhHhhCCcchhHHHH
Q 025796 200 AVDLFAARHVFHDGLQNQIETRHSVSL 226 (248)
Q Consensus 200 AfDLFVGRWI~~Da~~~GIpt~hsLlL 226 (248)
..|+-+++++|..|+++|+-+..-|++
T Consensus 297 i~Dla~a~~v~~~A~~~g~G~~l~l~~ 323 (340)
T d1x7da_ 297 LEDYTVLRYVLQQAEKRGMGTKIDLVP 323 (340)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEECCSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeecc
Confidence 479999999999999999865544443
No 5
>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=8.60 E-value=67 Score=22.15 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=14.9
Q ss_pred ccceecccceeeeccccc
Q 025796 69 SEWSFLGGSRVIIRPQVT 86 (248)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~ 86 (248)
..+-|=.|+++.|+|++.
T Consensus 95 ~~~~FG~GT~LtV~~~~~ 112 (115)
T d1ogad1 95 GNLIFGKGTKLSVKPNIQ 112 (115)
T ss_dssp SSEEECCCEEEEEECCCS
T ss_pred CCcEECCCEEEEEecCCC
Confidence 356798999999999764
No 6
>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.89 E-value=1e+02 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHhhCCc
Q 025796 200 AVDLFAARHVFHDGLQNQIE 219 (248)
Q Consensus 200 AfDLFVGRWI~~Da~~~GIp 219 (248)
..|+-+++.+|..|+++|+=
T Consensus 295 ~~Dla~a~~v~~~A~~~g~G 314 (320)
T d1omoa_ 295 IQDVAVAKVVYENALSKNVG 314 (320)
T ss_dssp HHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 47999999999999999974
No 7
>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=7.41 E-value=1.6e+02 Score=19.49 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=10.3
Q ss_pred eecccceeeecc
Q 025796 72 SFLGGSRVIIRP 83 (248)
Q Consensus 72 ~~~~~~~~~~~~ 83 (248)
-|-.|+++.|+|
T Consensus 103 ~FG~GT~L~V~p 114 (114)
T d2ak4d1 103 IFGTGTRLQVFP 114 (114)
T ss_dssp EECCCEEEEEEC
T ss_pred EECCCEEEEEEC
Confidence 578899999987
No 8
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=54 Score=20.62 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=19.5
Q ss_pred hccccCCCCCCCCCCCCCcccccC
Q 025796 16 SSCLCHPLVLPLKDKPIGTWGNVG 39 (248)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ 39 (248)
--|+|.+-.+-..|+.+||+---|
T Consensus 14 LqCY~~pgM~sL~D~~GRTIWF~G 37 (44)
T d1tdha3 14 LRCYGMPGMSSLQDRHGRTIWFQG 37 (44)
T ss_dssp CSSTTCTTCEEEECTTSCEEEESS
T ss_pred HHHHcCCchhhhhccCCCEEEecC
Confidence 359999999989999999876544
No 9
>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=6.96 E-value=86 Score=21.18 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.7
Q ss_pred cccceecccceeeeccc
Q 025796 68 RSEWSFLGGSRVIIRPQ 84 (248)
Q Consensus 68 ~~~~~~~~~~~~~~~~~ 84 (248)
...+-|=.|+|+.|+|+
T Consensus 94 ~~~~~FG~GT~L~V~p~ 110 (110)
T d2esvd1 94 TGKLIFGQGTTLQVKPD 110 (110)
T ss_dssp SCCCCCCCCEEEEEECC
T ss_pred CCccEECCCEEEEEEeC
Confidence 34567889999999985
No 10
>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=6.50 E-value=82 Score=21.33 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=12.0
Q ss_pred ceecccceeeeccc
Q 025796 71 WSFLGGSRVIIRPQ 84 (248)
Q Consensus 71 ~~~~~~~~~~~~~~ 84 (248)
+-|=+|++++|.|+
T Consensus 102 ~~FG~GT~L~V~p~ 115 (115)
T d1j8hd1 102 LTFGTGTRLTIIPN 115 (115)
T ss_dssp EEECCCEEEEEECC
T ss_pred cEECCCEEEEEEeC
Confidence 45889999999986
Done!