Query 025797
Match_columns 248
No_of_seqs 229 out of 1225
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 1.7E-66 3.7E-71 498.0 18.3 231 3-242 1-233 (442)
2 PTZ00434 cytosolic glyceraldeh 100.0 8.8E-58 1.9E-62 429.1 14.6 157 85-242 2-171 (361)
3 PF00044 Gp_dh_N: Glyceraldehy 100.0 2.7E-57 5.8E-62 381.3 11.0 149 87-239 1-150 (151)
4 PLN03096 glyceraldehyde-3-phos 100.0 1.1E-55 2.3E-60 419.5 17.2 203 35-243 13-217 (395)
5 PRK08289 glyceraldehyde-3-phos 100.0 8.5E-56 1.8E-60 426.4 15.7 186 49-242 96-293 (477)
6 smart00846 Gp_dh_N Glyceraldeh 100.0 3.7E-52 8.1E-57 348.3 15.7 148 87-239 1-148 (149)
7 PTZ00023 glyceraldehyde-3-phos 100.0 2E-52 4.4E-57 390.4 14.3 153 85-242 1-156 (337)
8 PRK07403 glyceraldehyde-3-phos 100.0 3.5E-52 7.5E-57 388.8 14.3 155 87-242 2-158 (337)
9 COG0057 GapA Glyceraldehyde-3- 100.0 1.6E-51 3.4E-56 382.7 15.4 154 86-243 1-157 (335)
10 PRK15425 gapA glyceraldehyde-3 100.0 1.2E-51 2.6E-56 384.3 14.5 152 85-242 1-154 (331)
11 PTZ00353 glycosomal glyceralde 100.0 1.2E-51 2.6E-56 385.8 14.4 153 85-243 1-158 (342)
12 PRK07729 glyceraldehyde-3-phos 100.0 4.6E-51 1E-55 382.0 14.3 154 85-242 1-156 (343)
13 TIGR01534 GAPDH-I glyceraldehy 100.0 2.5E-50 5.5E-55 374.8 14.0 152 88-242 1-156 (327)
14 PLN02272 glyceraldehyde-3-phos 100.0 3.4E-49 7.3E-54 377.4 18.4 151 87-242 86-239 (421)
15 PRK13535 erythrose 4-phosphate 100.0 4E-47 8.7E-52 354.5 14.6 155 87-243 2-159 (336)
16 PLN02358 glyceraldehyde-3-phos 100.0 5.8E-47 1.3E-51 353.6 14.8 153 85-242 4-160 (338)
17 PRK08955 glyceraldehyde-3-phos 100.0 1.2E-46 2.5E-51 351.1 14.5 154 85-243 1-157 (334)
18 TIGR01532 E4PD_g-proteo D-eryt 100.0 7.2E-45 1.6E-49 337.7 14.5 153 88-242 1-156 (325)
19 KOG0657 Glyceraldehyde 3-phosp 100.0 5.4E-38 1.2E-42 285.7 6.8 136 97-242 1-139 (285)
20 TIGR01546 GAPDH-II_archae glyc 100.0 2.9E-29 6.4E-34 234.4 10.4 136 89-242 1-141 (333)
21 PRK04207 glyceraldehyde-3-phos 99.8 3.1E-21 6.7E-26 179.9 9.7 137 86-242 1-144 (341)
22 PRK14874 aspartate-semialdehyd 98.8 7.2E-09 1.6E-13 96.5 7.8 122 87-239 2-128 (334)
23 TIGR01296 asd_B aspartate-semi 98.5 4.1E-07 8.9E-12 85.3 7.7 121 88-239 1-126 (339)
24 PRK08300 acetaldehyde dehydrog 97.6 0.00016 3.4E-09 67.8 6.3 125 85-238 3-130 (302)
25 PRK13301 putative L-aspartate 97.4 0.00035 7.5E-09 64.7 6.6 38 85-122 1-38 (267)
26 PRK08664 aspartate-semialdehyd 97.4 0.0003 6.5E-09 66.0 6.2 134 85-239 2-149 (349)
27 TIGR00036 dapB dihydrodipicoli 97.2 0.00048 1E-08 62.5 5.3 33 87-121 2-35 (266)
28 PRK13303 L-aspartate dehydroge 97.2 0.0011 2.4E-08 60.1 7.1 32 87-120 2-33 (265)
29 TIGR03215 ac_ald_DH_ac acetald 96.9 0.002 4.3E-08 59.9 6.4 122 86-239 1-125 (285)
30 PF01118 Semialdhyde_dh: Semia 96.9 0.0009 1.9E-08 53.4 3.4 112 88-226 1-117 (121)
31 PRK06270 homoserine dehydrogen 96.9 0.0026 5.6E-08 59.7 7.0 37 85-121 1-44 (341)
32 TIGR00978 asd_EA aspartate-sem 96.9 0.003 6.6E-08 59.1 7.4 132 87-239 1-145 (341)
33 TIGR01921 DAP-DH diaminopimela 96.8 0.0034 7.4E-08 59.5 7.3 90 86-209 3-92 (324)
34 PRK06813 homoserine dehydrogen 96.6 0.0053 1.2E-07 58.4 7.0 37 85-121 1-44 (346)
35 PRK13304 L-aspartate dehydroge 96.4 0.0087 1.9E-07 54.2 6.9 34 87-121 2-35 (265)
36 PRK13302 putative L-aspartate 96.4 0.012 2.6E-07 53.7 7.4 36 85-121 5-40 (271)
37 PF01113 DapB_N: Dihydrodipico 96.3 0.0064 1.4E-07 49.1 4.8 33 87-121 1-34 (124)
38 PRK06392 homoserine dehydrogen 96.1 0.0084 1.8E-07 56.6 4.8 35 87-121 1-40 (326)
39 COG0460 ThrA Homoserine dehydr 95.9 0.017 3.8E-07 55.0 6.0 102 85-209 2-113 (333)
40 PRK00048 dihydrodipicolinate r 95.8 0.019 4.1E-07 51.8 5.6 34 86-121 1-35 (257)
41 COG1712 Predicted dinucleotide 95.6 0.036 7.8E-07 51.0 6.7 34 87-121 1-34 (255)
42 cd01076 NAD_bind_1_Glu_DH NAD( 95.5 0.12 2.5E-06 46.4 9.5 34 85-121 30-63 (227)
43 PRK06901 aspartate-semialdehyd 95.1 0.15 3.3E-06 48.6 9.5 120 86-238 3-128 (322)
44 PRK06349 homoserine dehydrogen 94.9 0.062 1.3E-06 52.1 6.5 37 85-121 2-45 (426)
45 COG0289 DapB Dihydrodipicolina 94.7 0.15 3.3E-06 47.4 8.2 34 86-121 2-36 (266)
46 PRK08040 putative semialdehyde 94.5 0.36 7.7E-06 46.0 10.4 122 85-238 3-130 (336)
47 PRK00436 argC N-acetyl-gamma-g 94.5 0.15 3.2E-06 48.1 7.7 124 85-238 1-148 (343)
48 PF02826 2-Hacid_dh_C: D-isome 94.2 0.074 1.6E-06 45.1 4.7 33 87-122 37-69 (178)
49 cd05211 NAD_bind_Glu_Leu_Phe_V 94.1 0.33 7.2E-06 43.2 8.7 34 85-121 22-55 (217)
50 PRK11579 putative oxidoreducta 94.0 0.2 4.4E-06 46.4 7.4 93 86-210 4-97 (346)
51 PF01408 GFO_IDH_MocA: Oxidore 93.8 0.16 3.5E-06 39.1 5.5 95 87-210 1-95 (120)
52 TIGR01745 asd_gamma aspartate- 93.7 0.2 4.3E-06 48.4 7.0 125 88-242 2-134 (366)
53 COG4091 Predicted homoserine d 93.3 0.084 1.8E-06 51.5 3.7 92 85-188 16-113 (438)
54 PRK05671 aspartate-semialdehyd 92.9 0.53 1.1E-05 44.7 8.3 124 86-238 4-129 (336)
55 PLN02477 glutamate dehydrogena 92.2 0.95 2.1E-05 44.3 9.3 33 86-121 206-238 (410)
56 PRK08410 2-hydroxyacid dehydro 91.8 0.21 4.6E-06 46.5 4.2 32 86-120 145-176 (311)
57 COG1063 Tdh Threonine dehydrog 91.7 0.83 1.8E-05 42.8 8.1 100 88-211 171-273 (350)
58 PRK06487 glycerate dehydrogena 91.5 0.26 5.7E-06 46.0 4.5 32 87-121 149-180 (317)
59 PF03807 F420_oxidored: NADP o 91.4 0.41 9E-06 35.7 4.7 42 88-130 1-42 (96)
60 PRK06598 aspartate-semialdehyd 90.8 0.78 1.7E-05 44.4 7.1 121 87-237 2-132 (369)
61 PRK06932 glycerate dehydrogena 90.7 0.32 6.9E-06 45.4 4.2 31 87-120 148-178 (314)
62 PRK06728 aspartate-semialdehyd 89.9 2 4.3E-05 41.2 9.0 120 85-238 4-130 (347)
63 PRK08374 homoserine dehydrogen 89.8 0.55 1.2E-05 44.3 5.0 37 85-121 1-44 (336)
64 PLN02928 oxidoreductase family 89.8 0.42 9.1E-06 45.3 4.3 32 87-121 160-191 (347)
65 TIGR01850 argC N-acetyl-gamma- 89.7 1.4 2.9E-05 41.7 7.6 123 87-238 1-148 (346)
66 cd05313 NAD_bind_2_Glu_DH NAD( 89.6 0.59 1.3E-05 43.0 5.0 51 85-138 37-96 (254)
67 COG2344 AT-rich DNA-binding pr 89.3 1.1 2.4E-05 40.4 6.3 103 85-216 83-185 (211)
68 PRK05472 redox-sensing transcr 89.2 0.67 1.5E-05 40.5 4.8 97 86-210 84-180 (213)
69 PRK11790 D-3-phosphoglycerate 89.1 0.5 1.1E-05 45.8 4.3 30 87-119 152-181 (409)
70 PRK06436 glycerate dehydrogena 89.1 0.52 1.1E-05 44.0 4.3 32 86-120 122-153 (303)
71 PRK15409 bifunctional glyoxyla 88.9 0.53 1.2E-05 44.2 4.2 31 86-119 145-176 (323)
72 PRK07574 formate dehydrogenase 88.7 0.55 1.2E-05 45.5 4.2 31 87-120 193-223 (385)
73 PRK13243 glyoxylate reductase; 88.4 0.61 1.3E-05 43.8 4.3 32 86-120 150-181 (333)
74 COG0111 SerA Phosphoglycerate 88.3 0.62 1.3E-05 44.0 4.3 31 87-120 143-173 (324)
75 PRK10206 putative oxidoreducta 88.0 1.3 2.7E-05 41.5 6.1 96 86-210 1-97 (344)
76 COG0136 Asd Aspartate-semialde 87.6 1.9 4.1E-05 41.4 7.1 124 87-238 2-131 (334)
77 PLN02306 hydroxypyruvate reduc 87.4 0.75 1.6E-05 44.5 4.3 31 86-119 165-196 (386)
78 COG1052 LdhA Lactate dehydroge 87.1 0.49 1.1E-05 44.8 2.8 31 87-120 147-177 (324)
79 PLN02775 Probable dihydrodipic 86.6 2.3 5E-05 40.0 6.9 34 85-121 10-44 (286)
80 PRK15469 ghrA bifunctional gly 86.5 0.98 2.1E-05 42.2 4.4 31 87-120 137-167 (312)
81 TIGR01202 bchC 2-desacetyl-2-h 86.4 2.6 5.6E-05 38.1 7.0 87 88-209 147-233 (308)
82 PLN02383 aspartate semialdehyd 86.2 3.1 6.8E-05 39.6 7.7 126 85-239 6-138 (344)
83 smart00859 Semialdhyde_dh Semi 84.9 2 4.4E-05 33.7 5.0 31 88-120 1-32 (122)
84 PRK12480 D-lactate dehydrogena 84.9 1.3 2.8E-05 41.7 4.4 31 87-120 147-177 (330)
85 PRK14030 glutamate dehydrogena 84.8 5 0.00011 39.9 8.6 71 56-138 207-286 (445)
86 COG3804 Uncharacterized conser 84.7 1.3 2.7E-05 42.4 4.2 34 85-120 1-34 (350)
87 PRK15438 erythronate-4-phospha 84.6 1.3 2.7E-05 43.0 4.3 31 86-119 116-146 (378)
88 PLN03139 formate dehydrogenase 84.4 1.2 2.5E-05 43.3 4.0 31 86-119 199-229 (386)
89 PRK05447 1-deoxy-D-xylulose 5- 84.0 3.5 7.7E-05 40.3 7.1 111 87-206 2-120 (385)
90 PF03446 NAD_binding_2: NAD bi 83.6 1.8 4E-05 35.9 4.4 30 87-119 2-31 (163)
91 PLN02256 arogenate dehydrogena 83.5 2.4 5.2E-05 39.5 5.5 34 85-121 35-68 (304)
92 PRK08229 2-dehydropantoate 2-r 82.9 5 0.00011 36.8 7.3 32 85-119 1-32 (341)
93 PRK11880 pyrroline-5-carboxyla 82.8 1.8 3.9E-05 38.3 4.3 24 85-108 1-24 (267)
94 cd01075 NAD_bind_Leu_Phe_Val_D 82.2 2 4.4E-05 37.4 4.3 31 87-121 29-59 (200)
95 TIGR01327 PGDH D-3-phosphoglyc 82.1 1.8 3.8E-05 43.3 4.3 31 87-120 139-169 (525)
96 PRK13581 D-3-phosphoglycerate 81.7 1.8 4E-05 43.2 4.3 32 86-120 140-171 (526)
97 COG1062 AdhC Zn-dependent alco 81.5 3.1 6.8E-05 40.5 5.6 102 87-211 187-289 (366)
98 PF03435 Saccharop_dh: Sacchar 81.3 1.5 3.3E-05 41.1 3.4 94 89-204 1-95 (386)
99 PRK07634 pyrroline-5-carboxyla 80.5 2.9 6.2E-05 36.4 4.6 36 86-121 4-40 (245)
100 PRK00257 erythronate-4-phospha 79.5 2.7 5.9E-05 40.7 4.5 31 86-119 116-146 (381)
101 PRK13403 ketol-acid reductoiso 79.5 2.6 5.6E-05 40.6 4.3 32 87-121 17-48 (335)
102 TIGR02853 spore_dpaA dipicolin 79.2 2.8 6E-05 38.8 4.3 32 87-121 152-183 (287)
103 KOG2741 Dimeric dihydrodiol de 79.0 2.9 6.3E-05 40.5 4.5 56 85-141 5-65 (351)
104 cd01483 E1_enzyme_family Super 78.6 1.3 2.8E-05 35.8 1.7 104 88-196 1-109 (143)
105 PRK08605 D-lactate dehydrogena 78.5 2.9 6.2E-05 39.3 4.2 32 86-119 146-177 (332)
106 PRK11559 garR tartronate semia 78.4 2.9 6.4E-05 37.6 4.1 31 86-119 2-32 (296)
107 PTZ00075 Adenosylhomocysteinas 78.2 3 6.5E-05 41.8 4.5 30 87-119 255-284 (476)
108 KOG0069 Glyoxylate/hydroxypyru 77.5 1.8 3.8E-05 41.7 2.5 22 85-106 161-182 (336)
109 COG0569 TrkA K+ transport syst 77.4 3.1 6.8E-05 37.0 4.0 31 87-120 1-31 (225)
110 PLN02700 homoserine dehydrogen 77.2 4.2 9E-05 39.6 5.0 37 85-121 2-44 (377)
111 PLN02712 arogenate dehydrogena 77.2 3.2 6.9E-05 42.9 4.5 34 85-121 368-401 (667)
112 PRK09880 L-idonate 5-dehydroge 77.2 12 0.00026 34.1 7.8 96 87-208 171-267 (343)
113 cd08230 glucose_DH Glucose deh 76.5 13 0.00028 34.1 7.8 97 87-210 174-272 (355)
114 PF03447 NAD_binding_3: Homose 75.9 1.3 2.9E-05 34.6 1.1 29 93-121 1-30 (117)
115 TIGR03366 HpnZ_proposed putati 75.7 7.5 0.00016 34.5 5.9 98 87-209 122-220 (280)
116 PLN02494 adenosylhomocysteinas 75.4 4 8.6E-05 41.0 4.4 30 87-119 255-284 (477)
117 PLN02712 arogenate dehydrogena 75.3 4.1 9E-05 42.1 4.7 34 85-121 51-84 (667)
118 PRK09414 glutamate dehydrogena 75.3 4.2 9E-05 40.4 4.6 33 85-120 231-263 (445)
119 COG0673 MviM Predicted dehydro 75.2 6.7 0.00014 35.4 5.6 36 85-121 2-38 (342)
120 cd00755 YgdL_like Family of ac 75.2 3 6.6E-05 37.6 3.3 105 86-195 11-121 (231)
121 cd08237 ribitol-5-phosphate_DH 74.2 9.2 0.0002 35.1 6.3 20 87-106 165-184 (341)
122 cd08298 CAD2 Cinnamyl alcohol 74.0 15 0.00033 32.7 7.4 88 87-207 169-256 (329)
123 PLN02688 pyrroline-5-carboxyla 73.9 7.3 0.00016 34.4 5.4 35 87-121 1-36 (266)
124 PF02254 TrkA_N: TrkA-N domain 73.8 5.9 0.00013 30.3 4.2 29 89-120 1-29 (116)
125 PRK07417 arogenate dehydrogena 73.8 4.5 9.6E-05 36.6 4.0 30 87-119 1-30 (279)
126 KOG0068 D-3-phosphoglycerate d 73.1 2.3 5.1E-05 41.5 2.1 20 88-107 148-167 (406)
127 PRK08507 prephenate dehydrogen 72.7 5.7 0.00012 35.7 4.4 31 88-119 2-32 (275)
128 COG0287 TyrA Prephenate dehydr 72.5 5.8 0.00012 36.9 4.5 34 86-120 3-36 (279)
129 TIGR00936 ahcY adenosylhomocys 72.2 5.1 0.00011 39.3 4.3 29 87-118 196-224 (406)
130 cd08281 liver_ADH_like1 Zinc-d 71.7 13 0.00028 34.4 6.7 98 87-210 193-293 (371)
131 PRK06476 pyrroline-5-carboxyla 71.0 6.2 0.00014 35.0 4.3 33 88-121 2-34 (258)
132 PLN02586 probable cinnamyl alc 71.0 16 0.00035 33.9 7.1 94 88-209 186-280 (360)
133 PF10727 Rossmann-like: Rossma 70.0 4.8 0.0001 33.2 3.1 44 85-131 9-54 (127)
134 cd08239 THR_DH_like L-threonin 70.0 20 0.00043 32.3 7.3 97 87-209 165-264 (339)
135 PRK01438 murD UDP-N-acetylmura 69.5 22 0.00047 34.4 7.9 30 87-119 17-46 (480)
136 PRK09599 6-phosphogluconate de 69.0 7 0.00015 35.7 4.2 30 88-120 2-31 (301)
137 PRK08306 dipicolinate synthase 68.7 7.6 0.00017 35.9 4.4 33 86-121 152-184 (296)
138 PRK14619 NAD(P)H-dependent gly 68.4 7.8 0.00017 35.5 4.4 32 86-120 4-35 (308)
139 PRK12491 pyrroline-5-carboxyla 66.4 11 0.00025 34.3 5.1 45 86-132 2-47 (272)
140 COG4569 MhpF Acetaldehyde dehy 66.3 18 0.00039 33.6 6.2 124 85-238 3-131 (310)
141 PLN02819 lysine-ketoglutarate 66.1 15 0.00033 40.3 6.6 95 86-202 569-674 (1042)
142 PRK12490 6-phosphogluconate de 65.6 9 0.0002 35.0 4.2 30 88-120 2-31 (299)
143 PRK05476 S-adenosyl-L-homocyst 65.4 11 0.00024 37.2 5.1 30 87-119 213-242 (425)
144 PRK09496 trkA potassium transp 65.4 8.2 0.00018 36.6 4.1 30 87-119 1-30 (453)
145 PRK09466 metL bifunctional asp 65.4 7.4 0.00016 41.3 4.1 37 85-121 457-500 (810)
146 TIGR01505 tartro_sem_red 2-hyd 65.4 7.5 0.00016 35.1 3.6 29 88-119 1-29 (291)
147 TIGR03736 PRTRC_ThiF PRTRC sys 65.2 12 0.00025 34.3 4.9 102 85-195 10-125 (244)
148 PTZ00117 malate dehydrogenase; 65.2 15 0.00033 34.3 5.7 23 86-108 5-27 (319)
149 PRK03562 glutathione-regulated 65.0 6.2 0.00013 40.3 3.3 29 87-118 401-429 (621)
150 TIGR00872 gnd_rel 6-phosphoglu 65.0 9.3 0.0002 35.0 4.2 30 88-120 2-31 (298)
151 cd05283 CAD1 Cinnamyl alcohol 64.2 40 0.00086 30.4 8.1 95 87-209 171-265 (337)
152 PRK07502 cyclohexadienyl dehyd 64.1 11 0.00024 34.3 4.6 32 87-119 7-38 (307)
153 KOG1502 Flavonol reductase/cin 63.8 16 0.00036 35.0 5.7 46 87-134 7-53 (327)
154 PRK09436 thrA bifunctional asp 63.5 5.7 0.00012 42.0 2.8 37 85-121 464-506 (819)
155 PRK09424 pntA NAD(P) transhydr 63.4 9.3 0.0002 38.6 4.2 24 85-108 164-187 (509)
156 PTZ00079 NADP-specific glutama 63.3 13 0.00028 37.2 5.1 68 55-134 215-291 (454)
157 PTZ00082 L-lactate dehydrogena 62.8 17 0.00036 34.2 5.5 21 87-107 7-27 (321)
158 PF00208 ELFV_dehydrog: Glutam 62.6 11 0.00024 34.2 4.1 31 87-120 33-63 (244)
159 cd08242 MDR_like Medium chain 62.2 50 0.0011 29.3 8.2 88 87-206 157-244 (319)
160 PLN02740 Alcohol dehydrogenase 62.0 25 0.00055 32.7 6.6 102 87-210 200-303 (381)
161 cd08277 liver_alcohol_DH_like 61.3 33 0.00072 31.6 7.2 97 87-209 186-288 (365)
162 TIGR03201 dearomat_had 6-hydro 60.1 36 0.00078 31.1 7.1 101 87-210 168-275 (349)
163 cd08255 2-desacetyl-2-hydroxye 59.9 41 0.00089 29.1 7.1 92 87-208 99-191 (277)
164 PRK03659 glutathione-regulated 59.5 9.2 0.0002 38.8 3.4 31 86-119 400-430 (601)
165 PRK02006 murD UDP-N-acetylmura 59.3 40 0.00086 33.0 7.7 30 88-121 9-38 (498)
166 COG0345 ProC Pyrroline-5-carbo 59.0 18 0.00039 33.6 5.0 34 87-120 2-36 (266)
167 TIGR02130 dapB_plant dihydrodi 59.0 12 0.00026 35.1 3.8 29 87-118 1-30 (275)
168 PRK14031 glutamate dehydrogena 58.5 17 0.00036 36.2 5.0 66 56-133 207-281 (444)
169 PRK07679 pyrroline-5-carboxyla 58.4 16 0.00035 32.9 4.5 34 87-120 4-38 (279)
170 cd05213 NAD_bind_Glutamyl_tRNA 57.7 13 0.00028 34.5 3.8 33 86-120 178-210 (311)
171 PRK02472 murD UDP-N-acetylmura 57.4 43 0.00094 31.8 7.4 30 88-121 7-36 (447)
172 PRK10669 putative cation:proto 57.0 11 0.00024 37.5 3.5 31 86-119 417-447 (558)
173 PRK05479 ketol-acid reductoiso 56.6 15 0.00033 35.1 4.2 32 87-121 18-49 (330)
174 cd08301 alcohol_DH_plants Plan 56.5 60 0.0013 29.8 8.0 101 87-209 189-291 (369)
175 PF03721 UDPG_MGDP_dh_N: UDP-g 56.1 18 0.00038 31.3 4.2 29 87-118 1-29 (185)
176 cd08269 Zn_ADH9 Alcohol dehydr 55.7 44 0.00096 29.1 6.7 94 87-208 131-230 (312)
177 TIGR00465 ilvC ketol-acid redu 55.5 16 0.00035 34.3 4.1 32 87-121 4-35 (314)
178 cd08294 leukotriene_B4_DH_like 55.3 53 0.0011 29.0 7.2 95 87-207 145-241 (329)
179 PLN02178 cinnamyl-alcohol dehy 55.2 35 0.00076 32.1 6.3 97 87-210 180-276 (375)
180 cd05280 MDR_yhdh_yhfp Yhdh and 54.8 52 0.0011 28.9 7.0 95 88-208 149-244 (325)
181 PRK15116 sulfur acceptor prote 54.6 7.2 0.00016 36.1 1.6 106 86-198 30-143 (268)
182 PRK15059 tartronate semialdehy 54.4 18 0.00039 33.3 4.1 29 88-119 2-30 (292)
183 TIGR00518 alaDH alanine dehydr 53.9 19 0.00041 34.4 4.4 31 86-119 167-197 (370)
184 PRK07680 late competence prote 53.9 28 0.0006 31.2 5.2 21 88-108 2-22 (273)
185 cd00401 AdoHcyase S-adenosyl-L 53.7 19 0.0004 35.5 4.3 29 87-118 203-231 (413)
186 TIGR03451 mycoS_dep_FDH mycoth 53.6 47 0.001 30.4 6.8 97 87-209 178-278 (358)
187 PF00107 ADH_zinc_N: Zinc-bind 53.4 5 0.00011 31.0 0.3 36 175-210 57-92 (130)
188 PRK06928 pyrroline-5-carboxyla 53.4 22 0.00048 32.2 4.5 35 87-121 2-37 (277)
189 PRK06545 prephenate dehydrogen 53.3 19 0.00042 33.9 4.3 31 88-119 2-32 (359)
190 PLN02514 cinnamyl-alcohol dehy 53.1 48 0.001 30.6 6.8 97 87-210 182-278 (357)
191 PRK08644 thiamine biosynthesis 52.9 6.1 0.00013 34.8 0.8 103 85-197 27-138 (212)
192 TIGR02818 adh_III_F_hyde S-(hy 52.7 42 0.0009 31.1 6.3 100 87-210 187-290 (368)
193 PLN03154 putative allyl alcoho 52.5 65 0.0014 29.7 7.6 98 87-210 160-261 (348)
194 PLN02827 Alcohol dehydrogenase 52.3 62 0.0013 30.3 7.5 22 87-108 195-216 (378)
195 PF00899 ThiF: ThiF family; I 52.3 1.5 3.2E-05 35.3 -3.0 105 87-198 3-114 (135)
196 cd08300 alcohol_DH_class_III c 52.1 62 0.0013 29.9 7.4 29 87-118 188-217 (368)
197 PRK12771 putative glutamate sy 52.0 5 0.00011 39.9 0.1 30 87-119 138-167 (564)
198 PRK12475 thiamine/molybdopteri 51.6 8.3 0.00018 36.5 1.6 115 86-205 24-146 (338)
199 TIGR03026 NDP-sugDHase nucleot 51.5 20 0.00044 34.2 4.2 30 87-119 1-30 (411)
200 PLN02545 3-hydroxybutyryl-CoA 51.1 24 0.00052 31.9 4.4 31 87-120 5-35 (295)
201 PRK00421 murC UDP-N-acetylmura 51.0 54 0.0012 31.7 7.0 31 87-121 8-39 (461)
202 PF02737 3HCDH_N: 3-hydroxyacy 51.0 26 0.00057 29.9 4.4 28 88-118 1-28 (180)
203 PTZ00431 pyrroline carboxylate 50.2 28 0.0006 31.2 4.6 22 87-108 4-25 (260)
204 PF06115 DUF956: Domain of unk 50.0 13 0.00028 31.0 2.2 31 149-181 24-57 (118)
205 PRK15461 NADH-dependent gamma- 50.0 23 0.00049 32.4 4.1 30 88-120 3-32 (296)
206 PRK11863 N-acetyl-gamma-glutam 48.7 28 0.00061 33.0 4.6 33 85-119 1-34 (313)
207 PRK00094 gpsA NAD(P)H-dependen 48.6 28 0.0006 31.4 4.4 30 87-119 2-31 (325)
208 cd00757 ThiF_MoeB_HesA_family 48.4 8.4 0.00018 33.9 1.0 103 86-195 21-130 (228)
209 PRK11199 tyrA bifunctional cho 48.1 24 0.00051 33.7 4.0 23 86-108 98-121 (374)
210 PRK10309 galactitol-1-phosphat 47.4 93 0.002 28.2 7.6 22 87-108 162-183 (347)
211 PRK09496 trkA potassium transp 47.3 27 0.00059 33.1 4.3 30 86-118 231-260 (453)
212 TIGR01087 murD UDP-N-acetylmur 46.9 74 0.0016 30.2 7.2 30 88-121 1-30 (433)
213 COG0771 MurD UDP-N-acetylmuram 46.8 91 0.002 31.2 8.0 87 86-202 7-95 (448)
214 PRK08818 prephenate dehydrogen 46.6 30 0.00064 33.5 4.5 31 86-118 4-35 (370)
215 cd08245 CAD Cinnamyl alcohol d 46.4 1.2E+02 0.0027 26.8 8.1 95 87-209 164-258 (330)
216 PRK06035 3-hydroxyacyl-CoA deh 46.3 31 0.00068 31.2 4.4 30 87-119 4-33 (291)
217 cd08233 butanediol_DH_like (2R 46.2 66 0.0014 29.1 6.4 98 87-209 174-274 (351)
218 COG2910 Putative NADH-flavin r 46.1 78 0.0017 28.8 6.7 30 87-119 1-31 (211)
219 PF00670 AdoHcyase_NAD: S-aden 46.0 22 0.00049 30.8 3.2 21 88-108 25-45 (162)
220 cd01336 MDH_cytoplasmic_cytoso 45.9 26 0.00057 32.9 3.9 24 85-108 1-25 (325)
221 cd08231 MDR_TM0436_like Hypoth 45.9 1E+02 0.0022 28.1 7.6 29 87-118 179-208 (361)
222 cd08289 MDR_yhfp_like Yhfp put 45.8 55 0.0012 28.8 5.8 96 87-209 148-245 (326)
223 PF01262 AlaDh_PNT_C: Alanine 45.7 39 0.00085 28.2 4.6 33 85-120 19-51 (168)
224 TIGR01035 hemA glutamyl-tRNA r 45.6 31 0.00066 33.5 4.4 33 87-121 181-213 (417)
225 TIGR02354 thiF_fam2 thiamine b 45.6 8.3 0.00018 33.8 0.5 104 86-194 21-128 (200)
226 PRK04690 murD UDP-N-acetylmura 45.5 95 0.0021 30.4 7.8 31 87-121 9-39 (468)
227 cd05191 NAD_bind_amino_acid_DH 45.5 37 0.0008 25.2 4.0 22 87-108 24-45 (86)
228 PRK04308 murD UDP-N-acetylmura 45.5 1.2E+02 0.0027 29.0 8.5 31 87-121 6-36 (445)
229 PRK06249 2-dehydropantoate 2-r 45.1 34 0.00075 31.3 4.5 33 85-118 4-36 (313)
230 PRK14618 NAD(P)H-dependent gly 45.0 34 0.00074 31.4 4.4 31 87-120 5-35 (328)
231 cd08262 Zn_ADH8 Alcohol dehydr 45.0 1.3E+02 0.0028 26.9 8.1 102 87-207 163-264 (341)
232 cd08270 MDR4 Medium chain dehy 44.5 1.2E+02 0.0027 26.2 7.7 90 87-209 134-224 (305)
233 cd08284 FDH_like_2 Glutathione 44.2 92 0.002 27.8 7.0 96 87-206 169-265 (344)
234 PRK07877 hypothetical protein; 43.9 10 0.00022 39.9 0.9 101 85-194 106-214 (722)
235 PRK09260 3-hydroxybutyryl-CoA 43.8 33 0.00072 31.0 4.1 28 88-118 3-30 (288)
236 cd08235 iditol_2_DH_like L-idi 43.7 1E+02 0.0022 27.5 7.2 100 87-209 167-267 (343)
237 cd05188 MDR Medium chain reduc 43.5 1.1E+02 0.0024 25.6 7.0 99 87-209 136-234 (271)
238 cd05279 Zn_ADH1 Liver alcohol 43.3 69 0.0015 29.5 6.2 22 87-108 185-206 (365)
239 cd08295 double_bond_reductase_ 43.0 99 0.0021 27.9 7.1 99 87-208 153-252 (338)
240 PRK00683 murD UDP-N-acetylmura 42.9 31 0.00068 32.9 4.0 29 88-119 5-33 (418)
241 TIGR02356 adenyl_thiF thiazole 42.7 7.7 0.00017 33.7 -0.2 104 87-196 22-131 (202)
242 PRK06522 2-dehydropantoate 2-r 42.7 38 0.00081 30.1 4.2 21 87-107 1-21 (304)
243 cd08232 idonate-5-DH L-idonate 42.7 1.5E+02 0.0033 26.4 8.2 95 87-207 167-262 (339)
244 TIGR01851 argC_other N-acetyl- 41.9 68 0.0015 30.6 6.0 32 88-121 3-35 (310)
245 PRK08655 prephenate dehydrogen 41.9 36 0.00079 33.3 4.3 30 87-119 1-31 (437)
246 PLN03209 translocon at the inn 41.7 1.1E+02 0.0023 31.8 7.7 28 88-118 82-110 (576)
247 TIGR01915 npdG NADPH-dependent 41.4 45 0.00097 29.0 4.4 29 87-118 1-30 (219)
248 PRK00045 hemA glutamyl-tRNA re 41.4 37 0.00081 32.8 4.3 32 87-121 183-215 (423)
249 cd05288 PGDH Prostaglandin deh 41.2 1.1E+02 0.0025 26.9 7.1 97 87-207 147-244 (329)
250 cd01065 NAD_bind_Shikimate_DH 41.2 40 0.00087 26.8 3.8 22 87-108 20-41 (155)
251 cd08260 Zn_ADH6 Alcohol dehydr 41.0 84 0.0018 28.2 6.3 97 87-210 167-267 (345)
252 cd08278 benzyl_alcohol_DH Benz 40.9 1.1E+02 0.0023 28.3 7.1 99 87-209 188-287 (365)
253 PRK02318 mannitol-1-phosphate 40.7 30 0.00064 33.0 3.5 31 87-119 1-31 (381)
254 PRK06129 3-hydroxyacyl-CoA deh 40.7 40 0.00086 30.9 4.2 31 87-120 3-33 (308)
255 cd08238 sorbose_phosphate_red 40.6 1.7E+02 0.0036 27.7 8.4 34 175-208 256-289 (410)
256 PRK14106 murD UDP-N-acetylmura 40.6 1.3E+02 0.0028 28.7 7.7 31 87-121 6-36 (450)
257 TIGR02819 fdhA_non_GSH formald 40.6 1.2E+02 0.0025 28.9 7.4 32 87-121 187-218 (393)
258 PRK06130 3-hydroxybutyryl-CoA 40.5 44 0.00095 30.3 4.4 30 87-119 5-34 (311)
259 PLN02968 Probable N-acetyl-gam 40.2 41 0.00089 32.6 4.3 33 85-119 37-70 (381)
260 TIGR00873 gnd 6-phosphoglucona 39.9 30 0.00066 34.3 3.5 31 88-121 1-31 (467)
261 cd08246 crotonyl_coA_red croto 39.9 2.4E+02 0.0052 26.1 9.2 32 176-208 285-316 (393)
262 COG2085 Predicted dinucleotide 39.4 51 0.0011 29.9 4.5 31 87-120 2-32 (211)
263 PF01232 Mannitol_dh: Mannitol 38.9 45 0.00097 27.7 3.9 47 87-134 1-50 (151)
264 COG1023 Gnd Predicted 6-phosph 38.8 31 0.00067 32.7 3.1 43 87-134 1-43 (300)
265 cd08285 NADP_ADH NADP(H)-depen 38.3 1.5E+02 0.0033 26.7 7.6 34 175-208 234-267 (351)
266 PRK05808 3-hydroxybutyryl-CoA 38.1 46 0.001 29.9 4.1 29 88-119 5-33 (282)
267 PF02629 CoA_binding: CoA bind 38.1 45 0.00096 25.4 3.5 92 86-210 3-96 (96)
268 PF01488 Shikimate_DH: Shikima 38.0 52 0.0011 26.6 4.0 41 87-129 13-54 (135)
269 PTZ00142 6-phosphogluconate de 37.6 39 0.00084 33.7 3.8 30 88-120 3-32 (470)
270 COG0039 Mdh Malate/lactate deh 37.4 55 0.0012 31.3 4.6 34 87-120 1-35 (313)
271 cd08296 CAD_like Cinnamyl alco 37.4 1E+02 0.0022 27.8 6.2 94 88-209 166-261 (333)
272 cd05293 LDH_1 A subgroup of L- 37.2 37 0.00081 31.8 3.5 22 87-108 4-25 (312)
273 cd08290 ETR 2-enoyl thioester 37.0 1.9E+02 0.0041 25.8 7.8 32 87-121 148-180 (341)
274 COG1064 AdhP Zn-dependent alco 36.6 1.7E+02 0.0038 28.2 7.9 94 87-210 168-262 (339)
275 cd08293 PTGR2 Prostaglandin re 36.4 67 0.0014 28.8 4.9 97 87-207 156-254 (345)
276 TIGR02825 B4_12hDH leukotriene 36.3 1.6E+02 0.0034 26.3 7.3 98 87-208 140-238 (325)
277 KOG0024 Sorbitol dehydrogenase 36.1 37 0.0008 33.1 3.3 95 85-206 169-271 (354)
278 cd08248 RTN4I1 Human Reticulon 36.1 1.5E+02 0.0033 26.4 7.1 94 87-208 164-258 (350)
279 PRK05690 molybdopterin biosynt 35.8 18 0.0004 32.5 1.1 98 86-191 32-137 (245)
280 cd08236 sugar_DH NAD(P)-depend 35.7 1.9E+02 0.0041 25.9 7.7 95 87-209 161-260 (343)
281 PLN02702 L-idonate 5-dehydroge 35.7 1.5E+02 0.0032 27.2 7.1 32 176-207 254-285 (364)
282 cd08267 MDR1 Medium chain dehy 35.6 2.3E+02 0.0051 24.4 8.0 31 87-120 145-176 (319)
283 TIGR01761 thiaz-red thiazoliny 35.5 52 0.0011 31.5 4.2 35 85-121 2-36 (343)
284 PRK12921 2-dehydropantoate 2-r 35.0 60 0.0013 29.0 4.3 21 87-107 1-21 (305)
285 PRK05600 thiamine biosynthesis 34.8 7.9 0.00017 37.2 -1.5 103 86-194 41-149 (370)
286 TIGR02355 moeB molybdopterin s 34.7 16 0.00034 32.9 0.5 105 86-195 24-133 (240)
287 PF00070 Pyr_redox: Pyridine n 34.0 87 0.0019 22.6 4.3 33 88-121 1-33 (80)
288 PRK07530 3-hydroxybutyryl-CoA 33.4 67 0.0014 29.0 4.4 30 87-119 5-34 (292)
289 PRK15057 UDP-glucose 6-dehydro 33.3 54 0.0012 31.6 4.0 29 87-119 1-29 (388)
290 PLN02696 1-deoxy-D-xylulose-5- 33.3 76 0.0016 31.9 5.1 43 86-129 57-100 (454)
291 PTZ00090 40S ribosomal protein 33.3 98 0.0021 28.6 5.3 33 85-122 182-215 (233)
292 PF00056 Ldh_1_N: lactate/mala 33.3 61 0.0013 26.6 3.8 22 87-108 1-23 (141)
293 PF03858 Crust_neuro_H: Crusta 33.2 22 0.00047 24.6 0.9 13 92-104 4-16 (41)
294 PLN02662 cinnamyl-alcohol dehy 33.1 87 0.0019 27.7 5.0 28 88-118 6-34 (322)
295 PRK07531 bifunctional 3-hydrox 32.9 64 0.0014 32.0 4.5 30 87-119 5-34 (495)
296 TIGR03632 bact_S11 30S ribosom 32.7 1.2E+02 0.0026 24.3 5.3 35 85-122 62-96 (108)
297 PLN02350 phosphogluconate dehy 32.4 47 0.001 33.4 3.5 133 87-229 7-157 (493)
298 PRK14806 bifunctional cyclohex 32.3 61 0.0013 33.3 4.4 32 87-119 4-35 (735)
299 PRK11064 wecC UDP-N-acetyl-D-m 32.2 64 0.0014 31.2 4.3 30 87-119 4-33 (415)
300 PRK15182 Vi polysaccharide bio 32.1 60 0.0013 31.7 4.1 31 86-120 6-36 (425)
301 PF13460 NAD_binding_10: NADH( 32.0 80 0.0017 25.5 4.3 30 89-121 1-31 (183)
302 PLN00141 Tic62-NAD(P)-related 31.4 98 0.0021 26.8 5.0 30 86-118 17-47 (251)
303 PF02558 ApbA: Ketopantoate re 31.2 78 0.0017 25.2 4.0 19 89-107 1-19 (151)
304 PRK03369 murD UDP-N-acetylmura 30.5 69 0.0015 31.5 4.3 31 87-121 13-43 (488)
305 KOG2380 Prephenate dehydrogena 30.2 47 0.001 33.0 3.0 23 85-107 51-73 (480)
306 TIGR00507 aroE shikimate 5-deh 30.0 1.7E+02 0.0037 26.2 6.4 32 87-121 118-149 (270)
307 PRK05309 30S ribosomal protein 30.0 1.4E+02 0.0029 24.9 5.3 35 85-122 79-113 (128)
308 cd08265 Zn_ADH3 Alcohol dehydr 29.8 2.6E+02 0.0056 26.0 7.7 35 175-209 274-309 (384)
309 PF07482 DUF1522: Domain of Un 29.8 90 0.002 25.7 4.1 57 151-208 2-70 (109)
310 PRK10537 voltage-gated potassi 29.7 73 0.0016 31.0 4.2 30 87-119 241-270 (393)
311 cd08263 Zn_ADH10 Alcohol dehyd 29.7 2.5E+02 0.0054 25.7 7.5 93 88-208 190-288 (367)
312 PRK03815 murD UDP-N-acetylmura 29.3 65 0.0014 31.1 3.8 20 87-106 1-20 (401)
313 COG1748 LYS9 Saccharopine dehy 29.0 68 0.0015 31.5 3.9 96 87-207 2-99 (389)
314 PRK07819 3-hydroxybutyryl-CoA 28.9 87 0.0019 28.7 4.4 29 88-119 7-35 (286)
315 cd01486 Apg7 Apg7 is an E1-lik 28.8 15 0.00033 35.0 -0.6 31 88-121 1-31 (307)
316 KOG3870 Uncharacterized conser 28.8 56 0.0012 32.6 3.2 50 175-228 239-291 (434)
317 PRK14851 hypothetical protein; 28.7 21 0.00045 37.4 0.3 98 86-188 43-145 (679)
318 PRK05225 ketol-acid reductoiso 28.3 54 0.0012 33.3 3.1 27 87-116 37-63 (487)
319 TIGR01381 E1_like_apg7 E1-like 28.2 24 0.00053 37.0 0.7 119 85-208 337-479 (664)
320 PRK10083 putative oxidoreducta 28.1 1.8E+02 0.0039 26.0 6.2 100 87-209 162-261 (339)
321 cd01487 E1_ThiF_like E1_ThiF_l 28.1 26 0.00056 29.8 0.7 20 88-107 1-20 (174)
322 cd08287 FDH_like_ADH3 formalde 28.0 2.4E+02 0.0052 25.2 7.0 36 175-210 236-271 (345)
323 PRK00141 murD UDP-N-acetylmura 27.9 85 0.0018 30.7 4.3 31 87-121 16-46 (473)
324 PRK01710 murD UDP-N-acetylmura 27.6 82 0.0018 30.5 4.2 21 88-108 16-36 (458)
325 CHL00194 ycf39 Ycf39; Provisio 27.4 93 0.002 28.1 4.3 29 88-119 2-31 (317)
326 PLN02427 UDP-apiose/xylose syn 27.4 1.2E+02 0.0025 28.3 5.0 34 85-120 13-47 (386)
327 PRK08223 hypothetical protein; 27.3 31 0.00068 32.4 1.2 97 86-187 27-128 (287)
328 cd05294 LDH-like_MDH_nadp A la 27.2 72 0.0016 29.6 3.6 22 87-108 1-23 (309)
329 PF12338 RbcS: Ribulose-1,5-bi 26.9 34 0.00075 24.1 1.0 19 36-54 23-41 (45)
330 COG0334 GdhA Glutamate dehydro 26.8 97 0.0021 30.9 4.5 33 86-121 207-239 (411)
331 COG0686 Ald Alanine dehydrogen 26.4 74 0.0016 31.2 3.5 98 85-189 167-277 (371)
332 TIGR01751 crot-CoA-red crotony 26.3 3.8E+02 0.0082 25.0 8.3 29 87-118 191-220 (398)
333 PRK06988 putative formyltransf 26.2 87 0.0019 29.3 3.9 23 86-108 2-24 (312)
334 PRK04663 murD UDP-N-acetylmura 26.1 3.6E+02 0.0079 25.9 8.2 33 87-121 8-40 (438)
335 PLN02602 lactate dehydrogenase 25.8 95 0.0021 29.8 4.2 34 87-120 38-72 (350)
336 cd05291 HicDH_like L-2-hydroxy 25.6 98 0.0021 28.5 4.1 21 88-108 2-22 (306)
337 PRK14573 bifunctional D-alanyl 25.4 2.2E+02 0.0048 29.9 7.1 30 88-121 6-36 (809)
338 cd05281 TDH Threonine dehydrog 25.4 2.2E+02 0.0047 25.6 6.3 29 87-118 165-194 (341)
339 PRK07411 hypothetical protein; 25.1 18 0.00038 34.9 -0.9 101 86-193 38-145 (390)
340 PRK05597 molybdopterin biosynt 25.0 31 0.00066 32.8 0.7 101 86-193 28-135 (355)
341 KOG0455 Homoserine dehydrogena 24.9 78 0.0017 30.3 3.3 37 85-121 2-44 (364)
342 PTZ00357 methyltransferase; Pr 24.7 3E+02 0.0064 30.1 7.7 36 85-121 700-737 (1072)
343 PRK08293 3-hydroxybutyryl-CoA 24.7 93 0.002 28.1 3.8 21 87-107 4-24 (287)
344 cd05278 FDH_like Formaldehyde 24.7 2.7E+02 0.0059 24.8 6.7 29 87-118 169-198 (347)
345 CHL00041 rps11 ribosomal prote 24.7 1.9E+02 0.0042 23.5 5.2 35 85-122 75-109 (116)
346 PRK01220 malonate decarboxylas 24.6 97 0.0021 25.1 3.4 34 87-121 44-78 (99)
347 cd08258 Zn_ADH4 Alcohol dehydr 24.4 3.3E+02 0.0071 24.3 7.2 101 88-210 167-267 (306)
348 cd05290 LDH_3 A subgroup of L- 23.7 99 0.0021 28.9 3.8 21 88-108 1-21 (307)
349 TIGR02649 true_RNase_BN ribonu 23.7 2.3E+02 0.0051 25.7 6.2 56 155-210 201-270 (303)
350 PRK02705 murD UDP-N-acetylmura 23.7 1.1E+02 0.0023 29.3 4.1 30 88-121 2-31 (459)
351 PRK02103 malonate decarboxylas 23.6 1E+02 0.0022 25.2 3.4 34 87-121 48-82 (105)
352 TIGR03130 malonate_delta malon 23.6 1.1E+02 0.0023 24.8 3.5 34 87-121 46-80 (98)
353 PRK05708 2-dehydropantoate 2-r 23.5 1.3E+02 0.0027 27.7 4.4 30 86-116 2-31 (305)
354 PRK00066 ldh L-lactate dehydro 23.4 1E+02 0.0023 28.8 3.9 23 86-108 6-28 (315)
355 PF00977 His_biosynth: Histidi 22.8 57 0.0012 28.9 1.9 41 171-211 90-131 (229)
356 PF05368 NmrA: NmrA-like famil 22.7 1.3E+02 0.0029 25.5 4.2 94 89-208 1-102 (233)
357 TIGR00561 pntA NAD(P) transhyd 22.6 1E+02 0.0022 31.3 3.9 23 86-108 164-186 (511)
358 KOG1399 Flavin-containing mono 22.6 82 0.0018 31.3 3.2 24 85-108 5-28 (448)
359 COG0002 ArgC Acetylglutamate s 22.5 1.2E+02 0.0027 29.5 4.2 33 85-119 1-34 (349)
360 PF04321 RmlD_sub_bind: RmlD s 22.5 1.9E+02 0.0042 26.1 5.4 42 87-131 1-47 (286)
361 PLN02986 cinnamyl-alcohol dehy 22.5 1.7E+02 0.0037 26.2 5.0 42 88-132 7-50 (322)
362 PLN00106 malate dehydrogenase 22.5 1.2E+02 0.0026 28.7 4.2 34 87-120 19-54 (323)
363 cd01338 MDH_choloroplast_like 22.5 2.1E+02 0.0046 26.9 5.8 22 86-107 2-24 (322)
364 PRK04148 hypothetical protein; 22.4 1.6E+02 0.0034 24.8 4.4 43 59-118 3-45 (134)
365 PRK06046 alanine dehydrogenase 22.4 1.4E+02 0.0031 27.8 4.6 34 86-121 129-162 (326)
366 PRK00258 aroE shikimate 5-dehy 22.3 1.2E+02 0.0026 27.5 4.0 33 87-121 124-156 (278)
367 cd05292 LDH_2 A subgroup of L- 22.1 1.2E+02 0.0027 28.0 4.1 22 87-108 1-22 (308)
368 TIGR01019 sucCoAalpha succinyl 21.9 3E+02 0.0064 25.8 6.5 31 87-119 7-38 (286)
369 cd08234 threonine_DH_like L-th 21.9 5.6E+02 0.012 22.6 8.8 96 87-207 161-257 (334)
370 PRK08017 oxidoreductase; Provi 21.6 1.5E+02 0.0033 25.1 4.3 28 88-118 4-32 (256)
371 TIGR03855 NAD_NadX aspartate d 21.6 69 0.0015 28.9 2.3 33 176-209 37-69 (229)
372 KOG0022 Alcohol dehydrogenase, 21.4 2.8E+02 0.006 27.4 6.3 38 173-210 259-297 (375)
373 PRK03803 murD UDP-N-acetylmura 21.2 1.6E+02 0.0034 28.3 4.7 30 88-121 8-37 (448)
374 cd01485 E1-1_like Ubiquitin ac 21.0 40 0.00087 29.3 0.6 105 86-195 19-132 (198)
375 COG1179 Dinucleotide-utilizing 20.9 88 0.0019 29.4 2.8 126 87-218 31-163 (263)
376 PRK06223 malate dehydrogenase; 20.5 1.4E+02 0.0031 27.1 4.1 21 87-107 3-23 (307)
377 PRK07066 3-hydroxybutyryl-CoA 20.3 1.6E+02 0.0034 28.0 4.4 29 87-118 8-36 (321)
378 PLN00203 glutamyl-tRNA reducta 20.3 1.1E+02 0.0024 31.0 3.6 32 87-121 267-299 (519)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=1.7e-66 Score=498.01 Aligned_cols=231 Identities=85% Similarity=1.273 Sum_probs=210.3
Q ss_pred ccCCCCCCCCCCccccCCCCcCCCCCcccccccccccccCcccccccccccccCCcCHHHHHHhhccccccCCCCCcccc
Q 025797 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (248)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
+|||||++|||+++|+||+++| ++.+|++|+|||++++++|.....+.+|.+.++.++..+.. .....+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKASH--------KRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVA-GSTPVRGE 71 (442)
T ss_pred CcchhcccCCcccccccccccc--------ccccccccccccccccccccccccchhHHHHhhhhhhhhhc-cccccccc
Confidence 6999999999999999999862 66789999999999999998777788999999999987633 34566677
Q ss_pred ccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 83 ~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~ 162 (248)
+.|++||||||||||||+++|+++++.+++++||+|||..++++++|||||||+||+|+++|++.+++.|.+||++|+|+
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 88999999999999999999999875445799999999999999999999999999999999864678999999999999
Q ss_pred ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--C
Q 025797 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--K 240 (248)
Q Consensus 163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~ 240 (248)
+++||+++||+++|+||||||||.|++++.+..||++|||||+||||.++.|+|||||||||+.|++..++|||||| +
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT 231 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT 231 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence 99999999999999999999999999999999999999999999999987568999999999999864368999999 8
Q ss_pred cc
Q 025797 241 NW 242 (248)
Q Consensus 241 ~~ 242 (248)
||
T Consensus 232 Nc 233 (442)
T PLN02237 232 NC 233 (442)
T ss_pred HH
Confidence 87
No 2
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.8e-58 Score=429.09 Aligned_cols=157 Identities=40% Similarity=0.666 Sum_probs=145.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC--CCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEe-------cCCcEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETISV 154 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~--~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~-------e~~~L~i 154 (248)
|++||||||||||||+++|+++++. ..++++|+|||+ .++++++|||||||+||+|+++|+++ +++.|+|
T Consensus 2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~i 81 (361)
T PTZ00434 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVV 81 (361)
T ss_pred CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEE
Confidence 6689999999999999999988752 357999999995 89999999999999999999999972 5788999
Q ss_pred CCeEEEEE-ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCe
Q 025797 155 DGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVAN 233 (248)
Q Consensus 155 nGk~I~v~-~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~ 233 (248)
||++|+++ +++||++|||+++|+||||||||+|++++++++||++||||||||||+|+ +.|||||||||++|+++.++
T Consensus 82 ng~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~~ 160 (361)
T PTZ00434 82 NGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEHH 160 (361)
T ss_pred CCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccCc
Confidence 99999996 99999999999999999999999999999999999999999999999986 46899999999999983278
Q ss_pred EEeecC--Ccc
Q 025797 234 IVRSWM--KNW 242 (248)
Q Consensus 234 IISnAS--~~~ 242 (248)
|||||| +||
T Consensus 161 IiSnASCTTNc 171 (361)
T PTZ00434 161 VVSNASCTTNC 171 (361)
T ss_pred EEECCChHHHh
Confidence 999999 899
No 3
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=2.7e-57 Score=381.33 Aligned_cols=149 Identities=49% Similarity=0.811 Sum_probs=138.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC-ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~-~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
+||||||||||||+++|+++.+ +++++|+|||+. ++++++|||||||+||+|+++|++ +++.|++||++|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence 6999999999999999999954 579999999996 999999999999999999999998 577899999999999999
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM 239 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS 239 (248)
||+++||+++|+||||||||.|++++.++.||++||||||+|||+|+..+|||||||||++|+++ ++||||||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS~aS 150 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIISNAS 150 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEEE--
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEEccC
Confidence 99999999999999999999999999999999999999999999997438999999999999998 69999998
No 4
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.1e-55 Score=419.47 Aligned_cols=203 Identities=64% Similarity=1.018 Sum_probs=180.9
Q ss_pred cccccccCcccccccccccccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeE
Q 025797 35 LDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 114 (248)
Q Consensus 35 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~ 114 (248)
.+|++|+|||++++++|+......+| +.+++... ..........+.|++||+|||||||||+++|+++++..+.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~e 88 (395)
T PLN03096 13 KGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPLD 88 (395)
T ss_pred CcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCCeE
Confidence 48999999999888888655555555 77777654 222345566777989999999999999999999886546799
Q ss_pred EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCCCCCCCCCCcccEEecCcccccCchhhh
Q 025797 115 VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (248)
Q Consensus 115 iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~ 194 (248)
+|+|||..++++++|||+|||+||+|+++|+..+++.|++||++|+|++++||+++||+++|+||||||||.|++++.++
T Consensus 89 vvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~ 168 (395)
T PLN03096 89 VVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAG 168 (395)
T ss_pred EEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHHH
Confidence 99999999999999999999999999999986567889999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cccc
Q 025797 195 KHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNWG 243 (248)
Q Consensus 195 ~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~~ 243 (248)
+||++|||||+||||.++ |+|||||||||+.|++. ++|||||| +||=
T Consensus 169 ~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IISnaSCTTn~L 217 (395)
T PLN03096 169 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIISNASCTTNCL 217 (395)
T ss_pred HHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEECCchHHHHH
Confidence 999999999999999886 78999999999999987 89999999 8883
No 5
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=8.5e-56 Score=426.42 Aligned_cols=186 Identities=29% Similarity=0.511 Sum_probs=167.9
Q ss_pred cccccccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCC--CCCeEEEEEe----CCC
Q 025797 49 ATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSG 122 (248)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~--~~~l~iVaIN----D~~ 122 (248)
+.|..++++.++.+||+++|++.+++.. . .+|.||+|||||||||+++|+++++. +.++++|||| |..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~----~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~ 169 (477)
T PRK08289 96 VKYKAEGDGSDVEAFVAEELADAVGGAD--D----IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEG 169 (477)
T ss_pred HHHhhccCCCcHHHHHHHHHhhhhcCCC--C----CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCC
Confidence 4565557788999999999999765432 1 25789999999999999999998763 2579999996 568
Q ss_pred ChhhhhhhccccCcCcccCceEEEe-cCCcEEECCeEEEEEecCCCCCCCCCCCccc--EEecCcccccCchhhhHHHH-
Q 025797 123 GVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ- 198 (248)
Q Consensus 123 ~~e~~ayLLkYDStHGkf~g~V~v~-e~~~L~inGk~I~v~~~~dP~~i~W~~~Gid--iVVE~TG~F~~~e~a~~HL~- 198 (248)
++++++|||||||+||+|+++|+++ +++.|++||++|++++++||+++||+++||| +||||||+|++++++++||+
T Consensus 170 d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~ 249 (477)
T PRK08289 170 DLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249 (477)
T ss_pred CHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhc
Confidence 9999999999999999999999986 3789999999999999999999999999999 99999999999999999999
Q ss_pred cCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 199 ~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
+||||||||||+|+ |+|||||||||+.|+++ ++|||||| +||
T Consensus 250 ~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~IISnASCTTN~ 293 (477)
T PRK08289 250 KGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIVSAASCTTNA 293 (477)
T ss_pred cCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHHH
Confidence 79999999999997 78999999999999887 89999999 888
No 6
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=3.7e-52 Score=348.30 Aligned_cols=148 Identities=51% Similarity=0.824 Sum_probs=140.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
+||+|||||||||.++|++..+ +.+++++|||+.++++++|||||||+||+|+++|+. +++.|++||++|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 4899999999999999998754 579999999998999999999999999999999997 5788999999999999999
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM 239 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS 239 (248)
|+++||+++|+||||||||.|+++++++.||++||||||||||+++ +++||||||||++|+++ ++||||||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS~aS 148 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVSNAS 148 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEEcCC
Confidence 9999999999999999999999999999999999999999999986 55799999999999987 78999998
No 7
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-52 Score=390.35 Aligned_cols=153 Identities=41% Similarity=0.696 Sum_probs=144.6
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+++|++ +++.|+|||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 457999999999999999999875 46999999995 7999999999999999999999998 5789999999999999
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN 241 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~ 241 (248)
++||++|||++.|+|||+||||.|++++.+..|+++|||||++|+|.++ |.|+||+||||++|++. ++|||||| +|
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IISnasCTTn 155 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVSNASCTTN 155 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEECCccHHH
Confidence 9999999999999999999999999999999999999999999999875 67999999999999986 78999999 78
Q ss_pred c
Q 025797 242 W 242 (248)
Q Consensus 242 ~ 242 (248)
|
T Consensus 156 ~ 156 (337)
T PTZ00023 156 C 156 (337)
T ss_pred H
Confidence 7
No 8
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-52 Score=388.77 Aligned_cols=155 Identities=61% Similarity=1.055 Sum_probs=145.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
+||||||||||||+++|+++++++.++++|+|||..++++++|||||||+||+|+++|++ +++.|++||++|++++++|
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcCC
Confidence 699999999999999999887543579999999999999999999999999999999998 5788999999999999999
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
|+++||+++|+|||+||||.|++++.+..|+++|||||++|+|.++.|.|||||||||+.|++.+++|||||| +||
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 9999999999999999999999999999999999999999999887567999999999999863378999999 887
No 9
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-51 Score=382.71 Aligned_cols=154 Identities=48% Similarity=0.758 Sum_probs=146.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
++||+|||||||||+++|++.++.. ++++|+|||..+++++||||||||+||+|.++|+. +++.|.+||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 3799999999999999999998743 69999999999999999999999999999999996 678999999999999999
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHc-CCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~-GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
||++|||.++|+|+||||||.|+++|++++||++ ||||||+|||+|+ |++||||||||+.|+++ ++|||||| +||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVsnaSCTTNc 156 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVSNASCTTNC 156 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEEEccchhhh
Confidence 9999999999999999999999999999999998 6999999999996 68999999999999996 99999999 998
Q ss_pred c
Q 025797 243 G 243 (248)
Q Consensus 243 ~ 243 (248)
-
T Consensus 157 L 157 (335)
T COG0057 157 L 157 (335)
T ss_pred h
Confidence 4
No 10
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.2e-51 Score=384.32 Aligned_cols=152 Identities=42% Similarity=0.715 Sum_probs=143.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
|++||||||||||||+++|+++++ +++++|+|||..++++++|||||||+||+|+++|++ +++.|.+||++|+++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEc
Confidence 357999999999999999998875 579999999999999999999999999999999998 57889999999999999
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
+||+++||+++|+|||+||||.|++++.+.+||++|||||++|+|.++ +.|+||+||||++|++ ++|||||| +||
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IISnaSCtTn~ 154 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVSNASCTTNC 154 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEECCCcHHHH
Confidence 999999999999999999999999999999999999999999999875 6799999999999964 58999999 887
No 11
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-51 Score=385.79 Aligned_cols=153 Identities=25% Similarity=0.429 Sum_probs=143.2
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccC-ceEEEecCCcEEECC-eEEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~-g~V~v~e~~~L~inG-k~I~v 161 (248)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+ ++|++ +++.|+||| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 457999999999999999999875 57999999996 79999999999999999996 69997 578999999 89999
Q ss_pred EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--
Q 025797 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM-- 239 (248)
Q Consensus 162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS-- 239 (248)
++++||+++||+++|+||||||||.|++.++++.||++||||||||+|++ |.|||||||||+.|++. ++||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IISnaSCT 154 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCCAGAPI 154 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEECCCHH
Confidence 99999999999999999999999999999999999999999999999996 47999999999999987 88999999
Q ss_pred Cccc
Q 025797 240 KNWG 243 (248)
Q Consensus 240 ~~~~ 243 (248)
+||=
T Consensus 155 Tn~L 158 (342)
T PTZ00353 155 AVAL 158 (342)
T ss_pred HHHH
Confidence 8883
No 12
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.6e-51 Score=382.00 Aligned_cols=154 Identities=47% Similarity=0.705 Sum_probs=143.8
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
|++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|+++|++ +++.|++||++|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 568999999999999999999875 469999999999999999999999999999999998 57899999999999999
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
+||+++||+++|+|||+||||.|++++.+..|+++|||||++|||.++ +++++||||||++|++..++|||||| +||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d-~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~ 156 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKN-EDVTIVVGVNEDQLDIEKHTIISNASCTTNC 156 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCC-CCCcEEecccHHHhccCCCCEEECCchHHHH
Confidence 999999999999999999999999999999999999999999999876 45678999999999873278999999 777
No 13
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.5e-50 Score=374.78 Aligned_cols=152 Identities=49% Similarity=0.789 Sum_probs=142.8
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCC-cEEECCe-EEEEEecC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~-~L~inGk-~I~v~~~~ 165 (248)
||||||||||||+++|+++++++.++++|+|||+.++++++|||||||+||+|+++|++ +++ .|.+||+ +|++++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTA-DEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEe-cCCceEEECCeEEEEEEecC
Confidence 69999999999999999997643479999999999999999999999999999999998 466 7999999 99999999
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
||+++||+++|+|||+||||.|++++.+..|+++|||||++|||.++ ++||||+||||+.|++. ++||||+| +||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d-~~plvV~gVN~~~~~~~-~~IISn~sCtTn~ 156 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKG-DAPTIVYGVNHDEYDPE-ERIISNASCTTNC 156 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCC-CCCeecCCCCHHHhCCC-CCEEecCCchHHH
Confidence 99999999999999999999999999999999999999999999875 47999999999999986 78999999 776
No 14
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.4e-49 Score=377.36 Aligned_cols=151 Identities=46% Similarity=0.790 Sum_probs=142.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
+||||||||||||+++|+++++ .++++|+|||+ .+.++++|||||||+||+|+++|++.+++.|.+||++|+|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 7999999999999999998864 46999999996 89999999999999999999999964578999999999999999
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
||+++||+++|+|||+||||.|++++.+..|+++|||||||++|.+ |.|+||+||||++|++. ++|||||| +||
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IISnaSCTTn~ 239 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVSNASCTTNC 239 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeeeCCCcHHHH
Confidence 9999999999999999999999999999999999999999999975 57999999999999987 78999999 787
No 15
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=4e-47 Score=354.53 Aligned_cols=155 Identities=39% Similarity=0.619 Sum_probs=143.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
+||||||||||||+++|+++++. ..++++|+|||..++++++|||||||+||+|+++|+. +++.|++||++|++++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 68999999999999999999863 2579999999999999999999999999999999997 678999999999999999
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cccc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNWG 243 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~~ 243 (248)
+|+++||+++|+|+|+||||.|++++.+..|+++|||||++|+|++.++.++|||||||+.|++. +.|||||| +||-
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~-~~IISnasCTTn~L 159 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAE-HRIVSNASCTTNCI 159 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcC-CCEEECCchHHHHH
Confidence 99999999999999999999999999999999999999999999862123599999999999986 88999999 8873
No 16
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=5.8e-47 Score=353.64 Aligned_cols=153 Identities=42% Similarity=0.728 Sum_probs=143.2
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCc-eEEEecCCcEEECCeEEEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g-~V~v~e~~~L~inGk~I~v~ 162 (248)
+++||||||||||||+.+|.+.+. +++++|+|||+ .++++++|||||||+||+|++ +|++++++.|.+||++|+++
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 458999999999999999998764 57999999996 799999999999999999996 99985667899999999999
Q ss_pred ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--C
Q 025797 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--K 240 (248)
Q Consensus 163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~ 240 (248)
+++||+++||+++|+|||+||||.|++++.+..|+++|||||+||+|++ |.|+|||||||+.|++. ++|||||| +
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IISnasCTT 158 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVSNASCTT 158 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEECCCchH
Confidence 9999999999999999999999999999999999999999999999986 57999999999999986 89999999 7
Q ss_pred cc
Q 025797 241 NW 242 (248)
Q Consensus 241 ~~ 242 (248)
||
T Consensus 159 n~ 160 (338)
T PLN02358 159 NC 160 (338)
T ss_pred HH
Confidence 77
No 17
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-46 Score=351.14 Aligned_cols=154 Identities=34% Similarity=0.582 Sum_probs=142.6
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
|++||+|||||||||+++|++.++ .++++|+|||+ .++++++||||||||||+|+++|+. +++.|.+||++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEe
Confidence 458999999999999999998874 46999999995 7999999999999999999999997 5788999999999999
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Cc
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KN 241 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~ 241 (248)
+++|+++||. |+||||||||.|++++.+..|+++|||||++|+|.+++|.|+|||||||+.|++..++|||||| +|
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 9999999999999999999999999999999999887567999999999999872268999999 78
Q ss_pred cc
Q 025797 242 WG 243 (248)
Q Consensus 242 ~~ 243 (248)
|=
T Consensus 156 ~L 157 (334)
T PRK08955 156 CL 157 (334)
T ss_pred HH
Confidence 73
No 18
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=7.2e-45 Score=337.74 Aligned_cols=153 Identities=39% Similarity=0.677 Sum_probs=142.2
Q ss_pred eEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
||||||||||||+++|+++++. ..++++|+|||..+.++++|||||||+||+|+++|+. +++.|++||+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999998864 3569999999999999999999999999999999997 5789999999999999999
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
|+++||+++|+|+|+||||.|.+.+.+.+||++||++|++|+|.+.++.++|||||||+.|++. ++|||||| +||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~-~~IISnasCtTn~ 156 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAE-HTIVSNASCTTNC 156 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCC-CCEEeCCCcHHHH
Confidence 9999999999999999999999999999999999999999999863223589999999999986 88999999 777
No 19
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-38 Score=285.68 Aligned_cols=136 Identities=43% Similarity=0.734 Sum_probs=127.6
Q ss_pred hhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCCCCCCCCCC
Q 025797 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (248)
Q Consensus 97 IGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP~~i~W~~~ 175 (248)
|||+++ + +. .+++|+|||| +++++++||||||||||+|++++++ ++.++++||++|++++++||..|+|.+.
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 688887 2 32 3999999998 8999999999999999999999998 6888999999999999999999999999
Q ss_pred cccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 176 GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
|+|+|+|+||+|++.+++..|+++||||||||||++ |+||||||||+++|+++ ..|||||| +||
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiSnascttnc 139 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIISNASCTTNC 139 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceeechhhhhcc
Confidence 999999999999999999999999999999999996 68999999999999998 66999999 997
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=99.96 E-value=2.9e-29 Score=234.41 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=116.0
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChh---hhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 89 V~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e---~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
|||||||||||.++|++..+ +++++|+||| .+++ +++|+++|||+|+.+...++. +++.|.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998764 5799999999 4666 888999999999555447776 4667888775
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCCCCeEEeecC--Ccc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSWM--KNW 242 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~~~~IISnAS--~~~ 242 (248)
|+++. .++|+|+||||.|+..+.+..|++.|+|+||+++|+++..+++|||||||++|++. + |||||| +||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs~aSCtTn~ 141 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVRVVSCNTTG 141 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEEecCchHhh
Confidence 55564 37999999999999999999999999999999999875335899999999999865 5 999999 777
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.85 E-value=3.1e-21 Score=179.90 Aligned_cols=137 Identities=21% Similarity=0.231 Sum_probs=108.2
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcc---ccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLk---YDStHGkf~g~V~v~e~~~L~inGk~I~v~ 162 (248)
++||||||||||||.++|++.++ +++++|+|+|. +.++.+||++ || .||+++..+...++..+.+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~----- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGT----- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCC-----
Confidence 37999999999999999998764 57999999996 5799999988 44 6777766655112333444443
Q ss_pred ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCC--CeEEeecCCCCCCCCCCeEEeecC-
Q 025797 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADI--PTYVVGVNEKDYDHEVANIVRSWM- 239 (248)
Q Consensus 163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~--ptiV~GVN~~~y~~~~~~IISnAS- 239 (248)
++++. .++|+|+||||.+...+.+..|+++| ++||+++|.+. +. .+||+|||++.|... + ||+|+|
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~-~-~v~~~sC 140 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK-D-YVRVVSC 140 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC-C-cEEccCh
Confidence 33332 37999999999999999999999999 99999999864 43 358999999999764 4 899998
Q ss_pred -Ccc
Q 025797 240 -KNW 242 (248)
Q Consensus 240 -~~~ 242 (248)
+||
T Consensus 141 tT~~ 144 (341)
T PRK04207 141 NTTG 144 (341)
T ss_pred HHHH
Confidence 555
No 22
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=98.84 E-value=7.2e-09 Score=96.47 Aligned_cols=122 Identities=27% Similarity=0.341 Sum_probs=85.1
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
+||+|.|- |.+|+.++|++.++.-+.++++++-...... ..+..+|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g------------------------~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAG------------------------KELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCC------------------------CeeeeCCceeEEe---
Confidence 58989884 9999999999987533456777663221110 1111233334343
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE---cCCCCCCCCCeEEeecCCCCCCCC-CCeEEeecC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII---TAPAKGADIPTYVVGVNEKDYDHE-VANIVRSWM 239 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII---SAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnAS 239 (248)
|+.+.+|. |+|+||.|||.+.+++-+.+|+++|+ ||| +++-.+++.|.+|.+||++.|+.. +++||||++
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~ 128 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN 128 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence 34445784 89999999999999999999999998 667 333332367999999999999753 137999988
No 23
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=98.46 E-value=4.1e-07 Score=85.30 Aligned_cols=121 Identities=26% Similarity=0.339 Sum_probs=79.2
Q ss_pred eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
||+|.| -|.+|+.++|++.++.-+.++++.+-..... | ..+...|+.+.+. .-+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~-------------g-----------~~~~~~~~~~~~~-~~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA-------------G-----------RKVTFKGKELEVN-EAK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC-------------C-----------CeeeeCCeeEEEE-eCC
Confidence 588888 7999999999987643334555544211000 1 0111122222221 112
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC---CCCCCCCeEEeecCCCCCCCC-CCeEEeecC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVRSWM 239 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP---sk~~D~ptiV~GVN~~~y~~~-~~~IISnAS 239 (248)
+. .| .++|+|+.|||.+.+.+-+..|+++|+ +||..+ ..++|.|.+|.+||++.++.. .+.||||++
T Consensus 56 ~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~ 126 (339)
T TIGR01296 56 IE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPN 126 (339)
T ss_pred hH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCC
Confidence 22 35 379999999999999999999999998 467433 333368999999999999753 145999987
No 24
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.55 E-value=0.00016 Score=67.83 Aligned_cols=125 Identities=25% Similarity=0.222 Sum_probs=81.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhh--hhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~--~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~ 162 (248)
.++||+|.|.|+||+.+++.+.. .+.++++++-|. +.+. +..--+ +|. ....++=+.|.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~--~~~velvAVvdi-d~es~gla~A~~----~Gi---~~~~~~ie~LL--------- 63 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR--SEHLEPGAMVGI-DPESDGLARARR----LGV---ATSAEGIDGLL--------- 63 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc--CCCcEEEEEEeC-ChhhHHHHHHHH----cCC---CcccCCHHHHH---------
Confidence 36899999999999987877664 357999999887 2221 111111 221 11100000110
Q ss_pred ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCC-CCeEEeec
Q 025797 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVRSW 238 (248)
Q Consensus 163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnA 238 (248)
+.-+|. ++|+|+++||.....+-+...+++|. .||--.|.. ..|.+|-.||.+..... ..+||++.
T Consensus 64 -----~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk-~VID~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p 130 (302)
T PRK08300 64 -----AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI-RAIDLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCG 130 (302)
T ss_pred -----hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC-eEEECCccc--cCCcccCcCCHHHHhcccCCCEEECc
Confidence 112453 58999999999988888888888884 577777875 57999999998877532 14677764
No 25
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.42 E-value=0.00035 Score=64.66 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=31.0
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~ 122 (248)
|..||+|.|||.||+.+++.+.......+++++|++..
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~ 38 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA 38 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 45799999999999999998764333458999999873
No 26
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.41 E-value=0.0003 Score=66.02 Aligned_cols=134 Identities=22% Similarity=0.282 Sum_probs=75.9
Q ss_pred ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEE-eCCCChhh-hhhhccccCcCcccCceEEEecCCcEEECCeEEEE
Q 025797 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (248)
Q Consensus 85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaI-ND~~~~e~-~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v 161 (248)
|++||+|.| .|.+|+.++|++.++ +.++++.+ ........ +..++.+. .+|.+.+.. +.+.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~-~~~~~~~~~------------~~~~v 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQ-LDGPIPEEV------------ADMEV 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCccccccccc-ccccccccc------------cceEE
Confidence 568999998 899999999998865 45788888 43311111 11111110 001111110 01222
Q ss_pred EecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCCCCCCC-C--------
Q 025797 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNEKDYDH-E-------- 230 (248)
Q Consensus 162 ~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~~~y~~-~-------- 230 (248)
...+|+. | .++|+|+.|++.-...+-+..-++.|++.|.+|+-- ++ +.|.++.++|.+.|.. +
T Consensus 67 -~~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~-~~~~~~p~vn~~~yg~~e~~~~~~~~ 140 (349)
T PRK08664 67 -VSTDPEA--V--DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDP-DVPLVIPEVNPEHLELIEVQRKRRGW 140 (349)
T ss_pred -EeCCHHH--h--cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCC-CCCcCChhhCHHHHcChHhhHhhccC
Confidence 2334554 3 278999999887544433333335677655555422 22 5678999999876631 1
Q ss_pred CCeEEeecC
Q 025797 231 VANIVRSWM 239 (248)
Q Consensus 231 ~~~IISnAS 239 (248)
+.+||||++
T Consensus 141 ~~~iVa~p~ 149 (349)
T PRK08664 141 DGFIVTNPN 149 (349)
T ss_pred CceEEEccC
Confidence 025999988
No 27
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.23 E-value=0.00048 Score=62.53 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=28.6
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+||+|.| +||+|+.++|.+.+. +++++|++-|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~ 35 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFER 35 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 6999999 799999999988754 57999999884
No 28
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.18 E-value=0.0011 Score=60.07 Aligned_cols=32 Identities=38% Similarity=0.426 Sum_probs=24.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+||+|.|+|+||+.+++.+... +.+++++|-+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~ 33 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIV 33 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEE
Confidence 6999999999999999987653 3456655543
No 29
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.93 E-value=0.002 Score=59.89 Aligned_cols=122 Identities=25% Similarity=0.238 Sum_probs=78.8
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhh--hhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN--ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~--~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
++||||.|.|+||+..++.+.+ .+.+++++|-|+ +.+. ++.--+ +|. .....+-+.+.-
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~--~~~~elvaV~d~-d~es~~la~A~~----~Gi---~~~~~~~e~ll~--------- 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR--SEHLEMVAMVGI-DPESDGLARARE----LGV---KTSAEGVDGLLA--------- 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh--CCCcEEEEEEeC-CcccHHHHHHHH----CCC---CEEECCHHHHhc---------
Confidence 3689999999999988776664 346899999886 2221 111111 121 111100011110
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCC-CCeEEeecC
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVRSWM 239 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnAS 239 (248)
+-++|+|++||+.....+-+...+++| |.||.-.|.. ..|.+|--||-+..... ..+||++..
T Consensus 62 ----------~~dIDaV~iaTp~~~H~e~a~~al~aG-k~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~c~~ 125 (285)
T TIGR03215 62 ----------NPDIDIVFDATSAKAHARHARLLAELG-KIVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVTCGG 125 (285)
T ss_pred ----------CCCCCEEEECCCcHHHHHHHHHHHHcC-CEEEECCccc--cCCccCCCcCHHHHhcCcCCCEEEcCc
Confidence 126899999999998888888888887 4677778874 56999999998776531 146777654
No 30
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.90 E-value=0.0009 Score=53.36 Aligned_cols=112 Identities=28% Similarity=0.308 Sum_probs=67.7
Q ss_pred eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCC--hhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~--~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
||+|-| .|.+|+.++|.+.++ +.++++.+-.... -+.+.. .++.+.+.-. ..+ .+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~------~~~~~~~~~~-------------~~~-~~ 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSE------VFPHPKGFED-------------LSV-ED 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHH------TTGGGTTTEE-------------EBE-EE
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeeh------hccccccccc-------------eeE-ee
Confidence 799999 999999999999875 5688887755422 122222 2222211111 111 11
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC--CCCCCeEEeecCCCC
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK--GADIPTYVVGVNEKD 226 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk--~~D~ptiV~GVN~~~ 226 (248)
-+++.+ .++|+|+.||+-....+-+...++.|+ +||=.++.- +++.|..|-.||.+.
T Consensus 59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~-~ViD~s~~~R~~~~~~~~~pevn~~~ 117 (121)
T PF01118_consen 59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI-KVIDLSGDFRLDDDVPYGLPEVNREQ 117 (121)
T ss_dssp TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS-EEEESSSTTTTSTTSEEE-HHHHHHH
T ss_pred cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc-EEEeCCHHHhCCCCCCEEeCCcCHHH
Confidence 233332 489999999999999988888889998 454333321 124566666666544
No 31
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.90 E-value=0.0026 Score=59.72 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=30.0
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~ 121 (248)
|.+||+|.|||.||+.++|.+.++. +.++++|+|-|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 5689999999999999999876532 226899999774
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.89 E-value=0.003 Score=59.12 Aligned_cols=132 Identities=20% Similarity=0.244 Sum_probs=77.7
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCC-Ch-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~-~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
+||+|.|- |++|+.++|++.++ +.++++++-+.. .. +....++.+ ..|+.+.+.+. .. .+.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~------------~~-~~~ 64 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKW-IEPGDMPEYVR------------DL-PIV 64 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhccc-cccCCCccccc------------ee-EEE
Confidence 48999994 99999999988765 347888775431 11 111111111 00011111000 01 122
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCCCCCCC-C-------CCe
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNEKDYDH-E-------VAN 233 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~~~y~~-~-------~~~ 233 (248)
.-+|+ .| .++|+|+.|++.-...+-...-+++|++-|.+|+-- + ++.|.++.++|++.|.. + +.+
T Consensus 65 ~~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~-~~~~~~~p~vn~~~~~~~e~~~~~~~~~~ 139 (341)
T TIGR00978 65 EPEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMD-PDVPLIIPEVNSDHLELLKVQKERGWKGF 139 (341)
T ss_pred eCCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccC-CCCceeccccCHHHHhhHHhhhhhccCcc
Confidence 22333 34 479999999988766666555556788766666542 3 26789999999886742 1 135
Q ss_pred EEeecC
Q 025797 234 IVRSWM 239 (248)
Q Consensus 234 IISnAS 239 (248)
||+|.+
T Consensus 140 iVanPg 145 (341)
T TIGR00978 140 IVTNPN 145 (341)
T ss_pred EEeCCC
Confidence 899987
No 33
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.84 E-value=0.0034 Score=59.48 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=62.0
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
++||+|.|+|+|||.+++++... +.+++|+|-|..+.+.+.- + .+ ++...
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~~----~--~~----------------------v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLDT----E--TP----------------------VYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHhh----c--CC----------------------ccccC
Confidence 58999999999999999987654 5699999988754333210 0 01 11111
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
|..+ + ...+|+|+-||+-..+.+.+..-|++|.. ||-|-|
T Consensus 53 d~~e--~-l~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~ 92 (324)
T TIGR01921 53 DDEK--H-LDDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFD 92 (324)
T ss_pred CHHH--h-ccCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCC
Confidence 2111 1 14689999999999999999888988864 666655
No 34
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.63 E-value=0.0053 Score=58.44 Aligned_cols=37 Identities=30% Similarity=0.528 Sum_probs=29.1
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~ 121 (248)
|+++|+|-|||.+|+.+++.+.++. +-+++|++|-+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 3589999999999999999876542 246788888654
No 35
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.44 E-value=0.0087 Score=54.21 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+||+|.|+|+||+.+++.+.... ..+++++|-|.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~ 35 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR 35 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC
Confidence 58999999999999999876531 25899998887
No 36
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.39 E-value=0.012 Score=53.73 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=29.4
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.++||||.|+|+||+.+++.+... ...+++++|-|+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr 40 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR 40 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC
Confidence 468999999999999999887642 246899988887
No 37
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.33 E-value=0.0064 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.2
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
|||+|+|+ ||+||.+++.+.+. +.++++++-|.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEec
Confidence 68999999 99999999998874 46999998776
No 38
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.06 E-value=0.0084 Score=56.56 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhC-----CCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~-----~~~~l~iVaIND~ 121 (248)
+||+|-|||-||+.++|.+.++ .+.++++|+|-|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999988763 2346899999774
No 39
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.86 E-value=0.017 Score=55.03 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=58.7
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDG 156 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inG 156 (248)
+++||+|.|||-+|+-++|++.++. +..+++++|-+... . +. .+| +. +..... ++..+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~-~----~~~~~~---~~-~~~~~~-~~~~~~--- 68 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDG-S----LVRDLD---LL-NAEVWT-TDGALS--- 68 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccc-h----hccccc---cc-chhhhe-eccccc---
Confidence 6799999999999999999987653 24578888866511 0 11 111 00 001110 111111
Q ss_pred eEEEEEecCCCCCCCCCCCcccEEecCccc-ccCchhhhHHHHc-CCCEEEEcCC
Q 025797 157 KLIKVVSNRDPLQLPWAELGIDIVIEGTGV-FVDGPGAGKHIQA-GAKKVIITAP 209 (248)
Q Consensus 157 k~I~v~~~~dP~~i~W~~~GidiVVE~TG~-F~~~e~a~~HL~~-GAKKVIISAP 209 (248)
.+ .++-+ +..+|+|||.+|. ..+.+.+...+++ ...|.|+||-
T Consensus 69 --------~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaN 113 (333)
T COG0460 69 --------LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTAN 113 (333)
T ss_pred --------cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCC
Confidence 11 12222 3467899999998 6555434444444 6778888864
No 40
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.78 E-value=0.019 Score=51.81 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=28.6
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
++||+|.|+ ||||+.+++.+.+. ++++++++-|.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~ 35 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR 35 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 379999998 99999999987653 46899998886
No 41
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.59 E-value=0.036 Score=51.02 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=28.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
++|+|.|+|+||..+++..-+-. .+++++++-|.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~ 34 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR 34 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC
Confidence 47999999999999999865422 56899999997
No 42
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.48 E-value=0.12 Score=46.37 Aligned_cols=34 Identities=44% Similarity=0.634 Sum_probs=29.5
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+.++|+|-|||.+|+.+++.+.+. ..++|+|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence 457999999999999999988764 5899999886
No 43
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.12 E-value=0.15 Score=48.56 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=72.3
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
.++|+| |- |-+||.+++++-+|.-+ + ++. ||.. .... .+.++..+|+.+.|-.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fp-v~~l~-------------l~~s---------~~~s-~gk~i~f~g~~~~V~~ 57 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLE-IEQIS-------------IVEI---------EPFG-EEQGIRFNNKAVEQIA 57 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCc-hhhee-------------eccc---------cccc-CCCEEEECCEEEEEEE
Confidence 468999 87 99999999998876321 1 111 1111 0000 2345667788777753
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCC-CCCeEEeec
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDH-EVANIVRSW 238 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~-~~~~IISnA 238 (248)
.++-+|. |+|+++= .|.=...+-+..-.++|+ ++|.--+ .+.|.|.+|-.||.+.+.. ....||+|-
T Consensus 58 ---l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanP 128 (322)
T PRK06901 58 ---PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLP 128 (322)
T ss_pred ---CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECC
Confidence 3445774 7998765 443333333322223455 6666543 3458999999999998865 114698874
No 44
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.94 E-value=0.062 Score=52.05 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=29.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~ 121 (248)
+++||+|-|||.||+.+++.+.++. +.++++++|-|.
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~ 45 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR 45 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC
Confidence 3689999999999999998875432 236889988775
No 45
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.74 E-value=0.15 Score=47.44 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=28.3
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
++||+|+|+ ||+||.+.|+..+. +.+++++.-+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~ 36 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDR 36 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEec
Confidence 579999999 99999999998864 46788777664
No 46
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.53 E-value=0.36 Score=45.95 Aligned_cols=122 Identities=21% Similarity=0.302 Sum_probs=75.8
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
+++||+|-|- |-.|+.++|++.++.-+.++++.+...... |+ .+...|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~sa-------------G~-----------~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESA-------------GE-----------TLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcC-------------Cc-----------eEEECCcceEEE-
Confidence 4579999997 999999999998754455677666322110 11 111223333332
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC--CCCCCCeEEeecCC---CCCCCCCCeEEeec
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA--KGADIPTYVVGVNE---KDYDHEVANIVRSW 238 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs--k~~D~ptiV~GVN~---~~y~~~~~~IISnA 238 (248)
++++++|. ++|+|+=|++.=...+-+...+++|++=|=+|+.- ++ |.|..|-.||. +.+. + .+||+|.
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~-~vP~~lPEvn~~~l~~i~-~-~~iIAnP 130 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEP-DVPLVVPEVNPFVLADYR-N-RNIIAVA 130 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCC-CCceEccccCHHHHhhhc-c-CCEEECC
Confidence 46677885 68999988876555555555556676422233322 43 67989999999 5553 2 4688885
No 47
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.49 E-value=0.15 Score=48.07 Aligned_cols=124 Identities=23% Similarity=0.254 Sum_probs=68.4
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCCh-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~ 162 (248)
|++||+|.|. |.+|+.++|.+.++ +.++++++-+.... +.++. .|+.+.+. .+ ..+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~~------~~~~~~~~----------~~----~~~ 58 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSD------VHPHLRGL----------VD----LVL 58 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchHH------hCcccccc----------cC----cee
Confidence 3479999997 99999999998765 45788777653111 11111 12222110 00 011
Q ss_pred ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC----CCCC------------------CCeEEe
Q 025797 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA----KGAD------------------IPTYVV 220 (248)
Q Consensus 163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs----k~~D------------------~ptiV~ 220 (248)
.+-++ ..| .++|+|+-||+--...+-+..-+++| ++||..-+ ++.| .|-.+-
T Consensus 59 ~~~~~--~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG--~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lp 132 (343)
T PRK00436 59 EPLDP--EIL--AGADVVFLALPHGVSMDLAPQLLEAG--VKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLP 132 (343)
T ss_pred ecCCH--HHh--cCCCEEEECCCcHHHHHHHHHHHhCC--CEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecC
Confidence 11122 233 35899988988766666555555554 44554432 1112 234444
Q ss_pred ecCCCCCCCCCCeEEeec
Q 025797 221 GVNEKDYDHEVANIVRSW 238 (248)
Q Consensus 221 GVN~~~y~~~~~~IISnA 238 (248)
.+|.+.++. .+||+|.
T Consensus 133 e~~~~~i~~--~~iIanP 148 (343)
T PRK00436 133 ELNREEIKG--ARLIANP 148 (343)
T ss_pred ccCHHHhcC--CCEEECC
Confidence 567776653 3788885
No 48
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.24 E-value=0.074 Score=45.13 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=26.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~ 122 (248)
.+|+|.|||+||+.++|.+... .++|++.+-..
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~ 69 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSP 69 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSC
T ss_pred CEEEEEEEcCCcCeEeeeeecC---CceeEEecccC
Confidence 5899999999999999987653 47988887653
No 49
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=94.12 E-value=0.33 Score=43.22 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=29.4
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+..+|+|-|||.+|+.+++.+.++ ...+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~---G~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE---GGKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 447999999999999999998864 4789999986
No 50
>PRK11579 putative oxidoreductase; Provisional
Probab=93.97 E-value=0.2 Score=46.37 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=58.4
Q ss_pred eeeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 86 ~vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
++||||.|+|+||+. .++++.. .+.+++++|.|+ +.+.+.- .|.+ + +++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~--~~~~~l~av~d~-~~~~~~~---------~~~~-~---------------~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAG--TPGLELAAVSSS-DATKVKA---------DWPT-V---------------TVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhh--CCCCEEEEEECC-CHHHHHh---------hCCC-C---------------cee--
Confidence 589999999999984 4565443 246899999987 3333320 1111 0 111
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.|++++- .+-++|+|+-||--....+.+..=|++| |-|++=-|-
T Consensus 54 ~~~~ell-~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 54 SEPQHLF-NDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred CCHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 1222221 1236899999999887777777777777 567766663
No 51
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.81 E-value=0.16 Score=39.09 Aligned_cols=95 Identities=27% Similarity=0.364 Sum_probs=62.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
+||+|.|+|++|+..++.+... .+.+++++|-|+. .+.....-+ +|... .. .+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d~~-~~~~~~~~~------~~~~~-~~-~~----------------- 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCDPD-PERAEAFAE------KYGIP-VY-TD----------------- 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-TTTEEEEEEECSS-HHHHHHHHH------HTTSE-EE-SS-----------------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEeCC-HHHHHHHHH------Hhccc-ch-hH-----------------
Confidence 5899999999999999888765 3578999999983 333222111 11111 11 11
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.+++- .+..+|+|+-||.-....+-+..=|++|. -|++--|.
T Consensus 54 ~~~ll-~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEELL-ADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHHH-HHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHHH-HhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 11111 12268999999998877777777777776 78887774
No 52
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=93.70 E-value=0.2 Score=48.42 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=75.8
Q ss_pred eEEEeCC-ChhhHHHHHHHh-hCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 88 KVAINGF-GRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 88 kV~INGF-GRIGRlvlR~~~-~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
+|||-|- |-.|+-+++++. ++.-+-.+++..-..- . .+..+..+|+.+.|. +-
T Consensus 2 ~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~-------------s-----------~g~~~~f~~~~~~v~-~~ 56 (366)
T TIGR01745 2 NVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ-------------L-----------GQAAPSFGGTTGTLQ-DA 56 (366)
T ss_pred eEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh-------------h-----------CCCcCCCCCCcceEE-cC
Confidence 7999997 999999999877 4322212333332210 0 111223344444332 22
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCC-CCeE--EeecC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE-VANI--VRSWM 239 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~-~~~I--ISnAS 239 (248)
+|. -.| .++|+|+=|.|.-...+-+..-.++|...++|..-+ .+.|.|.+|-.||.+.+... +..| |+|
T Consensus 57 ~~~-~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ian-- 131 (366)
T TIGR01745 57 FDI-DAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVG-- 131 (366)
T ss_pred ccc-ccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEEC--
Confidence 222 145 379999999887766655555556787777887654 34589999999999987642 1346 454
Q ss_pred Ccc
Q 025797 240 KNW 242 (248)
Q Consensus 240 ~~~ 242 (248)
-||
T Consensus 132 PNC 134 (366)
T TIGR01745 132 GNC 134 (366)
T ss_pred cCH
Confidence 666
No 53
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.31 E-value=0.084 Score=51.49 Aligned_cols=92 Identities=27% Similarity=0.385 Sum_probs=53.2
Q ss_pred ceeeEEEeCCChhhHHHH-HHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEecC----CcEEECCeE
Q 025797 85 AKLKVAINGFGRIGRNFL-RCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDN----ETISVDGKL 158 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvl-R~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~e~----~~L~inGk~ 158 (248)
.|+|||+.|-|..|+-++ +++ .- +.+++|+|.|. .+....| ||-.++.=.-.+..++- ..|. -| +
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~-~m--~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~-aG-K 86 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIA-SM--PGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIE-AG-K 86 (438)
T ss_pred CceEEEEecccccchHHHHHHh-hc--CCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHh-cC-c
Confidence 689999999999999665 444 22 46999999997 3444444 45555543222222100 1111 12 2
Q ss_pred EEEEecCCCCCCCCCCCcccEEecCccccc
Q 025797 159 IKVVSNRDPLQLPWAELGIDIVIEGTGVFV 188 (248)
Q Consensus 159 I~v~~~~dP~~i~W~~~GidiVVE~TG~F~ 188 (248)
|.++. |- ++-...-.||+|||.||+-.
T Consensus 87 i~vT~--D~-~~i~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 87 IAVTD--DA-ELIIANDLIDVIIDATGVPE 113 (438)
T ss_pred EEEec--ch-hhhhcCCcceEEEEcCCCcc
Confidence 33332 22 22233457999999999854
No 54
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.86 E-value=0.53 Score=44.66 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=73.1
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
++||+|-|- |-+|+.++|++.++.-+.++++.+-..... |+. +. ..|+...+ ..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~a-------------G~~---l~--------~~~~~l~~-~~ 58 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESA-------------GHS---VP--------FAGKNLRV-RE 58 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccC-------------CCe---ec--------cCCcceEE-ee
Confidence 379999996 999999999998654455676666443111 210 11 11211112 22
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCC-CCCeEEeec
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVRSW 238 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~-~~~~IISnA 238 (248)
.++ .+| .++|+|+=|++--...+-+..-+++|++-|=+|+.-.-.|.|-+|-.||.+.++. .+.+||+|.
T Consensus 59 ~~~--~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnP 129 (336)
T PRK05671 59 VDS--FDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSP 129 (336)
T ss_pred CCh--HHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECC
Confidence 222 236 3799999998854343433333456764333455432236799999999988765 114688875
No 55
>PLN02477 glutamate dehydrogenase
Probab=92.15 E-value=0.95 Score=44.32 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=28.6
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
..+|+|-|||-+|+.+++.+.++ ..+||+|.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~---GakVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEK---GGKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CCEEEEEECC
Confidence 36899999999999999998764 4799999885
No 56
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.83 E-value=0.21 Score=46.47 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.7
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
-.+|||.|||+|||.++|.+... .++|++.+-
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 35899999999999999987542 468888764
No 57
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.67 E-value=0.83 Score=42.84 Aligned_cols=100 Identities=22% Similarity=0.163 Sum_probs=56.6
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP 167 (248)
+|+|.|-|.||.+.+.++-.. .--+|+++ |. +.+.++.--++. ..++.... ... ..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~-d~-~~~Rl~~A~~~~------g~~~~~~~-------~~~------~~~ 227 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL--GASVVIVV-DR-SPERLELAKEAG------GADVVVNP-------SED------DAG 227 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCceEEEe-CC-CHHHHHHHHHhC------CCeEeecC-------ccc------cHH
Confidence 799999999998875554322 22466666 54 334444333322 11222110 000 000
Q ss_pred C---CCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797 168 L---QLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK 211 (248)
Q Consensus 168 ~---~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk 211 (248)
. ++.. ..|+|+||||||.....+.+-..++.|-.=|++..++.
T Consensus 228 ~~~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 228 AEILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred HHHHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 0 1111 15899999999966555666666666777777777764
No 58
>PRK06487 glycerate dehydrogenase; Provisional
Probab=91.49 E-value=0.26 Score=45.97 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=25.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|||.|||+|||.++|.+... .++|++.+..
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~~ 180 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF---GMRVLIGQLP 180 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 5899999999999999987532 4688887643
No 59
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.39 E-value=0.41 Score=35.72 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=29.8
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhh
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHL 130 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayL 130 (248)
||+|.|+|++|..++|.+++..-.+-++..+++. +.+.+.++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~ 42 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAEL 42 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHH
Confidence 7999999999999999988753233577766554 44555544
No 60
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.84 E-value=0.78 Score=44.41 Aligned_cols=121 Identities=22% Similarity=0.169 Sum_probs=73.8
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeE---EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLD---VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~---iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~ 162 (248)
++|+|-|- |-.|+-++|.+++.. .+. ++..-.. .. | +..+..+|+...++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~--~f~~~~l~~~ss~----~s----------g----------~~~~~f~g~~~~v~ 55 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEN--DFDLIEPVFFSTS----QA----------G----------GAAPSFGGKEGTLQ 55 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCC--CCCcCcEEEecch----hh----------C----------CcccccCCCcceEE
Confidence 68999997 999999998555443 333 3332111 00 0 01112344444454
Q ss_pred ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCC--CC-eEEe
Q 025797 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHE--VA-NIVR 236 (248)
Q Consensus 163 ~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~--~~-~IIS 236 (248)
...++.. | .++|+|+=|+|.=...+-+....++|++.+||.--+ -+.|.|.+|-.||.+.+... +. ++|+
T Consensus 56 ~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa 131 (369)
T PRK06598 56 DAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV 131 (369)
T ss_pred ecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence 4444443 4 369999999887666555555557788767776544 23478999999999887531 11 4677
Q ss_pred e
Q 025797 237 S 237 (248)
Q Consensus 237 n 237 (248)
|
T Consensus 132 n 132 (369)
T PRK06598 132 G 132 (369)
T ss_pred c
Confidence 5
No 61
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.67 E-value=0.32 Score=45.40 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|||.|||+|||.++|.+... .++|++.+-
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f---g~~V~~~~~ 178 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL---GMKVLYAEH 178 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 5899999999999999987532 468777753
No 62
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.92 E-value=2 Score=41.23 Aligned_cols=120 Identities=20% Similarity=0.355 Sum_probs=71.5
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeE---EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLD---VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~---iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~ 160 (248)
..+||+|-|- |-.|+-++|++.+++ .++ +..+-.. +. -| ..+...|+.+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~--~f~v~~l~~~aS~---~s----------aG-----------k~~~~~~~~l~ 57 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKET--KFNIAEVTLLSSK---RS----------AG-----------KTVQFKGREII 57 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCC--CCCcccEEEEECc---cc----------CC-----------CCeeeCCcceE
Confidence 3479999997 999999999987543 343 3222111 00 01 12223344333
Q ss_pred EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCCCCeEEee
Q 025797 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHEVANIVRS 237 (248)
Q Consensus 161 v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~~~~IISn 237 (248)
+ ++-+|.. | .++|+|+=|+|.=...+-+....++|+ +||.--+ -+.|.|.+|-.||.+.+... ..||+|
T Consensus 58 v-~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIan 129 (347)
T PRK06728 58 I-QEAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIAV 129 (347)
T ss_pred E-EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEEC
Confidence 3 3335543 5 368999988876555555444456664 4443322 22367999999999988753 468887
Q ss_pred c
Q 025797 238 W 238 (248)
Q Consensus 238 A 238 (248)
.
T Consensus 130 P 130 (347)
T PRK06728 130 P 130 (347)
T ss_pred C
Confidence 4
No 63
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.82 E-value=0.55 Score=44.31 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=29.8
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~ 121 (248)
|+++|+|-|||-+|+.++|.+.++. +-++++++|-|.
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds 44 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDT 44 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 5689999999999999999876531 235899999874
No 64
>PLN02928 oxidoreductase family protein
Probab=89.78 E-value=0.42 Score=45.27 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=26.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|.|||+||+.++|.+... .++|++.+-.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af---G~~V~~~dr~ 191 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF---GVKLLATRRS 191 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 5899999999999999987643 4688887653
No 65
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=89.67 E-value=1.4 Score=41.71 Aligned_cols=123 Identities=24% Similarity=0.275 Sum_probs=66.9
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC-CCh-hhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS-GGV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~-~~~-e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
+||+|-|- |.+|+.++|.+.++ +.++++++-++ ... +.+. ..|+.+.+... . .+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~------~~~~~l~~~~~-------------~-~~~ 58 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVS------EVHPHLRGLVD-------------L-NLE 58 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChH------HhCccccccCC-------------c-eee
Confidence 48999998 99999999998865 46787766332 111 1111 11222211000 0 111
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEE-EcCCCCCCCCC------------------eEEee---
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI-ITAPAKGADIP------------------TYVVG--- 221 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVI-ISAPsk~~D~p------------------tiV~G--- 221 (248)
.-++++ |.+ ++|+|+=|++--...+-+..-+++| ++|| +|+.-.- +.| .++||
T Consensus 59 ~~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G-~~VIDlS~~fR~-~~~~~y~~~y~~~~~~~~~~~~~~y~lPE 133 (346)
T TIGR01850 59 PIDEEE--IAE-DADVVFLALPHGVSAELAPELLAAG-VKVIDLSADFRL-KDPEVYEKWYGFEHAGPELLQEAVYGLPE 133 (346)
T ss_pred cCCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCC-CEEEeCChhhhc-CChhhhHHhcCCCCCChhhhcCceEECCc
Confidence 223332 322 6899999998776666666555666 3443 3443211 111 25555
Q ss_pred cCCCCCCCCCCeEEeec
Q 025797 222 VNEKDYDHEVANIVRSW 238 (248)
Q Consensus 222 VN~~~y~~~~~~IISnA 238 (248)
+|.+++.. .+||+|-
T Consensus 134 ~n~~~i~~--~~iianP 148 (346)
T TIGR01850 134 LHREEIKG--ARLIANP 148 (346)
T ss_pred cCHHHhCC--CcEEEcC
Confidence 56666654 3688885
No 66
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.65 E-value=0.59 Score=43.04 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=39.1
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC---------CChhhhhhhccccCcCc
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLG 138 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~---------~~~e~~ayLLkYDStHG 138 (248)
+..+|+|-|||-+|+.+++.+.+. ..++|+|.|. .|++.+..|++++..++
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~ 96 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRR 96 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcC
Confidence 346899999999999999998864 4799999883 35666766676665444
No 67
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=89.32 E-value=1.1 Score=40.40 Aligned_cols=103 Identities=21% Similarity=0.322 Sum_probs=68.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
...+|.|.|.|.+||.++-.-+.. ..+++|+++=|. +.+.+ |++-++|.+.+-+.|
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv-~~~~V----------G~~~~~v~V~~~d~l------------ 138 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDV-DPDKV----------GTKIGDVPVYDLDDL------------ 138 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchh-hcCceEEEEecC-CHHHh----------CcccCCeeeechHHH------------
Confidence 346899999999999887665543 357999999887 33322 776666665321111
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCC
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP 216 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~p 216 (248)
++. -.+.++|++|=|.-.=...+-+..-.++|+|-++=-||..= +.|
T Consensus 139 ---e~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l-~~p 185 (211)
T COG2344 139 ---EKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRL-QVP 185 (211)
T ss_pred ---HHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEe-cCC
Confidence 100 12347888887766655556666777899999998899752 455
No 68
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.21 E-value=0.67 Score=40.46 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=57.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
..+|+|.|.|.+|+.+++.... ....++++++-|. +.+.. |+. ++|.++ ..-.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~-d~~~~----------~~~-------------i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDV-DPEKI----------GTK-------------IGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEEC-Chhhc----------CCE-------------eCCeEE--cCHH
Confidence 3689999999999999886322 2346899988765 22221 110 122222 1111
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
+..++ ..+.++|+|+-|+......+-...-+++|.+-|+.-.|-
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 22222 134679999999886554444444455788877776775
No 69
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.13 E-value=0.5 Score=45.77 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=24.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|||.|||+||+.++|.+... .++|++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f---Gm~V~~~d 181 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL---GMRVYFYD 181 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEC
Confidence 5899999999999999987643 35776665
No 70
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.08 E-value=0.52 Score=43.99 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.6
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
-.+|||.|||+||+.++|.+... .+++++.+.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 36899999999999999976532 468888875
No 71
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=88.85 E-value=0.53 Score=44.19 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=23.6
Q ss_pred eeeEEEeCCChhhHHHHHHHh-hCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~-~~~~~~l~iVaIN 119 (248)
-.+|||.|||+|||.++|.+. .. .++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 368999999999999998764 32 46776543
No 72
>PRK07574 formate dehydrogenase; Provisional
Probab=88.67 E-value=0.55 Score=45.48 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=25.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|+|.|||+||+.++|.+... .++|.+.+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f---G~~V~~~dr 223 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF---DVKLHYTDR 223 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 5799999999999999987642 468877764
No 73
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.40 E-value=0.61 Score=43.84 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=25.3
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
-.+|+|.|||+||+.++|.+... .++|++.+-
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF---GMRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECC
Confidence 36899999999999999987643 367776653
No 74
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.31 E-value=0.62 Score=44.03 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=24.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
..|||.|||+||+.+++.+... .+++++.+-
T Consensus 143 kTvGIiG~G~IG~~va~~l~af---gm~v~~~d~ 173 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF---GMKVIGYDP 173 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEEECC
Confidence 5899999999999999766532 478777654
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=88.00 E-value=1.3 Score=41.54 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=55.2
Q ss_pred eeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 86 ~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
++||||.|+|+|++ ..++.+... .+.+++++|-|+. .+.....=+|. + +.+ +
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~~-~~~~~~~~~~~-------~-~~~---------------~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRRH-AKPEEQAPIYS-------H-IHF---------------T-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcCC-hhHHHHHHhcC-------C-Ccc---------------c--
Confidence 37999999999985 345654332 2468999999983 22221111221 0 111 0
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.|.+++ ..+.++|+|+-||-.....+-+..=|++| |-|++=-|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 111111 11235788888888777777777777777 567766563
No 76
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=87.64 E-value=1.9 Score=41.42 Aligned_cols=124 Identities=27% Similarity=0.332 Sum_probs=73.2
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
++|||-| -|-.|+-++..+-++ ...++.+.+=-. .+-.|+ ..+...|+.+.+- +.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~-~f~~~~~~~~AS------------~rSaG~----------~~~~f~~~~~~v~-~~ 57 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER-HFPFEELVLLAS------------ARSAGK----------KYIEFGGKSIGVP-ED 57 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc-CCCcceEEEEec------------ccccCC----------ccccccCccccCc-cc
Confidence 6899996 599999999888775 334443322111 111111 1122333332221 11
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC---CCCCCCeEEeecCCCCCCCCC-Ce-EEeec
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA---KGADIPTYVVGVNEKDYDHEV-AN-IVRSW 238 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs---k~~D~ptiV~GVN~~~y~~~~-~~-IISnA 238 (248)
-.+...|. ++|||+=|-|.=.+.+-...--++| .++|+.-+ .+.|.|-+|-.||.+.+...+ .. ||+|.
T Consensus 58 ~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 58 AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred cccccccc--cCCEEEEeCchHHHHHHHHHHHHcC--CEEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 13445666 7999999987655555444444567 68898765 345899999999988765431 13 88774
No 77
>PLN02306 hydroxypyruvate reductase
Probab=87.37 E-value=0.75 Score=44.47 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=23.8
Q ss_pred eeeEEEeCCChhhHHHHHHHh-hCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~-~~~~~~l~iVaIN 119 (248)
-.+|||.|||+||+.++|.+. . -.++|++.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~---fGm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEG---FKMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc---CCCEEEEEC
Confidence 358999999999999998753 2 146777664
No 78
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=87.08 E-value=0.49 Score=44.78 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=24.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|||.|+||||+.++|.+.. -.++|+.-+-
T Consensus 147 ktvGIiG~GrIG~avA~r~~~---Fgm~v~y~~~ 177 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKG---FGMKVLYYDR 177 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhc---CCCEEEEECC
Confidence 589999999999999998753 2467665553
No 79
>PLN02775 Probable dihydrodipicolinate reductase
Probab=86.65 E-value=2.3 Score=39.99 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=29.0
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+++||.|||. ||+|+.+.++... .++++|+.-|+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~ 44 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFT 44 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEecc
Confidence 5689999997 9999999998775 46999998775
No 80
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=86.49 E-value=0.98 Score=42.25 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|+|.|||.||+.++|.+... .+++.+.+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af---G~~V~~~~~ 167 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW---GFPLRCWSR 167 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 5899999999999999987642 467777764
No 81
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.38 E-value=2.6 Score=38.11 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=48.6
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP 167 (248)
+|.|.|.|-||.+.+.++..+ ..+.|++-|. +.+.+....++ + . +|- .+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~---G~~~v~~~~~-~~~rl~~a~~~----~----~----------i~~--------~~~ 196 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA---GGSPPAVWET-NPRRRDGATGY----E----V----------LDP--------EKD 196 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc---CCceEEEeCC-CHHHHHhhhhc----c----c----------cCh--------hhc
Confidence 689999999999988877543 2443333343 22232211111 0 0 110 000
Q ss_pred CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
...|+|+|+||+|.-...+.+-..++.|.+=|++..+
T Consensus 197 -----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 197 -----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred -----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeec
Confidence 1247899999999754445555566666665655544
No 82
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=86.23 E-value=3.1 Score=39.57 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=69.5
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
.++||+|.|- |.+|+.++|++.++.-+.++++.+-..-.. |+ .+. .+|+... +.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-------------Gk---~~~--------~~~~~~~-v~ 60 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-------------GK---KVT--------FEGRDYT-VE 60 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-------------CC---eee--------ecCceeE-EE
Confidence 5679999985 999999999988753344566555211111 11 111 1222222 22
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC-CCCCCCeEEeecCCCCCCCCC-----CeEEee
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA-KGADIPTYVVGVNEKDYDHEV-----ANIVRS 237 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs-k~~D~ptiV~GVN~~~y~~~~-----~~IISn 237 (248)
.-++. .| .++|+|+=|+|-=...+-+..-.++|++=|=+|+.- -.++.|-+|-.||.+.++..+ ..||+|
T Consensus 61 ~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIan 136 (344)
T PLN02383 61 ELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIAN 136 (344)
T ss_pred eCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEEC
Confidence 22333 34 378999977765433333333334565322244432 123678888899988876431 238888
Q ss_pred cC
Q 025797 238 WM 239 (248)
Q Consensus 238 AS 239 (248)
..
T Consensus 137 Pg 138 (344)
T PLN02383 137 PN 138 (344)
T ss_pred CC
Confidence 53
No 83
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=84.90 E-value=2 Score=33.67 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=24.0
Q ss_pred eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
||+|.|. |++|+.+++.+... +.+++++|-+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~ 32 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAA 32 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEe
Confidence 5899995 99999998877653 3578888843
No 84
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.88 E-value=1.3 Score=41.72 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|+|.|+|+||+.+++.+... ..+|++.+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~ 177 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF---GATITAYDA 177 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEeC
Confidence 5899999999999999987642 467776653
No 85
>PRK14030 glutamate dehydrogenase; Provisional
Probab=84.77 E-value=5 Score=39.94 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=47.6
Q ss_pred CCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC---------CChhh
Q 025797 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (248)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~---------~~~e~ 126 (248)
++..+.-++..-+... +. . ....+|+|-|||-+|..+++.+.+. ..+||+|.|. .|++.
T Consensus 207 Tg~Gv~~~~~~~~~~~-g~---~-----l~g~~vaIQGfGnVG~~aA~~L~e~---GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETK-GI---D-----IKGKTVAISGFGNVAWGAATKATEL---GAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHc-CC---C-----cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCceEECCCCCCHHH
Confidence 4445655655554332 11 1 1346899999999999999988764 4689997653 35666
Q ss_pred hhhhccccCcCc
Q 025797 127 ASHLLKYDSLLG 138 (248)
Q Consensus 127 ~ayLLkYDStHG 138 (248)
+.+|++|-..+|
T Consensus 275 l~~l~~~k~~~~ 286 (445)
T PRK14030 275 IDYMLELRASGN 286 (445)
T ss_pred HHHHHHHHHhcC
Confidence 778888855554
No 86
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=84.73 E-value=1.3 Score=42.45 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.8
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
|.++|.|+|||.+|+..+|.++.+ +.+++|..=+
T Consensus 1 m~~~vvqyGtG~vGv~air~l~ak--pe~elvgawv 34 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAK--PELELVGAWV 34 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcC--CCCceEEEEe
Confidence 457999999999999999999865 3566665433
No 87
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.57 E-value=1.3 Score=42.98 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=24.5
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
..+|||.|||+||+.++|.+... .+++++.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~---G~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL---GIKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999987543 46877654
No 88
>PLN03139 formate dehydrogenase; Provisional
Probab=84.43 E-value=1.2 Score=43.31 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=24.5
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
-.+|||.||||||+.++|.+... .+++++.+
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d 229 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHD 229 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC---CCEEEEEC
Confidence 35899999999999999987642 46777654
No 89
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=83.99 E-value=3.5 Score=40.28 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=61.4
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCce-EEEecCC---cE--EECCeEE
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKAD-VKIVDNE---TI--SVDGKLI 159 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~-V~v~e~~---~L--~inGk~I 159 (248)
.+|+|-| -|-||++.+.++...+ .+++|+++--..+.+.+.-+.+- |... |-+.++. .| ...+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~------f~p~~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQARE------FRPKYVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHH------hCCCEEEEcCHHHHHHHHHhhccCCc
Confidence 4899999 9999999998765433 36899999743344444433321 2212 2221110 00 0112224
Q ss_pred EEEecCC-CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE
Q 025797 160 KVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (248)
Q Consensus 160 ~v~~~~d-P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII 206 (248)
+++...+ ..++ -..-.+|+||++++-+...+-.-.=|++| |+|.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 4554432 2221 11225899999998886665555556677 55655
No 90
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=83.61 E-value=1.8 Score=35.95 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=22.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.||++.|+|++|+.++|.+... ..++.+-|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT---TTEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhc---CCeEEeec
Confidence 5899999999999999988753 46776655
No 91
>PLN02256 arogenate dehydrogenase
Probab=83.48 E-value=2.4 Score=39.54 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=26.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
++++|+|.|+|.||..+++.+... ..++++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEECc
Confidence 346899999999999999987643 3577777654
No 92
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=82.94 E-value=5 Score=36.75 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.1
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
|.+||+|.|.|.||..+++.+... + .+|..++
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~-G--~~V~~~~ 32 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAA-G--ADVTLIG 32 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhc-C--CcEEEEe
Confidence 446899999999999999887653 2 4555554
No 93
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.83 E-value=1.8 Score=38.30 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.4
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
|++||+|.|+|.||..+++.+...
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 346899999999999999988753
No 94
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.23 E-value=2 Score=37.40 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=24.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|-|||++|+.++|.+.+. ..+|+ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~---G~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE---GAKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEcC
Confidence 5799999999999999988764 35777 4454
No 95
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=82.11 E-value=1.8 Score=43.30 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=24.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|+|.|||+||+.++|.+... .+++++.+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 5799999999999999887542 468877753
No 96
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.73 E-value=1.8 Score=43.19 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=25.4
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
-.+|+|.|||+||+.++|.+... .++|++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF---GMKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 35799999999999999987542 468887764
No 97
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=81.51 E-value=3.1 Score=40.46 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=55.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE-EEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~-v~~~~ 165 (248)
-.|+|.|+|-+|.....-+..-. --+|++|- . +.+++..-.++--|| - +|.+... +..
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD-~-~~~Kl~~A~~fGAT~-------~--------vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVD-I-NPEKLELAKKFGATH-------F--------VNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcC--CceEEEEe-C-CHHHHHHHHhcCCce-------e--------ecchhhhhHHH--
Confidence 35999999999987665443221 23667663 2 234444434433222 1 2222110 000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK 211 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk 211 (248)
.-..-++-|+|+++||+|....+..+-.-+..+=+-|||--|..
T Consensus 246 --~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 246 --AIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred --HHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 00112234999999999998877655444444555666665553
No 98
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=81.32 E-value=1.5 Score=41.09 Aligned_cols=94 Identities=33% Similarity=0.443 Sum_probs=49.3
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (248)
Q Consensus 89 V~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP 167 (248)
|.|.|.|++|+.++|.+..+. .+ ++++. |. +.+.+..+.+.- ++ ..+. .......|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~--~~~~v~va-~r-~~~~~~~~~~~~--~~---~~~~-------------~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG--PFEEVTVA-DR-NPEKAERLAEKL--LG---DRVE-------------AVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT--CE-EEEEE-ES-SHHHHHHHHT----TT---TTEE-------------EEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCC--CCCcEEEE-EC-CHHHHHHHHhhc--cc---ccee-------------EEEEecCCH
Confidence 688999999999999988653 34 44433 33 334443333211 01 1111 111123334
Q ss_pred CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEE
Q 025797 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 204 (248)
Q Consensus 168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKV 204 (248)
+.+.=--.+.|+||.|.|-|....-++.-++.|+.=|
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYV 95 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCee
Confidence 3322112367999999999966666677777777644
No 99
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.52 E-value=2.9 Score=36.40 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=26.5
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~ 121 (248)
.+||+|.|.|++|+.+++.+.......++ +++.++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 46899999999999999987754222354 6667654
No 100
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=79.50 E-value=2.7 Score=40.67 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=24.3
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
..+|||.|+|+||+.++|.+... .+++++.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~---G~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL---GWKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC---CCEEEEEC
Confidence 35799999999999999987643 46776654
No 101
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=79.46 E-value=2.6 Score=40.60 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=26.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|.|+|+||+.+++.+.. ..++|++.+++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d---~G~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRD---SGVEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHH---CcCEEEEEECc
Confidence 479999999999999998864 35788888765
No 102
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.21 E-value=2.8 Score=38.76 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=25.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|-|+|+||+.+++.+... ..+|.++|-.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~---G~~V~v~~R~ 183 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL---GARVFVGARS 183 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 4899999999999999988754 2477766643
No 103
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.04 E-value=2.9 Score=40.47 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=41.4
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhh---hhhhccc--cCcCcccC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN---ASHLLKY--DSLLGTFK 141 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~---~ayLLkY--DStHGkf~ 141 (248)
+++|+||-|.|+|+|-++|++...+....+||+|-|+ +++. .|-=+++ =..||.|.
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syE 65 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYE 65 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCCCCccccCHH
Confidence 6799999999999999999988665567899999998 3333 3333334 34566664
No 104
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.62 E-value=1.3 Score=35.77 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=52.1
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccc-cCcCcccCceEEEecCCcEEEC-CeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKY-DSLLGTFKADVKIVDNETISVD-GKLIKVVS 163 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkY-DStHGkf~g~V~v~e~~~L~in-Gk~I~v~~ 163 (248)
||.|-|.|.+|-.+++.+... .+.-+.|-|. ...+.+..-+-| .+.-|+.+.++-.+ .--.+| +-.|..+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~---Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~--~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS---GVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR--RLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHH--HHHHHCCCcEEEEEe
Confidence 589999999999999887642 3433334443 233333333333 23346554433321 101122 22333333
Q ss_pred cC-CCCCCCCCCCcccEEecCcccccCchhhhHH
Q 025797 164 NR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH 196 (248)
Q Consensus 164 ~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~H 196 (248)
.. ++.+...--.+.|+||+|+..+..+..+...
T Consensus 76 ~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~ 109 (143)
T cd01483 76 EGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRA 109 (143)
T ss_pred eecChhhHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 22 1111111113689999999987665544443
No 105
>PRK08605 D-lactate dehydrogenase; Validated
Probab=78.46 E-value=2.9 Score=39.29 Aligned_cols=32 Identities=38% Similarity=0.490 Sum_probs=24.0
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
-.+|+|.|+|+||+.+++.+.. .-.++|++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~--~~g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK--GYGSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCCEEEEEC
Confidence 3589999999999999988732 1246777654
No 106
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.35 E-value=2.9 Score=37.62 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=23.7
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+||+|.|+|.+|..+++.+... ..++++.|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~---g~~v~~~d 32 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA---GYSLVVYD 32 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC---CCeEEEEc
Confidence 46899999999999998887653 35666554
No 107
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.17 E-value=3 Score=41.81 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=23.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|+|.|||+|||.+++.+... ..+|++++
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~---Ga~ViV~e 284 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF---GARVVVTE 284 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 5799999999999999888654 35766654
No 108
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=77.51 E-value=1.8 Score=41.65 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.5
Q ss_pred ceeeEEEeCCChhhHHHHHHHh
Q 025797 85 AKLKVAINGFGRIGRNFLRCWH 106 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~ 106 (248)
+--+|+|.||||||..+++-+.
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~ 182 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLK 182 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhh
Confidence 4468999999999999997654
No 109
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=77.37 E-value=3.1 Score=36.96 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=24.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+++.|.|.||.|+.++|.+.+. .-++++|-+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~ 31 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE---GHNVVLIDR 31 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC---CCceEEEEc
Confidence 4799999999999999998764 246666643
No 110
>PLN02700 homoserine dehydrogenase family protein
Probab=77.20 E-value=4.2 Score=39.60 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=28.6
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~------~~~l~iVaIND~ 121 (248)
++++|+|-|||-||+.+++.+..+. +-+++|++|-|.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 4589999999999999999865432 234788888664
No 111
>PLN02712 arogenate dehydrogenase
Probab=77.18 E-value=3.2 Score=42.92 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+++||+|.|+|+||+.+++.+... ..+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~---G~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ---GHTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC---cCEEEEEECC
Confidence 457999999999999999988653 3578877655
No 112
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.17 E-value=12 Score=34.11 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=51.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|.|-+|.+.+.++..+ .. +|+++- . +.+.+..+.++ |. +..+.. ++..+ .+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~---G~~~Vi~~~-~-~~~~~~~a~~l----Ga-~~vi~~-~~~~~----------~~- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL---GAAEIVCAD-V-SPRSLSLAREM----GA-DKLVNP-QNDDL----------DH- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEEe-C-CHHHHHHHHHc----CC-cEEecC-CcccH----------HH-
Confidence 3699999999999988877653 24 344442 2 22333333322 31 111111 11000 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
-.. .+ -++|+|+||+|.-...+.+-..|+.|.+=|++..
T Consensus 229 ~~~--~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 229 YKA--EK--GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred Hhc--cC--CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 000 01 1589999999964444556677777766555544
No 113
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=76.54 E-value=13 Score=34.07 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=53.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhhhccccCcCcccCceEEEe-cCCcEEECCeEEEEEec
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSN 164 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ayLLkYDStHGkf~g~V~v~-e~~~L~inGk~I~v~~~ 164 (248)
-+|.|.|.|-||.+.+.++... ..+++++.-. .+.+.+..+.++ | .+. ++ .++.+ .+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~---G~~vi~~~~~~~~~~~~~~~~~~----G---a~~-v~~~~~~~----------~~ 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR---GFEVYVLNRRDPPDPKADIVEEL----G---ATY-VNSSKTPV----------AE 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHc----C---CEE-ecCCccch----------hh
Confidence 3699999999999988776543 2467766531 123333322221 2 121 11 11000 00
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.. .+ .|+|+||||+|.-...+.+-..++.|.+=|++..+.
T Consensus 233 ---~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 233 ---VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred ---hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCC
Confidence 00 12 378999999996434455566777766555555554
No 114
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=75.87 E-value=1.3 Score=34.56 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=21.3
Q ss_pred CCChhhHHHHHHHhhCCCC-CeEEEEEeCC
Q 025797 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDS 121 (248)
Q Consensus 93 GFGRIGRlvlR~~~~~~~~-~l~iVaIND~ 121 (248)
|||.||+.+++.+.+.... ++++++|-+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~ 30 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADR 30 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEES
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEEC
Confidence 8999999999998765322 6899988765
No 115
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.74 E-value=7.5 Score=34.49 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=53.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-||.+.++++-.+ ..+ |+++ +. +.+.+..+.++ |- +..+ +-+.. ..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~---G~~~Vi~~-~~-~~~r~~~a~~~----Ga---~~~i--------~~~~~----~~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAA---GAARVVAA-DP-SPDRRELALSF----GA---TALA--------EPEVL----AE 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEE-CC-CHHHHHHHHHc----CC---cEec--------Cchhh----HH
Confidence 3689999999999988877543 344 6666 33 22333333222 21 1111 10000 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
.-.++.. ..|+|+|+||+|.=...+.+-..++.|.+-|++..+
T Consensus 178 ~~~~~~~-~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 178 RQGGLQN-GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred HHHHHhC-CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccC
Confidence 0000111 237999999999654455666777777766666544
No 116
>PLN02494 adenosylhomocysteinase
Probab=75.36 E-value=4 Score=41.02 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=24.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|+|.|+|+||+.+++.+... ..+|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~---Ga~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA---GARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 4799999999999999987654 35777664
No 117
>PLN02712 arogenate dehydrogenase
Probab=75.33 E-value=4.1 Score=42.13 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=26.6
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+++|+|.|+|+||+.+++.+... ..+|++++..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~---G~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ---GHTVLAHSRS 84 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 346899999999999999987653 3677777654
No 118
>PRK09414 glutamate dehydrogenase; Provisional
Probab=75.32 E-value=4.2 Score=40.39 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=28.7
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+..+|+|-|||-+|+.+++.+.+. ..+||+|.|
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~---GakVVavsD 263 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQL---GAKVVTCSD 263 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEc
Confidence 347999999999999999998764 479999988
No 119
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=75.23 E-value=6.7 Score=35.38 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=26.7
Q ss_pred ceeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~ 121 (248)
+++||||.|.|.|+. ..++.+....+. +++|+|-|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~ 38 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDR 38 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecC
Confidence 578999999997775 466666543211 799999877
No 120
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.23 E-value=3 Score=37.56 Aligned_cols=105 Identities=15% Similarity=0.099 Sum_probs=53.7
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhh-hhccccCcCcccCceEEEecCCcEEECC-eEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNAS-HLLKYDSLLGTFKADVKIVDNETISVDG-KLIKV 161 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~a-yLLkYDStHGkf~g~V~v~e~~~L~inG-k~I~v 161 (248)
..+|.|-|.|-+|-.++..+... .+.-+.+-|. .+...+. +++-..++-|+.+.++..+ .-..+|- -.|..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~---GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~--~l~~inP~~~V~~ 85 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS---GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAE--RIRDINPECEVDA 85 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHH--HHHHHCCCcEEEE
Confidence 35799999999999998877532 3423333343 2222222 2333356678766554421 1111332 12222
Q ss_pred EecC-CCCCCC-CCCCcccEEecCcccccCchhhhH
Q 025797 162 VSNR-DPLQLP-WAELGIDIVIEGTGVFVDGPGAGK 195 (248)
Q Consensus 162 ~~~~-dP~~i~-W~~~GidiVVE~TG~F~~~e~a~~ 195 (248)
+... +|++++ +-..+.|+||+|+..+..+..+..
T Consensus 86 ~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~ 121 (231)
T cd00755 86 VEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIA 121 (231)
T ss_pred eeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHH
Confidence 2211 122111 112358999999988765544433
No 121
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=74.20 E-value=9.2 Score=35.07 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=16.3
Q ss_pred eeEEEeCCChhhHHHHHHHh
Q 025797 87 LKVAINGFGRIGRNFLRCWH 106 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~ 106 (248)
-+|.|.|.|-||.+++.++-
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~ 184 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLK 184 (341)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 36999999999998776553
No 122
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=74.01 E-value=15 Score=32.66 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=54.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|-|.+|..+++.+..+ ..+++++-+.. +....+-++ |- +..+.. +. .
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~---g~~v~~~~~~~--~~~~~~~~~----g~-~~~~~~--~~---------------~ 221 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ---GAEVFAFTRSG--EHQELAREL----GA-DWAGDS--DD---------------L 221 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEcCCh--HHHHHHHHh----CC-cEEecc--Cc---------------c
Confidence 3688899999999988876653 36777775442 233322222 21 111110 00 0
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
+ +.|+|++++++|.....+.+..||..|..-|++.
T Consensus 222 ~------~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 222 P------PEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred C------CCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc
Confidence 1 2378999999887767778888998877666554
No 123
>PLN02688 pyrroline-5-carboxylate reductase
Probab=73.94 E-value=7.3 Score=34.44 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCC-CCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~-~~l~iVaIND~ 121 (248)
+||++.|+|.+|..++|.+..... ...++++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999998876421 23377777555
No 124
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.79 E-value=5.9 Score=30.29 Aligned_cols=29 Identities=41% Similarity=0.700 Sum_probs=21.9
Q ss_pred EEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 89 V~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
|.|-|+|++|+.+++.+.+. ..+++.|-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEEC
Confidence 67899999999999998763 356776644
No 125
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=73.75 E-value=4.5 Score=36.58 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=23.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+||+|.|.|.||..+++.+... ..+|.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~---g~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL---GHTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC---CCEEEEEE
Confidence 3799999999999999987653 35666664
No 126
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=73.11 E-value=2.3 Score=41.53 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.7
Q ss_pred eEEEeCCChhhHHHHHHHhh
Q 025797 88 KVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~ 107 (248)
.+||.||||||+.+++++-.
T Consensus 148 TLgvlG~GrIGseVA~r~k~ 167 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKA 167 (406)
T ss_pred EEEEeecccchHHHHHHHHh
Confidence 59999999999999998753
No 127
>PRK08507 prephenate dehydrogenase; Validated
Probab=72.67 E-value=5.7 Score=35.67 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=23.5
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
||+|.|+|.||..+++.+... +...++++++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-g~~~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-GLISKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCCEEEEEc
Confidence 799999999999999988653 2234666554
No 128
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=72.50 E-value=5.8 Score=36.85 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
..+|+|.|+|-||+.++|.+-++ +..+.+..+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDR 36 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc-CCeEEEEeecC
Confidence 46899999999999999987653 33345554433
No 129
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=72.20 E-value=5.1 Score=39.27 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
-+|+|.|+|.||+.+++.+... ..+|+++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~---Ga~ViV~ 224 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM---GARVIVT 224 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC---cCEEEEE
Confidence 4799999999999999987643 3576665
No 130
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=71.69 E-value=13 Score=34.36 Aligned_cols=98 Identities=22% Similarity=0.225 Sum_probs=53.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-||.+++.++..+ .. +|+++ +. +.+.+..+.++ |- +..+ +-. +.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~---G~~~Vi~~-~~-~~~r~~~a~~~----Ga-~~~i----------~~~------~~ 246 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAA---GASQVVAV-DL-NEDKLALAREL----GA-TATV----------NAG------DP 246 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCcEEEE-cC-CHHHHHHHHHc----CC-ceEe----------CCC------ch
Confidence 3699999999999888877543 24 35555 22 33444433332 21 1111 100 00
Q ss_pred CC-CCC-CCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 166 DP-LQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 166 dP-~~i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
++ +.+ ....-|+|+||||+|.-...+.+-..++.|.+=|++..++
T Consensus 247 ~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~ 293 (371)
T cd08281 247 NAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPD 293 (371)
T ss_pred hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCC
Confidence 10 000 0111279999999996545556667777777666665553
No 131
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.98 E-value=6.2 Score=35.01 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=23.8
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
||+|.|+|+||+.+++.+... +..+..+.+-+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-g~~~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-PADVSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-CCChheEEEECC
Confidence 799999999999999988754 223433444444
No 132
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.97 E-value=16 Score=33.90 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=49.6
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP 167 (248)
+|.|.|-|-||.+++.++-.. ..+++++-...+ +....+.+ +|- +-. +|.+ ++
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~---Ga~vi~~~~~~~-~~~~~~~~----~Ga---~~v--------i~~~--------~~ 238 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAF---GLKVTVISSSSN-KEDEAINR----LGA---DSF--------LVST--------DP 238 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCcc-hhhhHHHh----CCC---cEE--------EcCC--------CH
Confidence 689999999999988876543 245665533211 11111111 121 111 1110 01
Q ss_pred CCC-CCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 168 LQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 168 ~~i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
+.+ .... |+|+|||++|.-.+.+.+...++.|.+=|++..+
T Consensus 239 ~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 239 EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP 280 (360)
T ss_pred HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence 000 0111 6899999999533344566777777666666544
No 133
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=70.02 E-value=4.8 Score=33.24 Aligned_cols=44 Identities=30% Similarity=0.454 Sum_probs=29.0
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhc
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLL 131 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLL 131 (248)
..+||+|.|.||.|..+.|++... ..+|+.|-.. ...+.++.++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a---g~~v~~v~srs~~sa~~a~~~~ 54 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA---GHEVVGVYSRSPASAERAAAFI 54 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT---TSEEEEESSCHH-HHHHHHC--
T ss_pred CccEEEEECCCHHHHHHHHHHHHC---CCeEEEEEeCCccccccccccc
Confidence 458999999999999999998763 3677777443 3445555443
No 134
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=69.96 E-value=20 Score=32.26 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=53.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-||.++++.+... ..+ ++++... .+....+.++ |- +.. +|-+. .
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~---G~~~vi~~~~~--~~~~~~~~~~----ga---~~~--------i~~~~------~ 218 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL---GAEDVIGVDPS--PERLELAKAL----GA---DFV--------INSGQ------D 218 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECCC--HHHHHHHHHh----CC---CEE--------EcCCc------c
Confidence 4789999999999988877543 244 6665322 2333333222 21 111 11100 0
Q ss_pred CCCCC-CC-CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQL-PW-AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i-~W-~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
+++.+ +. ...|+|+|+||+|.-...+.+..+|+.|.+-|++..+
T Consensus 219 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 219 DVQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred hHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence 01000 01 1237999999999755445556778877766666554
No 135
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.47 E-value=22 Score=34.38 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=23.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|.|.|.|.+|+.+++.+..+ ..+++.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~---G~~V~~~d 46 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL---GARVTVVD 46 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEe
Confidence 4799999999999999988754 35655553
No 136
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=68.96 E-value=7 Score=35.69 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=23.8
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
||+|.|+|++|..++|.+.+. ..++++.|-
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~---g~~v~v~dr 31 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG---GHEVVGYDR 31 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC---CCeEEEEEC
Confidence 799999999999999988753 356666554
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=68.70 E-value=7.6 Score=35.91 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=25.2
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
..||.|-|+|++|+.+++.+... ..+|.+++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL---GANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECC
Confidence 35899999999999999988754 2466666543
No 138
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.36 E-value=7.8 Score=35.51 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=24.3
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
++||+|.|.|.+|+.+.+.+... ..+|...|-
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~---G~~V~~~~r 35 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN---GHRVRVWSR 35 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC---CCEEEEEeC
Confidence 46899999999999999988653 245555553
No 139
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.43 E-value=11 Score=34.28 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=29.6
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCC-CCeEEEEEeCCCChhhhhhhcc
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLK 132 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~-~~l~iVaIND~~~~e~~ayLLk 132 (248)
..||+|.|+|.+|..+++.+....- ..-++.+.| + +.+.+..+.+
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~-r-~~~~~~~l~~ 47 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD-L-NVSNLKNASD 47 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC-C-CHHHHHHHHH
Confidence 4589999999999999999886421 123565554 3 3344444443
No 140
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.33 E-value=18 Score=33.59 Aligned_cols=124 Identities=27% Similarity=0.260 Sum_probs=71.8
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCC--eEEEEEeCC--CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSP--LDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~--l~iVaIND~--~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~ 160 (248)
.+.||+|.|-|-||--++--.+.. +.. +...+=-|| .++...+. |--.+||--.. |
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~-g~~le~~~mvgidp~sdglaraar-lgv~tt~egv~--------------~---- 62 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRH-GQHLEMAVMVGIDPQSDGLARAAR-LGVATTHEGVI--------------G---- 62 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhc-CCcccceeEEccCCCccHHHHHHh-cCCcchhhHHH--------------H----
Confidence 357999999999998655333322 222 333333455 34555543 33333331111 1
Q ss_pred EEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeEEeecCCCCCCCC-CCeEEeec
Q 025797 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHE-VANIVRSW 238 (248)
Q Consensus 161 v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~ptiV~GVN~~~y~~~-~~~IISnA 238 (248)
+. +-|+ -.++|+|+|.|..+...+.+.+.-++|.+-+=+| |.. --|-+|--||-+...+. .-++|.+.
T Consensus 63 ll--~~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paa--igp~vvp~~n~~eh~~a~nvnmvtcg 131 (310)
T COG4569 63 LL--NMPE-----FADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAA--IGPYVVPVVNLEEHVDALNVNMVTCG 131 (310)
T ss_pred HH--hCCC-----CCCcceEEeccccchhhcchHhHHhcCCceeecc-hhc--cCCeeccccchHHhcCCCCcceEeec
Confidence 11 1132 2357899999999988888887778899877775 542 23777778886654321 13455543
No 141
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.13 E-value=15 Score=40.29 Aligned_cols=95 Identities=20% Similarity=0.100 Sum_probs=53.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCC----------CeEEEEEeCCCChhhhhhhcc-ccCcCcccCceEEEecCCcEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDS----------PLDVVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNETISV 154 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~----------~l~iVaIND~~~~e~~ayLLk-YDStHGkf~g~V~v~e~~~L~i 154 (248)
+.||+|-|.|+||+.+++.+....+. ...+|+|-|+ +++.+..+-+ |. + . ..+.++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~~~---~-~-~~v~lD------- 635 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-YLKDAKETVEGIE---N-A-EAVQLD------- 635 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-CHHHHHHHHHhcC---C-C-ceEEee-------
Confidence 45899999999999999988754221 1236788887 2333322221 10 0 0 012221
Q ss_pred CCeEEEEEecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCC
Q 025797 155 DGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (248)
Q Consensus 155 nGk~I~v~~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAK 202 (248)
..|++++.=--.++|+||-|+.-+...+-+..-+++|..
T Consensus 636 ---------v~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 636 ---------VSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred ---------cCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 122332211002588888888887777777776776654
No 142
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=65.60 E-value=9 Score=35.01 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=23.8
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+|+|.|+|++|..+++.+... ..++++.|-
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~---g~~v~v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED---GHEVVGYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEEEEEC
Confidence 799999999999999887753 357766653
No 143
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=65.43 E-value=11 Score=37.19 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=23.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|+|.|+|.||+.+++.+... ..+|++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~---Ga~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL---GARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEc
Confidence 3799999999999999887653 34666553
No 144
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.41 E-value=8.2 Score=36.56 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
++|.|.|+|++|+.+++.+..+ ..++++|.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~---g~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE---NNDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEEEEE
Confidence 3799999999999999987653 35677774
No 145
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=65.37 E-value=7.4 Score=41.33 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=29.5
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC-------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~-------~~~l~iVaIND~ 121 (248)
+.++|+|-|||-+|+.++|.+.++. +-+++++.|-+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 5699999999999999999876542 346788888553
No 146
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=65.36 E-value=7.5 Score=35.07 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=23.1
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
||+|.|+|.+|..+++.+... ..+|++.|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~---G~~V~~~d 29 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA---GYQLHVTT 29 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC---CCeEEEEc
Confidence 589999999999999887753 36776664
No 147
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=65.22 E-value=12 Score=34.32 Aligned_cols=102 Identities=20% Similarity=0.140 Sum_probs=59.9
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC------C--CCeEEEEEeCC-----CChhhhhhhccccCcCcccCceEEEecCCc
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNET 151 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~------~--~~l~iVaIND~-----~~~e~~ayLLkYDStHGkf~g~V~v~e~~~ 151 (248)
.+.||.|-|.|-+|-.++..+.... + ..++++.| |. .++..- +| +++.-|+.+.++.+. ..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lv-D~D~Ve~sNLnRQ--lf-~~~dVG~~Ka~v~~~--ri 83 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVY-DDDTVSEANVGRQ--AF-YPADVGQNKAIVLVN--RL 83 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEE-CCCEEccchhhcc--cC-ChhHCCcHHHHHHHH--HH
Confidence 4579999999999999888765321 1 12455444 43 233332 33 445678888776542 11
Q ss_pred EEECCeEEEEEecC-CCCCCCCCCCcccEEecCcccccCchhhhH
Q 025797 152 ISVDGKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195 (248)
Q Consensus 152 L~inGk~I~v~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~ 195 (248)
--+++..|....++ ++++. + .+.|+||+|+.-+..+..+..
T Consensus 84 ~~~~~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~ 125 (244)
T TIGR03736 84 NQAMGTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILR 125 (244)
T ss_pred HhccCceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHH
Confidence 11335445554433 23222 2 368999999998887755533
No 148
>PTZ00117 malate dehydrogenase; Provisional
Probab=65.19 E-value=15 Score=34.29 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
..||+|-|-|.+|..++-.+..+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~ 27 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQK 27 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC
Confidence 46999999999999988766543
No 149
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=64.97 E-value=6.2 Score=40.29 Aligned_cols=29 Identities=31% Similarity=0.483 Sum_probs=24.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
-+|.|-||||+|+.++|.+.++ ++++++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~---g~~vvvI 429 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS---GVKMTVL 429 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC---CCCEEEE
Confidence 5799999999999999988753 4677777
No 150
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=64.95 E-value=9.3 Score=34.98 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=23.6
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
||+|.|+|++|..+++.+... ..++++.|-
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~---g~~V~~~dr 31 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR---GHDCVGYDH 31 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC---CCEEEEEEC
Confidence 799999999999999987653 367666543
No 151
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=64.16 E-value=40 Score=30.45 Aligned_cols=95 Identities=24% Similarity=0.306 Sum_probs=50.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-.|.|.|.|.+|+.+++.+... ..+++++-.. .+...++-++ | .+-.+ +.+ +
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~---G~~v~~~~~~--~~~~~~~~~~----g---~~~vi--------~~~--------~ 222 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL---GAEVTAFSRS--PSKKEDALKL----G---ADEFI--------ATK--------D 222 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCeEEEEcCC--HHHHHHHHHc----C---CcEEe--------cCc--------c
Confidence 3688899999999888776543 3465555322 2233333222 2 11111 100 0
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
+.......-++|+|+||+|.=...+.+..+|+.+.+-+.+..+
T Consensus 223 ~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~ 265 (337)
T cd05283 223 PEAMKKAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAP 265 (337)
T ss_pred hhhhhhccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEecc
Confidence 0000001247999999999643356666777765554555433
No 152
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.11 E-value=11 Score=34.33 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=23.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|+|.|+|.||+.+++.+... +...++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEE
Confidence 5899999999999999987643 2113555443
No 153
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=63.85 E-value=16 Score=35.02 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=35.1
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD 134 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD 134 (248)
.+|-|-| -|-||.-+++.++.+ +..++ -.|+|+.+.+...||.+.+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r-GY~V~-gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR-GYTVR-GTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC-CCEEE-EEEcCcchhhhHHHHHhcc
Confidence 4566666 488999999999886 33344 3588888888888998887
No 154
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=63.50 E-value=5.7 Score=42.02 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.2
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~------~~~l~iVaIND~ 121 (248)
++++|+|-|||-+|+.++|.+.++. +-+++|++|-+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 6789999999999999999876432 235788888653
No 155
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=63.39 E-value=9.3 Score=38.56 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.6
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
.+-||.|.|.|.||.+.++.+...
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l 187 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL 187 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC
Confidence 357999999999999999988654
No 156
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=63.29 E-value=13 Score=37.24 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=45.3
Q ss_pred cCCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC---------Chh
Q 025797 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVK 125 (248)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~---------~~e 125 (248)
.++-.+.-++..-+... + .. .+..+|+|-|||-.|..+++.+.+. ..++|+|.|.. |.+
T Consensus 215 ATG~Gv~~~~~~~l~~~-~---~~-----l~Gk~VaVqG~GnVg~~aa~~L~e~---GakVVavSD~~G~iy~~~Gld~~ 282 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL-N---DS-----LEGKTVVVSGSGNVAQYAVEKLLQL---GAKVLTMSDSDGYIHEPNGFTKE 282 (454)
T ss_pred ccHHHHHHHHHHHHHHc-C---CC-----cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEEcCCCcEECCCCCCHH
Confidence 34445666666655432 1 11 1336899999999999999998864 46899998862 456
Q ss_pred hhhhhcccc
Q 025797 126 NASHLLKYD 134 (248)
Q Consensus 126 ~~ayLLkYD 134 (248)
.+.+|+++-
T Consensus 283 ~l~~l~~~k 291 (454)
T PTZ00079 283 KLAYLMDLK 291 (454)
T ss_pred HHHHHHHHH
Confidence 666666543
No 157
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=62.78 E-value=17 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=17.6
Q ss_pred eeEEEeCCChhhHHHHHHHhh
Q 025797 87 LKVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~ 107 (248)
.||+|.|-|.+|..++-.+..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~ 27 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL 27 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 589999999999988776543
No 158
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=62.65 E-value=11 Score=34.24 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=26.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|+|-|||-+|+.+++.+.+. ...+|+|-|
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~---Ga~vv~vsD 63 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAEL---GAKVVAVSD 63 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT---TEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCEEEEEec
Confidence 6899999999999999999875 478888844
No 159
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=62.25 E-value=50 Score=29.27 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=51.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|-|-+|..+++++..+ ..+++++-. ..+...++.++ |. +..+.. ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~---G~~vi~~~~--~~~~~~~~~~~----g~---~~~~~~----------------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT---GPDVVLVGR--HSEKLALARRL----GV---ETVLPD----------------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEcC--CHHHHHHHHHc----CC---cEEeCc----------------cc
Confidence 4689999999999998887654 356655532 23455544443 31 111110 00
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII 206 (248)
+ .++ .++|+|+||+|.=...+.+..+|+.+.+-|+.
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 0 223 37999999998633345566778776655543
No 160
>PLN02740 Alcohol dehydrogenase-like
Probab=61.95 E-value=25 Score=32.71 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=51.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|.|.||.++++++..+ .. +|+++- . +.+.+..+-+ +|- +..|...+.+ . . + .+
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~---G~~~Vi~~~-~-~~~r~~~a~~----~Ga-~~~i~~~~~~-----~-~--~--~~ 259 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARAR---GASKIIGVD-I-NPEKFEKGKE----MGI-TDFINPKDSD-----K-P--V--HE 259 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCcEEEEc-C-ChHHHHHHHH----cCC-cEEEeccccc-----c-h--H--HH
Confidence 3799999999999998887653 24 455552 2 1223322222 231 1111110000 0 0 0 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcC-CCEEEEcCCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG-AKKVIITAPA 210 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~G-AKKVIISAPs 210 (248)
...++. .. |+|+|+||+|.-.....+-..+..| .+-|++..+.
T Consensus 260 ~v~~~~-~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~ 303 (381)
T PLN02740 260 RIREMT-GG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHP 303 (381)
T ss_pred HHHHHh-CC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCC
Confidence 000010 12 7999999999654444544555554 5667776654
No 161
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=61.31 E-value=33 Score=31.62 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=50.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-+|..+++++... .. +++++- . +.+.+..+-++ |- +.. ++-+ +.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~---G~~~Vi~~~-~-~~~~~~~~~~~----ga-~~~----------i~~~------~~ 239 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA---GASRIIGVD-I-NEDKFEKAKEF----GA-TDF----------INPK------DS 239 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEe-C-CHHHHHHHHHc----CC-CcE----------eccc------cc
Confidence 4789999999999988877643 34 455552 2 22334333222 21 111 1100 00
Q ss_pred C---CCCC-CCCCCcccEEecCcccccCchhhhHHHHcC-CCEEEEcCC
Q 025797 166 D---PLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAG-AKKVIITAP 209 (248)
Q Consensus 166 d---P~~i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~G-AKKVIISAP 209 (248)
+ ++.+ .....|+|+|+||+|.-.....+..++..| .+-|++..+
T Consensus 240 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 240 DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred cchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCC
Confidence 0 0000 011247999999999533445566677654 555555544
No 162
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=60.12 E-value=36 Score=31.11 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=53.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|-|-||.+++.++... ..+++++- . +.+.+..+.++ |- +..|...+.. ..+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~---G~~vi~~~-~-~~~~~~~~~~~----Ga-~~~i~~~~~~-------------~~~ 224 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM---GAAVVAID-I-DPEKLEMMKGF----GA-DLTLNPKDKS-------------ARE 224 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEc-C-CHHHHHHHHHh----CC-ceEecCcccc-------------HHH
Confidence 4799999999999988887654 24666652 2 23344433332 21 1111100000 000
Q ss_pred C-CCC-CC-CCCccc----EEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 167 P-LQL-PW-AELGID----IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 167 P-~~i-~W-~~~Gid----iVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
. +.+ .+ ...|+| +|+||+|.=.....+-..|+.|.+=|++..+.
T Consensus 225 ~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~ 275 (349)
T TIGR03201 225 VKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTM 275 (349)
T ss_pred HHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCC
Confidence 0 000 01 123554 89999997544455567787776666665554
No 163
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=59.93 E-value=41 Score=29.07 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|.|-+|..+.+.+... ..+ ++++-. +.+....+-++ |.++..+. ...
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~---g~~~vi~~~~--~~~~~~~~~~~----g~~~~~~~----------~~~------- 152 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAA---GAREVVGVDP--DAARRELAEAL----GPADPVAA----------DTA------- 152 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCcEEEECC--CHHHHHHHHHc----CCCccccc----------cch-------
Confidence 4689999999999988877654 244 665532 22333322333 21111111 000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
. .+...++|+|+||+|.-...+....+|+.+.+-+.+..
T Consensus 153 --~--~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 153 --D--EIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred --h--hhcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEec
Confidence 0 01234799999998864444555667766655555543
No 164
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=59.45 E-value=9.2 Score=38.80 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=25.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+.+|.|-||||+|+.+.|.+.++ +.++++|-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID 430 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLE 430 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEE
Confidence 45799999999999999987653 46777773
No 165
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.27 E-value=40 Score=33.02 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.3
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+|.|.|+|++|+.++|.+..+ ..++. +.|.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~---G~~v~-~~D~ 38 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARH---GARLR-VADT 38 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHC---CCEEE-EEcC
Confidence 699999999999999998764 24544 4554
No 166
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=59.04 E-value=18 Score=33.61 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=25.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCC-CCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~-~~l~iVaIND 120 (248)
.||++.|+|.+|+.+++-++.... ..-+|++.|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence 589999999999999999887531 2245555543
No 167
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=59.02 E-value=12 Score=35.09 Aligned_cols=29 Identities=21% Similarity=0.555 Sum_probs=24.4
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+||.|||+ ||+||.+.++... .++++|+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEee
Confidence 48999996 9999999999654 36999986
No 168
>PRK14031 glutamate dehydrogenase; Provisional
Probab=58.52 E-value=17 Score=36.25 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=43.3
Q ss_pred CCcCHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC---------CChhh
Q 025797 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (248)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~---------~~~e~ 126 (248)
++..+.-++..-+... +. .. +..+|+|-|||-.|...++.+++. .-+||+|.|. .|++.
T Consensus 207 Tg~Gv~~~~~~~~~~~-g~---~l-----~g~rVaVQGfGNVG~~aA~~L~e~---GAkVVaVSD~~G~iy~~~Gld~~~ 274 (444)
T PRK14031 207 TGYGNIYFLMEMLKTK-GT---DL-----KGKVCLVSGSGNVAQYTAEKVLEL---GGKVVTMSDSDGYIYDPDGIDREK 274 (444)
T ss_pred cHHHHHHHHHHHHHhc-CC---Cc-----CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCeEECCCCCCHHH
Confidence 3445555555555433 21 11 336899999999999999988863 4689999882 35555
Q ss_pred hhhhccc
Q 025797 127 ASHLLKY 133 (248)
Q Consensus 127 ~ayLLkY 133 (248)
+.|+.+|
T Consensus 275 l~~~~~~ 281 (444)
T PRK14031 275 LDYIMEL 281 (444)
T ss_pred HHHHHHH
Confidence 6555444
No 169
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=58.42 E-value=16 Score=32.93 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND 120 (248)
+||+|.|.|.+|+.++|.+.... ....++++.|.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 48999999999999999887642 12246666653
No 170
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=57.66 E-value=13 Score=34.48 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=23.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
..+|+|.|.|.||+++++.+.... .-+|+++|-
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g--~~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG--VAEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC--CCEEEEEeC
Confidence 368999999999999999887532 124555553
No 171
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.45 E-value=43 Score=31.85 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=22.9
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+|.|.|.|++|+..+|.+..+ ..+| .+.|.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~---G~~V-~~~d~ 36 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL---GANV-TVNDG 36 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC---CCEE-EEEcC
Confidence 689999999999999988764 2454 44554
No 172
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=57.03 E-value=11 Score=37.50 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=24.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+-+|.|-|+||+||.++|.+.++ +.++++|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId 447 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA---GIPLVVIE 447 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC---CCCEEEEE
Confidence 35799999999999999988654 46777774
No 173
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=56.58 E-value=15 Score=35.06 Aligned_cols=32 Identities=34% Similarity=0.360 Sum_probs=24.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|.|+|.+|+.+++.+... .+++++.+..
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s---G~~Vvv~~r~ 49 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS---GVDVVVGLRE 49 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC---CCEEEEEECC
Confidence 4799999999999999887653 4677665544
No 174
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=56.53 E-value=60 Score=29.83 Aligned_cols=101 Identities=23% Similarity=0.225 Sum_probs=51.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|.|-|-||.++++++-.. .. +++++-.. .+.+.++-++ |. +..+...+. .. .+ .+
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~---G~~~vi~~~~~--~~~~~~~~~~----Ga-~~~i~~~~~------~~--~~--~~ 248 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR---GASRIIGVDLN--PSKFEQAKKF----GV-TEFVNPKDH------DK--PV--QE 248 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC--HHHHHHHHHc----CC-ceEEccccc------ch--hH--HH
Confidence 4789999999999998887643 24 56655322 2344433222 31 111110000 00 00 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcC-CCEEEEcCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG-AKKVIITAP 209 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~G-AKKVIISAP 209 (248)
...++.. -|+|+|+||+|.-.....+-.++..| .+-|++..+
T Consensus 249 ~v~~~~~--~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 249 VIAEMTG--GGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred HHHHHhC--CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcC
Confidence 0001111 27999999998644444455666664 444555544
No 175
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=56.06 E-value=18 Score=31.27 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
|||+|.|.|++|..++-++-+. ..+++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK---GHQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT---TSEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhC---CCEEEEE
Confidence 5899999999998777655442 3666665
No 176
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.70 E-value=44 Score=29.11 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=51.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|.|-+|..+++++... ..+ ++++... .+....+-++ |- + .+ ++ .+
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~---g~~~v~~~~~~--~~~~~~~~~~----g~---~-~~-------~~--------~~ 182 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA---GARRVIAIDRR--PARLALAREL----GA---T-EV-------VT--------DD 182 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC--HHHHHHHHHh----CC---c-eE-------ec--------CC
Confidence 4689999999999999887653 356 6666433 2333322222 21 0 00 11 11
Q ss_pred CC---CCC-CC-CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 166 DP---LQL-PW-AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 166 dP---~~i-~W-~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
.+ ..+ .| ...|+|+++||.|.-...+.+..+|+.+.+-+.++.
T Consensus 183 ~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~ 230 (312)
T cd08269 183 SEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGY 230 (312)
T ss_pred CcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEcc
Confidence 11 000 11 224799999998754344556677776665555543
No 177
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=55.53 E-value=16 Score=34.32 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=24.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|.|+|.||+.+++.+... .+++++.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s---G~~Viv~~~~ 35 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS---GLNVIVGLRK 35 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC---CCeEEEEECc
Confidence 4799999999999999988753 3566665554
No 178
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=55.27 E-value=53 Score=29.03 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=53.3
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-.|.|+| -|-+|..+++++... ..+++++-.. .+....+.++ |- +..+.. .+.. +
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~---G~~vi~~~~s--~~~~~~l~~~----Ga-~~vi~~-~~~~---------~---- 200 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK---GCKVIGCAGS--DDKVAWLKEL----GF-DAVFNY-KTVS---------L---- 200 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC--HHHHHHHHHc----CC-CEEEeC-CCcc---------H----
Confidence 3688998 699999998887653 3566665432 2444444332 32 111110 0000 0
Q ss_pred CCCCC-CCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 166 DPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 166 dP~~i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
.+.+ .+...|+|+|+|++|. ...+.+..+|..+.+-|++.
T Consensus 201 -~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 201 -EEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred -HHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccCCEEEEEc
Confidence 0001 1223489999999997 55566677887776655554
No 179
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=55.16 E-value=35 Score=32.11 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=51.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|.|-|.||.++++++-.+ ..+++++-.. +.+....+-++ |- +.. +|.+.. ..
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~---Ga~Vi~~~~~-~~~~~~~a~~l----Ga---~~~--------i~~~~~-----~~ 235 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF---GLRVTVISRS-SEKEREAIDRL----GA---DSF--------LVTTDS-----QK 235 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc---CCeEEEEeCC-hHHhHHHHHhC----CC---cEE--------EcCcCH-----HH
Confidence 3689999999999988877654 2456655322 11112222122 21 111 111000 00
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
..+ ... |+|+|+||+|.=.....+-..++.|.+=|.+..|.
T Consensus 236 v~~--~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~ 276 (375)
T PLN02178 236 MKE--AVG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPE 276 (375)
T ss_pred HHH--hhC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCC
Confidence 001 111 68999999996433445556666676666666553
No 180
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=54.78 E-value=52 Score=28.86 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=51.1
Q ss_pred eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
.|.|+|. |-+|..+++++... ..+++++-. +.+...++.++ |- +.. ++.+.. ...
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~--~~~~~~~~~~~----g~-~~~----------~~~~~~----~~~ 204 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKL---GYTVVALTG--KEEQADYLKSL----GA-SEV----------LDREDL----LDE 204 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHc---CCEEEEEeC--CHHHHHHHHhc----CC-cEE----------EcchhH----HHH
Confidence 5899997 99999988877653 345554432 23445455433 21 101 111000 000
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
.. -.+..-|+|+|+||+|. ...+.+..++..+..-|.++.
T Consensus 205 ~~-~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 205 SK-KPLLKARWAGAIDTVGG-DVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred HH-HHhcCCCccEEEECCch-HHHHHHHHhhcCCCEEEEEec
Confidence 00 01223478999999987 455666677766555555543
No 181
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=54.57 E-value=7.2 Score=36.12 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=55.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-----CChhhhhhhccccCcCcccCceEEEecCCcEEECC-eEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLI 159 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-----~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inG-k~I 159 (248)
..+|.|-|.|-+|-.++..+... .+.=+.|-|. .+++. +++-..++.|+.+.++..+ .-..+|- -.|
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~---GVg~itLiD~D~V~~sNlnR--Q~~~~~~~vG~~Kve~~~~--rl~~INP~~~V 102 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART---GIGAITLIDMDDVCVTNTNR--QIHALRDNVGLAKAEVMAE--RIRQINPECRV 102 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCEeccccccc--ccccChhhcChHHHHHHHH--HHHhHCCCcEE
Confidence 35899999999999988876542 2322333332 34443 2333345667665544421 1112332 123
Q ss_pred EEEecC-CCCCCC-CCCCcccEEecCcccccCchhhhHHHH
Q 025797 160 KVVSNR-DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQ 198 (248)
Q Consensus 160 ~v~~~~-dP~~i~-W~~~GidiVVE~TG~F~~~e~a~~HL~ 198 (248)
..+.+. +|+++. .-..+.|+||+|++-+..+..+.....
T Consensus 103 ~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~ 143 (268)
T PRK15116 103 TVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCR 143 (268)
T ss_pred EEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHH
Confidence 333221 232211 112368999999998876655554443
No 182
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=54.42 E-value=18 Score=33.27 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=22.7
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
||+|.|.|++|..++|.+... ..++.+.|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~---G~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARA---GHQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHC---CCeEEEEe
Confidence 799999999999999988754 24555444
No 183
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=53.90 E-value=19 Score=34.42 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.3
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+-+|.|.|+|++|+.+++.+... ..+|++++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d 197 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL---GATVTILD 197 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC---CCeEEEEE
Confidence 45799999999999999988754 24666665
No 184
>PRK07680 late competence protein ComER; Validated
Probab=53.87 E-value=28 Score=31.22 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=18.8
Q ss_pred eEEEeCCChhhHHHHHHHhhC
Q 025797 88 KVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~ 108 (248)
+|+|.|.|.+|..+++.+...
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC
Confidence 799999999999999988754
No 185
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=53.72 E-value=19 Score=35.49 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=22.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
-+|+|.|+|.||+.+++.+... ..+++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~---Ga~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ---GARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEE
Confidence 4799999999999999887653 2465554
No 186
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=53.58 E-value=47 Score=30.44 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=50.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-||.+++.++... ..+ ++++... .+....+.++ |. +..+...+ .
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~---G~~~Vi~~~~~--~~~~~~~~~~----Ga-~~~i~~~~----------------~ 231 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA---GASKIIAVDID--DRKLEWAREF----GA-THTVNSSG----------------T 231 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCC--HHHHHHHHHc----CC-ceEEcCCC----------------c
Confidence 4799999999999888876543 343 6655322 2333333222 21 11111000 0
Q ss_pred CC-CCC-CC-CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DP-LQL-PW-AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP-~~i-~W-~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
+. +.+ .. ...|+|+|+||+|.-.....+-..++.|-+=|++..+
T Consensus 232 ~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 232 DPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCC
Confidence 00 000 00 1237999999999643444555566666554555444
No 187
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=53.44 E-value=5 Score=30.99 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=27.4
Q ss_pred CcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 175 ~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.|+|+||||+|.=...+.+...++.|.+-|++..++
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 589999999995445555666667788888887776
No 188
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=53.35 E-value=22 Score=32.21 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=25.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~ 121 (248)
.||+|.|.|.||..+++.+.... -...++++++..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC
Confidence 47999999999999999887542 112467766643
No 189
>PRK06545 prephenate dehydrogenase; Validated
Probab=53.26 E-value=19 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=23.5
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+|+|.|+|.||..+++.+... +..+.++..+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~-G~~v~i~~~~ 32 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA-GPDVFIIGYD 32 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc-CCCeEEEEeC
Confidence 699999999999999988653 3345655543
No 190
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=53.05 E-value=48 Score=30.61 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|-|.||.++++++-.+ ..+++++-+. .+....+++ .+|- +..++..+. ..
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~---G~~vi~~~~~--~~~~~~~~~---~~Ga---~~~i~~~~~-----~~-------- 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM---GHHVTVISSS--DKKREEALE---HLGA---DDYLVSSDA-----AE-------- 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC---CCeEEEEeCC--HHHHHHHHH---hcCC---cEEecCCCh-----HH--------
Confidence 3688999999999988877643 2456655432 222222222 1231 111110000 00
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
..++. .|+|+|+||+|.-...+.+-..++.|.+-|++..+.
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~ 278 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVIN 278 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCC
Confidence 00111 279999999995444455666777777767766553
No 191
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=52.91 E-value=6.1 Score=34.85 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=51.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-----CChhhhhhhccccCcCcccCceEEEecCCcEEECC-eE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KL 158 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-----~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inG-k~ 158 (248)
...+|.|-|.|-+|-.++..+... .+.-+.|-|. .++..-.+ ++.--|+.+.++... .--.+|. -.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~---~~~dvG~~Ka~~a~~--~l~~lnp~v~ 98 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFDVVEPSNLNRQQY---FISQIGMPKVEALKE--NLLEINPFVE 98 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCCEeccccccccEe---ehhhCCChHHHHHHH--HHHHHCCCCE
Confidence 346899999999999999877542 2432333333 23333221 233346544432211 0000111 12
Q ss_pred EEEEecC-CCCCCC--CCCCcccEEecCcccccCchhhhHHH
Q 025797 159 IKVVSNR-DPLQLP--WAELGIDIVIEGTGVFVDGPGAGKHI 197 (248)
Q Consensus 159 I~v~~~~-dP~~i~--W~~~GidiVVE~TG~F~~~e~a~~HL 197 (248)
|..+.++ ++++++ + .+.|+||||+.-+.++..+-..+
T Consensus 99 v~~~~~~i~~~~~~~~~--~~~DvVI~a~D~~~~r~~l~~~~ 138 (212)
T PRK08644 99 IEAHNEKIDEDNIEELF--KDCDIVVEAFDNAETKAMLVETV 138 (212)
T ss_pred EEEEeeecCHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHH
Confidence 2222211 111110 2 26899999999887765444443
No 192
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=52.72 E-value=42 Score=31.13 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=52.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|.||.+.+.++-.. .. +|+++- . +.+.+..+.++ |- +..+...+. ..
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~---G~~~Vi~~~-~-~~~~~~~a~~~----Ga-~~~i~~~~~--------------~~ 242 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMA---KASRIIAID-I-NPAKFELAKKL----GA-TDCVNPNDY--------------DK 242 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEc-C-CHHHHHHHHHh----CC-CeEEccccc--------------ch
Confidence 3799999999999988877543 24 566552 2 23444444443 21 111110000 00
Q ss_pred CC-CCC-CCCCCcccEEecCcccccCchhhhHHHHcC-CCEEEEcCCC
Q 025797 166 DP-LQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAG-AKKVIITAPA 210 (248)
Q Consensus 166 dP-~~i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~G-AKKVIISAPs 210 (248)
+. +.+ ....-|+|+||||+|.=.....+-..++.| .+-|++..+.
T Consensus 243 ~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~ 290 (368)
T TIGR02818 243 PIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAG 290 (368)
T ss_pred hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccC
Confidence 00 000 011127999999999633344455566554 5555666553
No 193
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=52.47 E-value=65 Score=29.71 Aligned_cols=98 Identities=17% Similarity=0.088 Sum_probs=52.0
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhc-cccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL-KYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLL-kYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
-+|.|+|- |-+|.+++.++-.+ ..+++++-. +.+....+. ++ |- +..+ |.+ .+
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~---G~~Vi~~~~--~~~k~~~~~~~l----Ga-~~vi----------~~~-----~~ 214 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH---GCYVVGSAG--SSQKVDLLKNKL----GF-DEAF----------NYK-----EE 214 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEcC--CHHHHHHHHHhc----CC-CEEE----------ECC-----Cc
Confidence 36999999 99999988877543 356665532 223333332 22 21 1111 100 00
Q ss_pred CCCC-CC-CCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 165 RDPL-QL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 165 ~dP~-~i-~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.+.. .+ .+..-|+|+|+||+|. ...+.+-.+|+.|.+=|++..++
T Consensus 215 ~~~~~~i~~~~~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G~~~ 261 (348)
T PLN03154 215 PDLDAALKRYFPEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVCGMVS 261 (348)
T ss_pred ccHHHHHHHHCCCCcEEEEECCCH-HHHHHHHHHhccCCEEEEECccc
Confidence 0000 00 0112389999999996 34455566777776666665443
No 194
>PLN02827 Alcohol dehydrogenase-like
Probab=52.33 E-value=62 Score=30.29 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
-+|.|+|-|-||.+++.++..+
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~ 216 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR 216 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4789999999999988876543
No 195
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=52.27 E-value=1.5 Score=35.27 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=54.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhh--hccccCcCcccCceEEEecCCcEEEC-CeEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVD-GKLIKV 161 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ay--LLkYDStHGkf~g~V~v~e~~~L~in-Gk~I~v 161 (248)
.||.|-|.|.+|-.++..+... .+.-+.|-|. ...+.+.. |+..+. -|+.+.++-.. .-..+| +-.|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~---Gv~~i~lvD~d~v~~~nl~r~~~~~~~~-vG~~Ka~~~~~--~l~~~np~~~v~~ 76 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS---GVGKITLVDDDIVEPSNLNRQFLYTEED-VGKNKAEAAKE--RLQEINPDVEVEA 76 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH---TTSEEEEEESSBB-GGGCCTCTTS-GGG-TTSBHHHHHHH--HHHHHSTTSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHh---CCCceeecCCcceeeccccccccccccc-chhHHHHHHHH--HHHHhcCceeeee
Confidence 4899999999999999876532 3433344444 34444444 223322 37665443321 111122 223444
Q ss_pred EecCC-CCCCCCCC-CcccEEecCcccccCchhhhHHHH
Q 025797 162 VSNRD-PLQLPWAE-LGIDIVIEGTGVFVDGPGAGKHIQ 198 (248)
Q Consensus 162 ~~~~d-P~~i~W~~-~GidiVVE~TG~F~~~e~a~~HL~ 198 (248)
+..+= +++ .+.. .+.|+||+|+.-+..+..+.....
T Consensus 77 ~~~~~~~~~-~~~~~~~~d~vi~~~d~~~~~~~l~~~~~ 114 (135)
T PF00899_consen 77 IPEKIDEEN-IEELLKDYDIVIDCVDSLAARLLLNEICR 114 (135)
T ss_dssp EESHCSHHH-HHHHHHTSSEEEEESSSHHHHHHHHHHHH
T ss_pred eeccccccc-ccccccCCCEEEEecCCHHHHHHHHHHHH
Confidence 33321 111 1111 278999999988766655554443
No 196
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.14 E-value=62 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=21.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaI 118 (248)
-.|.|+|-|-||.+.+.++-.. .. .++++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~---G~~~vi~~ 217 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA---GASRIIGI 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEE
Confidence 4699999999999988877543 24 45555
No 197
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=51.99 E-value=5 Score=39.90 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=22.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.+|+|.|-|.+|...+..+..+ ..+++++-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e 167 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM---GHAVTIFE 167 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEe
Confidence 5899999999998888776543 34665553
No 198
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=51.59 E-value=8.3 Score=36.52 Aligned_cols=115 Identities=15% Similarity=0.055 Sum_probs=53.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhh--hhccccCc-CcccCceEEEecCCcEEECC-eEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNAS--HLLKYDSL-LGTFKADVKIVDNETISVDG-KLI 159 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~a--yLLkYDSt-HGkf~g~V~v~e~~~L~inG-k~I 159 (248)
..+|.|-|.|.+|..++..+... .+.-+.|-|. .+...+. .|+..+-+ .|+.+.++..+ .--.+|- -.|
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~--~l~~inp~v~i 98 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA---GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKE--HLRKINSEVEI 98 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHH--HHHHHCCCcEE
Confidence 35799999999999999877542 3533444454 1222221 12222211 23322211100 0000111 122
Q ss_pred EEEecC-CCCCCCCCCCcccEEecCcccccCchhhhHHH-HcCCCEEE
Q 025797 160 KVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI-QAGAKKVI 205 (248)
Q Consensus 160 ~v~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL-~~GAKKVI 205 (248)
..+... +++++.---.+.|+||+||.-|.++..+.... +.|.+-|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 222211 22222222246899999999987765443322 23555443
No 199
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=51.50 E-value=20 Score=34.24 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+||+|.|.|.+|..+++.+.+. ..+|+.++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~---G~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL---GHEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc---CCeEEEEE
Confidence 3799999999999999887653 34666664
No 200
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=51.07 E-value=24 Score=31.93 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=23.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.||+|.|.|.+|..+++.+... ..+|+.++-
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA---GMDVWLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCeEEEEeC
Confidence 3799999999999999887653 367666643
No 201
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=51.04 E-value=54 Score=31.71 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=23.8
Q ss_pred eeEEEeCCChhhHH-HHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRl-vlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|.|.|+|.+|+. ++|.+..+ ..+ |.+.|.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~---G~~-V~~~D~ 39 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL---GYK-VSGSDL 39 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC---CCe-EEEECC
Confidence 37999999999999 79998764 345 456665
No 202
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=50.98 E-value=26 Score=29.90 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=20.2
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
||+|.|.|.+|+.++-.+... .++|+.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~ 28 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLY 28 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEE
Confidence 699999999999988776543 3555544
No 203
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=50.21 E-value=28 Score=31.23 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
+||+|.|+|.||..+++.+.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~ 25 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS 25 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC
Confidence 5899999999999999998864
No 204
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=50.03 E-value=13 Score=31.00 Aligned_cols=31 Identities=35% Similarity=0.632 Sum_probs=24.7
Q ss_pred CCcEEECCeEEEEEecCCCC---CCCCCCCcccEEe
Q 025797 149 NETISVDGKLIKVVSNRDPL---QLPWAELGIDIVI 181 (248)
Q Consensus 149 ~~~L~inGk~I~v~~~~dP~---~i~W~~~GidiVV 181 (248)
-+++.|+++...++.++||+ +|||.+ ||+|+
T Consensus 24 yGkimiGDkaFEFyn~~n~~dyIQIPW~e--I~~V~ 57 (118)
T PF06115_consen 24 YGKIMIGDKAFEFYNDRNVEDYIQIPWEE--IDYVI 57 (118)
T ss_pred cCeEEEcccceEeecCCChhhcEEeChhh--eeEEE
Confidence 46777888888999999987 699986 67554
No 205
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=50.00 E-value=23 Score=32.42 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=23.4
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
||+|.|+|.+|..+++.+... ..++.+.|-
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~---G~~V~v~d~ 32 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ---GHQLQVFDV 32 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC---CCeEEEEcC
Confidence 799999999999999988753 246665553
No 206
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=48.67 E-value=28 Score=33.01 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=28.1
Q ss_pred ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
|++||+|.| -|-.|+-++|++.+++ .++++.+-
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~ 34 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIP 34 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEe
Confidence 568999999 6999999999988774 68888774
No 207
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=48.65 E-value=28 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+||+|.|.|.+|..+++.+... ..++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~---g~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN---GHDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEE
Confidence 4899999999999999887653 24544443
No 208
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=48.45 E-value=8.4 Score=33.93 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=52.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-----CChhhhhhhccccCcCcccCceEEEecCCcEEECC-eEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLI 159 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-----~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inG-k~I 159 (248)
..||.|-|.|-+|-.++..+... .+.-+.|-|. .++..- .|+..+. -|+.+.++..+ .--.+|. -.|
T Consensus 21 ~~~VlivG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq-~l~~~~d-iG~~Ka~~~~~--~l~~~np~~~i 93 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA---GVGKLGLVDDDVVELSNLQRQ-ILHTEAD-VGQPKAEAAAE--RLRAINPDVEI 93 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEEcCcccccc-cccChhh-CCChHHHHHHH--HHHHhCCCCEE
Confidence 35899999999999999877542 3544445554 233222 1233322 36655443321 1111222 122
Q ss_pred EEEecC-CCCCCCCCCCcccEEecCcccccCchhhhH
Q 025797 160 KVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195 (248)
Q Consensus 160 ~v~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~ 195 (248)
..+..+ ++++++---.++|+||+|+.-+.++..+..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~ 130 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTDNFATRYLIND 130 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 222211 111111111358999999998876654443
No 209
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=48.06 E-value=24 Score=33.74 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.9
Q ss_pred eeeEEEeC-CChhhHHHHHHHhhC
Q 025797 86 KLKVAING-FGRIGRNFLRCWHGR 108 (248)
Q Consensus 86 ~vkV~ING-FGRIGRlvlR~~~~~ 108 (248)
..+|+|.| +|.||+.+++.+...
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~ 121 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS 121 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC
Confidence 36899998 999999999988753
No 210
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=47.38 E-value=93 Score=28.18 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
-+|.|+|-|-+|.++.+++...
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~ 183 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL 183 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877643
No 211
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=47.28 E-value=27 Score=33.07 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=24.0
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+.+|.|-|+|++|+.++|.+..+ ..++++|
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~---~~~v~vi 260 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE---GYSVKLI 260 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC---CCeEEEE
Confidence 46899999999999999987653 3566666
No 212
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=46.88 E-value=74 Score=30.24 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=23.2
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
||.|.|+|++|+.++|.+..+ ..+ |.+.|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~---G~~-V~~sD~ 30 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK---GAE-VTVTDL 30 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC---CCE-EEEEeC
Confidence 578999999999999998764 234 456664
No 213
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=46.79 E-value=91 Score=31.21 Aligned_cols=87 Identities=22% Similarity=0.213 Sum_probs=52.0
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhh-hhhccccCcCcccCceEEEecCCcEEECCeEEEEEe
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNA-SHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~-ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~ 163 (248)
..||.|.|+|+-|+.++|.+.++ ..+ |.++|. ...+.. .-.+.+ .. |.+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~---G~~-v~v~D~~~~~~~~~~~~~~~--------~~---------------i~~~~ 59 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL---GAE-VTVSDDRPAPEGLAAQPLLL--------EG---------------IEVEL 59 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC---CCe-EEEEcCCCCccchhhhhhhc--------cC---------------ceeec
Confidence 35899999999999999998864 244 446664 111100 000001 11 22222
Q ss_pred cCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCC
Q 025797 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (248)
Q Consensus 164 ~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAK 202 (248)
.+.+. .+|. ..|+||=+-|+.-+.+.+..-.+.|++
T Consensus 60 g~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 60 GSHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred Cccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 22233 4453 578899999999888877766666765
No 214
>PRK08818 prephenate dehydrogenase; Provisional
Probab=46.65 E-value=30 Score=33.54 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=23.0
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+.+|+|.|+ |.||+.++|++-++ ...+|+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEE
Confidence 468999999 99999999987643 13454443
No 215
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=46.36 E-value=1.2e+02 Score=26.82 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=51.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|.|-|-+|+.+++++... ..+++++... .+...++-++ | .+..+.. .+.. .
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~---G~~v~~~~~~--~~~~~~~~~~----g-~~~~~~~-~~~~---------~----- 218 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM---GFETVAITRS--PDKRELARKL----G-ADEVVDS-GAEL---------D----- 218 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC--HHHHHHHHHh----C-CcEEecc-CCcc---------h-----
Confidence 4688899999999988887653 3566666443 2333333222 2 1111110 0000 0
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
... . ..++|+|+||.|.-.....+..+|..+..-+.++.+
T Consensus 219 ~~~--~-~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~ 258 (330)
T cd08245 219 EQA--A-AGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLP 258 (330)
T ss_pred HHh--c-cCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCC
Confidence 000 1 136899999977544445566777766665656543
No 216
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=46.33 E-value=31 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=23.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.||+|.|.|.+|+.++..+... ..+|+.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEe
Confidence 3799999999999999887653 35666554
No 217
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=46.15 E-value=66 Score=29.15 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=51.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-+|.++++.+... .. .++++.. +.+....+-++ |. +.. +|-+...+
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~---G~~~v~~~~~--~~~~~~~~~~~----ga---~~~--------i~~~~~~~---- 229 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA---GASKIIVSEP--SEARRELAEEL----GA---TIV--------LDPTEVDV---- 229 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEECC--CHHHHHHHHHh----CC---CEE--------ECCCccCH----
Confidence 3689999999999998887653 35 5555532 22333333222 31 111 11100000
Q ss_pred CCCCC-CCC-CCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQL-PWA-ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i-~W~-~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
.+.+ .+. ..|+|+|+||+|.-...+.+..+|+.|.+=|.+..+
T Consensus 230 -~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 230 -VAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred -HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccC
Confidence 0000 111 236999999998533345556677666655555443
No 218
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=46.06 E-value=78 Score=28.82 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=23.1
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+||+|.|- |++|..++.-++.| .-++++|-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R---GHeVTAiv 31 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR---GHEVTAIV 31 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC---CCeeEEEE
Confidence 48999885 99999998888876 35666663
No 219
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=45.96 E-value=22 Score=30.82 Aligned_cols=21 Identities=29% Similarity=0.787 Sum_probs=16.7
Q ss_pred eEEEeCCChhhHHHHHHHhhC
Q 025797 88 KVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~ 108 (248)
++.|-|||.+||-++|.+...
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~ 45 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGL 45 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHT
T ss_pred EEEEeCCCcccHHHHHHHhhC
Confidence 699999999999999988664
No 220
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.92 E-value=26 Score=32.90 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhC
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~ 108 (248)
+|+||.|-|- |+||..+++.+..+
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~ 25 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKG 25 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC
Confidence 3689999999 99999999887754
No 221
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=45.88 E-value=1e+02 Score=28.08 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=22.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaI 118 (248)
-+|.|+|.|-+|..+++++... .. .++++
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~---G~~~v~~~ 208 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA---GARRVIVI 208 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEE
Confidence 4689999999999988877653 35 56655
No 222
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=45.75 E-value=55 Score=28.84 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=54.5
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|- |.+|.++++++..+ ..+++++... .+....+.++ |- + .+ ++.+..
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~~--~~~~~~~~~~----g~-~-~v---------~~~~~~------ 201 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKL---GYEVVASTGK--ADAADYLKKL----GA-K-EV---------IPREEL------ 201 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHC---CCeEEEEecC--HHHHHHHHHc----CC-C-EE---------EcchhH------
Confidence 36899998 99999998887654 3566666443 2233333222 21 1 11 111000
Q ss_pred CCCC-CCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQ-LPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~-i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
.+.. ..+...++|+|+||+|. ...+.+..++..+..-|.+..+
T Consensus 202 ~~~~~~~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 202 QEESIKPLEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred HHHHHHhhccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEeec
Confidence 0000 01123478999999997 4556667788777766676654
No 223
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=45.65 E-value=39 Score=28.23 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=24.6
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.|.||+|-|.|+.|...++++... ..+++.+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~ 51 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDE 51 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEES
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC---CCEEEeccC
Confidence 468999999999999999988764 467666644
No 224
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=45.60 E-value=31 Score=33.46 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=25.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|+|.|.|.||+.+++.+.... --+++++|-.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G--~~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKG--VGKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence 57999999999999999887531 1366666654
No 225
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=45.59 E-value=8.3 Score=33.78 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=49.4
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC--ChhhhhhhccccCcCcccCceEEEecCCcEEECC-eEEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG--GVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVV 162 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~--~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inG-k~I~v~ 162 (248)
..||+|-|.|-+|..++..+... .+.-+.+-|.. +...+...+.+.+--|+.+.+... +.--.+|. ..|..+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~--~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA---GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALK--ENISEINPYTEIEAY 95 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHH--HHHHHHCCCCEEEEe
Confidence 46899999999999988876532 35334444541 222222211122223544322211 00001222 122222
Q ss_pred ecC-CCCCCCCCCCcccEEecCcccccCchhhh
Q 025797 163 SNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (248)
Q Consensus 163 ~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~ 194 (248)
.++ ++++++=--.++|+||||+.-+..+..+-
T Consensus 96 ~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~ 128 (200)
T TIGR02354 96 DEKITEENIDKFFKDADIVCEAFDNAEAKAMLV 128 (200)
T ss_pred eeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence 221 22221100126899999988777665443
No 226
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.48 E-value=95 Score=30.39 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=23.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.||+|.|+|+-|+.++|.+..+ ..++ .+.|.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~---g~~v-~~~d~ 39 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH---LPAQ-ALTLF 39 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc---CCEE-EEEcC
Confidence 3799999999999999998764 2453 45664
No 227
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=45.46 E-value=37 Score=25.24 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
.+++|-|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999999988764
No 228
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.45 E-value=1.2e+02 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=23.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|.|.|.|++|+.++|.+..+ ..+++ +.|.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~---g~~v~-~~d~ 36 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN---GAEVA-AYDA 36 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeC
Confidence 3799999999999999988764 34544 4453
No 229
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=45.09 E-value=34 Score=31.31 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=23.7
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
.++||+|.|.|.||..+...+.. .+.++.+++-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r 36 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLR 36 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHH-CCCeEEEEEe
Confidence 34689999999999988876654 3344555544
No 230
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=45.01 E-value=34 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=23.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+||+|.|.|.+|..+++.+... ..+|..++-
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~---G~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK---GVPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC---CCeEEEEeC
Confidence 5899999999999999887653 346665654
No 231
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=44.99 E-value=1.3e+02 Score=26.92 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=51.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-.|.|+|-|-+|..+++++... ..+++.+-+. ..+...++-+| |. +..+...+.+.. .. .. .+.
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~---G~~~v~~~~~-~~~~~~~~~~~----g~-~~~i~~~~~~~~-~~-~~-~~~---- 226 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR---GVGPIVASDF-SPERRALALAM----GA-DIVVDPAADSPF-AA-WA-AEL---- 226 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECC-CHHHHHHHHHc----CC-cEEEcCCCcCHH-HH-HH-HHH----
Confidence 4789999999999888877543 3454444333 23444444333 21 111111000000 00 00 000
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
...+ ..++|+|+||.|.-.....+..+++.+..-|.+.
T Consensus 227 -~~~~--~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 227 -ARAG--GPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred -HHhC--CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEC
Confidence 0011 2368999999886333345567777766655554
No 232
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=44.53 E-value=1.2e+02 Score=26.24 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=53.0
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-.|.|.|- |-+|+.+.+.+... ..+++++-. +.+....+.++ |. . .+- ....
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~---g~~v~~~~~--~~~~~~~~~~~----g~-~-~~~-~~~~--------------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALA---GAHVVAVVG--SPARAEGLREL----GA-A-EVV-VGGS--------------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCEEEEEeC--CHHHHHHHHHc----CC-c-EEE-eccc---------------
Confidence 36888888 89999988877653 246665532 22344433332 21 1 111 0000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
++...++|+|+||+|.- ..+.+..||..+.+-|.+..+
T Consensus 187 -----~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~~ 224 (305)
T cd08270 187 -----ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVGSS 224 (305)
T ss_pred -----cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEecc
Confidence 11223799999999963 456667888877776766544
No 233
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=44.23 E-value=92 Score=27.83 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=50.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-.|.|+|.|-+|..+++++..+ .+ +++++ +. ..+....+-+| |.. .+.. ++..+. +. +.+.
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~---g~~~v~~~-~~-~~~~~~~~~~~----g~~--~~~~-~~~~~~---~~---l~~~ 230 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVL---GAARVFAV-DP-VPERLERAAAL----GAE--PINF-EDAEPV---ER---VREA 230 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCceEEEE-cC-CHHHHHHHHHh----CCe--EEec-CCcCHH---HH---HHHH
Confidence 4789999999999998887754 34 67777 33 23444444443 210 1111 000000 00 0000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEE
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVII 206 (248)
. ...|+|+++||+|.=...+.+..+++.+.+=|.+
T Consensus 231 ~------~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 231 T------EGRGADVVLEAVGGAAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred h------CCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 0 1247899999998522334555677665543334
No 234
>PRK07877 hypothetical protein; Provisional
Probab=43.89 E-value=10 Score=39.94 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=55.0
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCC-----CChhhhhhhccccCcCcccCceEEEecCCcEEECC-e
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS-----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-K 157 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~-----~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inG-k 157 (248)
...+|+|-|.| .|-.++-.+.. . .+ .-+.|-|. .+++... +. .+.-|+.+.++-. +.-..||- -
T Consensus 106 ~~~~V~IvG~G-lGs~~a~~Lar-a--GvvG~l~lvD~D~ve~sNLnRq~--~~-~~diG~~Kv~~a~--~~l~~inp~i 176 (722)
T PRK07877 106 GRLRIGVVGLS-VGHAIAHTLAA-E--GLCGELRLADFDTLELSNLNRVP--AG-VFDLGVNKAVVAA--RRIAELDPYL 176 (722)
T ss_pred hcCCEEEEEec-HHHHHHHHHHH-c--cCCCeEEEEcCCEEccccccccc--CC-hhhcccHHHHHHH--HHHHHHCCCC
Confidence 34689999999 99887765442 2 22 22223343 3555532 21 2234666554432 12222443 2
Q ss_pred EEEEEecC-CCCCCCCCCCcccEEecCcccccCchhhh
Q 025797 158 LIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (248)
Q Consensus 158 ~I~v~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~ 194 (248)
.|..+.+. ++++++=--.++|+||||+.-|.++-.+.
T Consensus 177 ~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln 214 (722)
T PRK07877 177 PVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLR 214 (722)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence 45555543 44444311237899999999997765443
No 235
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.78 E-value=33 Score=30.96 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=21.5
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
||+|.|.|.+|+.+++.+... ..+|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~---G~~V~~~ 30 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS---GFQTTLV 30 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC---CCcEEEE
Confidence 799999999999999887653 2455544
No 236
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=43.66 E-value=1e+02 Score=27.54 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=51.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-.|.|+|-|.+|..+++++..+ ..+ ++++-. +.+...++.+|.. +. . ++.+.-.+...-
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~---g~~~v~~~~~--s~~~~~~~~~~g~-----~~--~--------~~~~~~~~~~~i 226 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS---GARKVIVSDL--NEFRLEFAKKLGA-----DY--T--------IDAAEEDLVEKV 226 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECC--CHHHHHHHHHhCC-----cE--E--------ecCCccCHHHHH
Confidence 3789999999999988877643 345 554422 3344444433321 10 0 111000000000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
. ...+ ..|+|+|+||+|.-.....+..+|+.+.+-|.+..+
T Consensus 227 ~-~~~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~ 267 (343)
T cd08235 227 R-ELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFFGGL 267 (343)
T ss_pred H-HHhC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEecc
Confidence 0 0011 236899999988432334556777777665555443
No 237
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=43.55 E-value=1.1e+02 Score=25.60 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=51.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|.|.+|+.+++.+... ..+++++-.. .+...++-++ | .+..++..+.- . -..+.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~---g~~v~~~~~~--~~~~~~~~~~----g---~~~~~~~~~~~-~-~~~~~------ 195 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAA---GARVIVTDRS--DEKLELAKEL----G---ADHVIDYKEED-L-EEELR------ 195 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEcCC--HHHHHHHHHh----C---CceeccCCcCC-H-HHHHH------
Confidence 4799999999999998887653 2566655322 2333333221 1 11111000000 0 00000
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
.. ...++|+|++|+|.-...+.+..++..+.+-|.++..
T Consensus 196 --~~--~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 196 --LT--GGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred --Hh--cCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence 00 1237899999998644445556677666655555543
No 238
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=43.27 E-value=69 Score=29.50 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
-+|.|+|-|-+|.+++.++..+
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~ 206 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA 206 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 3788899999999988877654
No 239
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=43.04 E-value=99 Score=27.88 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=51.6
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|- |-+|..+++++..+ ..+++++-.. .+....+.+ .+|. +..+...++..+ .+
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~--~~~~~~~~~---~lGa-~~vi~~~~~~~~-----------~~ 212 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK---GCYVVGSAGS--DEKVDLLKN---KLGF-DDAFNYKEEPDL-----------DA 212 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCC--HHHHHHHHH---hcCC-ceeEEcCCcccH-----------HH
Confidence 36999997 99999998877653 3566554322 233333321 0121 111110000000 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
....+ ...|+|+|+|++|. ...+.+..+|+.|.+=|.+..
T Consensus 213 ~i~~~--~~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 213 ALKRY--FPNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred HHHHh--CCCCcEEEEECCCH-HHHHHHHHHhccCcEEEEecc
Confidence 00111 12489999999996 445566677777666555543
No 240
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.89 E-value=31 Score=32.90 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=22.5
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+|.|.|+|.+|+.++|.+.++. .+|++..
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G---~~V~g~D 33 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKG---VYVIGVD 33 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCC---CEEEEEe
Confidence 7999999999999999987642 3544443
No 241
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=42.68 E-value=7.7 Score=33.74 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=51.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCC-CChhhhhh--hccccCcCcccCceEEEecCCcEEECC-eEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS-GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVDG-KLIKV 161 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~-~~~e~~ay--LLkYDStHGkf~g~V~v~e~~~L~inG-k~I~v 161 (248)
.||.|-|.|-+|..+++.+... .+ ++..+.+. .....+.. |+..+. -|+.+.++..+ .--.+|- -.|..
T Consensus 22 ~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d~ve~sNL~Rq~l~~~~d-iG~~Ka~~~~~--~l~~~np~v~i~~ 95 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDDHVDLSNLQRQILFTEED-VGRPKVEVAAQ--RLRELNSDIQVTA 95 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCCEEcccchhhhhccChhh-CCChHHHHHHH--HHHHhCCCCEEEE
Confidence 5799999999999999887643 34 44444332 22222222 222222 25444332211 0001221 12322
Q ss_pred EecC-CCCCCCCCCCcccEEecCcccccCchhhhHH
Q 025797 162 VSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH 196 (248)
Q Consensus 162 ~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~H 196 (248)
.... ++++++---.+.|+||+|+.-+..+..+...
T Consensus 96 ~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~ 131 (202)
T TIGR02356 96 LKERVTAENLELLINNVDLVLDCTDNFATRYLINDA 131 (202)
T ss_pred ehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 2221 2222221113689999999988776554433
No 242
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.67 E-value=38 Score=30.12 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.8
Q ss_pred eeEEEeCCChhhHHHHHHHhh
Q 025797 87 LKVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~ 107 (248)
+||+|.|.|.+|..++..+..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~ 21 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ 21 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 379999999999988877654
No 243
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=42.66 E-value=1.5e+02 Score=26.43 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=49.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|.|-+|..+++++..+ .. .++++-.. .+....+-++ |. +..+.. ++.. +...
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~---G~~~v~~~~~s--~~~~~~~~~~----g~-~~vi~~-~~~~----------~~~~ 225 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRA---GAAEIVATDLA--DAPLAVARAM----GA-DETVNL-ARDP----------LAAY 225 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECCC--HHHHHHHHHc----CC-CEEEcC-Cchh----------hhhh
Confidence 4688899999999988877643 34 45555322 2222222222 21 111110 0000 0000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
.+ ...|+|+|+||+|.-...+.+..+|+.+.+-|.++
T Consensus 226 ----~~-~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 226 ----AA-DKGDFDVVFEASGAPAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ----hc-cCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 01 12369999999985333456677888776555554
No 244
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=41.91 E-value=68 Score=30.56 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.2
Q ss_pred eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
||+|.|- |-.|.-++|++..+ +.++++.+...
T Consensus 3 ~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~ 35 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPD 35 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCC--CCeEEEEEecc
Confidence 7888884 89999999999876 57899988543
No 245
>PRK08655 prephenate dehydrogenase; Provisional
Probab=41.91 E-value=36 Score=33.26 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=22.5
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+||+|.| +|.||+.+++.+... ..++++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~---G~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK---GFEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC---CCEEEEEE
Confidence 3799997 999999999988653 24555443
No 246
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=41.68 E-value=1.1e+02 Score=31.76 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=20.0
Q ss_pred eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
.|.|-|- |.||+.++|.++.+ ..+|+++
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~---G~~Vval 110 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKL---GFRVRAG 110 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHC---CCeEEEE
Confidence 5777775 99999999988764 2455443
No 247
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=41.45 E-value=45 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=21.9
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+||+|.| .|.+|..+++.+... + -+|+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G--~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G--NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C--CEEEEE
Confidence 4799997 999999999988754 2 354444
No 248
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=41.39 E-value=37 Score=32.84 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=24.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~ 121 (248)
.+|+|.|.|.||+++++.+... .. +++++|..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~---G~~~V~v~~r~ 215 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK---GVRKITVANRT 215 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC---CCCeEEEEeCC
Confidence 5899999999999999988754 24 56666553
No 249
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=41.20 E-value=1.1e+02 Score=26.88 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=50.6
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-.|.|+| -|-+|..+.+++... ..+++++-. +.+....+.+ .+|. +..+.. .+. .+ .+
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~---G~~vi~~~~--~~~~~~~~~~---~~g~-~~~~~~-~~~---------~~--~~ 205 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL---GARVVGIAG--SDEKCRWLVE---ELGF-DAAINY-KTP---------DL--AE 205 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc---CCEEEEEeC--CHHHHHHHHh---hcCC-ceEEec-CCh---------hH--HH
Confidence 4688999 599999988877653 346666532 2233333322 1121 111111 000 00 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
.. ..+...++|+|+||+|. .....+..+|+.+..-|.+.
T Consensus 206 ~v--~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 206 AL--KEAAPDGIDVYFDNVGG-EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred HH--HHhccCCceEEEEcchH-HHHHHHHHhcCCCceEEEEe
Confidence 00 11222479999999997 34455567777665545454
No 250
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=41.20 E-value=40 Score=26.85 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
.+|+|-|.|.+|+.+++.+...
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHC
Confidence 5799999999999999988753
No 251
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=40.97 E-value=84 Score=28.24 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=52.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|-|-+|.+++..+... .++++++-.. .+....+.++ |. +.. ++.+. +.+
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~---G~~vi~~~~~--~~~~~~~~~~----g~-~~~----------i~~~~-----~~~ 221 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL---GARVIAVDID--DDKLELAREL----GA-VAT----------VNASE-----VED 221 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCeEEEEeCC--HHHHHHHHHh----CC-CEE----------Ecccc-----chh
Confidence 3799999999999988877653 3677666333 2333333222 21 111 11100 000
Q ss_pred C----CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 167 P----LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 167 P----~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
. ..+.+ + ++|+|+||+|.=........+|+.+.+-+.+..+.
T Consensus 222 ~~~~~~~~~~-~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~ 267 (345)
T cd08260 222 VAAAVRDLTG-G-GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTL 267 (345)
T ss_pred HHHHHHHHhC-C-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcC
Confidence 0 01122 2 79999999984223345567777766655565443
No 252
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=40.86 E-value=1.1e+02 Score=28.26 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=51.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|-+|.++++++..+ ..+ ++++... .+....+-++ |. +.. ++.+.-.+. .
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~---G~~~v~~~~~~--~~k~~~~~~~----g~-~~~----------i~~~~~~~~--~ 245 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIA---GCTTIIAVDIV--DSRLELAKEL----GA-THV----------INPKEEDLV--A 245 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCC--HHHHHHHHHc----CC-cEE----------ecCCCcCHH--H
Confidence 3699999999999988877654 243 4444322 2233222222 21 100 111000000 0
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
...+.. ..|+|+|+||+|.=...+.+..+++.+.+-|.+..+
T Consensus 246 ~v~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 246 AIREIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAP 287 (365)
T ss_pred HHHHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcC
Confidence 001111 358999999998523345667788777665555443
No 253
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=40.71 E-value=30 Score=32.99 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
|||.+.|.|-|||.++=.++.+.+ .+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEE
Confidence 479999999999966544455433 5566664
No 254
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=40.69 E-value=40 Score=30.90 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=23.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
.+|+|.|.|.||..+++.+..+ ..+|++++-
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~---G~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA---GHEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC---CCeeEEEeC
Confidence 3799999999999998877653 356665543
No 255
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=40.58 E-value=1.7e+02 Score=27.71 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=24.4
Q ss_pred CcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 175 ~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
.|+|+|||++|.-.....+-.+++.+.+.|++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4799999999865555666677776666666644
No 256
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.58 E-value=1.3e+02 Score=28.70 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|.|-|.|+||+.+++.+.++ ..+|+ +.|.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~---G~~V~-~~d~ 36 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL---GAKVI-LTDE 36 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCEEE-EEeC
Confidence 4799999999999999988764 24544 4454
No 257
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=40.55 E-value=1.2e+02 Score=28.91 Aligned_cols=32 Identities=28% Similarity=0.213 Sum_probs=22.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
-+|.|.|-|.||.+++.++..+ ..++|.+-|.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~---Ga~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL---GAAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCceEEEeCC
Confidence 3688899999999988877643 3454445444
No 258
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.45 E-value=44 Score=30.34 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=22.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.||+|.|.|.+|..+++.+... ..+|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK---GLQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC---CCeEEEEE
Confidence 4799999999999999877643 35665554
No 259
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=40.20 E-value=41 Score=32.56 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=27.0
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+++||+|-|- |.+|+.++|++.+++ .++++.+-
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~ 70 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMT 70 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEE
Confidence 6679999997 999999999998874 56766653
No 260
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=39.90 E-value=30 Score=34.34 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=24.6
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
+|+|.|+|++|..++|.+... ..+|++.|-.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~---G~~V~v~drt 31 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH---GFTVSVYNRT 31 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc---CCeEEEEeCC
Confidence 489999999999999988764 3677766643
No 261
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=39.86 E-value=2.4e+02 Score=26.14 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=22.7
Q ss_pred cccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 176 GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
|+|+|+||+|. ...+.+..++..+..-|++..
T Consensus 285 g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 285 DPDIVFEHPGR-ATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred CCeEEEECCch-HhHHHHHHHhccCCEEEEEcc
Confidence 79999999996 455666677777655555543
No 262
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.40 E-value=51 Score=29.91 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=23.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
++++|-|.|.||--+.|.|-.. ..+|+..|-
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a---g~eV~igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA---GHEVIIGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC---CCeEEEecC
Confidence 5899999999999999887642 356666643
No 263
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=38.93 E-value=45 Score=27.68 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=30.9
Q ss_pred eeEEEeCCChhhHH---HHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc
Q 025797 87 LKVAINGFGRIGRN---FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD 134 (248)
Q Consensus 87 vkV~INGFGRIGRl---vlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD 134 (248)
|||.-.|.|+++|- ++-.++++...+..+++||... .+....|=++|
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~~-~~~~~~L~~qd 50 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPRS-VDAIDALNEQD 50 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHCC-CHHHHHHHCCT
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEecC-chHHHHhhcCC
Confidence 58999999999998 6655555555678999998752 22344454554
No 264
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=38.78 E-value=31 Score=32.69 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=28.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD 134 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD 134 (248)
++++..|+||.|+.+.|-+..+ .-++|+- |. +.+.+..|-.|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~---ghdvV~y-D~-n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG---GHDVVGY-DV-NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC---CCeEEEE-cC-CHHHHHHHHhcC
Confidence 4689999999999988877754 4566654 22 334444554443
No 265
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.26 E-value=1.5e+02 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=22.9
Q ss_pred CcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 175 ~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
.|+|+++||+|.=.....+..+|+.+.+-|.+..
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecc
Confidence 5799999999953334566677877665554543
No 266
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=38.11 E-value=46 Score=29.89 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=22.4
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
||+|.|.|.+|..++..+... ..+++.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~---g~~V~~~d 33 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA---GYDVVMVD 33 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC---CCceEEEe
Confidence 799999999999999887653 24655553
No 267
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=38.09 E-value=45 Score=25.43 Aligned_cols=92 Identities=26% Similarity=0.314 Sum_probs=49.3
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEe-c
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-N 164 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~-~ 164 (248)
+-+|.|.|.|+.|+.++...+.. ..++++++=|. +.+.. |+ .++| |.|+. -
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~--~g~~i~~~~dv-~~~~~----------G~-------------~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSM--RGFGIVAVFDV-DPEKI----------GK-------------EIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHH--HCECEEEEEEE-CTTTT----------TS-------------EETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHH--cCCCCEEEEEc-CCCcc----------Cc-------------EECC--EEeeccH
Confidence 35899999999999887444432 24566655443 11111 11 1233 33441 1
Q ss_pred CCC-CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 165 RDP-LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 165 ~dP-~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
++- +.+ ++|+.|=|.-.-.-.+.+..-+++|.|-++.-+|.
T Consensus 55 ~~l~~~~-----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 55 DELEEFI-----EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHHC-----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESSS
T ss_pred HHhhhhh-----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 111 111 26766656544444455566677899999887773
No 268
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=37.96 E-value=52 Score=26.58 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=29.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-CChhhhhh
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASH 129 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-~~~e~~ay 129 (248)
.+|.|.|.|-+||.+++.+....- =+|..+|-. ...+.++.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nRt~~ra~~l~~ 54 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA--KEITIVNRTPERAEALAE 54 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS--SEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC--CEEEEEECCHHHHHHHHH
Confidence 489999999999999999887521 147777765 23444443
No 269
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=37.61 E-value=39 Score=33.69 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.0
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+|+|.|+|.+|..+++.+..+ ..+|.+.|-
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~---G~~V~v~dr 32 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR---GFKISVYNR 32 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC---CCeEEEEeC
Confidence 799999999999999988764 356666553
No 270
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=37.38 E-value=55 Score=31.26 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND 120 (248)
+||+|-|-|+||..++-.++.+. ..++-++-||.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~ 35 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE 35 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence 48999999999998876666554 23677777874
No 271
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=37.37 E-value=1e+02 Score=27.78 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=52.3
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP 167 (248)
+|.|+|-|.+|..+.+++... ..+++++... .+....+-++ |- +. ++|.+. .+.
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~---G~~vi~~~~~--~~~~~~~~~~----g~-~~----------~i~~~~------~~~ 219 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM---GFRTVAISRG--SDKADLARKL----GA-HH----------YIDTSK------EDV 219 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC---CCeEEEEeCC--hHHHHHHHHc----CC-cE----------EecCCC------ccH
Confidence 689999999999998887654 3466666443 2333333333 21 11 111110 011
Q ss_pred C--CCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 168 L--QLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 168 ~--~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
. -..| -|+|+|+|++|.=...+.+..+|..+..-|.+..+
T Consensus 220 ~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 220 AEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred HHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecC
Confidence 0 0123 27899999987433445556777766665656543
No 272
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.25 E-value=37 Score=31.76 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
.||+|.|-|.||-.++-.+..+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~ 25 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK 25 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5899999999999877665543
No 273
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=36.98 E-value=1.9e+02 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.6
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
-+|.|+|- |-+|..+++++... ..+++++.+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~---g~~v~~~~~~ 180 (341)
T cd08290 148 DWVIQNGANSAVGQAVIQLAKLL---GIKTINVVRD 180 (341)
T ss_pred CEEEEccchhHHHHHHHHHHHHc---CCeEEEEEcC
Confidence 36899986 99999998887654 3677777665
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=36.56 E-value=1.7e+02 Score=28.23 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=58.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|+|.|+|=.|.+....+... ..+|++|--..+-...+- + +.++.- ||. +|
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~---ga~Via~~~~~~K~e~a~--~-------lGAd~~--------i~~--------~~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM---GAEVIAITRSEEKLELAK--K-------LGADHV--------INS--------SD 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCChHHHHHHH--H-------hCCcEE--------EEc--------CC
Confidence 5899999998888777766533 268888854433222221 1 112222 221 12
Q ss_pred CCCCC-CCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 167 PLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 167 P~~i~-W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
++.+. +.+. +|++||+.+ -.+.+.+-.-|+.|-+-|++-.|.
T Consensus 220 ~~~~~~~~~~-~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 220 SDALEAVKEI-ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred chhhHHhHhh-CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 21111 1122 899999999 878888888888888889988884
No 275
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=36.38 E-value=67 Score=28.81 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=51.4
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCe-EEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l-~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
-+|.|+|- |-+|..+++++..+ .. +++++-.. .+....+.+ .+|- +..+.. .+..+ .
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~---G~~~Vi~~~~s--~~~~~~~~~---~lGa-~~vi~~-~~~~~-----------~ 214 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL---GCSRVVGICGS--DEKCQLLKS---ELGF-DAAINY-KTDNV-----------A 214 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc---CCCEEEEEcCC--HHHHHHHHH---hcCC-cEEEEC-CCCCH-----------H
Confidence 37999998 99999988877543 34 56666332 233332222 0121 111110 00000 0
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
+...++ ...|+|+|+||+|.-. .+.+..+|..|.+-|.+.
T Consensus 215 ~~i~~~--~~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 215 ERLREL--CPEGVDVYFDNVGGEI-SDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHHHH--CCCCceEEEECCCcHH-HHHHHHHhccCCEEEEEe
Confidence 000011 1248999999999632 355667787777766654
No 276
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=36.30 E-value=1.6e+02 Score=26.33 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=51.8
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|- |-+|..+++++-.+ ..+++++-.. .+....+.++ |- +..+.. .+.. .+.+
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~s--~~~~~~~~~l----Ga-~~vi~~-~~~~---------~~~~- 198 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAGS--DEKVAYLKKL----GF-DVAFNY-KTVK---------SLEE- 198 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCC--HHHHHHHHHc----CC-CEEEec-cccc---------cHHH-
Confidence 36999995 99999988877643 3466655332 2344433222 31 111110 0000 0000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
.-..+. .-|+|+|+||+|.= ..+.+..+|+.|.+=|++..
T Consensus 199 ~~~~~~--~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 199 TLKKAS--PDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred HHHHhC--CCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEecc
Confidence 000111 23799999999852 33556677777777676654
No 277
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.09 E-value=37 Score=33.11 Aligned_cols=95 Identities=26% Similarity=0.245 Sum_probs=50.7
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC--ChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG--GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~--~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~ 162 (248)
+--||.|.|.|.||.+..+++-.... -+|| |-|.. -++... +|..++... ..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA--~~VV-i~d~~~~Rle~Ak----------~~Ga~~~~~-~~------------ 222 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA--SDVV-ITDLVANRLELAK----------KFGATVTDP-SS------------ 222 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC--CcEE-EeecCHHHHHHHH----------HhCCeEEee-cc------------
Confidence 44589999999999877776543222 2443 44442 222221 234444421 00
Q ss_pred ecCCCCC---CCCCCCc---ccEEecCcccccCchhhhHHHHcCCCEEEE
Q 025797 163 SNRDPLQ---LPWAELG---IDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (248)
Q Consensus 163 ~~~dP~~---i~W~~~G---idiVVE~TG~F~~~e~a~~HL~~GAKKVII 206 (248)
...+|++ +--+.+| .|+++||||.=.+.+.+-.-++.|-. +++
T Consensus 223 ~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vl 271 (354)
T KOG0024|consen 223 HKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGT-VVL 271 (354)
T ss_pred ccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCE-EEE
Confidence 0001111 1111233 89999999998888777666665433 444
No 278
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=36.08 E-value=1.5e+02 Score=26.40 Aligned_cols=94 Identities=17% Similarity=0.195 Sum_probs=50.0
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+| -|-+|..+++++... ..+++++.+. +....+-++ |. +..+.. .+..+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~---G~~v~~~~~~---~~~~~~~~~----g~-~~~~~~-~~~~~------------- 218 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAW---GAHVTTTCST---DAIPLVKSL----GA-DDVIDY-NNEDF------------- 218 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHC---CCeEEEEeCc---chHHHHHHh----CC-ceEEEC-CChhH-------------
Confidence 4689999 599999999887653 3566666543 122212222 21 111110 00000
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
...+ ....|+|+|+||+|.= ..+.+..++..+.+-|.+..
T Consensus 219 -~~~l-~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~ 258 (350)
T cd08248 219 -EEEL-TERGKFDVILDTVGGD-TEKWALKLLKKGGTYVTLVS 258 (350)
T ss_pred -HHHH-HhcCCCCEEEECCChH-HHHHHHHHhccCCEEEEecC
Confidence 0000 0124799999999853 44555567766666565543
No 279
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=35.83 E-value=18 Score=32.50 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=48.7
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCC-CChhhhhh--hccccCcCcccCceEEEecCCcEEECC-eEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS-GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVDG-KLIK 160 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~-~~~e~~ay--LLkYDStHGkf~g~V~v~e~~~L~inG-k~I~ 160 (248)
.-||.|-|.|-+|-.+++.+... .+ ++..|.+. .+...+.. |+..+ --|+.+.++-.. .--.+|- -.|.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~-dvG~~Ka~~a~~--~l~~lnp~v~i~ 105 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA---GVGTLTLVDFDTVSLSNLQRQVLHDDA-TIGQPKVESARA--ALARINPHIAIE 105 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCEECcchhhhhhcCChh-hCCChHHHHHHH--HHHHHCCCCEEE
Confidence 45899999999999999987642 24 33333322 22222222 22223 236554433210 0001121 1222
Q ss_pred EEecC-CCCCCC--CCCCcccEEecCcccccCch
Q 025797 161 VVSNR-DPLQLP--WAELGIDIVIEGTGVFVDGP 191 (248)
Q Consensus 161 v~~~~-dP~~i~--W~~~GidiVVE~TG~F~~~e 191 (248)
.+..+ ++.+++ |. +.|+||+|+.-+..+.
T Consensus 106 ~~~~~i~~~~~~~~~~--~~DiVi~~~D~~~~r~ 137 (245)
T PRK05690 106 TINARLDDDELAALIA--GHDLVLDCTDNVATRN 137 (245)
T ss_pred EEeccCCHHHHHHHHh--cCCEEEecCCCHHHHH
Confidence 22221 222221 33 6799999999886654
No 280
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=35.75 E-value=1.9e+02 Score=25.85 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=51.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|.+|..+++++-.+ ..+ ++++... .+....+.++ |. . .+ ++ .+
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~---G~~~v~~~~~~--~~~~~~l~~~----g~-~-~~---------~~--------~~ 212 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKIL---GAKRVIAVDID--DEKLAVAREL----GA-D-DT---------IN--------PK 212 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCC--HHHHHHHHHc----CC-C-EE---------ec--------Cc
Confidence 3799999999999988877543 344 6666433 2333333222 21 1 01 11 11
Q ss_pred CCC--CC-CC-CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 166 DPL--QL-PW-AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 166 dP~--~i-~W-~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
++. ++ +. ...++|+|+||+|.-.....+..+|+.+.+-+.+..+
T Consensus 213 ~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~ 260 (343)
T cd08236 213 EEDVEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIP 260 (343)
T ss_pred cccHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccc
Confidence 110 00 00 1236899999987533445566778776665555544
No 281
>PLN02702 L-idonate 5-dehydrogenase
Probab=35.72 E-value=1.5e+02 Score=27.17 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=22.9
Q ss_pred cccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 176 GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
++|+|+||+|.-.....+..+|+.+.+-|++.
T Consensus 254 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCVGFNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 68999999995444566678888766545454
No 282
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.55 E-value=2.3e+02 Score=24.42 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=23.6
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
-.|.|+|- |-+|..+++++... ..+++++..
T Consensus 145 ~~vli~g~~g~~g~~~~~la~~~---g~~v~~~~~ 176 (319)
T cd08267 145 QRVLINGASGGVGTFAVQIAKAL---GAHVTGVCS 176 (319)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc---CCEEEEEeC
Confidence 36899997 99999999887653 357777754
No 283
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=35.49 E-value=52 Score=31.50 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=28.2
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.++||+|-|. ++|+..++++.... ..+++|+|-|.
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~ 36 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ 36 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC
Confidence 3579999999 78999998876532 26899999997
No 284
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=34.99 E-value=60 Score=28.98 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.2
Q ss_pred eeEEEeCCChhhHHHHHHHhh
Q 025797 87 LKVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~ 107 (248)
+||+|.|.|.+|..++..+..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~ 21 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE 21 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 479999999999998887764
No 285
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=34.83 E-value=7.9 Score=37.20 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=51.7
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCC-CChhhhhh--hccccCcCcccCceEEEecCCcEEECC-eEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS-GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVDG-KLIK 160 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~-~~~e~~ay--LLkYDStHGkf~g~V~v~e~~~L~inG-k~I~ 160 (248)
..+|.|-|.|-+|-.++..+... .+ ++..|.+. .++..+.. |+..+.+ |+.+.++... .-..+|. -.|.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~---Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di-G~~Ka~~~~~--~l~~~np~v~i~ 114 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA---GVGTITLIDDDTVDVSNIHRQILFGASDV-GRPKVEVAAE--RLKEIQPDIRVN 114 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEeCCEEccccccccccCChhHC-CCHHHHHHHH--HHHHHCCCCeeE
Confidence 35899999999999999877642 34 44433332 22222222 3333332 5544333211 0001221 1222
Q ss_pred EEecC-CCCCCCCCCCcccEEecCcccccCchhhh
Q 025797 161 VVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAG 194 (248)
Q Consensus 161 v~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~ 194 (248)
.+..+ +++++..--.+.|+|||||.-|.++-.+.
T Consensus 115 ~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in 149 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSDSFATKFLVA 149 (370)
T ss_pred EeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHH
Confidence 22211 22222211246899999999998775443
No 286
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=34.70 E-value=16 Score=32.91 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=51.7
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccc-cCcCcccCceEEEecCCcEEECC-eEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKY-DSLLGTFKADVKIVDNETISVDG-KLIKV 161 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkY-DStHGkf~g~V~v~e~~~L~inG-k~I~v 161 (248)
..||.|-|.|-+|-.++..+... .+.-+.|-|. .....+..-+-| ++.-|+.+.++-.. .--.+|- -.|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~---Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~--~l~~inp~v~i~~ 98 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA---GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKD--ALTQINPHIAINP 98 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHH--HHHHHCCCcEEEE
Confidence 35899999999999999887642 3433334444 222222222222 23346554433211 0000121 12333
Q ss_pred EecC-CCCCCCCCCCcccEEecCcccccCchhhhH
Q 025797 162 VSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGK 195 (248)
Q Consensus 162 ~~~~-dP~~i~W~~~GidiVVE~TG~F~~~e~a~~ 195 (248)
+.++ ++++++=--.+.|+||+|+..+..+..+..
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~ 133 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNR 133 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHH
Confidence 3222 122121001367999999999877654443
No 287
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.01 E-value=87 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.0
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
||+|.|-|-||--++..+... +.++.++.-++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-CcEEEEEeccch
Confidence 689999999999888887654 344555555553
No 288
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.41 E-value=67 Score=29.00 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=22.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.||+|.|.|.+|..++..+... ..+|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA---GYDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC---CCeEEEEe
Confidence 4799999999999998877643 35655543
No 289
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=33.34 E-value=54 Score=31.64 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
|||+|.|.|.+|..++.++ .. ..+|+.++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~---G~~VigvD 29 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ---NHEVVALD 29 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh---CCcEEEEE
Confidence 3799999999999988554 32 36777665
No 290
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=33.34 E-value=76 Score=31.94 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=33.5
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhh
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASH 129 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ay 129 (248)
+.||+|-|. |-||.+.+.++-..+ .+++++++.-..+++.++.
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~ 100 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLAD 100 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHH
Confidence 469999999 999999999876543 4689988877666665554
No 291
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=33.28 E-value=98 Score=28.60 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=25.9
Q ss_pred ceeeEEEeCCChhhH-HHHHHHhhCCCCCeEEEEEeCCC
Q 025797 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSG 122 (248)
Q Consensus 85 ~~vkV~INGFGRIGR-lvlR~~~~~~~~~l~iVaIND~~ 122 (248)
..++|-|.|.| || .++|++.. ..++|..|.|..
T Consensus 182 k~V~V~vKGpG--gREtALRaL~~---~GLkIt~I~DvT 215 (233)
T PTZ00090 182 FAVDIKFRRIM--RVETVLQAFYA---NGLQVTQIIHEP 215 (233)
T ss_pred eEEEEEEeCCC--hHHHHHHHHHH---CCCEEEEEEECC
Confidence 35889999999 46 67788764 369999999963
No 292
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=33.28 E-value=61 Score=26.59 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.5
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~ 108 (248)
+||+|-|. |.+|..++-.+...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~ 23 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ 23 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHhC
Confidence 58999999 99999888766654
No 293
>PF03858 Crust_neuro_H: Crustacean neurohormone H; InterPro: IPR005558 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. Crustacean neurohormone H proteins are referred to as precursor-related peptides as they are typically co-transcribed and translated with the CHH neurohormone (IPR001166 from INTERPRO). However, in some species this neuropeptide is synthesized as a separate protein. Furthermore, neurohormone H can undergo proteolysis to give rise to 5 different neuropeptides [].
Probab=33.16 E-value=22 Score=24.60 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=10.5
Q ss_pred eCCChhhHHHHHH
Q 025797 92 NGFGRIGRNFLRC 104 (248)
Q Consensus 92 NGFGRIGRlvlR~ 104 (248)
-||||+.|++.-.
T Consensus 4 eG~GRMerLLaSl 16 (41)
T PF03858_consen 4 EGFGRMERLLASL 16 (41)
T ss_pred cchhhHHHHHHHH
Confidence 4999999988643
No 294
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=33.15 E-value=87 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=21.1
Q ss_pred eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+|.|-| -|.||+.+++.++++ ..+|+++
T Consensus 6 ~ilVtGatGfIG~~l~~~L~~~---g~~V~~~ 34 (322)
T PLN02662 6 VVCVTGASGYIASWLVKLLLQR---GYTVKAT 34 (322)
T ss_pred EEEEECChHHHHHHHHHHHHHC---CCEEEEE
Confidence 688888 699999999988865 2455443
No 295
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=32.87 E-value=64 Score=31.97 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.||+|.|.|.||+.++..+... .++|++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~---G~~V~v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA---GIDVAVFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEe
Confidence 4899999999999998877643 35665554
No 296
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=32.65 E-value=1.2e+02 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=26.1
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~ 122 (248)
..+.|-+.|||.--..++|++.. ..++|+-|.|..
T Consensus 62 ~~v~v~~kG~G~gr~~~ir~l~~---~glkI~~I~D~T 96 (108)
T TIGR03632 62 KTVDVYVKGPGAGRESAIRALQA---AGLEVTSIKDVT 96 (108)
T ss_pred cEEEEEEECCCCcHHHHHHHHHH---CCCEEEEEEEcC
Confidence 35889999999744467787654 368999998853
No 297
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=32.43 E-value=47 Score=33.42 Aligned_cols=133 Identities=17% Similarity=0.274 Sum_probs=65.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcc--c--CceEE-EecCCcEEECCeEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGT--F--KADVK-IVDNETISVDGKLIKV 161 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGk--f--~g~V~-v~e~~~L~inGk~I~v 161 (248)
.+||+.|+|.+|+.++|.+..+ ..++++-|-. .+...-|.+--...|. + ..++. +.+. |.--+.-|.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~---G~~V~V~NRt--~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~--l~~~dvIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK---GFPISVYNRT--TSKVDETVERAKKEGNLPLYGFKDPEDFVLS--IQKPRSVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC---CCeEEEECCC--HHHHHHHHHhhhhcCCcccccCCCHHHHHhc--CCCCCEEEEE
Confidence 4799999999999999988754 4677777653 2222222221000020 0 00000 0000 0000111222
Q ss_pred EecCCCC------CCCCCCCcccEEecCccc-ccCchhhhHHHH-cCCCEEEEcCCCCC-----CCCCeEEeecCCCCCC
Q 025797 162 VSNRDPL------QLPWAELGIDIVIEGTGV-FVDGPGAGKHIQ-AGAKKVIITAPAKG-----ADIPTYVVGVNEKDYD 228 (248)
Q Consensus 162 ~~~~dP~------~i~W~~~GidiVVE~TG~-F~~~e~a~~HL~-~GAKKVIISAPsk~-----~D~ptiV~GVN~~~y~ 228 (248)
+...++- -++.-+.| |+|||++=. +.+......-++ .|+. .|-+|..| ..-|+|+.|=+.+.|+
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~--fldapVSGG~~gA~~G~~im~GG~~~a~~ 156 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLL--YLGMGVSGGEEGARNGPSLMPGGSFEAYK 156 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCe--EEeCCCcCCHHHhcCCCeEEecCCHHHHH
Confidence 2211110 12222233 699998777 455555554444 4665 56777421 1235788888888775
Q ss_pred C
Q 025797 229 H 229 (248)
Q Consensus 229 ~ 229 (248)
.
T Consensus 157 ~ 157 (493)
T PLN02350 157 N 157 (493)
T ss_pred H
Confidence 4
No 298
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=32.32 E-value=61 Score=33.27 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=23.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
.||+|.|+|.||+.+++.+... +...+|++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-G~~~~V~~~d 35 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-GLAREVVAVD 35 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCCEEEEEE
Confidence 4799999999999999988753 2123555554
No 299
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=32.23 E-value=64 Score=31.25 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+||+|.|.|.+|..+++++..+ ..++++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D 33 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR---QKQVIGVD 33 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC---CCEEEEEe
Confidence 5899999999999999887653 35676665
No 300
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=32.13 E-value=60 Score=31.72 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=23.6
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
++||+|.|.|.+|..++..+.. ..++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~----~~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK----SRQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc----CCEEEEEeC
Confidence 4689999999999988887432 267777653
No 301
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=32.02 E-value=80 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=22.9
Q ss_pred EEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 89 V~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
|.|-| -|.+|+.+++.++.+. .+|+++.-.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecC
Confidence 56777 5999999999999763 677766543
No 302
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=31.42 E-value=98 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=22.7
Q ss_pred eeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 86 ~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+.+|.|-| -|.||+.+++.+..+ ..+|+++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~---g~~V~~~ 47 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK---GFAVKAG 47 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC---CCEEEEE
Confidence 45899999 599999999988764 2455544
No 303
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.17 E-value=78 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.8
Q ss_pred EEEeCCChhhHHHHHHHhh
Q 025797 89 VAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 89 V~INGFGRIGRlvlR~~~~ 107 (248)
|.|.|.|-||.+++-.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~ 19 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ 19 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH
T ss_pred CEEECcCHHHHHHHHHHHH
Confidence 6899999999988866554
No 304
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.53 E-value=69 Score=31.53 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=23.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|.|.|+|++|+..+|.+..+ ..+++ +.|.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~---G~~v~-~~D~ 43 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF---GARPT-VCDD 43 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEE-EEcC
Confidence 3799999999999999987654 24544 4664
No 305
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=30.16 E-value=47 Score=33.02 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.5
Q ss_pred ceeeEEEeCCChhhHHHHHHHhh
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~ 107 (248)
.+.+|||.|||-.|++++.-+..
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~ 73 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLID 73 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHh
Confidence 46899999999999998876653
No 306
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=30.00 E-value=1.7e+02 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|.|-|-|.+||.+++.+... ..++..+|-.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~---g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA---DCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 4799999999999999987754 2466666643
No 307
>PRK05309 30S ribosomal protein S11; Validated
Probab=29.96 E-value=1.4e+02 Score=24.88 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.2
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~ 122 (248)
..+.|-|.|||+--..++|++.. ..++|+-|-|..
T Consensus 79 ~~v~v~ikG~G~Gr~~air~L~~---~glkI~~I~D~T 113 (128)
T PRK05309 79 KTVEVFVKGPGSGRESAIRALQA---AGLEVTSIKDVT 113 (128)
T ss_pred cEEEEEEECCCCcHHHHHHHHHH---CCCEEEEEEEcC
Confidence 35889999999744477787753 368999998853
No 308
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=29.81 E-value=2.6e+02 Score=26.01 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=23.8
Q ss_pred CcccEEecCccccc-CchhhhHHHHcCCCEEEEcCC
Q 025797 175 LGIDIVIEGTGVFV-DGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 175 ~GidiVVE~TG~F~-~~e~a~~HL~~GAKKVIISAP 209 (248)
.|+|+|+||+|.-. ..+.+..+|..+.+-|.++.+
T Consensus 274 ~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~ 309 (384)
T cd08265 274 WGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRA 309 (384)
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCC
Confidence 47999999999421 234556788777776666544
No 309
>PF07482 DUF1522: Domain of Unknown Function (DUF1522); InterPro: IPR011087 The function of these proteins is unknown. All are from Bradyrhizobium japonicum.
Probab=29.79 E-value=90 Score=25.72 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=37.1
Q ss_pred cEEECCeEEEEEecCCCC--CCCCCCCccc--EEecCcc---cccCchh---hh--HHHHcCCCEEEEcC
Q 025797 151 TISVDGKLIKVVSNRDPL--QLPWAELGID--IVIEGTG---VFVDGPG---AG--KHIQAGAKKVIITA 208 (248)
Q Consensus 151 ~L~inGk~I~v~~~~dP~--~i~W~~~Gid--iVVE~TG---~F~~~e~---a~--~HL~~GAKKVIISA 208 (248)
.|.||||.|++-...-|. .++|+ .|+. +|-|.-| +|..... +- --|..|+|..-|+.
T Consensus 2 TL~VNGkTITFk~a~~P~~~~~~~g-sgv~gni~TDG~GNSTVYL~~aTv~DvL~AIDLAsGVktati~~ 70 (109)
T PF07482_consen 2 TLTVNGKTITFKNADAPAAANVPSG-SGVSGNIVTDGNGNSTVYLQTATVGDVLTAIDLASGVKTATISN 70 (109)
T ss_pred eEEECCeEEEEcCCCCCCccccccc-ccccccEEecCCCceEEEEcCccHHHHHHHHhhhcCceEEEeec
Confidence 588999999999887664 67886 4665 6666554 3333222 22 23346999988864
No 310
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.68 E-value=73 Score=31.02 Aligned_cols=30 Identities=20% Similarity=0.116 Sum_probs=23.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
-.|.|-|+|++|+.+++.+.++ +.++++|-
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~---g~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR---GQAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC---CCCEEEEE
Confidence 4699999999999999987653 34665553
No 311
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=29.66 E-value=2.5e+02 Score=25.67 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=50.2
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
+|.|+|-|.+|.++++++..+ ..+ ++++... .+....+.++ |. +. +++ .++
T Consensus 190 ~VlI~g~g~vG~~~~~lak~~---G~~~vi~~~~s--~~~~~~~~~~----g~-~~----------v~~--------~~~ 241 (367)
T cd08263 190 TVAVIGVGGVGSSAIQLAKAF---GASPIIAVDVR--DEKLAKAKEL----GA-TH----------TVN--------AAK 241 (367)
T ss_pred EEEEECCcHHHHHHHHHHHHc---CCCeEEEEeCC--HHHHHHHHHh----CC-ce----------Eec--------CCc
Confidence 688899999999999887653 244 5555322 2223333222 21 00 111 111
Q ss_pred CC---CC-CC-CCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 167 PL---QL-PW-AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 167 P~---~i-~W-~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
+. ++ .+ ...++|+|+||+|.-...+.+..+|+.+.+-|.+..
T Consensus 242 ~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 242 EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEcc
Confidence 10 00 01 124789999998863133456678887776555543
No 312
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.25 E-value=65 Score=31.10 Aligned_cols=20 Identities=15% Similarity=0.571 Sum_probs=18.3
Q ss_pred eeEEEeCCChhhHHHHHHHh
Q 025797 87 LKVAINGFGRIGRNFLRCWH 106 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~ 106 (248)
+||.|.|+|+.|+.++|.+.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~ 20 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK 20 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh
Confidence 47999999999999999987
No 313
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=28.97 E-value=68 Score=31.54 Aligned_cols=96 Identities=23% Similarity=0.251 Sum_probs=50.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEec
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~ 164 (248)
+||.|-|.|+||+-+++-+..+.+ .+|. |-|. ...+.+. +++.++ ++ .+.+| .
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~-iAdRs~~~~~~i~-----~~~~~~----v~-----~~~vD--------~ 56 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVT-IADRSKEKCARIA-----ELIGGK----VE-----ALQVD--------A 56 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEE-EEeCCHHHHHHHH-----hhcccc----ce-----eEEec--------c
Confidence 589999999999999997665432 4543 3332 2222222 222221 11 11111 1
Q ss_pred CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 165 ~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
.|+..+.=--.+-|+||.|-.-|.+..-++.-++.|+.=|=+|
T Consensus 57 ~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 57 ADVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTS 99 (389)
T ss_pred cChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcc
Confidence 1111110000122778888888877776666677777655444
No 314
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.88 E-value=87 Score=28.68 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=22.0
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
||+|.|.|.+|+.++..+... ..+++..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d 35 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA---GVDVLVFE 35 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEEEEE
Confidence 899999999999998766532 35655554
No 315
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=28.79 E-value=15 Score=34.95 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=23.1
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
||.|.|.|-+|-.++|.+... .+.-+.|-|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~a---GVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW---GVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCCeEEEECC
Confidence 689999999999999987653 3544445554
No 316
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.77 E-value=56 Score=32.63 Aligned_cols=50 Identities=40% Similarity=0.525 Sum_probs=37.6
Q ss_pred CcccEEecCccc--ccCchhhhHHHHcC-CCEEEEcCCCCCCCCCeEEeecCCCCCC
Q 025797 175 LGIDIVIEGTGV--FVDGPGAGKHIQAG-AKKVIITAPAKGADIPTYVVGVNEKDYD 228 (248)
Q Consensus 175 ~GidiVVE~TG~--F~~~e~a~~HL~~G-AKKVIISAPsk~~D~ptiV~GVN~~~y~ 228 (248)
--||+|+|+.|. |.|.=-+.=-|+.| |.||++ .| | ++|=||=-|-+.+++
T Consensus 239 ~rVDfVlDNaGfEL~~DLilAeyli~~glA~kV~f-H~-K--aiPWFVSDvt~~Df~ 291 (434)
T KOG3870|consen 239 GRVDFVLDNAGFELFTDLILAEYLISSGLATKVRF-HV-K--AIPWFVSDVTEKDFD 291 (434)
T ss_pred ceEEEEEeCCccchhHHHHHHHHHHhccccceEEE-cc-c--CCceeeecccccchH
Confidence 358999999996 55555555566777 889988 44 5 699999999887763
No 317
>PRK14851 hypothetical protein; Provisional
Probab=28.73 E-value=21 Score=37.36 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=52.5
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhh-hccccCcCcccCceEEEecCCcEEECC-eEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH-LLKYDSLLGTFKADVKIVDNETISVDG-KLIKV 161 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ay-LLkYDStHGkf~g~V~v~e~~~L~inG-k~I~v 161 (248)
..||+|-|.|=+|-.++-.+... .+.-+.|-|. .++..+-. ++-..+.-|+.+.++.. +.-..+|- -.|.+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~---GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~--~~l~~inP~~~I~~ 117 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRT---GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMK--EQALSINPFLEITP 117 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHh---CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHH--HHHHHhCCCCeEEE
Confidence 46899999999999887665432 2433334443 22222222 11123334776655542 12222443 35666
Q ss_pred EecC-CCCCCCCCCCcccEEecCccccc
Q 025797 162 VSNR-DPLQLPWAELGIDIVIEGTGVFV 188 (248)
Q Consensus 162 ~~~~-dP~~i~W~~~GidiVVE~TG~F~ 188 (248)
+.+. ++++++---.|+|+||||+-.|.
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECCCCCc
Confidence 5544 44444321237999999998653
No 318
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=28.31 E-value=54 Score=33.31 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=18.1
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVV 116 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iV 116 (248)
.+|+|.|+|+||+.- +++..+..++++
T Consensus 37 KtIaIIGyGSqG~Aq---AlNLrdSGvnVv 63 (487)
T PRK05225 37 KKIVIVGCGAQGLNQ---GLNMRDSGLDIS 63 (487)
T ss_pred CEEEEEccCHHHHHH---hCCCccccceeE
Confidence 589999999999932 233333456555
No 319
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=28.19 E-value=24 Score=36.98 Aligned_cols=119 Identities=23% Similarity=0.237 Sum_probs=61.8
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC-----CChhhhhhhccccCc-C-cccCceEEEe----cCCcEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-----GGVKNASHLLKYDSL-L-GTFKADVKIV----DNETIS 153 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~-----~~~e~~ayLLkYDSt-H-Gkf~g~V~v~----e~~~L~ 153 (248)
...||.|-|.|=+|-.++|.+... .+.=+.|-|. .++..- .|+.++-+ + |+.+.++-.+ =+-.+.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~---GVg~ItlVD~D~Ve~SNL~RQ-~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~ 412 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGW---GVRHITFVDNGKVSYSNPVRQ-SLSNFEDCLLGGRGKAETAQKALKRIFPSIQ 412 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHc---CCCeEEEEcCCEECCCccccc-cccchhhhhhcCCcHHHHHHHHHHHHCCCcE
Confidence 347899999999999999988754 3433344443 233322 35555544 2 5665433211 011222
Q ss_pred ECCeEEEE------Eec-------CCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcC
Q 025797 154 VDGKLIKV------VSN-------RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (248)
Q Consensus 154 inGk~I~v------~~~-------~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISA 208 (248)
+.+...+| +.+ +|.+++.=--.+.|+|++||--|.++--.. -+-.-.+|.+|+|
T Consensus 413 i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n-~~c~~~~kplI~a 479 (664)
T TIGR01381 413 ATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPT-VLCSRHKKIAISA 479 (664)
T ss_pred EEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHH-HHHHHhCCCEEEE
Confidence 33322222 111 111222111236799999999887763221 1112346777776
No 320
>PRK10083 putative oxidoreductase; Provisional
Probab=28.14 E-value=1.8e+02 Score=25.95 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=51.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
-+|.|+|-|-+|..+++.+.... ..+++.+-+. +.+....+.++ |. +..+.. .+..+
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~--G~~~v~~~~~-~~~~~~~~~~~----Ga-~~~i~~-~~~~~-------------- 218 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVY--NVKAVIVADR-IDERLALAKES----GA-DWVINN-AQEPL-------------- 218 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC--CCCEEEEEcC-CHHHHHHHHHh----CC-cEEecC-ccccH--------------
Confidence 37999999999998887764311 2443433333 23444433333 22 111111 00000
Q ss_pred CCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
++.++=...++|+|+||+|.=.....+..+|+.|.+-|.+..+
T Consensus 219 ~~~~~~~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 219 GEALEEKGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred HHHHhcCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence 0001001134679999999422334556677777777776554
No 321
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=28.13 E-value=26 Score=29.85 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.1
Q ss_pred eEEEeCCChhhHHHHHHHhh
Q 025797 88 KVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~ 107 (248)
||.|-|.|-+|-.++..+..
T Consensus 1 ~VlViG~GglGs~ia~~La~ 20 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR 20 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 58999999999999887654
No 322
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.02 E-value=2.4e+02 Score=25.23 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=23.7
Q ss_pred CcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 175 ~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
.|+|+++||+|.=.....+..++..+..-|++..|.
T Consensus 236 ~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~ 271 (345)
T cd08287 236 VGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPH 271 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccC
Confidence 378999999985334455667777665555555443
No 323
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.88 E-value=85 Score=30.74 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=23.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.||.|.|+|.+|+.++|.+..+ ..++. +.|.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~---G~~V~-~~D~ 46 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL---GCDVV-VADD 46 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC---CCEEE-EECC
Confidence 4799999999999999998764 24444 4453
No 324
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.59 E-value=82 Score=30.54 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.0
Q ss_pred eEEEeCCChhhHHHHHHHhhC
Q 025797 88 KVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~ 108 (248)
||+|.|+|+.|+.++|.+..+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC
Confidence 799999999999999988764
No 325
>CHL00194 ycf39 Ycf39; Provisional
Probab=27.38 E-value=93 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=22.4
Q ss_pred eEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
||.|-| -|.||+.++|.++++ ..+|+++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~---g~~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE---GYQVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC---CCeEEEEE
Confidence 788888 599999999998865 24665553
No 326
>PLN02427 UDP-apiose/xylose synthase
Probab=27.36 E-value=1.2e+02 Score=28.27 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=25.7
Q ss_pred ceeeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeC
Q 025797 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (248)
Q Consensus 85 ~~vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND 120 (248)
+++||.|-| -|.||+.++|.++++. ..+|+++..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 456899998 5999999999988652 257777753
No 327
>PRK08223 hypothetical protein; Validated
Probab=27.33 E-value=31 Score=32.43 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=50.5
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccc-cCcCcccCceEEEecCCcEEECC-eEEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKY-DSLLGTFKADVKIVDNETISVDG-KLIKV 161 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkY-DStHGkf~g~V~v~e~~~L~inG-k~I~v 161 (248)
.-+|.|-|.|=+|-.++-.+.. . .+.-+.|-|. .++..+-.-+-| .+.-|+.+.++.. +.-..+|- -.|..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~-a--GVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~--~~l~~iNP~v~V~~ 101 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLAR-L--GIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLA--EMVRDINPELEIRA 101 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-h--CCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHH--HHHHHHCCCCEEEE
Confidence 4589999999999987765543 2 3433444454 233333222222 2234766544432 11112332 13444
Q ss_pred EecC-CCCCCCCCCCcccEEecCcccc
Q 025797 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (248)
Q Consensus 162 ~~~~-dP~~i~W~~~GidiVVE~TG~F 187 (248)
+.++ ++++++.--.+.|+||||+.-|
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCC
Confidence 4432 3444332224789999999876
No 328
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=27.17 E-value=72 Score=29.65 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.1
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~ 108 (248)
+||+|.|- |.+|..++..+...
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~ 23 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE 23 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC
Confidence 48999998 99999999887764
No 329
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=26.89 E-value=34 Score=24.06 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.3
Q ss_pred ccccccCcccccccccccc
Q 025797 36 DVAEFAGLRANAGATYATG 54 (248)
Q Consensus 36 ~~~~~~g~~~~~~~~~~~~ 54 (248)
-++-|.|||+..+++..++
T Consensus 23 mVAPFtGLKS~a~fPvtrK 41 (45)
T PF12338_consen 23 MVAPFTGLKSTAAFPVTRK 41 (45)
T ss_pred eeeccccccccccCccccc
Confidence 6789999999998877433
No 330
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=26.79 E-value=97 Score=30.85 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=27.9
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
..+|+|-|||-.|+.+++.+++. .-++|++-|.
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~---GAkvva~sds 239 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHEL---GAKVVAVSDS 239 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 36899999999999999998764 3588888885
No 331
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=26.36 E-value=74 Score=31.16 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=57.3
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhcccc-----CcCcccCceEEEecCCcEEECCeEE
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYD-----SLLGTFKADVKIVDNETISVDGKLI 159 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYD-----StHGkf~g~V~v~e~~~L~inGk~I 159 (248)
.+-||+|.|-|-+|-.-+|.+... +.++.|..+|.. -+.++-++|.++ |+-..+...++ .--|+|+. |
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~-rl~~ldd~f~~rv~~~~st~~~iee~v~---~aDlvIga--V 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNID-RLRQLDDLFGGRVHTLYSTPSNIEEAVK---KADLVIGA--V 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHH-HHhhhhHhhCceeEEEEcCHHHHHHHhh---hccEEEEE--E
Confidence 456899999999999999999875 456888888754 344444455444 22222222222 12244432 2
Q ss_pred EEEecCCC--------CCCCCCCCcccEEecCcccccC
Q 025797 160 KVVSNRDP--------LQLPWAELGIDIVIEGTGVFVD 189 (248)
Q Consensus 160 ~v~~~~dP--------~~i~W~~~GidiVVE~TG~F~~ 189 (248)
-|--++.| ..++-+..=+|+.||--|.|.+
T Consensus 240 LIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et 277 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFET 277 (371)
T ss_pred EecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceec
Confidence 22233333 2344444557888888887755
No 332
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=26.28 E-value=3.8e+02 Score=25.01 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=21.0
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
-.|.|+|- |-+|..++.++... ..+++++
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~---G~~vi~~ 220 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAG---GGNPVAV 220 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc---CCeEEEE
Confidence 37899997 99999888776543 3455554
No 333
>PRK06988 putative formyltransferase; Provisional
Probab=26.23 E-value=87 Score=29.28 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.5
Q ss_pred eeeEEEeCCChhhHHHHHHHhhC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
++||++.|.+.+|...|+.++..
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~ 24 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR 24 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC
Confidence 47999999999999999998864
No 334
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.06 E-value=3.6e+02 Score=25.89 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=23.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.||.|.|+|++|+..+|.+.... ...+| .+.|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v-~~~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTV-KVIDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeE-EEEeC
Confidence 37999999999999999887542 12444 45664
No 335
>PLN02602 lactate dehydrogenase
Probab=25.81 E-value=95 Score=29.77 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=23.3
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND 120 (248)
.||+|.|-|.||-.++-.+..+. ...+-++-||.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 59999999999998876655432 12345555554
No 336
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=25.61 E-value=98 Score=28.46 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.7
Q ss_pred eEEEeCCChhhHHHHHHHhhC
Q 025797 88 KVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~ 108 (248)
||+|.|.|.+|+.++..+..+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~ 22 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ 22 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999887754
No 337
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=25.42 E-value=2.2e+02 Score=29.91 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=23.2
Q ss_pred eEEEeCCChhhHHH-HHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlv-lR~~~~~~~~~l~iVaIND~ 121 (248)
+|.|.|+|.+|+.. +|.+..+ ..+ |.+.|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~---G~~-V~~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR---GYS-VSGSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC---CCe-EEEECC
Confidence 59999999999987 8988764 345 446665
No 338
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=25.38 E-value=2.2e+02 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=21.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaI 118 (248)
-.|.|+|.|-+|.++++++... .. .++++
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~---G~~~v~~~ 194 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAA---GASLVIAS 194 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEE
Confidence 3688899999999988887643 34 56666
No 339
>PRK07411 hypothetical protein; Validated
Probab=25.09 E-value=18 Score=34.92 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhh--hccccCcCcccCceEEEecCCcEEECC-eEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVDG-KLIK 160 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ay--LLkYDStHGkf~g~V~v~e~~~L~inG-k~I~ 160 (248)
..||.|.|.|=+|-.++..+... .+.-+.|-|. .+...+-. |+..+.+ |+.+.++... .--.+|- -.|.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~---Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv-G~~Ka~~a~~--~l~~~np~v~v~ 111 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA---GIGRIGIVDFDVVDSSNLQRQVIHGTSWV-GKPKIESAKN--RILEINPYCQVD 111 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCEecccccCcCcccChHHC-CCcHHHHHHH--HHHHHCCCCeEE
Confidence 45899999999999888876532 3544445554 22222221 3333433 5544333221 0011222 1233
Q ss_pred EEecC-CCCCCC-CCCCcccEEecCcccccCchhh
Q 025797 161 VVSNR-DPLQLP-WAELGIDIVIEGTGVFVDGPGA 193 (248)
Q Consensus 161 v~~~~-dP~~i~-W~~~GidiVVE~TG~F~~~e~a 193 (248)
.+..+ ++++.. + -.+.|+|||||.-|.++-.+
T Consensus 112 ~~~~~~~~~~~~~~-~~~~D~Vvd~~d~~~~r~~l 145 (390)
T PRK07411 112 LYETRLSSENALDI-LAPYDVVVDGTDNFPTRYLV 145 (390)
T ss_pred EEecccCHHhHHHH-HhCCCEEEECCCCHHHHHHH
Confidence 33321 222211 1 13579999999998766444
No 340
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=24.96 E-value=31 Score=32.84 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=49.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhh--hccccCcCcccCceEEEecCCcEEECC-eEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVDG-KLIK 160 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ay--LLkYDStHGkf~g~V~v~e~~~L~inG-k~I~ 160 (248)
..+|.|-|.|-+|-.++..+... .+.-+.|-|. .++..+.. |+..+ .-|+.+.++... .--.+|- -.|.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~---Gvg~i~lvD~D~ve~sNL~Rq~l~~~~-diG~~Ka~~a~~--~l~~~np~v~v~ 101 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA---GVGHITIIDDDTVDLSNLHRQVIHSTA-GVGQPKAESARE--AMLALNPDVKVT 101 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCCeEEEEeCCEEcccccccCcccChh-HCCChHHHHHHH--HHHHHCCCcEEE
Confidence 46899999999999999877542 3433333343 12222221 22222 235443332211 0001221 1223
Q ss_pred EEecC-CCCCC-CCCCCcccEEecCcccccCchhh
Q 025797 161 VVSNR-DPLQL-PWAELGIDIVIEGTGVFVDGPGA 193 (248)
Q Consensus 161 v~~~~-dP~~i-~W~~~GidiVVE~TG~F~~~e~a 193 (248)
.+.++ ++++. +. -.+.|+|||||.-|.++..+
T Consensus 102 ~~~~~i~~~~~~~~-~~~~DvVvd~~d~~~~r~~~ 135 (355)
T PRK05597 102 VSVRRLTWSNALDE-LRDADVILDGSDNFDTRHLA 135 (355)
T ss_pred EEEeecCHHHHHHH-HhCCCEEEECCCCHHHHHHH
Confidence 22221 22111 11 13789999999998776544
No 341
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.90 E-value=78 Score=30.34 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=27.0
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCC------CCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~------~~~l~iVaIND~ 121 (248)
.++.|+|.|.|-+||.++.-..... .-.+++|+|.|.
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 3578999999999998886544321 123689999875
No 342
>PTZ00357 methyltransferase; Provisional
Probab=24.74 E-value=3e+02 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=25.1
Q ss_pred ceeeEEEeCCChhhHHHHHHHh--hCCCCCeEEEEEeCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVVNDS 121 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~--~~~~~~l~iVaIND~ 121 (248)
..+.|.|-|-|| |-||-|++- ...+.+++|.||=..
T Consensus 700 ~~vVImVVGAGR-GPLVdraLrAak~~gvkVrIyAVEKN 737 (1072)
T PTZ00357 700 RTLHLVLLGCGR-GPLIDECLHAVSALGVRLRIFAIEKN 737 (1072)
T ss_pred ceEEEEEEcCCc-cHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 457899999999 767766532 223457899999553
No 343
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.70 E-value=93 Score=28.10 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=18.0
Q ss_pred eeEEEeCCChhhHHHHHHHhh
Q 025797 87 LKVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~ 107 (248)
.||+|.|.|.+|+.++..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~ 24 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF 24 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh
Confidence 379999999999999887654
No 344
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=24.69 E-value=2.7e+02 Score=24.76 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=21.2
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaI 118 (248)
-+|.|.|.|-+|..+++++..+ .. .++++
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~---g~~~v~~~ 198 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLL---GAARIIAV 198 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCCEEEEE
Confidence 3688899999999988877643 23 55666
No 345
>CHL00041 rps11 ribosomal protein S11
Probab=24.67 E-value=1.9e+02 Score=23.49 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.5
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG 122 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~ 122 (248)
..+.|-|.|+|.--..++|.+.. ..++|+-|-|..
T Consensus 75 ~~v~I~ikG~G~Gr~~~ir~l~~---~glkI~~I~D~T 109 (116)
T CHL00041 75 KRAEVMIKGPGLGRDTALRAIRR---SGLKLSSIRDVT 109 (116)
T ss_pred cEEEEEEECCCCcHHHHHHHHHH---CCCEEEEEEEcC
Confidence 34889999999743466677643 468999998853
No 346
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=24.64 E-value=97 Score=25.12 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=24.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCC-CCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~-~~l~iVaIND~ 121 (248)
+.=.++|||.+++.++.-.+++.. ..++ +.|||-
T Consensus 44 I~Tsv~Gf~~~Wqavl~rf~~~~~~~~~~-i~InD~ 78 (99)
T PRK01220 44 VVTSVNGSAARWKALFERFFTAQTPPAAN-IDIHDF 78 (99)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCccE-EEEeCC
Confidence 455689999999988866666542 2455 469995
No 347
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=24.36 E-value=3.3e+02 Score=24.30 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=52.6
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~dP 167 (248)
.|.|+|.|-+|..+++++... ..+++++....+.+....+-+| |- + .+...+.+ + .+..
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~---G~~v~~~~~~~~~~~~~~~~~~----g~-~-~~~~~~~~-~-----------~~~l 225 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQ---GATVVVVGTEKDEVRLDVAKEL----GA-D-AVNGGEED-L-----------AELV 225 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHh----CC-c-ccCCCcCC-H-----------HHHH
Confidence 578899999999998887654 3566666322233444333333 21 0 01000000 0 0000
Q ss_pred CCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCC
Q 025797 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (248)
Q Consensus 168 ~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPs 210 (248)
..+ ....++|+|+||.|.=........+|+.+.+-|.++.+.
T Consensus 226 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 226 NEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC
Confidence 000 122478999999873223345567787766666666544
No 348
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.74 E-value=99 Score=28.93 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.6
Q ss_pred eEEEeCCChhhHHHHHHHhhC
Q 025797 88 KVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~ 108 (248)
||+|.|-|.||-.++-.+..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~ 21 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc
Confidence 799999999999987766544
No 349
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=23.69 E-value=2.3e+02 Score=25.67 Aligned_cols=56 Identities=29% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCeEEEEEecCCCC-CCCCCCCccc-EEecCcccccCchhh--hHHH----------HcCCCEEEEcCCC
Q 025797 155 DGKLIKVVSNRDPL-QLPWAELGID-IVIEGTGVFVDGPGA--GKHI----------QAGAKKVIITAPA 210 (248)
Q Consensus 155 nGk~I~v~~~~dP~-~i~W~~~Gid-iVVE~TG~F~~~e~a--~~HL----------~~GAKKVIISAPs 210 (248)
.|+.|-++..-.|. ++-.-..|+| ++.|||-.-...+.+ ..|+ ++|+|++++|.-+
T Consensus 201 ~g~~i~y~gDt~~~~~~~~~~~~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s 270 (303)
T TIGR02649 201 PGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVS 270 (303)
T ss_pred CCcEEEEecCCCChHHHHHHhcCCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEec
Confidence 45555554433342 2112245899 677999321111111 2343 2589999999754
No 350
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.66 E-value=1.1e+02 Score=29.34 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=22.8
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
||.|.|+|+.|+..+|.+..+ ..++ .+.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~---G~~V-~~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ---GWEV-VVSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC---CCEE-EEECC
Confidence 699999999999999988764 2443 45553
No 351
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=23.64 E-value=1e+02 Score=25.19 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=24.6
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~ 121 (248)
+.=.++|||.|++.++.-.+++. -..++ +.|||-
T Consensus 48 I~Tsv~Gf~~~WqaVl~~f~~r~~~~~~~-i~InD~ 82 (105)
T PRK02103 48 IRTAAVGFGAVWQAVVADFVERRSPGGLR-ISINDG 82 (105)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCccE-EEEeCC
Confidence 45568999999998886666664 23456 469996
No 352
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=23.57 E-value=1.1e+02 Score=24.80 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=24.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCC-CCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~-~~~l~iVaIND~ 121 (248)
+.=.++|||.|++.++.-.+++. -..++ +.|||-
T Consensus 46 I~Tsv~Gf~~~Wqavl~rf~~~~~~~~~~-i~InD~ 80 (98)
T TIGR03130 46 ITTSVDGFGAVWQAVIERFFARYPLAGLQ-IEINDF 80 (98)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCccE-EEEecC
Confidence 45568999999998886666653 23355 569996
No 353
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=23.53 E-value=1.3e+02 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=20.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVV 116 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iV 116 (248)
.+||+|.|.|-||-.+.=.+. +.+.++.++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv 31 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLA-RAGLPVRLI 31 (305)
T ss_pred CceEEEECCCHHHHHHHHHHH-hCCCCeEEE
Confidence 368999999999987664433 333444444
No 354
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=23.43 E-value=1e+02 Score=28.77 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=18.6
Q ss_pred eeeEEEeCCChhhHHHHHHHhhC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
+.||+|-|-|.||..++-.+..+
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~ 28 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ 28 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc
Confidence 35999999999999887765543
No 355
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=22.76 E-value=57 Score=28.92 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=25.9
Q ss_pred CCCCCcccEEecCcccccCchhhhHHHHc-CCCEEEEcCCCC
Q 025797 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAK 211 (248)
Q Consensus 171 ~W~~~GidiVVE~TG~F~~~e~a~~HL~~-GAKKVIISAPsk 211 (248)
.|-+.|++.||=+|-.|.+.+-+..-++. |..++++|-..+
T Consensus 90 ~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~ 131 (229)
T PF00977_consen 90 RLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDAR 131 (229)
T ss_dssp HHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEee
Confidence 35566777777777777777665554443 666777765543
No 356
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.66 E-value=1.3e+02 Score=25.53 Aligned_cols=94 Identities=24% Similarity=0.284 Sum_probs=48.9
Q ss_pred EEEeC-CChhhHHHHHHHhhCCCCCeEEEE-EeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecCC
Q 025797 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVV-VNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (248)
Q Consensus 89 V~ING-FGRIGRlvlR~~~~~~~~~l~iVa-IND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~d 166 (248)
|.|.| .|.+|+.+++.++.. ..+|.+ ++++ + +..+.-|+.- | .++. .. .-.|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~-~-~~~~~~l~~~---g---~~vv-~~--------------d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDP-S-SDRAQQLQAL---G---AEVV-EA--------------DYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSS-H-HHHHHHHHHT---T---TEEE-ES---------------TT-
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEecc-c-hhhhhhhhcc---c---ceEe-ec--------------ccCC
Confidence 45666 599999999999873 355555 4444 1 1122222221 1 1111 10 1123
Q ss_pred CCCCCCCCCcccEEecCcccccCch-hhh-----HHHHcCCCEEEEcC
Q 025797 167 PLQLPWAELGIDIVIEGTGVFVDGP-GAG-----KHIQAGAKKVIITA 208 (248)
Q Consensus 167 P~~i~W~~~GidiVVE~TG~F~~~e-~a~-----~HL~~GAKKVIISA 208 (248)
++.|.=.=-|+|.|+-+++.+.+.+ ... .=.++|+|++|.|.
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence 4433322238999999999774332 111 12236899998764
No 357
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=22.63 E-value=1e+02 Score=31.34 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
+-||.|.|+|++|++.++.+...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l 186 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL 186 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC
Confidence 46899999999999999988764
No 358
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.56 E-value=82 Score=31.34 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.0
Q ss_pred ceeeEEEeCCChhhHHHHHHHhhC
Q 025797 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 85 ~~vkV~INGFGRIGRlvlR~~~~~ 108 (248)
++.+|+|.|.|..|...+|++...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC
Confidence 467999999999999999998753
No 359
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=22.55 E-value=1.2e+02 Score=29.54 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=26.2
Q ss_pred ceeeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 85 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 85 ~~vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
+++||+|-|- |-.|-.++|++.+++ .+|+..+-
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~s 34 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILIS 34 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEee
Confidence 4579999985 999999999998874 67755553
No 360
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=22.53 E-value=1.9e+02 Score=26.07 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=29.9
Q ss_pred eeEEEeC-CChhhHHHHHHHhhCCCCCeEEEEEeCC----CChhhhhhhc
Q 025797 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS----GGVKNASHLL 131 (248)
Q Consensus 87 vkV~ING-FGRIGRlvlR~~~~~~~~~l~iVaIND~----~~~e~~ayLL 131 (248)
|||-|-| -|.||+.+.+.+.. ...++++++.. .+.+.+..++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~---~~~~v~~~~r~~~dl~d~~~~~~~~ 47 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE---RGYEVIATSRSDLDLTDPEAVAKLL 47 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT---TSEEEEEESTTCS-TTSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhh---CCCEEEEeCchhcCCCCHHHHHHHH
Confidence 6899999 69999999988754 35899999543 3444444443
No 361
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=22.50 E-value=1.7e+02 Score=26.18 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=26.9
Q ss_pred eEEEeC-CChhhHHHHHHHhhCCCCCeEEEE-EeCCCChhhhhhhcc
Q 025797 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVV-VNDSGGVKNASHLLK 132 (248)
Q Consensus 88 kV~ING-FGRIGRlvlR~~~~~~~~~l~iVa-IND~~~~e~~ayLLk 132 (248)
+|.|-| -|.||+.+++.+.++ ..+|++ +++....+.+..+++
T Consensus 7 ~vlVTGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~ 50 (322)
T PLN02986 7 LVCVTGASGYIASWIVKLLLLR---GYTVKATVRDLTDRKKTEHLLA 50 (322)
T ss_pred EEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCCcchHHHHHHHh
Confidence 577777 699999999988764 246654 444444444444443
No 362
>PLN00106 malate dehydrogenase
Probab=22.49 E-value=1.2e+02 Score=28.73 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=23.2
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCC-CCCeEEEEEeC
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRK-DSPLDVVVVND 120 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~-~~~l~iVaIND 120 (248)
.||+|-|- |+||..++-.+..+. ...+.++-||.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 58999999 999998887665432 12344444443
No 363
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.46 E-value=2.1e+02 Score=26.90 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.5
Q ss_pred eeeEEEeCC-ChhhHHHHHHHhh
Q 025797 86 KLKVAINGF-GRIGRNFLRCWHG 107 (248)
Q Consensus 86 ~vkV~INGF-GRIGRlvlR~~~~ 107 (248)
|.||+|-|- |.||-.++-.+..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~ 24 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh
Confidence 579999999 9999988776654
No 364
>PRK04148 hypothetical protein; Provisional
Probab=22.45 E-value=1.6e+02 Score=24.77 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=27.7
Q ss_pred CHHHHHHhhccccccCCCCCccccccceeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 59 SFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
++.+|++..+... ...||.+.|.| -|..+++.+.+. ..+|++|
T Consensus 3 ~i~~~l~~~~~~~-------------~~~kileIG~G-fG~~vA~~L~~~---G~~ViaI 45 (134)
T PRK04148 3 TIAEFIAENYEKG-------------KNKKIVELGIG-FYFKVAKKLKES---GFDVIVI 45 (134)
T ss_pred HHHHHHHHhcccc-------------cCCEEEEEEec-CCHHHHHHHHHC---CCEEEEE
Confidence 4667777655321 12478888999 787677766543 3677777
No 365
>PRK06046 alanine dehydrogenase; Validated
Probab=22.39 E-value=1.4e+02 Score=27.79 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=27.8
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
..+|+|.|.|.+||..++++... .+++.|.|-|.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 46899999999999999987643 36888888777
No 366
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.31 E-value=1.2e+02 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=24.8
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
.+|.|-|.|.+||.+++++.... --+|.++|-.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g--~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLG--VAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 47999999999999999887542 1356666654
No 367
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.14 E-value=1.2e+02 Score=28.00 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.0
Q ss_pred eeEEEeCCChhhHHHHHHHhhC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGR 108 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~ 108 (248)
+||+|.|-|.+|..++..+..+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~ 22 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR 22 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999887654
No 368
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=21.87 E-value=3e+02 Score=25.77 Aligned_cols=31 Identities=23% Similarity=0.149 Sum_probs=21.4
Q ss_pred eeEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEEe
Q 025797 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (248)
Q Consensus 87 vkV~INGF-GRIGRlvlR~~~~~~~~~l~iVaIN 119 (248)
-||-|+|+ ||+|..+++-+..- .-+ -+..||
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~-g~~-~v~~V~ 38 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY-GTN-IVGGVT 38 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC-CCC-EEEEEC
Confidence 47899997 99999888776543 222 444566
No 369
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=21.86 E-value=5.6e+02 Score=22.61 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=49.5
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeE-EEEEeCCCChhhhhhhccccCcCcccCceEEEecCCcEEECCeEEEEEecC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~-iVaIND~~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk~I~v~~~~ 165 (248)
-+|.|+|-|.+|+.+++++..+ .++ ++++.. +.+....+-++ |. + . +++...-... .+
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~---G~~~v~~~~~--~~~~~~~~~~~----g~---~-~-------~~~~~~~~~~-~~ 219 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLN---GASRVTVAEP--NEEKLELAKKL----GA---T-E-------TVDPSREDPE-AQ 219 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHc---CCcEEEEECC--CHHHHHHHHHh----CC---e-E-------EecCCCCCHH-HH
Confidence 3688899999999988877653 244 444432 23344434332 21 1 0 0111000000 00
Q ss_pred CCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEc
Q 025797 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (248)
Q Consensus 166 dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIIS 207 (248)
... ..-++|+|+||+|.=...+.+..+|..+.+-|.+.
T Consensus 220 --~~~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 220 --KED--NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred --HHh--cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEe
Confidence 001 12479999999874333455567787766555454
No 370
>PRK08017 oxidoreductase; Provisional
Probab=21.63 E-value=1.5e+02 Score=25.06 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=21.5
Q ss_pred eEEEeCC-ChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 88 KVAINGF-GRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 88 kV~INGF-GRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
+|.|-|- |.||+.++|.+..+ ..+++++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~---g~~v~~~ 32 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR---GYRVLAA 32 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC---CCEEEEE
Confidence 5888887 99999999988764 2355555
No 371
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=21.62 E-value=69 Score=28.86 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred cccEEecCcccccCchhhhHHHHcCCCEEEEcCC
Q 025797 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (248)
Q Consensus 176 GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAP 209 (248)
++|+|+|||+...-.+-..+-|++|. -|++-+|
T Consensus 37 ~vDaVviatp~~~H~e~a~~aL~aGk-hVl~~s~ 69 (229)
T TIGR03855 37 DVDIVVEAASQEAVKEYAEKILKNGK-DLLIMSV 69 (229)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCC-CEEEECC
Confidence 47778888877777776666677664 3444444
No 372
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.39 E-value=2.8e+02 Score=27.36 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCCcccEEecCcccccCchhhhHHHHcC-CCEEEEcCCC
Q 025797 173 AELGIDIVIEGTGVFVDGPGAGKHIQAG-AKKVIITAPA 210 (248)
Q Consensus 173 ~~~GidiVVE~TG~F~~~e~a~~HL~~G-AKKVIISAPs 210 (248)
++-|+||-+||+|.-..+..+-.--..| -+-|+|--+.
T Consensus 259 TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 259 TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 5689999999999887765443222234 3456665444
No 373
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.19 E-value=1.6e+02 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=23.1
Q ss_pred eEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC
Q 025797 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (248)
Q Consensus 88 kV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~ 121 (248)
-|.|.|+|++|+.++|.+..+ ..+ |.+.|.
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~---G~~-v~~~D~ 37 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ---GIP-FAVMDS 37 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC---CCe-EEEEeC
Confidence 489999999999999998865 244 445664
No 374
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=20.99 E-value=40 Score=29.27 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=51.1
Q ss_pred eeeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhh--hhccc-cCcCcccCceEEEecCCcEEECC-eEE
Q 025797 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNAS--HLLKY-DSLLGTFKADVKIVDNETISVDG-KLI 159 (248)
Q Consensus 86 ~vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~a--yLLkY-DStHGkf~g~V~v~e~~~L~inG-k~I 159 (248)
..||.|-|.|-+|--++..+... .+.-+.|-|. .+...+. +++.. |..-|+.+.++..+ .-..+|- -.|
T Consensus 19 ~s~VlviG~gglGsevak~L~~~---GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~--~L~~lNp~v~i 93 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA---GIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYE--FLQELNPNVKL 93 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc---CCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHH--HHHHHCCCCEE
Confidence 35899999999999999877532 3543334443 2222222 22332 23346655443211 0001221 133
Q ss_pred EEEecCC---CCCCCCCCCcccEEecCcccccCchhhhH
Q 025797 160 KVVSNRD---PLQLPWAELGIDIVIEGTGVFVDGPGAGK 195 (248)
Q Consensus 160 ~v~~~~d---P~~i~W~~~GidiVVE~TG~F~~~e~a~~ 195 (248)
..+.+.- +++.+.--...|+||+|+.-+..+..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~ 132 (198)
T cd01485 94 SIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVND 132 (198)
T ss_pred EEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 3333221 11222111257899999887655444433
No 375
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=20.87 E-value=88 Score=29.42 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=65.9
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEEeCC--CChhhhhhhccccCcCcccCceEEEecCCcEEECCe-EEEEE-
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVV- 162 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaIND~--~~~e~~ayLLkYDStHGkf~g~V~v~e~~~L~inGk-~I~v~- 162 (248)
-+|.|.|.|-.|--+.-++....-.++.+|---|. .+++.-.|-+. ++.|+-+-++.. +....||=. .|..+
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~Kv~vm~--eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPKVEVMK--ERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHHHHHHH--HHHHhhCCCceEeehH
Confidence 47999999999987777665322133443332222 34454444442 235665544432 223334431 12221
Q ss_pred ---ecCCCCCCCCCCCcccEEecCcccccCchhhhHHHHcCCCEEEEcCCCCCCCCCeE
Q 025797 163 ---SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTY 218 (248)
Q Consensus 163 ---~~~dP~~i~W~~~GidiVVE~TG~F~~~e~a~~HL~~GAKKVIISAPsk~~D~pti 218 (248)
.+.+-+++- ..+.||||||.--...+-.|-...+.---+||-|.=+.+.-+||-
T Consensus 107 ~f~t~en~~~~~--~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTr 163 (263)
T COG1179 107 DFITEENLEDLL--SKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTR 163 (263)
T ss_pred hhhCHhHHHHHh--cCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCce
Confidence 222223322 337899999999888877666655543346765543222234653
No 376
>PRK06223 malate dehydrogenase; Reviewed
Probab=20.51 E-value=1.4e+02 Score=27.10 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=18.1
Q ss_pred eeEEEeCCChhhHHHHHHHhh
Q 025797 87 LKVAINGFGRIGRNFLRCWHG 107 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~ 107 (248)
+||+|.|-|.+|..++..+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~ 23 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL 23 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh
Confidence 599999999999988876654
No 377
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.34 E-value=1.6e+02 Score=27.97 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=21.7
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCeEEEEE
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l~iVaI 118 (248)
.||+|.|.|-||+.++..+... .++|+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~ 36 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAW 36 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEE
Confidence 4799999999999988766542 4665544
No 378
>PLN00203 glutamyl-tRNA reductase
Probab=20.34 E-value=1.1e+02 Score=31.03 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=25.4
Q ss_pred eeEEEeCCChhhHHHHHHHhhCCCCCe-EEEEEeCC
Q 025797 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDS 121 (248)
Q Consensus 87 vkV~INGFGRIGRlvlR~~~~~~~~~l-~iVaIND~ 121 (248)
.+|+|.|.|.+|+++++.+..+ ++ +|+++|-.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~---G~~~V~V~nRs 299 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK---GCTKMVVVNRS 299 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC---CCCeEEEEeCC
Confidence 5899999999999999988764 23 56666654
Done!