Query 025798
Match_columns 248
No_of_seqs 292 out of 1216
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 2.9E-25 6.3E-30 188.3 9.5 136 38-189 46-185 (187)
2 PF02469 Fasciclin: Fasciclin 99.9 9.9E-23 2.2E-27 161.6 7.7 124 50-185 1-128 (128)
3 smart00554 FAS1 Four repeated 99.8 4.1E-20 8.8E-25 141.1 6.4 96 80-186 1-99 (99)
4 KOG1437 Fasciclin and related 99.2 2.5E-11 5.5E-16 120.7 5.5 131 38-185 372-507 (682)
5 KOG1437 Fasciclin and related 99.0 7.5E-10 1.6E-14 110.3 9.7 132 39-189 507-645 (682)
6 PF07172 GRP: Glycine rich pro 44.3 20 0.00043 27.6 2.4 21 1-21 1-21 (95)
7 COG5510 Predicted small secret 34.3 38 0.00082 22.5 2.1 13 1-13 1-13 (44)
8 PRK10081 entericidin B membran 31.6 40 0.00086 22.8 1.9 13 1-13 1-13 (48)
9 PRK09810 entericidin A; Provis 31.2 40 0.00088 22.0 1.9 23 1-24 1-23 (41)
10 PRK15348 type III secretion sy 28.0 53 0.0012 29.6 2.8 36 52-91 32-67 (249)
11 TIGR00247 conserved hypothetic 21.1 2.4E+02 0.0051 26.4 5.8 30 34-63 45-77 (342)
12 cd03035 ArsC_Yffb Arsenate Red 20.5 1.9E+02 0.004 22.2 4.2 59 41-113 27-85 (105)
13 COG1888 Uncharacterized protei 20.4 18 0.00039 27.9 -1.5 19 168-187 69-87 (97)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.9e-25 Score=188.33 Aligned_cols=136 Identities=24% Similarity=0.444 Sum_probs=116.3
Q ss_pred CcccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC-C---HHHHHHHhhhcc
Q 025798 38 GPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL-N---DQEKVALIQFHV 113 (248)
Q Consensus 38 ~~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L-s---~~~l~~LL~yHI 113 (248)
...+|.+...++++|++|..+++.++|.++|++ .++||||||||+||.+++.++++.| . .+.+..+|.|||
T Consensus 46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~-----~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHV 120 (187)
T COG2335 46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNE-----TGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHV 120 (187)
T ss_pred chhHHHHHHccCcchHHHHHHHHhhhhHHHhcC-----CCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEE
Confidence 467888988899999999999999999999998 8999999999999999999988886 2 356789999999
Q ss_pred cCceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEEeeeeeeCCCeEEEEeCcccCCCCCC
Q 025798 114 IPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLLPWDLF 189 (248)
Q Consensus 114 vp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V~~dI~a~nglvIh~IDkVLlP~~l~ 189 (248)
++|.+..+++.. .+.++|+.|. .++|...++.++|+. ..++..||.++|| +||+||+||+|+...
T Consensus 121 v~Gk~~~~~l~~-~~~v~t~~G~------~~~i~~~~~~~~Vn~---a~v~~~di~a~Ng-vIhvID~Vl~Pp~~~ 185 (187)
T COG2335 121 VEGKITAADLKS-SGSVKTVQGA------DLKIKVTGGGVYVND---ATVTIADINASNG-VIHVIDKVLIPPMDL 185 (187)
T ss_pred EcCcccHHHhhc-cccceeecCc------eEEEEEcCCcEEEee---eEEEeccEeccCc-EEEEEeeeccCCCcc
Confidence 999999999986 3468999887 455555556688872 3445789999999 999999999998753
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.88 E-value=9.9e-23 Score=161.59 Aligned_cols=124 Identities=24% Similarity=0.485 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHhhhcccCceecccccccCC
Q 025798 50 GQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQFHVIPTYVSLSQFQTVS 127 (248)
Q Consensus 50 ~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~LL~yHIvp~~~~~s~l~~~s 127 (248)
|+||+|.++|+.+|+.+.|++ +.+.+|||||+|+||++++.+..+.+ +.+++.++|+|||+++.++.+++....
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~----~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLND----SDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGC----SSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhc----CCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence 579999999999999999942 27899999999999999865544444 457789999999999999999998752
Q ss_pred cceec-CCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccCC
Q 025798 128 NPLRT-NAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLLP 185 (248)
Q Consensus 128 ~~v~T-lag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLlP 185 (248)
..++| +.|. .+.++....++.+.|++ .+.| ..++.++|| +||.||+||+|
T Consensus 77 ~~~~t~~~g~----~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG-~ih~id~vL~P 128 (128)
T PF02469_consen 77 QTLETLLNGQ----PLRVSSSPSNGTIYVNG---KARIVKSDIEASNG-VIHIIDDVLIP 128 (128)
T ss_dssp EEEEBSSTTC----EEEEEEEGGTTEEEECC---EEEESEEEEEESSE-EEEEESS-TSS
T ss_pred ccceeccCCC----EEEEEEEecCCceEecC---ceEEEeCCEEeCCE-EEEEECceECc
Confidence 36888 5554 34444442378899973 4665 589999999 99999999998
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.81 E-value=4.1e-20 Score=141.09 Aligned_cols=96 Identities=38% Similarity=0.547 Sum_probs=77.8
Q ss_pred EEEecCcHHHhcCCccccccCCHH-HHHHHhhhcccCceecccccccCCcceecCCCCCCCceeeEEEEEeC--CEEEEe
Q 025798 80 TLFAPTDNAFSSLSSGTLNSLNDQ-EKVALIQFHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFG--NSVNIS 156 (248)
Q Consensus 80 TIFAPtD~AF~~l~~~~l~~Ls~~-~l~~LL~yHIvp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g--~~V~v~ 156 (248)
|||||+|+||+++..+.++.+..+ .++++|+|||++++++.++|.. ...++|+.|. .+.++..+ +.+.++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g~------~l~v~~~~~~~~i~in 73 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAGS------KLRVTRSGDSGTVTVN 73 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCCC------EEEEEEeCCCCeEEEc
Confidence 899999999999987655566433 7899999999999999999986 3578999865 46666655 778886
Q ss_pred cCccccEEeeeeeeCCCeEEEEeCcccCCC
Q 025798 157 SGITNTSVSGTVYTDGQLAVYQVDKVLLPW 186 (248)
Q Consensus 157 tG~~~a~V~~dI~a~nglvIh~IDkVLlP~ 186 (248)
. ..++..|+.++|| +||+||+||+|+
T Consensus 74 ~---~~v~~~di~~~nG-vih~Id~vL~P~ 99 (99)
T smart00554 74 G---ARIVEADIAATNG-VVHVIDRVLLPP 99 (99)
T ss_pred c---eEEEECCEecCCe-EEEEECceeCCC
Confidence 3 2345689999999 999999999985
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.17 E-value=2.5e-11 Score=120.68 Aligned_cols=131 Identities=20% Similarity=0.289 Sum_probs=100.4
Q ss_pred CcccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHhhhcccCce
Q 025798 38 GPTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHVIPTY 117 (248)
Q Consensus 38 ~~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls~~~l~~LL~yHIvp~~ 117 (248)
...+++++..++. -|++.+++.+-++.+.|.. ++.+|+|+|+|++|+.+.+.. .+...+++|+|||++.+
T Consensus 372 ~~~~l~~La~e~~-~st~~rlv~elgll~~L~~-----n~e~t~~lp~n~~fd~~~~~~----~r~l~~qIL~~HII~~~ 441 (682)
T KOG1437|consen 372 SLKNLMSLAREDE-ISTSMRLVAELGLLTALAP-----NDEATLLLPTNNLFDDLTPLE----SRRLAEQILYNHIIPEY 441 (682)
T ss_pred hHHHHHHHHhccc-ccHHHHHHHhccceEEEcC-----CCceEEeeehhhhccCCChhh----hHHHHHHHHHHhCcchh
Confidence 4667888777665 5999999999998887776 556999999999999976532 23337899999999999
Q ss_pred ecccccccCCcceecCCCCCCCceeeEEEEEeCCE-----EEEecCccccEEeeeeeeCCCeEEEEeCcccCC
Q 025798 118 VSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNS-----VNISSGITNTSVSGTVYTDGQLAVYQVDKVLLP 185 (248)
Q Consensus 118 ~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~-----V~v~tG~~~a~V~~dI~a~nglvIh~IDkVLlP 185 (248)
.+.++...+.+.++|+.+. ++..-+.+..+. +.++ | ...++..|+...|| +||.||+|+.|
T Consensus 442 ~~~~~~y~~~~~v~t~g~~----~l~~fv~r~~~s~~~t~i~~~-~-~~~Ii~aDi~~~nG-vvH~id~vl~p 507 (682)
T KOG1437|consen 442 LTSSSMYNGQTTVRTLGKN----KLLYFVYRHSVSANVTDILIG-N-EACIIEADISVKNG-VVHIIDRVLDP 507 (682)
T ss_pred hhhhhhhcccceeeccCCe----EEEEEEecccccccceeeecc-c-eeeEEecccceecC-ceEEeeEEcCc
Confidence 9999988876688888775 444444443222 3333 3 34456789999999 99999999999
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.04 E-value=7.5e-10 Score=110.32 Aligned_cols=132 Identities=21% Similarity=0.326 Sum_probs=93.2
Q ss_pred cccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCC-HHHHHHHhhhcccCce
Q 025798 39 PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLN-DQEKVALIQFHVIPTY 117 (248)
Q Consensus 39 ~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls-~~~l~~LL~yHIvp~~ 117 (248)
|.++.+.|++++++|.|.++++..++.++|+. .+.+|+|+|||+||.+...+... +. ...+..+++||++++.
T Consensus 507 p~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~-----~~~~t~fvPt~ka~~~~~~~~~~-~~~~~~l~~~l~yH~v~~~ 580 (682)
T KOG1437|consen 507 PVSLMEDLKTDGRISGTVQGLEGVLLPEELTP-----EGNYTLFVPTNKAWQKSTKDEKS-LFHKKALQDFLKYHLVPGQ 580 (682)
T ss_pred cccHHHHHhhccchhhhHHhhhhcCChhhhcc-----CCceEEEeecccccccCCcchhh-cchHHHHHHHHHhccccce
Confidence 38999999999999999999999999999965 89999999999999997765322 43 3568999999999987
Q ss_pred ecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEe----cCccc-cE-EeeeeeeCCCeEEEEeCcccCCCCCC
Q 025798 118 VSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNIS----SGITN-TS-VSGTVYTDGQLAVYQVDKVLLPWDLF 189 (248)
Q Consensus 118 ~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~----tG~~~-a~-V~~dI~a~nglvIh~IDkVLlP~~l~ 189 (248)
+. +.-.+.+..+. .+.++. .++.+.+. .|..+ .+ +..++...|| ++|+||+||.|++++
T Consensus 581 ~~---ls~~~~~~v~~-------~~k~s~--~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~-~~h~i~~vl~p~~l~ 645 (682)
T KOG1437|consen 581 SR---LSLGSSPYVMI-------QVKLSL--RGDHLFFSLVNPRGDVNKERLVGIDIMGTNG-VVHVIDLVLKPPDLP 645 (682)
T ss_pred ee---eecccccceee-------eeeEEE--ecccEEeeeeccccceeeeeeeccceeeecc-eeEEEEEEcccCcch
Confidence 65 21111111111 012222 22222221 23222 33 4579999999 999999999998664
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.33 E-value=20 Score=27.59 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=8.9
Q ss_pred CccchhhHHHHHHHHHHHhhc
Q 025798 1 MTRKQHFFAFSLVLLFLLHCT 21 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (248)
|--|.+|+..++|.++||.++
T Consensus 1 MaSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHh
Confidence 554544444333323334343
No 7
>COG5510 Predicted small secreted protein [Function unknown]
Probab=34.30 E-value=38 Score=22.50 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=7.7
Q ss_pred CccchhhHHHHHH
Q 025798 1 MTRKQHFFAFSLV 13 (248)
Q Consensus 1 m~~~~~~~~~~~~ 13 (248)
|||+..++.++++
T Consensus 1 mmk~t~l~i~~vl 13 (44)
T COG5510 1 MMKKTILLIALVL 13 (44)
T ss_pred CchHHHHHHHHHH
Confidence 7887555554444
No 8
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=31.57 E-value=40 Score=22.85 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=7.6
Q ss_pred CccchhhHHHHHH
Q 025798 1 MTRKQHFFAFSLV 13 (248)
Q Consensus 1 m~~~~~~~~~~~~ 13 (248)
|||+.+.+.++++
T Consensus 1 MmKk~i~~i~~~l 13 (48)
T PRK10081 1 MVKKTIAAIFSVL 13 (48)
T ss_pred ChHHHHHHHHHHH
Confidence 8888555544433
No 9
>PRK09810 entericidin A; Provisional
Probab=31.19 E-value=40 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=10.3
Q ss_pred CccchhhHHHHHHHHHHHhhcccc
Q 025798 1 MTRKQHFFAFSLVLLFLLHCTNTV 24 (248)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~ 24 (248)
|||+.+++. ++.++.+--|.|+.
T Consensus 1 mMkk~~~l~-~~~~~~L~aCNTv~ 23 (41)
T PRK09810 1 MMKRLIVLV-LLASTLLTGCNTAR 23 (41)
T ss_pred ChHHHHHHH-HHHHHHHhhhhhcc
Confidence 788843332 22222233366543
No 10
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=27.99 E-value=53 Score=29.64 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=24.2
Q ss_pred hHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhc
Q 025798 52 FTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSS 91 (248)
Q Consensus 52 fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~ 91 (248)
-......|++.|+..+... +.+|.||.+|.+++-+.
T Consensus 32 A~~I~a~L~~~gI~y~~~~----~~~G~tI~Vp~~~~~~A 67 (249)
T PRK15348 32 ANQMLALLMQHHIDAEKKQ----EEDGVTLRVEQSQFINA 67 (249)
T ss_pred HHHHHHHHHHcCCCceEee----CCCCeEEEecHHHHHHH
Confidence 3556666667776654431 25789999999996654
No 11
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=21.05 E-value=2.4e+02 Score=26.36 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=18.3
Q ss_pred CCCCCcccHHHHHHhCC---ChHHHHHHHHHCC
Q 025798 34 PGPPGPTNVTKVLEKAG---QFTLFIRLLKATS 63 (248)
Q Consensus 34 ~~~~~~~nI~~iL~~~~---~fS~f~~lL~~tg 63 (248)
+...+...|.+.|++.+ +=..|..+++..+
T Consensus 45 p~G~s~~~Ia~~L~~~GvI~s~~~F~~~ak~~~ 77 (342)
T TIGR00247 45 EKGTGVSKIAKELKKQKLIKSEKLLQYLLKIKG 77 (342)
T ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHhcC
Confidence 34456788999998765 2234555555444
No 12
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=20.46 E-value=1.9e+02 Score=22.16 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=38.3
Q ss_pred cHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccCCHHHHHHHhhhcc
Q 025798 41 NVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSLNDQEKVALIQFHV 113 (248)
Q Consensus 41 nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~Ls~~~l~~LL~yHI 113 (248)
...++++..+.-..+.++++..|+.+.++. . ...|..+.....+.++++++.++|.-|-
T Consensus 27 ~~~di~~~p~s~~eL~~~l~~~g~~~li~~-----~---------~~~yk~l~l~~~~~~s~~e~~~~l~~~p 85 (105)
T cd03035 27 TFHDYRKDGLDAATLERWLAKVGWETLLNK-----R---------GTTWRKLDDAQKAALDAAKAIALMLEHP 85 (105)
T ss_pred EEEecccCCCCHHHHHHHHHHhChHHHHcc-----C---------chHHHhCChhhhccCCHHHHHHHHHhCc
Confidence 455566666778888888888887666664 2 2456666543234577777777776654
No 13
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.37 E-value=18 Score=27.85 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=13.2
Q ss_pred eeeCCCeEEEEeCcccCCCC
Q 025798 168 VYTDGQLAVYQVDKVLLPWD 187 (248)
Q Consensus 168 I~a~nglvIh~IDkVLlP~~ 187 (248)
+..-+| +||.||.|..=..
T Consensus 69 iE~~Gg-~IHSiDevvaGk~ 87 (97)
T COG1888 69 IEELGG-AIHSIDEVVAGKR 87 (97)
T ss_pred HHHcCC-eeeehhhhhhcce
Confidence 444466 9999999875433
Done!