Query 025798
Match_columns 248
No_of_seqs 292 out of 1216
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7d_A Fasciclin-like protein; 100.0 8.5E-30 2.9E-34 206.1 4.8 131 39-187 2-137 (137)
2 2vxp_A Transforming growth fac 100.0 2E-28 6.9E-33 196.8 12.8 129 40-184 2-132 (132)
3 1nyo_A Immunogenic protein MPT 99.9 2.4E-28 8.2E-33 203.6 6.0 130 38-187 26-163 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.9 1.8E-24 6.1E-29 196.8 8.3 143 39-191 158-315 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.9 2.3E-23 7.9E-28 189.5 9.5 137 39-187 5-158 (324)
6 3bpd_A Uncharacterized protein 16.4 17 0.00059 27.2 -1.3 16 168-184 69-84 (100)
7 2raq_A Conserved protein MTH88 15.9 14 0.00048 27.5 -1.9 19 168-187 69-87 (97)
8 4dz1_A DALS D-alanine transpor 12.8 51 0.0017 26.6 0.4 8 1-8 1-8 (259)
9 2lif_A Core protein P21; signa 15.0 52 0.0018 18.8 0.0 16 10-25 6-21 (27)
10 2xk0_A Polycomb protein PCL; t 9.6 1.1E+02 0.0036 21.4 1.1 9 193-201 5-13 (69)
No 1
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.96 E-value=8.5e-30 Score=206.08 Aligned_cols=131 Identities=27% Similarity=0.453 Sum_probs=114.2
Q ss_pred cccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC----CHHHHHHHhhhccc
Q 025798 39 PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL----NDQEKVALIQFHVI 114 (248)
Q Consensus 39 ~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L----s~~~l~~LL~yHIv 114 (248)
+.||+++|+++++||+|.++|+++|+.+.|++ .+++|||||+|+||++++.+.++.| +.+.++++|+|||+
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv 76 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKG-----DGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVV 76 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTS-----SSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcC-----CCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence 46899999999999999999999999999987 7899999999999999988777777 34678999999999
Q ss_pred CceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccCCCC
Q 025798 115 PTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLLPWD 187 (248)
Q Consensus 115 p~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLlP~~ 187 (248)
++.++.++|..+ ..++|+.|. .|+|+..+| ++|++ ++| ..|+.++|| +||+||+||+|+.
T Consensus 77 ~~~~~~~~l~~~-~~~~tl~G~------~l~v~~~~g-v~vn~----a~v~~~di~~~NG-vIHvID~VL~P~s 137 (137)
T 1w7d_A 77 PGEVMSSDLTEG-MTAETVEGG------ALTVTLEGG-PKVNG----VSISQPDVDASNG-VIHVIDGVLMPGA 137 (137)
T ss_dssp ESCCCTTTSCSS-EEEECTTSC------EEEEECTTS-CEETT----EECSBCCCBCSSS-EEEBCSSCCSSCC
T ss_pred CcEEcHHHhcCC-CeeeccCCc------eEEEEecCC-EEEeC----cEEEECCeecCCe-EEEEECeeeCCCC
Confidence 999999999864 468999876 677877777 88863 554 679999999 9999999999974
No 2
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.96 E-value=2e-28 Score=196.83 Aligned_cols=129 Identities=19% Similarity=0.368 Sum_probs=111.6
Q ss_pred ccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHhhhcccCce
Q 025798 40 TNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQFHVIPTY 117 (248)
Q Consensus 40 ~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~LL~yHIvp~~ 117 (248)
.||+++|+++++||+|.++|+++|+.+.|++ .+++|||||+|+||++++.+.++.| ++++++++|+|||+++.
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~ 76 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNR-----EGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI 76 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHS-----SCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcC-----CCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce
Confidence 4899999999999999999999999999997 7899999999999999988766665 57789999999999999
Q ss_pred ecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEEeeeeeeCCCeEEEEeCcccC
Q 025798 118 VSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSVSGTVYTDGQLAVYQVDKVLL 184 (248)
Q Consensus 118 ~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V~~dI~a~nglvIh~IDkVLl 184 (248)
++.+++.. ...++|+.|+ .|.|+..++.++|++ ..++..|+.++|| +||+||+||+
T Consensus 77 ~~~~~l~~-~~~~~tl~G~------~l~v~~~~~~v~vn~---a~v~~~di~a~NG-vIHvID~VLl 132 (132)
T 2vxp_A 77 LVSGGIGA-LVRLKSLQGD------KLEVSLKNNVVSVNK---EPVAEPDIMATNG-VVHVITNVLQ 132 (132)
T ss_dssp CCSTTCSS-CEEEEBTTSS------EEEEEEETTEEEESS---CBEEEEEEEETTE-EEEEESSCC-
T ss_pred eehhhccC-CceEecCCCC------EEEEEEeCCEEEEec---cEEEEcceecCCE-EEEEECcEeC
Confidence 98888865 3478999876 577888888999973 2345689999999 9999999985
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.94 E-value=2.4e-28 Score=203.57 Aligned_cols=130 Identities=28% Similarity=0.445 Sum_probs=113.4
Q ss_pred CcccHHHHHHhCCChHHHHHHHH-----HCCcHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHHhh
Q 025798 38 GPTNVTKVLEKAGQFTLFIRLLK-----ATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVALIQ 110 (248)
Q Consensus 38 ~~~nI~~iL~~~~~fS~f~~lL~-----~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~LL~ 110 (248)
...+|+++|+++++||+|.++|+ .+|+.+.|++ .+ +|||||+|+||++++.+.++.| +.++++++|+
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~-----~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~ 99 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNS-----GQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT 99 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-----SS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCC-----CC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHH
Confidence 46799999999999999999999 9999999986 56 9999999999999987767666 3467899999
Q ss_pred hcccCceecccccccCCcceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCcccCCCC
Q 025798 111 FHVIPTYVSLSQFQTVSNPLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVLLPWD 187 (248)
Q Consensus 111 yHIvp~~~~~s~l~~~s~~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVLlP~~ 187 (248)
|||+++.++.++|. +.++|+.|. .|+|+..++.|+|++ ++| ..||.+.|| +||+||+||+|+.
T Consensus 100 yHvv~g~~~~~~l~---g~~~Tl~G~------~l~v~~~~~~v~vn~----a~V~~~di~a~NG-vIHvID~VL~P~~ 163 (163)
T 1nyo_A 100 YHVVAGQTSPANVV---GTRQTLQGA------SVTVTGQGNSLKVGN----ADVVCGGVSTANA-TVYMIDSVLMPPA 163 (163)
T ss_dssp HTEEESCCCTTTSC---EEEECTTSS------EEEEEECSSCEEETT----EECSSBCCCCSSE-EEBCBSSCCCCCC
T ss_pred hceECCEEcHHHhC---CccccCCCC------EEEEEEECCEEEEec----cEEEECceEcCCE-EEEEECcEeCCCC
Confidence 99999999999997 478999875 678888888899863 554 579999999 9999999999973
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.90 E-value=1.8e-24 Score=196.85 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=115.0
Q ss_pred cccHHHHHHhCCChHHHHHHHHHCCcHHHHhhhccCCCCCeEEEecCcHHHhcCC----ccccccCCH---HHHHHHhhh
Q 025798 39 PTNVTKVLEKAGQFTLFIRLLKATSVADQIDHQLNDTNNGMTLFAPTDNAFSSLS----SGTLNSLND---QEKVALIQF 111 (248)
Q Consensus 39 ~~nI~~iL~~~~~fS~f~~lL~~tgl~~~L~~~L~~s~~~~TIFAPtD~AF~~l~----~~~l~~Ls~---~~l~~LL~y 111 (248)
..++.++|+++++||+|.++++.+|+.+.|+. +.+++|||||+|+||+++. .+.++.|.+ ++++++|+|
T Consensus 158 ~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~----~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~y 233 (324)
T 1o70_A 158 YTTVLGKLESDPMMSDTYKMGKFSHFNDQLNN----TQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILER 233 (324)
T ss_dssp CSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC----SSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHT
T ss_pred hhhHHHHhhcCchHHHHHHHHHhhCHHHHhCC----CCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHh
Confidence 46899999999999999999999998888763 3689999999999999984 333444533 478999999
Q ss_pred cccCc--eecccccccCCc-----ceecCCCCCCCceeeEEEEEeCCEEEEecCccccEE-eeeeeeCCCeEEEEeCccc
Q 025798 112 HVIPT--YVSLSQFQTVSN-----PLRTNAGDSSRFEYPLNVTTFGNSVNISSGITNTSV-SGTVYTDGQLAVYQVDKVL 183 (248)
Q Consensus 112 HIvp~--~~~~s~l~~~s~-----~v~Tlag~~~~g~~~L~Vt~~g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDkVL 183 (248)
||+++ .|+.++|...++ .++|+. + .+.++++..|+.+.|+.+..++.| ..|+.+.|| +||+||+||
T Consensus 234 Hvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~----~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NG-vIHvID~VL 307 (324)
T 1o70_A 234 HLAISDKEYTMKDLVKFSQESGSVILPTFR-D----SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNG-IIHVIDYPL 307 (324)
T ss_dssp TEEEESSCCCHHHHHHHHHHSSSEEEECSS-S----EEEEEEEEETTEEEEEETTEEEEEEEEEEEETTE-EEEEESSCS
T ss_pred cEeCCcceEcHHHHhhhccCCCeeeeeccC-C----cEEEEEEecCCEEEEEecCceeEEEEcccccCCC-eEEEeceee
Confidence 99998 888888875332 388987 4 567777767889999755445655 689999999 999999999
Q ss_pred CCCCCCCC
Q 025798 184 LPWDLFGA 191 (248)
Q Consensus 184 lP~~l~~~ 191 (248)
+|++....
T Consensus 308 ~P~~~~~~ 315 (324)
T 1o70_A 308 LEEKDVVV 315 (324)
T ss_dssp CCTTTTC-
T ss_pred cCCccccc
Confidence 99987543
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.89 E-value=2.3e-23 Score=189.50 Aligned_cols=137 Identities=20% Similarity=0.321 Sum_probs=104.4
Q ss_pred cccHHHHHH------hCCChHHHHHHHHHCC--cHHHHhhhccCCCCCeEEEecCcHHHhcCCccccccC--CHHHHHHH
Q 025798 39 PTNVTKVLE------KAGQFTLFIRLLKATS--VADQIDHQLNDTNNGMTLFAPTDNAFSSLSSGTLNSL--NDQEKVAL 108 (248)
Q Consensus 39 ~~nI~~iL~------~~~~fS~f~~lL~~tg--l~~~L~~~L~~s~~~~TIFAPtD~AF~~l~~~~l~~L--s~~~l~~L 108 (248)
..||+++|+ ++++||+|.++|+++| +.+.|++ .+++|||||+|+||.++. ++.| +++.++++
T Consensus 5 ~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~-----~~~~TvFAPtn~Af~~~~---~~~l~~~~~~l~~i 76 (324)
T 1o70_A 5 DTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSN---INNVLRDRNKMRQI 76 (324)
T ss_dssp --------------CCHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTC---THHHHTCHHHHHHH
T ss_pred hhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcC-----CCCeEEEEEChHhhhccc---HhhhhCCHHHHHHH
Confidence 568999998 6889999999999999 9999987 789999999999998763 3333 56789999
Q ss_pred hhhcccCceecccccccCCc----ceecCCCCCCCceeeEEEEEe--CCEEEEecCccccEE-eeeeeeCCCeEEEEeCc
Q 025798 109 IQFHVIPTYVSLSQFQTVSN----PLRTNAGDSSRFEYPLNVTTF--GNSVNISSGITNTSV-SGTVYTDGQLAVYQVDK 181 (248)
Q Consensus 109 L~yHIvp~~~~~s~l~~~s~----~v~Tlag~~~~g~~~L~Vt~~--g~~V~v~tG~~~a~V-~~dI~a~nglvIh~IDk 181 (248)
|+|||++++++.++|..+.+ .++|+.|+. .+.++++.. ++.+.+++|..+++| ..|+.++|| +||+||+
T Consensus 77 L~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~~---~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NG-vIhvID~ 152 (324)
T 1o70_A 77 LNMHIIKDRLNVDKIRQKNANLIAQVPTVNNNT---FLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNG-YVHIIDH 152 (324)
T ss_dssp HHHTEESSCCCHHHHHHHTSSSCCCEEBSSTTC---EEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSE-EEEEESS
T ss_pred HHhcEeCCeecHHHHhhccCCCceEEEcCCCCc---eEEEEEeecCCceEEEEcCCceeEEEEeccccccCc-EEEEEch
Confidence 99999999999999876532 688998862 245676643 356888876555654 689999999 9999999
Q ss_pred ccCCCC
Q 025798 182 VLLPWD 187 (248)
Q Consensus 182 VLlP~~ 187 (248)
||.|+.
T Consensus 153 VL~pp~ 158 (324)
T 1o70_A 153 VLGVPY 158 (324)
T ss_dssp CTTSCC
T ss_pred hhhhch
Confidence 999864
No 6
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=16.37 E-value=17 Score=27.20 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=11.3
Q ss_pred eeeCCCeEEEEeCcccC
Q 025798 168 VYTDGQLAVYQVDKVLL 184 (248)
Q Consensus 168 I~a~nglvIh~IDkVLl 184 (248)
|.--+| +||.||.|.-
T Consensus 69 IE~~Gg-vIHSIDEVva 84 (100)
T 3bpd_A 69 IEDMGG-VIHSVDEVVA 84 (100)
T ss_dssp HHTTTC-EEEEEEEEEE
T ss_pred HHHcCC-eEEeeeeeee
Confidence 344456 9999998743
No 7
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=15.94 E-value=14 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=13.0
Q ss_pred eeeCCCeEEEEeCcccCCCC
Q 025798 168 VYTDGQLAVYQVDKVLLPWD 187 (248)
Q Consensus 168 I~a~nglvIh~IDkVLlP~~ 187 (248)
|.--+| +||.||.|.-=..
T Consensus 69 IE~~Gg-~IHSIDEVvaG~~ 87 (97)
T 2raq_A 69 IESYGG-SIHSVDEVVAGRT 87 (97)
T ss_dssp HHHTTC-EEEEEEEEEEESS
T ss_pred HHHcCC-eEEeeeeeeecce
Confidence 444566 9999998764333
No 8
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=12.83 E-value=51 Score=26.64 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=0.0
Q ss_pred CccchhhH
Q 025798 1 MTRKQHFF 8 (248)
Q Consensus 1 m~~~~~~~ 8 (248)
|||+..++
T Consensus 1 Mmk~~~~~ 8 (259)
T 4dz1_A 1 MLSKKFGL 8 (259)
T ss_dssp --------
T ss_pred CcHHHHHH
Confidence 78774433
No 9
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=15.01 E-value=52 Score=18.80 Aligned_cols=16 Identities=50% Similarity=0.804 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhccccc
Q 025798 10 FSLVLLFLLHCTNTVV 25 (248)
Q Consensus 10 ~~~~~~~~~~~~~~~~ 25 (248)
|+++++-+|+|.+.-+
T Consensus 6 fsiFlLaLlscLt~Pa 21 (27)
T 2lif_A 6 FSIFLLALLSCITVPV 21 (27)
Confidence 3444334455655433
No 10
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=9.58 E-value=1.1e+02 Score=21.36 Aligned_cols=9 Identities=56% Similarity=1.269 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 025798 193 PPAPAPAPE 201 (248)
Q Consensus 193 ~pa~ap~~~ 201 (248)
||+|||+|+
T Consensus 5 pp~~a~~pa 13 (69)
T 2xk0_A 5 PPVAAPSPA 13 (69)
T ss_dssp CSSSSSCCC
T ss_pred CCCCCCCcc
Confidence 344444443
Done!