BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025800
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 114 VEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEI 173
++ + DC CRICH +G + C C L A HK C E W CE+
Sbjct: 55 LDSQSDCPFCRICH------EGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCEL 108
Query: 174 CNS 176
C++
Sbjct: 109 CHT 111
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 125 ICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179
IC +C E +E P C+C +L H QC W + N C++C I R
Sbjct: 14 ICWICREEVGNEGIHP----CACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYR 64
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 114 VEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEI 173
++ DC CRICH +G + C C L A HK C E W CE+
Sbjct: 55 LDTPSDCPFCRICH------EGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCEL 108
Query: 174 CNS 176
C++
Sbjct: 109 CHT 111
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 114 VEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEI 173
+E D CRICH E + ES + C C L A HK C E W CE+
Sbjct: 55 LETPSDGPFCRICH---EGANGES---LLSPCGCSGTLGAVHKSCLERWLSSSNTSYCEL 108
Query: 174 CNS 176
C++
Sbjct: 109 CHT 111
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 16/110 (14%)
Query: 69 SSVSSSSSSDCSVEI---ESAVHEIEIKVHLATAAAAATTTTTNNNNRVEGERDCRICRI 125
S+ S + DCS + V ++ K + T TT + N+R +CRI
Sbjct: 19 SAPSGKTVEDCSSLVNGQPQYVMQVSAKDGQLLSTVVRTLTTQSFNDR-------PMCRI 71
Query: 126 CHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
CH E ++ E + C C L H+ C E W CE+C+
Sbjct: 72 CH---EGSTQED---LLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 115
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 126 CHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAGAT 185
C +C + S +P C+C DL H++C + W + G K C+ C + V
Sbjct: 132 CWICRDGES----LPEARYCNCYGDLQYCHEECLKTWISMSGEKKCKFCQT-PYKVNRQL 186
Query: 186 EIETAELSNEVNNANATSSISAAIGHGETRSIWHGHRFLNFLLAC 230
++ L + + I+ IG G + W F ++ C
Sbjct: 187 SLKRG-LPGYWDRDDRFVFIAGFIGMGTILAGWIASFFYLLVVLC 230
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 145 CSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
C+CK++ HK C E W N C+ICN
Sbjct: 25 CNCKNEFKIVHKNCLEEWINFSHNTKCKICN 55
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 117 ERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
+ D ICRICH E + E + C C L HK C E W CE+C++
Sbjct: 58 QSDGPICRICH---EGGNGER---LLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHT 111
Query: 177 ---IARNVAGATE 186
+ R TE
Sbjct: 112 EFAVERRPRPVTE 124
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR--------GNKTCEIC 174
CRIC + S S+ P+ C C L H++C + W K++ KTCE+C
Sbjct: 659 CRICQIAGGSPSN----PLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 117 ERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
+ D ICRICH E + E + C C L HK C E W CE+C++
Sbjct: 58 QSDGPICRICH---EGGNGER---LLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHT 111
Query: 177 ---IARNVAGATE 186
+ R TE
Sbjct: 112 EFAVERRPRPVTE 124
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
ICRICH + S P+ C C L H+ C + W K + CE+C
Sbjct: 77 ICRICHCEGDDES-----PLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCK 125
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 97 ATAAAAATTTTTNNNNRVEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHK 156
A +A + T+ T +N ICRICH + S P+ C C L H+
Sbjct: 58 APVSAFSRTSVTPSNQD--------ICRICHCEGDDES-----PLITPCHCTGSLHFVHQ 104
Query: 157 QCAEAWFKIRGNKTCEICN 175
C + W K + CE+C
Sbjct: 105 ACLQQWIKSSDTRCCELCK 123
>sp|Q9WTR2|M3K6_MOUSE Mitogen-activated protein kinase kinase kinase 6 OS=Mus musculus
GN=Map3k6 PE=1 SV=4
Length = 1291
Score = 35.8 bits (81), Expect = 0.31, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
Query: 57 EMSLGGGDSRRVSSVSSSSSSDCSVEIESAVHEIEIKVHLATAAAAATTTTTNNNNRVEG 116
E+ L ++ R+ + + +C ++ A+H + + A+ T + N V
Sbjct: 1164 ELGLLRAETDRLRDLLAEKERECQALVQQALHRVHAETRKYAPASETPATLPKDQNLVRW 1223
Query: 117 ERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
++ + L SH + L C+ +DDL + +IRG C I +
Sbjct: 1224 LQELSVDPATIQTLL--SHSFTLQTLLTCATQDDL---------VYTRIRGGMVCRIWRA 1272
Query: 177 IARNVAGATEI 187
I AGAT +
Sbjct: 1273 ILAQRAGATSV 1283
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 69 SSVSSSSSSDCSVEI---ESAVHEIEIKVHLATAAAAATTTTTNNNNRVEGERDCRICRI 125
S+ S + DCS + V ++ K + T TT ++ N D +CRI
Sbjct: 19 SAPSGKTVEDCSSLVNGQPQYVMQVSAKDGQLLSTVVRTLTTQSSFN------DHPMCRI 72
Query: 126 CHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
CH E ++ E + C C L H+ C E W CE+C+
Sbjct: 73 CH---EGSTQED---LLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 116
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 95 HLATAAAAATTTTTNNNNRV---EGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDL 151
+++ A++ T T + +R+ +D ICRICH ES P+ C C L
Sbjct: 51 NISKASSPTTGTAPRSQSRLSVCPSTQD--ICRICHC---EGDEES--PLITPCRCTGTL 103
Query: 152 AAAHKQCAEAWFKIRGNKTCEICN 175
H+ C W K + CE+C
Sbjct: 104 RFVHQSCLHQWIKSSDTRCCELCK 127
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
ICRICH ES P+ C C L H+ C W K + CE+C
Sbjct: 79 ICRICHC---EGDEES--PLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCK 127
>sp|Q9FGI1|LTN1_ARATH E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana
GN=At5g58410 PE=3 SV=1
Length = 1873
Score = 35.4 bits (80), Expect = 0.39, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 109 NNNNRVEGERDCRIC-RICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG 167
N++ EG DC IC + H+ S +P + +CK HK C + WF
Sbjct: 1812 NSDKEFEGVEDCPICYSVIHIGNHS------LPRRACVTCKYKF---HKACLDKWFYTSN 1862
Query: 168 NKTCEICNS 176
K C +C S
Sbjct: 1863 KKLCPLCQS 1871
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
ICRICH + S P+ C C L H+ C + W K + CE+C
Sbjct: 79 ICRICHCEGDDES-----PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 127
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 35.4 bits (80), Expect = 0.41, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
C IC+ L + + +P + +CK+ H C WF+ GN TC +C S
Sbjct: 1508 CAICYSILHAVDRK--LPSKTCPTCKNKF---HGACLYKWFRSSGNNTCPLCRS 1556
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 35.4 bits (80), Expect = 0.43, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGN--------KTCEIC 174
CRIC + S ++ P+ C C L H++C + W K++ KTCE+C
Sbjct: 641 CRICQIAGGSPAN----PLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMC 696
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
ICRICH ES P+ C C L H+ C + W K + CE+C
Sbjct: 52 ICRICHC---EGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 100
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
D +CRICH E +S E + C C L H+ C E W CE+C+
Sbjct: 67 DRPMCRICH---EGSSQED---LLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 35.0 bits (79), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
ICRICH ES P+ C C L H+ C + W K + CE+C
Sbjct: 52 ICRICHC---EGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 100
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
D +CRICH E +S E + C C L H+ C E W CE+C+
Sbjct: 67 DRPMCRICH---EGSSQED---LLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 117 ERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN- 175
+ D ICRICH E + + C C L HK C E W CE+C+
Sbjct: 58 QSDRPICRICH---EGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHT 114
Query: 176 --SIARNVAGATE 186
+I R TE
Sbjct: 115 EFTIERRPRPLTE 127
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
D +CRICH E +S E + C C L H+ C E W CE+C+
Sbjct: 67 DRPMCRICH---EGSSQED---LLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175
D +CRICH E +S E + C C L H+ C E W CE+C+
Sbjct: 67 DRPMCRICH---EGSSQED---LLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCH 117
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNK--------TCEI 173
+CRIC + S+S+ P C C L H++C + W + + N TCE+
Sbjct: 552 LCRICQMAAASSSNLLIEP----CKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCEL 607
Query: 174 C 174
C
Sbjct: 608 C 608
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 29/142 (20%)
Query: 125 ICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAGA 184
+C +C + S E C+CK++ H +C + W + ++C++CN N+
Sbjct: 4 VCWICKDDYSIEKN-----YCNCKNEYKVVHDECMKKWIQYSRERSCKLCNK-EYNIISV 57
Query: 185 TE-----------------------IETAELSNEVNNANATSSISAAIGHGETRSIWHGH 221
+ + T +S + N T I + + +
Sbjct: 58 RKPFSQWVFSIKDCKKSAILYATLFLCTFIISLVLTRINITKIIDTSKNDVSFKLVTMIF 117
Query: 222 RFLNFLLACMVFAFVISWLFHF 243
L F++ C+ F +I +L+ +
Sbjct: 118 YLLPFVITCISFITLIVYLYKY 139
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
D CRICH +G + C C L A HK C E W CE+C++
Sbjct: 60 DGPFCRICH------EGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHT 111
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 117 ERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
+ D +C IC+ L + + C C +L H+ C W I N C+IC
Sbjct: 3 DEDVPVCWICNEELGNERFRA-------CGCTGELENVHRSCLSTWLTISRNTACQICGV 55
Query: 177 I 177
+
Sbjct: 56 V 56
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 34.3 bits (77), Expect = 0.94, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 125 ICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174
IC +C + E P+ C C + H++C W K + CE+C
Sbjct: 8 ICRVCRSEGTPEK--PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 34.3 bits (77), Expect = 0.94, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 125 ICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174
IC +C + E P+ C C + H++C W K + CE+C
Sbjct: 8 ICRVCRSEGTPEK--PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 34.3 bits (77), Expect = 0.94, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 125 ICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174
IC +C + E P+ C C + H++C W K + CE+C
Sbjct: 8 ICRVCRSEGTPEK--PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q65XX2|LTN1_CAEEL E3 ubiquitin-protein ligase listerin OS=Caenorhabditis elegans
GN=Y54E10A.11 PE=3 SV=1
Length = 1446
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 109 NNNNRVEGERDCRICRICHLCLESNSHESGVPIQLGC-SCKDDLAAAHKQCAEAWFKIRG 167
N + VEG DC IC + + +H+ +P ++ C CK+ H C WF+
Sbjct: 1384 NVDKGVEGVEDCTICM---MTVHQQTHQ--LP-KIKCKQCKNKF---HSNCLYKWFESSN 1434
Query: 168 NKTCEICNS 176
TC +C +
Sbjct: 1435 QSTCPLCRN 1443
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3 PE=1
SV=1
Length = 201
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 135 HESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
H+ P++ C CK A +H+ C W + +TC +C +
Sbjct: 12 HQPEGPLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGT 53
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNK--------TCEIC 174
CRIC + S+S+ P C C L H++C + W + + N TCE+C
Sbjct: 554 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELC 609
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNK--------TCEIC 174
CRIC + S+S+ P C C L H+ C + W + + N TCE+C
Sbjct: 552 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNK--------TCEIC 174
CRIC + S+S+ P C C L H+ C + W + + N TCE+C
Sbjct: 552 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 116 GERDCRICRICHLCLESNSH---ESGVPIQLGCSCKDDLAAAH-KQCAEAWFKIRGNKTC 171
G +CR C C+L + H ESG C CK + A A+ KQCAE ++ K C
Sbjct: 441 GYPNCRECE-CNLNGTNGYHCEAESGQQ----CPCKINFAGAYCKQCAEGYYGFPECKAC 495
Query: 172 EICNSIA 178
E CN I
Sbjct: 496 E-CNKIG 501
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176
D ICR+C +S P+ C C + H++C W CE+C +
Sbjct: 4 DDEICRVCRCEGAPDS-----PLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKA 56
>sp|Q997C2|LAP_MYXVL E3 ubiquitin-protein ligase LAP OS=Myxoma virus (strain Lausanne)
GN=LAP PE=3 SV=1
Length = 206
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 145 CSCKDDLAAAHKQCAEAWFK--IRGNKTCEICNS 176
C C+ D HK+C E W + NK+C IC S
Sbjct: 37 CKCRGDNKIVHKECLEEWINTDVVKNKSCAICES 70
>sp|A6H8T7|CBPC2_DANRE Cytosolic carboxypeptidase 2 OS=Danio rerio GN=zte25 PE=2 SV=1
Length = 721
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 173 ICNSIARNVAGATEIETAELSNEVNNANATSSISAAIGHGETRSIWHGHRFLNFLLACMV 232
+C S+A N I S A ++A + GET W FL FLL+ +
Sbjct: 363 LCRSLAGNAVYVLTITAPSSSLAERKAKRAVVVTARVHPGETNGSWMMQGFLEFLLSDLP 422
Query: 233 FAFVISWLFHFNM 245
A ++ F F +
Sbjct: 423 DAHLLRETFIFKV 435
>sp|E1B9D8|CBPC3_BOVIN Cytosolic carboxypeptidase 3 OS=Bos taurus GN=AGBL3 PE=3 SV=1
Length = 1003
Score = 32.0 bits (71), Expect = 4.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 168 NKTCEI---CNSIARNVAGATEIETAELSNEVNNANATSSISAAIGHGETRSIWHGHRFL 224
+K C+I C++IARN+ I T L N + ++A + GET S W FL
Sbjct: 320 SKFCKIRVLCHTIARNMVYILTI-TTPLKNSESRKRKAVILTARVHPGETNSSWIMKGFL 378
Query: 225 NFLLA 229
+++L
Sbjct: 379 DYILG 383
>sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1
PE=2 SV=1
Length = 1696
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)
Query: 109 NNNNRVEGERDCRIC-RICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG 167
N + R EG DC IC + H +P + +CK H +C WF
Sbjct: 1634 NVDKRFEGVEDCMICFSVIH------GSNYSLPKKACRTCKKKF---HSECLYKWFTSSN 1684
Query: 168 NKTCEIC 174
TC +C
Sbjct: 1685 KSTCPLC 1691
>sp|O94822|LTN1_HUMAN E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1
SV=6
Length = 1766
Score = 31.6 bits (70), Expect = 5.6, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 109 NNNNRVEGERDCRIC-RICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG 167
N + R EG DC IC + H +P + +CK H C WF
Sbjct: 1704 NVDKRFEGVEDCMICFSVIH------GFNYSLPKKACRTCKKKF---HSACLYKWFTSSN 1754
Query: 168 NKTCEIC 174
TC +C
Sbjct: 1755 KSTCPLC 1761
>sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1
SV=3
Length = 1767
Score = 31.2 bits (69), Expect = 6.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 109 NNNNRVEGERDCRIC-RICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG 167
N + R EG DC IC + H +P + +CK H C WF
Sbjct: 1705 NVDKRFEGVEDCMICFSVIH------GFNYSLPKKACRTCKKKF---HSACLYKWFTSSN 1755
Query: 168 NKTCEIC 174
TC +C
Sbjct: 1756 KSTCPLC 1762
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181
+CRIC E S C C + H+ C W RG+ +CE+C + +
Sbjct: 142 LCRICFQGPEQGELLSP------CRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVI 195
Query: 182 AGATE 186
A +T+
Sbjct: 196 AISTK 200
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174
IC+IC E + C C + H+ C W RG+ TCE+C
Sbjct: 169 ICKICFQGAEQGE------LLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 125 ICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174
IC +C + E G + C C + H+ C W RG+ TCE+C
Sbjct: 165 ICKICFQGA--EQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELC 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.127 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,345,755
Number of Sequences: 539616
Number of extensions: 3323907
Number of successful extensions: 12400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 11930
Number of HSP's gapped (non-prelim): 330
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)