Query 025800
Match_columns 248
No_of_seqs 204 out of 537
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 09:40:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00744 RINGv The RING-vari 99.7 2.7E-17 5.8E-22 115.3 3.5 49 122-175 1-49 (49)
2 PHA02825 LAP/PHD finger-like p 99.7 7.9E-17 1.7E-21 137.9 5.7 97 116-245 7-103 (162)
3 PF12906 RINGv: RING-variant d 99.6 5.8E-17 1.3E-21 112.7 1.2 47 123-174 1-47 (47)
4 PHA02862 5L protein; Provision 99.6 4.4E-16 9.6E-21 131.9 3.6 64 121-195 3-66 (156)
5 KOG3053 Uncharacterized conser 99.6 1.2E-15 2.5E-20 139.3 4.9 95 113-236 16-118 (293)
6 KOG1609 Protein involved in mR 99.5 3.6E-14 7.8E-19 126.3 3.7 59 122-183 80-138 (323)
7 COG5183 SSM4 Protein involved 99.4 1.6E-13 3.4E-18 139.9 5.6 67 103-181 2-68 (1175)
8 PF13639 zf-RING_2: Ring finge 97.6 3E-05 6.5E-10 52.0 1.4 42 123-175 3-44 (44)
9 PF13920 zf-C3HC4_3: Zinc fing 96.8 0.00095 2.1E-08 45.9 2.7 45 123-181 5-50 (50)
10 KOG4628 Predicted E3 ubiquitin 96.6 0.0023 4.9E-08 61.4 4.2 51 122-183 231-282 (348)
11 COG5243 HRD1 HRD ubiquitin lig 96.5 0.0027 5.8E-08 61.9 4.2 49 122-177 289-343 (491)
12 cd00162 RING RING-finger (Real 96.5 0.003 6.5E-08 40.1 3.1 43 123-177 2-44 (45)
13 PF12678 zf-rbx1: RING-H2 zinc 96.4 0.0032 7E-08 47.1 3.0 46 123-175 22-73 (73)
14 PHA02929 N1R/p28-like protein; 96.4 0.0043 9.3E-08 56.6 4.4 53 123-182 177-230 (238)
15 smart00184 RING Ring finger. E 96.3 0.0044 9.6E-08 37.9 2.9 39 123-174 1-39 (39)
16 PLN03208 E3 ubiquitin-protein 96.1 0.0067 1.4E-07 54.0 4.2 45 123-179 21-79 (193)
17 PF11793 FANCL_C: FANCL C-term 95.9 0.0032 6.9E-08 47.0 1.0 50 123-179 5-66 (70)
18 PF00097 zf-C3HC4: Zinc finger 95.7 0.0094 2E-07 38.9 2.6 40 123-174 1-41 (41)
19 PF12861 zf-Apc11: Anaphase-pr 95.5 0.023 4.9E-07 44.8 4.4 53 123-179 24-82 (85)
20 KOG0802 E3 ubiquitin ligase [P 95.3 0.0095 2.1E-07 59.2 2.2 47 122-177 293-339 (543)
21 PHA02926 zinc finger-like prot 94.7 0.036 7.9E-07 50.8 4.1 56 123-183 173-234 (242)
22 smart00504 Ubox Modified RING 94.6 0.044 9.6E-07 38.3 3.4 44 122-179 3-46 (63)
23 PF13923 zf-C3HC4_2: Zinc fing 94.4 0.029 6.4E-07 36.7 1.9 38 123-174 1-39 (39)
24 KOG1493 Anaphase-promoting com 94.3 0.023 4.9E-07 44.5 1.6 54 123-180 23-82 (84)
25 KOG0823 Predicted E3 ubiquitin 94.2 0.068 1.5E-06 48.9 4.5 51 114-179 44-95 (230)
26 COG5540 RING-finger-containing 92.8 0.093 2E-06 50.3 3.1 46 123-178 326-371 (374)
27 COG5219 Uncharacterized conser 92.2 0.043 9.3E-07 59.0 0.1 51 123-179 1472-1523(1525)
28 TIGR00599 rad18 DNA repair pro 91.0 0.26 5.6E-06 48.2 4.0 45 122-180 28-72 (397)
29 KOG0828 Predicted E3 ubiquitin 89.8 0.25 5.3E-06 50.1 2.8 50 123-178 574-633 (636)
30 KOG0827 Predicted E3 ubiquitin 89.6 0.26 5.7E-06 48.6 2.7 24 152-175 28-52 (465)
31 PF14634 zf-RING_5: zinc-RING 89.1 0.4 8.6E-06 32.2 2.6 43 123-176 2-44 (44)
32 KOG0804 Cytoplasmic Zn-finger 87.7 0.19 4.2E-06 50.1 0.5 37 120-164 175-211 (493)
33 KOG0317 Predicted E3 ubiquitin 87.0 0.76 1.7E-05 43.5 3.9 46 121-180 240-285 (293)
34 PF15227 zf-C3HC4_4: zinc fing 81.9 0.89 1.9E-05 30.7 1.5 40 123-174 1-42 (42)
35 PF05883 Baculo_RING: Baculovi 80.3 0.92 2E-05 38.6 1.4 39 123-165 29-68 (134)
36 PF04564 U-box: U-box domain; 79.1 2.4 5.3E-05 31.4 3.2 46 122-180 6-51 (73)
37 PF14570 zf-RING_4: RING/Ubox 77.7 1.6 3.4E-05 31.1 1.7 46 123-179 1-48 (48)
38 KOG1734 Predicted RING-contain 76.1 0.83 1.8E-05 43.3 -0.1 53 122-179 226-281 (328)
39 COG5236 Uncharacterized conser 73.7 3.8 8.2E-05 40.4 3.7 63 104-181 47-110 (493)
40 PF08746 zf-RING-like: RING-li 72.0 2.1 4.6E-05 29.3 1.1 21 154-174 23-43 (43)
41 PF13445 zf-RING_UBOX: RING-ty 69.8 3.8 8.2E-05 28.1 2.0 40 123-171 1-42 (43)
42 KOG1645 RING-finger-containing 69.1 4.3 9.3E-05 40.5 3.0 55 119-180 3-57 (463)
43 KOG2930 SCF ubiquitin ligase, 67.3 3.4 7.5E-05 34.2 1.7 26 152-179 83-108 (114)
44 KOG2164 Predicted E3 ubiquitin 65.6 18 0.00039 36.9 6.6 102 121-242 187-298 (513)
45 KOG0801 Predicted E3 ubiquitin 65.3 3.6 7.8E-05 36.7 1.5 22 123-148 180-201 (205)
46 COG5194 APC11 Component of SCF 64.4 5.1 0.00011 31.8 2.0 28 152-181 56-83 (88)
47 KOG4265 Predicted E3 ubiquitin 64.2 8 0.00017 37.6 3.7 46 123-181 293-338 (349)
48 PLN02189 cellulose synthase 63.6 5.1 0.00011 43.8 2.5 51 122-179 36-87 (1040)
49 PF09889 DUF2116: Uncharacteri 60.7 19 0.00041 26.6 4.3 12 168-179 3-14 (59)
50 KOG1785 Tyrosine kinase negati 60.6 3.7 8.1E-05 41.1 0.8 48 122-181 371-418 (563)
51 PF07800 DUF1644: Protein of u 55.2 21 0.00045 31.4 4.4 35 123-166 5-49 (162)
52 KOG2177 Predicted E3 ubiquitin 54.8 5.9 0.00013 32.9 1.0 50 115-181 11-60 (386)
53 PLN02436 cellulose synthase A 53.5 9.5 0.00021 42.0 2.5 53 122-181 38-91 (1094)
54 PF10367 Vps39_2: Vacuolar sor 52.5 5.9 0.00013 30.0 0.6 34 115-161 76-109 (109)
55 PF01440 Gemini_AL2: Geminivir 50.5 2.6 5.7E-05 35.8 -1.8 33 140-175 32-64 (134)
56 PLN02195 cellulose synthase A 49.8 17 0.00037 39.7 3.7 54 120-179 6-59 (977)
57 PF10272 Tmpp129: Putative tra 48.5 21 0.00046 34.7 3.8 37 142-181 306-353 (358)
58 TIGR00570 cdk7 CDK-activating 48.5 20 0.00044 34.3 3.5 51 122-180 5-55 (309)
59 COG5432 RAD18 RING-finger-cont 45.9 11 0.00024 36.4 1.4 46 122-181 27-72 (391)
60 PF06305 DUF1049: Protein of u 44.9 23 0.0005 25.2 2.7 23 221-243 18-40 (68)
61 KOG1039 Predicted E3 ubiquitin 43.9 17 0.00037 35.2 2.3 54 123-181 164-223 (344)
62 PLN02638 cellulose synthase A 43.7 19 0.00041 39.7 2.9 52 122-180 19-71 (1079)
63 KOG0825 PHD Zn-finger protein 41.7 5.5 0.00012 42.8 -1.4 30 152-183 146-175 (1134)
64 PF13894 zf-C2H2_4: C2H2-type 41.5 11 0.00024 20.7 0.4 14 170-183 2-15 (24)
65 KOG4445 Uncharacterized conser 39.3 22 0.00048 34.5 2.3 48 123-179 118-186 (368)
66 KOG0320 Predicted E3 ubiquitin 38.8 30 0.00065 31.1 2.9 45 122-178 133-177 (187)
67 PF14569 zf-UDP: Zinc-binding 38.4 33 0.00072 27.0 2.8 57 121-183 10-66 (80)
68 PLN02400 cellulose synthase 34.0 25 0.00054 38.9 2.0 54 122-181 38-91 (1085)
69 KOG1428 Inhibitor of type V ad 32.2 46 0.001 39.0 3.6 49 122-179 3488-3544(3738)
70 KOG1002 Nucleotide excision re 31.4 25 0.00054 36.6 1.4 45 123-179 539-586 (791)
71 PF10571 UPF0547: Uncharacteri 31.4 21 0.00046 22.2 0.6 13 167-179 13-25 (26)
72 PF00096 zf-C2H2: Zinc finger, 31.0 19 0.00042 20.3 0.3 14 170-183 2-15 (23)
73 KOG1941 Acetylcholine receptor 30.8 24 0.00052 35.4 1.1 49 121-177 366-414 (518)
74 KOG4159 Predicted E3 ubiquitin 28.9 31 0.00066 34.1 1.5 87 82-182 44-132 (398)
75 PHA03164 hypothetical protein; 28.5 51 0.0011 26.1 2.4 24 222-245 57-83 (88)
76 KOG4692 Predicted E3 ubiquitin 26.5 42 0.0009 33.5 1.9 45 122-180 424-468 (489)
77 KOG0287 Postreplication repair 24.1 34 0.00073 33.9 0.8 44 122-179 25-68 (442)
78 PF09835 DUF2062: Uncharacteri 23.9 40 0.00087 27.8 1.1 24 223-246 34-57 (154)
79 PLN02915 cellulose synthase A 23.4 57 0.0012 36.1 2.4 52 122-179 17-68 (1044)
80 KOG3970 Predicted E3 ubiquitin 23.3 1.3E+02 0.0028 28.4 4.4 48 121-178 51-104 (299)
81 KOG1940 Zn-finger protein [Gen 23.3 43 0.00093 31.7 1.3 44 123-176 161-204 (276)
82 PF11395 DUF2873: Protein of u 21.4 1.2E+02 0.0025 21.1 2.8 17 224-240 14-30 (43)
83 KOG1952 Transcription factor N 21.3 87 0.0019 34.2 3.2 54 122-183 193-251 (950)
84 PF12874 zf-met: Zinc-finger o 21.3 38 0.00081 19.5 0.3 14 170-183 2-15 (25)
85 COG5175 MOT2 Transcriptional r 21.2 79 0.0017 31.4 2.6 46 123-179 17-64 (480)
86 KOG3899 Uncharacterized conser 21.0 1E+02 0.0022 30.0 3.3 36 143-181 321-367 (381)
87 PF13465 zf-H2C2_2: Zinc-finge 20.8 40 0.00086 20.3 0.4 12 169-180 15-26 (26)
88 PF13912 zf-C2H2_6: C2H2-type 20.8 36 0.00078 19.9 0.2 15 170-184 3-17 (27)
89 KOG3039 Uncharacterized conser 20.5 80 0.0017 30.0 2.5 49 121-179 222-270 (303)
90 PF05290 Baculo_IE-1: Baculovi 20.0 78 0.0017 27.3 2.1 54 121-181 81-134 (140)
No 1
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.67 E-value=2.7e-17 Score=115.32 Aligned_cols=49 Identities=49% Similarity=1.042 Sum_probs=44.0
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk 175 (248)
+||||++..+ .++++++||.|+|+++|||+.||++|+..+++.+||||+
T Consensus 1 ~CrIC~~~~~-----~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-----EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-----CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4999998322 457899999999999999999999999999999999996
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.66 E-value=7.9e-17 Score=137.87 Aligned_cols=97 Identities=23% Similarity=0.426 Sum_probs=68.8
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccccchHHHHHhHHH
Q 025800 116 GERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAGATEIETAELSNE 195 (248)
Q Consensus 116 eE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~~~~~~~~E~wne 195 (248)
.++. ||||+++.. .+..||+|+|+++|||++||++|+..+++..||+|+++|....... .+.+|.-
T Consensus 7 ~~~~---CRIC~~~~~--------~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~k---pl~~W~~ 72 (162)
T PHA02825 7 MDKC---CWICKDEYD--------VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYK---KCTKWRC 72 (162)
T ss_pred CCCe---eEecCCCCC--------CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecC---CCccccc
Confidence 3555 999987642 3568999999999999999999999999999999999998765432 2356743
Q ss_pred hhhcccccccccccCCCcccceeecchHHHHHHHHHHHHHHHHHhhcccC
Q 025800 196 VNNANATSSISAAIGHGETRSIWHGHRFLNFLLACMVFAFVISWLFHFNM 245 (248)
Q Consensus 196 ~~~~~~~~~~~~~~~~~e~r~fW~~~~flnfLlacmVfaFVi~WlFh~~~ 245 (248)
... . ...+.+.+++.|++.+-+---|..||+
T Consensus 73 ~~~------------d-------c~~~~l~~~llcl~~~~i~~~l~~~~i 103 (162)
T PHA02825 73 SFR------------D-------CHDSAIVNSLLCLIVGGITYLLVSFNI 103 (162)
T ss_pred cCc------------c-------hhhHHHHHHHHHHHHhhhhheeeehhh
Confidence 311 0 023556677777776655334445543
No 3
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.63 E-value=5.8e-17 Score=112.74 Aligned_cols=47 Identities=40% Similarity=0.985 Sum_probs=38.0
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEIC 174 (248)
||||+++.+.+ ++|+.||.|+|+++|||+.||++|+..+++.+||||
T Consensus 1 CrIC~~~~~~~-----~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEED-----EPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSS-----S-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCC-----CceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 89999987752 389999999999999999999999999999999998
No 4
>PHA02862 5L protein; Provisional
Probab=99.60 E-value=4.4e-16 Score=131.90 Aligned_cols=64 Identities=20% Similarity=0.486 Sum_probs=53.1
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccccchHHHHHhHHH
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAGATEIETAELSNE 195 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~~~~~~~~E~wne 195 (248)
.+||||+++.+. -..||+|+|+++|||++||++|++.++++.||+|+++|..-+... ...+|..
T Consensus 3 diCWIC~~~~~e--------~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yK---pf~kW~~ 66 (156)
T PHA02862 3 DICWICNDVCDE--------RNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYV---SFKKWNW 66 (156)
T ss_pred CEEEEecCcCCC--------CcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccc---cHHHhhc
Confidence 469999987542 259999999999999999999999999999999999998655543 3467753
No 5
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.2e-15 Score=139.29 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCcCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCC------ccccccccceeec-cccc
Q 025800 113 RVEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGN------KTCEICNSIARNV-AGAT 185 (248)
Q Consensus 113 ~~eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn------~~CEICk~~~~nv-~~~~ 185 (248)
+.|.||. ||||+.+++.. ....++.||+|+|+.||||+.||.+|+++|.. ..|.+|.++|..+ |.++
T Consensus 16 ~~e~eR~---CWiCF~TdeDn---~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~ 89 (293)
T KOG3053|consen 16 NQELERC---CWICFATDEDN---RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLG 89 (293)
T ss_pred cccccee---EEEEeccCccc---chhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccC
Confidence 4456777 99999988753 33469999999999999999999999987642 6999999999988 7765
Q ss_pred hH-HHHHhHHHhhhcccccccccccCCCcccceeecchHHHHHHHHHHHHHH
Q 025800 186 EI-ETAELSNEVNNANATSSISAAIGHGETRSIWHGHRFLNFLLACMVFAFV 236 (248)
Q Consensus 186 ~~-~~~E~wne~~~~~~~~~~~~~~~~~e~r~fW~~~~flnfLlacmVfaFV 236 (248)
.+ ..+|..+.. -.++++||++.++.+++
T Consensus 90 ~~~~~Le~~d~~-----------------------i~r~cp~l~~g~~v~~i 118 (293)
T KOG3053|consen 90 PFDRVLERLDIL-----------------------IFRLCPFLAAGIFVGSI 118 (293)
T ss_pred hHHHHHHHhhhH-----------------------HhhcChHHHHHHHhhee
Confidence 54 344544433 34588999988876653
No 6
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.45 E-value=3.6e-14 Score=126.29 Aligned_cols=59 Identities=51% Similarity=0.970 Sum_probs=51.7
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAG 183 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~ 183 (248)
.||||+...+.. .+.+++.||.|+|++++||+.|+++|+..|++..||||++.|.+...
T Consensus 80 ~cRIc~~~~~~~---~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~ 138 (323)
T KOG1609|consen 80 ICRICHEEDEES---NGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGT 138 (323)
T ss_pred cEEEEecccccc---cccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecce
Confidence 499999877642 11279999999999999999999999999999999999999998844
No 7
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.41 E-value=1.6e-13 Score=139.94 Aligned_cols=67 Identities=27% Similarity=0.627 Sum_probs=56.8
Q ss_pred ccccccCCCCCCcCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 103 ATTTTTNNNNRVEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 103 ~~~~~~~~~~~~eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
+|++++-|+|. + .||||+.+.. .++||-.||+|.|+++|+|++||..|+..++++.|||||++|+-.
T Consensus 2 e~~~~~mN~d~----~---~CRICr~e~~-----~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 2 EKENTPMNEDK----R---SCRICRTEDI-----RDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CCCCCCCCccc----h---hceeecCCCC-----CCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 45666666532 3 4999998765 368999999999999999999999999999999999999999744
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.58 E-value=3e-05 Score=52.00 Aligned_cols=42 Identities=29% Similarity=0.816 Sum_probs=32.9
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk 175 (248)
|-||++.... ....+.+||. +.+|.+|+.+|++.+ .+|++|+
T Consensus 3 C~IC~~~~~~----~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 3 CPICLEEFED----GEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp ETTTTCBHHT----TSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CcCCChhhcC----CCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 9999988754 2356788863 889999999999774 5999995
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.84 E-value=0.00095 Score=45.92 Aligned_cols=45 Identities=31% Similarity=0.598 Sum_probs=36.0
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||++... +.+..||. +. +-..|+.+|++ ....|++|+..+..|
T Consensus 5 C~iC~~~~~-------~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 5 CPICFENPR-------DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIESV 50 (50)
T ss_dssp -TTTSSSBS-------SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-SEE
T ss_pred CccCCccCC-------ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhcCC
Confidence 999988643 47899997 55 88999999997 889999999988654
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0023 Score=61.38 Aligned_cols=51 Identities=29% Similarity=0.615 Sum_probs=39.8
Q ss_pred ceeEeccCCCCCCCCCCC-ceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccc
Q 025800 122 ICRICHLCLESNSHESGV-PIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAG 183 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~-~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~ 183 (248)
.|=||++.-.. |+ .-++||+ +..|..|+..|+... .+.|++||.....-.+
T Consensus 231 ~CaIClEdY~~-----GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 231 TCAICLEDYEK-----GDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTDSG 282 (348)
T ss_pred eEEEeeccccc-----CCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCCCC
Confidence 49999987654 34 3479998 779999999999765 5679999997764433
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0027 Score=61.94 Aligned_cols=49 Identities=31% Similarity=0.693 Sum_probs=37.6
Q ss_pred ceeEeccCCCCCCCC------CCCceeccccccCccccccHHHHHHHHHHcCCccccccccc
Q 025800 122 ICRICHLCLESNSHE------SGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSI 177 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e------~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~ 177 (248)
+|-||+++.-..++| ...|-.+||. +..|-.||+.|. ....+|+||+..
T Consensus 289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~--ERqQTCPICr~p 343 (491)
T COG5243 289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWL--ERQQTCPICRRP 343 (491)
T ss_pred eEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHH--HhccCCCcccCc
Confidence 499999885433222 2245689997 789999999999 456799999987
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.49 E-value=0.003 Score=40.07 Aligned_cols=43 Identities=28% Similarity=0.757 Sum_probs=32.2
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSI 177 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~ 177 (248)
|-||+..... ...+.||. +.+|..|+..|++. ++..|++|+..
T Consensus 2 C~iC~~~~~~------~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEFRE------PVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhhhC------ceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 8899876521 23455575 55899999999976 67789999875
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.36 E-value=0.0032 Score=47.11 Aligned_cols=46 Identities=35% Similarity=0.764 Sum_probs=30.3
Q ss_pred eeEeccCCCCCCCC-----CCCc-eeccccccCccccccHHHHHHHHHHcCCccccccc
Q 025800 123 CRICHLCLESNSHE-----SGVP-IQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175 (248)
Q Consensus 123 CRIC~~~~e~~~~e-----~g~~-li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk 175 (248)
|-||+........+ ..-+ ...+|. +..|..||.+|++. +.+|++|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTT--SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhc--CCcCCCCC
Confidence 99999887432111 1122 345664 88999999999944 55999995
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.36 E-value=0.0043 Score=56.62 Aligned_cols=53 Identities=23% Similarity=0.482 Sum_probs=37.5
Q ss_pred eeEeccCCCCCCCCC-CCceeccccccCccccccHHHHHHHHHHcCCccccccccceeecc
Q 025800 123 CRICHLCLESNSHES-GVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVA 182 (248)
Q Consensus 123 CRIC~~~~e~~~~e~-g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~ 182 (248)
|-||++......... .-.+..+|. +..|..|+.+|++ ...+|++|+..+..|.
T Consensus 177 C~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~--~~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 177 CAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKK--EKNTCPVCRTPFISVI 230 (238)
T ss_pred CccCCcccccCccccccceecCCCC-----CcccHHHHHHHHh--cCCCCCCCCCEeeEEe
Confidence 999998754320000 013456675 7899999999995 4669999999998663
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.29 E-value=0.0044 Score=37.87 Aligned_cols=39 Identities=41% Similarity=0.949 Sum_probs=29.8
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEIC 174 (248)
|.||+... .+..++||. ...|..|+..|++ .+...|++|
T Consensus 1 C~iC~~~~-------~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-------KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-------CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67887763 247788876 5589999999998 566778877
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.12 E-value=0.0067 Score=54.04 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=35.9
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc--------------CCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR--------------GNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k--------------gn~~CEICk~~~~ 179 (248)
|-||++... ++++.+|. +.....|+.+|+... +...|++|+..+.
T Consensus 21 CpICld~~~-------dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 21 CNICLDQVR-------DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCCcCC-------CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 999987643 47888875 778999999998642 3468999999885
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.91 E-value=0.0032 Score=47.01 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=23.8
Q ss_pred eeEeccCCCCCCCCCCCceecc---ccccCccccccHHHHHHHHHHc-CC--------cccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLG---CSCKDDLAAAHKQCAEAWFKIR-GN--------KTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~P---C~CkGsl~~VH~~CL~~W~k~k-gn--------~~CEICk~~~~ 179 (248)
|.||+..... .+.....- ..|+ +..|..||.+||... ++ -.|+.|+.++.
T Consensus 5 C~IC~~~~~~----~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 5 CGICYSYRLD----DGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -SSS--SS-T----T-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCcCCcEecC----CCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 9999977542 11222333 4665 779999999999742 22 26999999875
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.73 E-value=0.0094 Score=38.89 Aligned_cols=40 Identities=30% Similarity=0.866 Sum_probs=33.1
Q ss_pred eeEeccCCCCCCCCCCCce-eccccccCccccccHHHHHHHHHHcCCcccccc
Q 025800 123 CRICHLCLESNSHESGVPI-QLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~l-i~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEIC 174 (248)
|.||++.... +. ++||. +.+...|+.+|++..+...|++|
T Consensus 1 C~iC~~~~~~-------~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-------PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-------EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-------CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 6788876543 44 89987 77999999999998888899987
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.49 E-value=0.023 Score=44.79 Aligned_cols=53 Identities=21% Similarity=0.582 Sum_probs=36.5
Q ss_pred eeEeccCCCCCC--C-CCCC--ceeccccccCccccccHHHHHHHHHHc-CCcccccccccee
Q 025800 123 CRICHLCLESNS--H-ESGV--PIQLGCSCKDDLAAAHKQCAEAWFKIR-GNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~--~-e~g~--~li~PC~CkGsl~~VH~~CL~~W~k~k-gn~~CEICk~~~~ 179 (248)
|-||+...+..- . .+|+ +|+ =+.|. +.+|..|+.+|+... .+..|++|.++++
T Consensus 24 CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 24 CGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 888887765310 0 0121 333 23565 779999999999863 5689999999986
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.0095 Score=59.24 Aligned_cols=47 Identities=32% Similarity=0.782 Sum_probs=38.3
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSI 177 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~ 177 (248)
.|.||++.+..+. .-.+.++||. +..|..||..|++. ..+|++|+..
T Consensus 293 ~C~IC~e~l~~~~--~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~ 339 (543)
T KOG0802|consen 293 LCIICLEELHSGH--NITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTV 339 (543)
T ss_pred eeeeechhhcccc--ccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhh
Confidence 4999999887531 1237899997 88999999999966 7899999993
No 21
>PHA02926 zinc finger-like protein; Provisional
Probab=94.74 E-value=0.036 Score=50.82 Aligned_cols=56 Identities=23% Similarity=0.529 Sum_probs=39.7
Q ss_pred eeEeccCCCCCC--CCCCCceeccccccCccccccHHHHHHHHHHcC----Cccccccccceeeccc
Q 025800 123 CRICHLCLESNS--HESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG----NKTCEICNSIARNVAG 183 (248)
Q Consensus 123 CRIC~~~~e~~~--~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kg----n~~CEICk~~~~nv~~ 183 (248)
|-||++..-... .+-.-.+..+|. +.....|+.+|.+.+. .+.|++|+..|..+.+
T Consensus 173 CgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 173 CGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 999997643210 011124677876 7788999999998652 4689999999997743
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.56 E-value=0.044 Score=38.31 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=35.9
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
+|.||..... ++++.||. +.+-+.|+.+|++. +.+|++|+..+.
T Consensus 3 ~Cpi~~~~~~-------~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMK-------DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCC-------CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 4999987654 37888874 66899999999976 678999999874
No 23
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.35 E-value=0.029 Score=36.70 Aligned_cols=38 Identities=32% Similarity=0.759 Sum_probs=28.7
Q ss_pred eeEeccCCCCCCCCCCCc-eeccccccCccccccHHHHHHHHHHcCCcccccc
Q 025800 123 CRICHLCLESNSHESGVP-IQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEIC 174 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~-li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEIC 174 (248)
|.||++... ++ ++.+|. +...+.|+++|++. +..|++|
T Consensus 1 C~iC~~~~~-------~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-------DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-------SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc-------CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 678876543 36 578887 78999999999976 5799887
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.023 Score=44.51 Aligned_cols=54 Identities=22% Similarity=0.609 Sum_probs=40.7
Q ss_pred eeEeccCCCCC--C---CCCCCceeccccccCccccccHHHHHHHHHHcCC-ccccccccceee
Q 025800 123 CRICHLCLESN--S---HESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGN-KTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~--~---~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn-~~CEICk~~~~n 180 (248)
|-||++..+.. + .+..=||+.+ .|+ +.+|..|+.+|+.++.+ -.|+.|.++|+.
T Consensus 23 CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 23 CGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred cceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 88888765531 0 0122378887 775 88999999999998876 699999999974
No 25
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.068 Score=48.91 Aligned_cols=51 Identities=27% Similarity=0.542 Sum_probs=40.3
Q ss_pred CcCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCC-cccccccccee
Q 025800 114 VEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGN-KTCEICNSIAR 179 (248)
Q Consensus 114 ~eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn-~~CEICk~~~~ 179 (248)
+...-+ |-||++... ++++..|. ++.==.||-+|+.++.+ +.|++||.+..
T Consensus 44 ~~~~Fd---CNICLd~ak-------dPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFD---CNICLDLAK-------DPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCcee---eeeeccccC-------CCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 344555 999998654 58999997 56667999999998876 56799999875
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.093 Score=50.28 Aligned_cols=46 Identities=22% Similarity=0.540 Sum_probs=35.5
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccce
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIA 178 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~ 178 (248)
|-||+...-. .+.-.++||. +-.|..|+++|+.- -...|++|.++.
T Consensus 326 CaICms~fiK----~d~~~vlPC~-----H~FH~~Cv~kW~~~-y~~~CPvCrt~i 371 (374)
T COG5540 326 CAICMSNFIK----NDRLRVLPCD-----HRFHVGCVDKWLLG-YSNKCPVCRTAI 371 (374)
T ss_pred EEEEhhhhcc----cceEEEeccC-----ceechhHHHHHHhh-hcccCCccCCCC
Confidence 9999877643 2346789997 66999999999962 235799999864
No 27
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.16 E-value=0.043 Score=58.98 Aligned_cols=51 Identities=29% Similarity=0.774 Sum_probs=35.5
Q ss_pred eeEeccCCCCCCCCCCCceeccc-cccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGC-SCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC-~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||+.-...- +...| ...| -|| .-.|-.||-+||+.+++.+|++|..++.
T Consensus 1472 CaICYsvL~~v--dr~lP-skrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1472 CAICYSVLDMV--DRSLP-SKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhHHHHHHHHH--hccCC-ccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 99998654420 11111 1222 244 5589999999999999999999998875
No 28
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.95 E-value=0.26 Score=48.20 Aligned_cols=45 Identities=22% Similarity=0.599 Sum_probs=36.2
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|.||+.... ++++.||. +.....|+..|+.. ...|++|+..+..
T Consensus 28 ~C~IC~d~~~-------~PvitpCg-----H~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 28 RCHICKDFFD-------VPVLTSCS-----HTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred CCCcCchhhh-------CccCCCCC-----CchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 4999987654 36788986 67889999999965 3489999999864
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.84 E-value=0.25 Score=50.09 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=34.9
Q ss_pred eeEeccCCCCCC----------CCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccce
Q 025800 123 CRICHLCLESNS----------HESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIA 178 (248)
Q Consensus 123 CRIC~~~~e~~~----------~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~ 178 (248)
|-||+...+.-. ....+-+..||. +..|+.||++|.... ...|++|....
T Consensus 574 C~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pL 633 (636)
T KOG0828|consen 574 CVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPL 633 (636)
T ss_pred ceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCC
Confidence 999987654210 012234566987 889999999999732 26899998754
No 30
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.56 E-value=0.26 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.804 Sum_probs=20.8
Q ss_pred ccccHHHHHHHHHHcCC-ccccccc
Q 025800 152 AAAHKQCAEAWFKIRGN-KTCEICN 175 (248)
Q Consensus 152 ~~VH~~CL~~W~k~kgn-~~CEICk 175 (248)
+.+|..||.+||..--. +.|+||+
T Consensus 28 hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 28 HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred hHHHHHHHHHHHccCCccCCCCcee
Confidence 67999999999976544 8999999
No 31
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=89.14 E-value=0.4 Score=32.22 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=34.8
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~ 176 (248)
|-||+..... ...+++++|. +.+...|+.++. .....|++|++
T Consensus 2 C~~C~~~~~~----~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSE----ERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccC----CCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 7889887722 2358899996 889999999999 77889999974
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.66 E-value=0.19 Score=50.06 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=27.1
Q ss_pred CCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHH
Q 025800 120 CRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFK 164 (248)
Q Consensus 120 ~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k 164 (248)
-|.|-+|++.++++ -+..+..+|. +-.|-.||++|-.
T Consensus 175 LPTCpVCLERMD~s---~~gi~t~~c~-----Hsfh~~cl~~w~~ 211 (493)
T KOG0804|consen 175 LPTCPVCLERMDSS---TTGILTILCN-----HSFHCSCLMKWWD 211 (493)
T ss_pred CCCcchhHhhcCcc---ccceeeeecc-----cccchHHHhhccc
Confidence 46799999988763 2334556665 6689999999964
No 33
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=0.76 Score=43.50 Aligned_cols=46 Identities=20% Similarity=0.496 Sum_probs=36.8
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
+.|-||++... ++--.||. +..=-.|+..|...|.. |++|...++-
T Consensus 240 ~kC~LCLe~~~-------~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~p 285 (293)
T KOG0317|consen 240 RKCSLCLENRS-------NPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQP 285 (293)
T ss_pred CceEEEecCCC-------CCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCC
Confidence 55999998764 46678987 56677999999977655 9999998863
No 34
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=81.86 E-value=0.89 Score=30.70 Aligned_cols=40 Identities=28% Similarity=0.654 Sum_probs=26.9
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCC--cccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGN--KTCEIC 174 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn--~~CEIC 174 (248)
|-||+.-.. +|+.++|. +-+=+.||.+|.+.... ..|++|
T Consensus 1 CpiC~~~~~-------~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-------DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-------SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-------CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 667876554 48999996 55778999999976655 488887
No 35
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=80.27 E-value=0.92 Score=38.56 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=27.1
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCcc-ccccHHHHHHHHHH
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDL-AAAHKQCAEAWFKI 165 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl-~~VH~~CL~~W~k~ 165 (248)
|+||+..... .+.-+..+|.-.-.| +..|..|+++|-+.
T Consensus 29 C~IC~~~I~~----~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 29 CQICFDRIDN----NDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred ehhhhhhhhc----CCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 9999988764 133566676554433 44899999999543
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=79.13 E-value=2.4 Score=31.35 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=32.2
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|-|++.-.. +++++|+. +..=+.|+++|++. +..+|++|+.....
T Consensus 6 ~CpIt~~lM~-------dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPITGELMR-------DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTTSSB-S-------SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred CCcCcCcHhh-------CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 4788876554 48899865 56889999999965 68899999887764
No 37
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=77.71 E-value=1.6 Score=31.13 Aligned_cols=46 Identities=20% Similarity=0.464 Sum_probs=22.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcC--Ccccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG--NKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kg--n~~CEICk~~~~ 179 (248)
|.+|.+..+. .+.-..||.|. ++-|+.=|.+++. +-.|+=|+..|.
T Consensus 1 cp~C~e~~d~-----~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDE-----TDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--C-----CCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccccc-----CCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 4567665532 23457999995 6789999998874 689999999884
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.06 E-value=0.83 Score=43.34 Aligned_cols=53 Identities=23% Similarity=0.659 Sum_probs=40.1
Q ss_pred ceeEeccCCCCCCCCCC---CceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESG---VPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g---~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
+|-||-.....+..|+| +.-.+-|+ +-.|..|++-|...-+..+|+-||.+..
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 49999766544322222 45567776 6799999999999989999999998875
No 39
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.74 E-value=3.8 Score=40.39 Aligned_cols=63 Identities=21% Similarity=0.405 Sum_probs=42.7
Q ss_pred cccccC-CCCCCcCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 104 TTTTTN-NNNRVEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 104 ~~~~~~-~~~~~eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
..++++ +++-.|++.. |-||-.+..- .-++||.=+ +-.-|+-+-...-..+.|.+|+++...|
T Consensus 47 PnlttsSaddtDEen~~---C~ICA~~~TY-------s~~~PC~H~-----~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 47 PNLTTSSADDTDEENMN---CQICAGSTTY-------SARYPCGHQ-----ICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred Cccccccccccccccce---eEEecCCceE-------EEeccCCch-----HHHHHHHHHHHHHhccCCCccccccceE
Confidence 334443 5666666666 9999776542 457999722 3335676666666788999999988766
No 40
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=71.96 E-value=2.1 Score=29.26 Aligned_cols=21 Identities=33% Similarity=0.887 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHcCCcccccc
Q 025800 154 AHKQCAEAWFKIRGNKTCEIC 174 (248)
Q Consensus 154 VH~~CL~~W~k~kgn~~CEIC 174 (248)
+|..|++++|+.+.+..|+.|
T Consensus 23 ~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 23 LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp E-HHHHHHHTTT-SS-B-TTT
T ss_pred HHHHHHHHHHhcCCCCCCcCC
Confidence 899999999998888899877
No 41
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=69.78 E-value=3.8 Score=28.14 Aligned_cols=40 Identities=28% Similarity=0.590 Sum_probs=20.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc--CCccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR--GNKTC 171 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k--gn~~C 171 (248)
|-||++ ... +...++++||. +-+=++||+++.+.+ +...|
T Consensus 1 CpIc~e-~~~---~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kC 42 (43)
T PF13445_consen 1 CPICKE-FST---EENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKC 42 (43)
T ss_dssp -TTT-----T---TSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--
T ss_pred CCcccc-ccC---CCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeC
Confidence 556666 322 13358999976 568899999999865 34445
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.06 E-value=4.3 Score=40.50 Aligned_cols=55 Identities=22% Similarity=0.440 Sum_probs=38.0
Q ss_pred CCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 119 DCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 119 ~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
++.+|-||+.+-+.. ....++.| +|. ...-.+|+++|+-.+-...|++|+.++..
T Consensus 3 ~g~tcpiclds~~~~---g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTA---GNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeec---CceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 345699999887652 22234333 222 56889999999964556899999988753
No 43
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.31 E-value=3.4 Score=34.17 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=22.2
Q ss_pred ccccHHHHHHHHHHcCCcccccccccee
Q 025800 152 AAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 152 ~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
+..|..|+.+|++. +..|++|..+..
T Consensus 83 HaFH~hCisrWlkt--r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKT--RNVCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhh--cCcCCCcCccee
Confidence 66899999999955 678999998875
No 44
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.57 E-value=18 Score=36.89 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=57.5
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH---cCCccccccccceee--c-cccchH-HHHHhH
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI---RGNKTCEICNSIARN--V-AGATEI-ETAELS 193 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~---kgn~~CEICk~~~~n--v-~~~~~~-~~~E~w 193 (248)
..|-||+..... +...-|. ++.=-.||.+.+.. ++-+.|+||...+.. | |.+.+. +-.+..
T Consensus 187 ~~CPICL~~~~~-------p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l 254 (513)
T KOG2164|consen 187 MQCPICLEPPSV-------PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEEL 254 (513)
T ss_pred CcCCcccCCCCc-------ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHH
Confidence 359999987543 3344454 44556899998864 456899999999986 5 444332 111221
Q ss_pred HHhhhcccccccccccCCCcccceeec--chHHHHHHHH-HHHHHHHHHhhc
Q 025800 194 NEVNNANATSSISAAIGHGETRSIWHG--HRFLNFLLAC-MVFAFVISWLFH 242 (248)
Q Consensus 194 ne~~~~~~~~~~~~~~~~~e~r~fW~~--~~flnfLlac-mVfaFVi~WlFh 242 (248)
...... ++ -+-..|+|-.+ .++..||+.. +...++|-=.|.
T Consensus 255 ~~~~~~-----ng---~~~~~r~F~~d~~r~~p~fl~dl~~~a~~~i~~~~~ 298 (513)
T KOG2164|consen 255 KLHQDP-----NG---IPDYNRRFSGDPARFVPDFLMDLPTYARINIRNMFN 298 (513)
T ss_pred HHHhcc-----cC---CCccccceecCcccccHHHHHhHHHHHHHHHHHhhc
Confidence 111110 11 12356777776 6777888754 333344433333
No 45
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.31 E-value=3.6 Score=36.68 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=17.2
Q ss_pred eeEeccCCCCCCCCCCCceecccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCK 148 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~Ck 148 (248)
|-||++.++.+ ..+-.+||.|-
T Consensus 180 CvICLEdL~~G----dtIARLPCLCI 201 (205)
T KOG0801|consen 180 CVICLEDLEAG----DTIARLPCLCI 201 (205)
T ss_pred EEEEhhhccCC----CceeccceEEE
Confidence 99999988752 34568999993
No 46
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=64.39 E-value=5.1 Score=31.83 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHHcCCccccccccceeec
Q 025800 152 AAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 152 ~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
+..|-.|+.+|++. ...|+++.++|+.-
T Consensus 56 HaFH~HCI~rWL~T--k~~CPld~q~w~~~ 83 (88)
T COG5194 56 HAFHDHCIYRWLDT--KGVCPLDRQTWVLA 83 (88)
T ss_pred hHHHHHHHHHHHhh--CCCCCCCCceeEEe
Confidence 67899999999988 45799999999754
No 47
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.15 E-value=8 Score=37.62 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=32.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|=||+.+. .+.+++||+= =..=..|++.-. =....|+||.+.+.-+
T Consensus 293 CVIClse~-------rdt~vLPCRH----LCLCs~Ca~~Lr--~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 293 CVICLSES-------RDTVVLPCRH----LCLCSGCAKSLR--YQTNNCPICRQPIEEL 338 (349)
T ss_pred eEEEecCC-------cceEEecchh----hehhHhHHHHHH--HhhcCCCccccchHhh
Confidence 99998754 3578999861 113456888776 3456899999988644
No 48
>PLN02189 cellulose synthase
Probab=63.61 E-value=5.1 Score=43.81 Aligned_cols=51 Identities=20% Similarity=0.587 Sum_probs=36.7
Q ss_pred ceeEeccCCCCCCCCCCCceecccc-ccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCS-CKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~-CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
+|+||-+..... +.|+ +.-.|+ |. --|=+.|. ..-...|+..|+.||+.|+
T Consensus 36 ~C~iCgd~vg~~--~~g~-~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLT--VDGD-LFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcC--CCCC-EEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 499998776542 2344 456777 62 22778999 4555669999999999998
No 49
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=60.71 E-value=19 Score=26.63 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=9.3
Q ss_pred Ccccccccccee
Q 025800 168 NKTCEICNSIAR 179 (248)
Q Consensus 168 n~~CEICk~~~~ 179 (248)
.+.|.+||....
T Consensus 3 HkHC~~CG~~Ip 14 (59)
T PF09889_consen 3 HKHCPVCGKPIP 14 (59)
T ss_pred CCcCCcCCCcCC
Confidence 468999997665
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=60.65 E-value=3.7 Score=41.06 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=38.3
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
.|.||-+.+. +.-|.||. ++.-..||-.|-...+..+|+.|..+.+--
T Consensus 371 LCKICaendK-------dvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDK-------DVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCC-------Cccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4999976543 46689996 667789999999888888999999888654
No 51
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=55.17 E-value=21 Score=31.44 Aligned_cols=35 Identities=29% Similarity=0.592 Sum_probs=25.8
Q ss_pred eeEeccCCCCCCCCCCCceecccc----------ccCccccccHHHHHHHHHHc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCS----------CKDDLAAAHKQCAEAWFKIR 166 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~----------CkGsl~~VH~~CL~~W~k~k 166 (248)
|-||++- +.|.+.+-|+ |. ..|-|..||++..+..
T Consensus 5 CpICme~-------PHNAVLLlCSS~~kgcRpymc~--Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 5 CPICMEH-------PHNAVLLLCSSHEKGCRPYMCD--TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CceeccC-------CCceEEEEeccccCCccccccC--CccchhHHHHHHHHHh
Confidence 9999875 3456666664 54 3678999999998753
No 52
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=5.9 Score=32.93 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=37.5
Q ss_pred cCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 115 EGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 115 eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
++|-. |-||++.... +.++||. +.+=+.|+..++. ....|+.|...+.++
T Consensus 11 ~~~~~---C~iC~~~~~~-------p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~~~~~~ 60 (386)
T KOG2177|consen 11 QEELT---CPICLEYFRE-------PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRPPSRNL 60 (386)
T ss_pred ccccc---ChhhHHHhhc-------Ccccccc-----chHhHHHHHHhcC--CCcCCcccCCchhcc
Confidence 34555 9999987653 4788886 5566799999998 778999999644444
No 53
>PLN02436 cellulose synthase A
Probab=53.53 E-value=9.5 Score=42.00 Aligned_cols=53 Identities=25% Similarity=0.682 Sum_probs=36.7
Q ss_pred ceeEeccCCCCCCCCCCCceecccc-ccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCS-CKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~-CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
+|+||-+..... +.|+++ -.|+ |. --|=+.|. ..-...++..|+.||+.|+-.
T Consensus 38 iCqICGD~Vg~t--~dGe~F-VACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 38 TCQICGDEIELT--VDGEPF-VACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred cccccccccCcC--CCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchhhc
Confidence 499998775442 344444 5666 52 22778899 455567999999999999833
No 54
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=52.45 E-value=5.9 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=24.3
Q ss_pred cCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHH
Q 025800 115 EGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEA 161 (248)
Q Consensus 115 eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~ 161 (248)
+++.. |.+|...... ..-.+.||. ..+|..|+.+
T Consensus 76 ~~~~~---C~vC~k~l~~-----~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTK---CSVCGKPLGN-----SVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCC---ccCcCCcCCC-----ceEEEeCCC-----eEEecccccC
Confidence 44555 9999987753 235678875 6799999864
No 55
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=50.49 E-value=2.6 Score=35.81 Aligned_cols=33 Identities=30% Similarity=0.641 Sum_probs=28.5
Q ss_pred ceeccccccCccccccHHHHHHHHHHcCCccccccc
Q 025800 140 PIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICN 175 (248)
Q Consensus 140 ~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk 175 (248)
.+-++|.|. .|+|-.|....|.++|+-.|---.
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~ 64 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSR 64 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCcC
Confidence 578999997 899999999999999998776433
No 56
>PLN02195 cellulose synthase A
Probab=49.81 E-value=17 Score=39.66 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=35.3
Q ss_pred CCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 120 CRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 120 ~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
..+|+||-+..... ..|++++ -|+=-| --|=+.|. ..=+..||..|+.||+.|+
T Consensus 6 ~~~c~~cgd~~~~~--~~g~~fv-aC~eC~--~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVD--SNGEAFV-ACHECS--YPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcC--CCCCeEE-EeccCC--Cccccchh-hhhhhcCCccCCccCCccc
Confidence 34699997765542 3455554 232111 22778898 4445569999999999998
No 57
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=48.54 E-value=21 Score=34.74 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=28.0
Q ss_pred eccccccCccccccHHHHHHHHHHcCC-----------ccccccccceeec
Q 025800 142 QLGCSCKDDLAAAHKQCAEAWFKIRGN-----------KTCEICNSIARNV 181 (248)
Q Consensus 142 i~PC~CkGsl~~VH~~CL~~W~k~kgn-----------~~CEICk~~~~nv 181 (248)
-.+|.|+- .==..|+-+||..|++ ..|+.|.++|-.+
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 45777762 2346899999987753 5999999999865
No 58
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.48 E-value=20 Score=34.34 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=34.5
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
+|-||....-.. .....++.+|. +-+=..|+.+.+. ++...|++|+..++.
T Consensus 5 ~CP~Ck~~~y~n--p~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 5 GCPRCKTTKYRN--PSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRK 55 (309)
T ss_pred CCCcCCCCCccC--cccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccch
Confidence 499998764431 11234667774 4466799999764 466799999987763
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=45.92 E-value=11 Score=36.41 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=34.2
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
.||||++-... +++.||. +-+-.-|+.+.+ ...-.|++|.+.+.-+
T Consensus 27 rC~IC~~~i~i-------p~~TtCg-----HtFCslCIR~hL--~~qp~CP~Cr~~~~es 72 (391)
T COG5432 27 RCRICDCRISI-------PCETTCG-----HTFCSLCIRRHL--GTQPFCPVCREDPCES 72 (391)
T ss_pred Hhhhhhheeec-------ceecccc-----cchhHHHHHHHh--cCCCCCccccccHHhh
Confidence 39999987653 7888886 335567888877 3456899999998754
No 60
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.93 E-value=23 Score=25.18 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhcc
Q 025800 221 HRFLNFLLACMVFAFVISWLFHF 243 (248)
Q Consensus 221 ~~flnfLlacmVfaFVi~WlFh~ 243 (248)
-|+-..+++++++++++.|++.+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788899999999998754
No 61
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.88 E-value=17 Score=35.22 Aligned_cols=54 Identities=22% Similarity=0.517 Sum_probs=36.2
Q ss_pred eeEeccCCCCCCC-CCCCceeccccccCccccccHHHHHHHHHHcC-----Cccccccccceeec
Q 025800 123 CRICHLCLESNSH-ESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG-----NKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~-e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kg-----n~~CEICk~~~~nv 181 (248)
|=||++....-.. +....+..+|. +..=..|+.+|...+. ++.|++|...-..|
T Consensus 164 CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 164 CGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred ceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 9999987654210 00112334464 4455689999998776 79999999887766
No 62
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.74 E-value=19 Score=39.72 Aligned_cols=52 Identities=23% Similarity=0.592 Sum_probs=34.7
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
+|+||-+..... ..|++++ -|+=- +| |=+.|. ..=...||..|++||+.|+-
T Consensus 19 iCqICGD~vg~~--~~Ge~FV-AC~eC---~FPVCrpCY-EYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 19 VCQICGDNVGKT--VDGEPFV-ACDVC---AFPVCRPCY-EYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred eeeecccccCcC--CCCCEEE-EeccC---CCccccchh-hhhhhcCCccCCccCCchhh
Confidence 599997765542 3456654 23211 22 677898 44445699999999999983
No 63
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=41.72 E-value=5.5 Score=42.82 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=24.8
Q ss_pred ccccHHHHHHHHHHcCCccccccccceeeccc
Q 025800 152 AAAHKQCAEAWFKIRGNKTCEICNSIARNVAG 183 (248)
Q Consensus 152 ~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~ 183 (248)
.|+|..|+..|-++ -.+|.||..+|--|.+
T Consensus 146 H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 146 HYFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred cccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 68999999999844 6799999999965533
No 64
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=41.55 E-value=11 Score=20.74 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=9.4
Q ss_pred cccccccceeeccc
Q 025800 170 TCEICNSIARNVAG 183 (248)
Q Consensus 170 ~CEICk~~~~nv~~ 183 (248)
.|++|+..|.+...
T Consensus 2 ~C~~C~~~~~~~~~ 15 (24)
T PF13894_consen 2 QCPICGKSFRSKSE 15 (24)
T ss_dssp E-SSTS-EESSHHH
T ss_pred CCcCCCCcCCcHHH
Confidence 59999999986544
No 65
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=39.28 E-value=22 Score=34.48 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=34.2
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc---------------------CCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR---------------------GNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k---------------------gn~~CEICk~~~~ 179 (248)
|-||+-+..+ .....+.+|- +|.|-.||.+.+..- -...|.||.....
T Consensus 118 CvICLygfa~----~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 118 CVICLYGFAS----SPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred eEEEEEeecC----CCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 8888776653 2235678886 999999998887631 1257999998654
No 66
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.78 E-value=30 Score=31.08 Aligned_cols=45 Identities=22% Similarity=0.574 Sum_probs=31.8
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccce
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIA 178 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~ 178 (248)
-|-||+...+.- .+.-.-|. +.+=++|++.-+ |....|++|+.+.
T Consensus 133 ~CPiCl~~~sek-----~~vsTkCG-----HvFC~~Cik~al--k~~~~CP~C~kkI 177 (187)
T KOG0320|consen 133 KCPICLDSVSEK-----VPVSTKCG-----HVFCSQCIKDAL--KNTNKCPTCRKKI 177 (187)
T ss_pred CCCceecchhhc-----cccccccc-----hhHHHHHHHHHH--HhCCCCCCccccc
Confidence 499999887641 23334443 556679999888 6689999999743
No 67
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.35 E-value=33 Score=27.01 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=22.3
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccc
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAG 183 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~ 183 (248)
.+|.||-+..... +.|++++. |+=- ---|=+.|.+-=++ .++..|..|++.|+-+.+
T Consensus 10 qiCqiCGD~VGl~--~~Ge~FVA-C~eC--~fPvCr~CyEYErk-eg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 10 QICQICGDDVGLT--ENGEVFVA-CHEC--AFPVCRPCYEYERK-EGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp -B-SSS--B--B---SSSSB--S--SSS-------HHHHHHHHH-TS-SB-TTT--B----TT
T ss_pred cccccccCccccC--CCCCEEEE-Eccc--CCccchhHHHHHhh-cCcccccccCCCcccccC
Confidence 4599997655432 34555543 3211 13377888875554 489999999999986644
No 68
>PLN02400 cellulose synthase
Probab=34.05 E-value=25 Score=38.88 Aligned_cols=54 Identities=24% Similarity=0.483 Sum_probs=34.6
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
+|+||-+..... +.|++++. |+=-+ --|=+.|.+ .=...||..|++||+.|+-.
T Consensus 38 iCqICGD~VG~t--~dGe~FVA-C~eCa--FPVCRpCYE-YERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 38 ICQICGDDVGVT--ETGDVFVA-CNECA--FPVCRPCYE-YERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred eeeecccccCcC--CCCCEEEE-EccCC--Cccccchhh-eecccCCccCcccCCccccc
Confidence 599997765542 35666542 32111 226678883 33446899999999999843
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=32.17 E-value=46 Score=38.99 Aligned_cols=49 Identities=35% Similarity=0.624 Sum_probs=35.1
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc--------CCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR--------GNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k--------gn~~CEICk~~~~ 179 (248)
+|-||+.+.-. ..-.+.+.|. +..|.+|..+=+..+ +-..|+||+.+..
T Consensus 3488 mCmICFTE~L~----AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3488 MCMICFTEALS----AAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred eEEEEehhhhC----CCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 49999865432 1235777776 789999998766544 2369999999885
No 70
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=31.41 E-value=25 Score=36.64 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=34.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHH---HcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFK---IRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k---~kgn~~CEICk~~~~ 179 (248)
|-+||+..+ +.+..-|+ +-.-+.|+..++. ...|.+|+.|+....
T Consensus 539 C~lc~d~ae-------d~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 539 CGLCHDPAE-------DYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ecccCChhh-------hhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 999998754 47888887 3366789998875 355799999987664
No 71
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.40 E-value=21 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.8
Q ss_pred CCcccccccccee
Q 025800 167 GNKTCEICNSIAR 179 (248)
Q Consensus 167 gn~~CEICk~~~~ 179 (248)
..+.|+.||+.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 4578999999985
No 72
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=31.04 E-value=19 Score=20.29 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.0
Q ss_pred cccccccceeeccc
Q 025800 170 TCEICNSIARNVAG 183 (248)
Q Consensus 170 ~CEICk~~~~nv~~ 183 (248)
.|++|+..|.....
T Consensus 2 ~C~~C~~~f~~~~~ 15 (23)
T PF00096_consen 2 KCPICGKSFSSKSN 15 (23)
T ss_dssp EETTTTEEESSHHH
T ss_pred CCCCCCCccCCHHH
Confidence 59999999985433
No 73
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=30.81 E-value=24 Score=35.43 Aligned_cols=49 Identities=20% Similarity=0.513 Sum_probs=37.6
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccc
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSI 177 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~ 177 (248)
..|-.|-+.... .+.+.--+||+ +..|..||...+...+.++|+-|...
T Consensus 366 L~Cg~CGe~~Gl---k~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 366 LYCGLCGESIGL---KNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhcC---Ccccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 349999655432 12345579998 88999999999988999999999943
No 74
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.95 E-value=31 Score=34.09 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=52.4
Q ss_pred hhccccchhhhhhchhHhhhhcccccc-CCCCC-CcCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHH
Q 025800 82 EIESAVHEIEIKVHLATAAAAATTTTT-NNNNR-VEGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCA 159 (248)
Q Consensus 82 ~~e~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~-~eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL 159 (248)
+..+|+|.+-|+..|.+......++-+ .+... +++-+....|-||..... .++.+||.=+-. ..||
T Consensus 44 ~~~t~~p~~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~sef~c~vc~~~l~-------~pv~tpcghs~c-----~~Cl 111 (398)
T KOG4159|consen 44 SRYTGVPNRCINEDPGKSSEETMADSTPKALLSGPEEIRSEFECCVCSRALY-------PPVVTPCGHSFC-----LECL 111 (398)
T ss_pred hhhccCCHHHHhcccchhhhhhhhhhhhhhhhccCccccchhhhhhhHhhcC-------CCcccccccccc-----HHHH
Confidence 334499988788887665332222222 12222 222244556999977654 378889863322 3366
Q ss_pred HHHHHHcCCccccccccceeecc
Q 025800 160 EAWFKIRGNKTCEICNSIARNVA 182 (248)
Q Consensus 160 ~~W~k~kgn~~CEICk~~~~nv~ 182 (248)
++ ....+..|++|+..+.-.+
T Consensus 112 ~r--~ld~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 112 DR--SLDQETECPLCRDELVELP 132 (398)
T ss_pred HH--HhccCCCCcccccccccch
Confidence 77 3347889999999998543
No 75
>PHA03164 hypothetical protein; Provisional
Probab=28.48 E-value=51 Score=26.10 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHH---HHHHHhhcccC
Q 025800 222 RFLNFLLACMVFA---FVISWLFHFNM 245 (248)
Q Consensus 222 ~flnfLlacmVfa---FVi~WlFh~~~ 245 (248)
+|--++|+|+.+| |+|.-|+-|||
T Consensus 57 tftFlvLtgLaIamILfiifvlyvFnV 83 (88)
T PHA03164 57 TFTFLVLTGLAIAMILFIIFVLYVFNV 83 (88)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHheee
Confidence 3444455555444 34443444443
No 76
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=42 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=32.1
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|-||+.+.- +.+..||+=+ --+.|+.+-+ -+++.|=.||.+...
T Consensus 424 lCpICyA~pi-------~Avf~PC~H~-----SC~~CI~qHl--mN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 424 LCPICYAGPI-------NAVFAPCSHR-----SCYGCITQHL--MNCKRCFFCKTTVID 468 (489)
T ss_pred cCcceecccc-------hhhccCCCCc-----hHHHHHHHHH--hcCCeeeEecceeee
Confidence 3999987643 5789999722 2234565554 567899999999884
No 77
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=24.14 E-value=34 Score=33.87 Aligned_cols=44 Identities=20% Similarity=0.535 Sum_probs=32.8
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
.|-||++=.. -+++.||. +-.-.-|+.+.+ +....|+.|-.+++
T Consensus 25 RC~IC~eyf~-------ip~itpCs-----HtfCSlCIR~~L--~~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 25 RCGICFEYFN-------IPMITPCS-----HTFCSLCIRKFL--SYKPQCPTCCVTVT 68 (442)
T ss_pred HHhHHHHHhc-------Cceecccc-----chHHHHHHHHHh--ccCCCCCceecccc
Confidence 3999997654 38999976 334456777777 44578999999986
No 78
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=23.89 E-value=40 Score=27.79 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCC
Q 025800 223 FLNFLLACMVFAFVISWLFHFNMP 246 (248)
Q Consensus 223 flnfLlacmVfaFVi~WlFh~~~~ 246 (248)
+++++-..+++++++.|+|+.|+|
T Consensus 34 ~~P~~g~~~~l~~~la~~~r~N~~ 57 (154)
T PF09835_consen 34 FLPIFGLQTVLAIALALLFRLNKP 57 (154)
T ss_pred HHhcchHHHHHHHHHHHHHHccHH
Confidence 455666788888999999999986
No 79
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=23.40 E-value=57 Score=36.13 Aligned_cols=52 Identities=27% Similarity=0.574 Sum_probs=34.0
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
+|.||-+..... ..|++++ -|+=- ---|=+.|. ..=...|+..|..||+.|+
T Consensus 17 ~c~iCGd~vg~~--~~Ge~FV-AC~eC--~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 17 TCRVCGDEVGVK--EDGQPFV-ACHVC--GFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred hhhccccccCcC--CCCCEEE-EeccC--CCccccchh-hhhhhcCCccCCccCCchh
Confidence 499997765542 3456664 23211 022677888 4444568999999999998
No 80
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=1.3e+02 Score=28.39 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=36.4
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH-cC-----Cccccccccce
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI-RG-----NKTCEICNSIA 178 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~-kg-----n~~CEICk~~~ 178 (248)
+-||.|-..+.+ |+.+.+-|- ...|-+||..|-.. -. .-.|+-|..+.
T Consensus 51 pNC~LC~t~La~-----gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLAS-----GDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCcccc-----Ccceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 449999888764 567778774 78999999999753 22 25899998764
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=23.27 E-value=43 Score=31.67 Aligned_cols=44 Identities=30% Similarity=0.489 Sum_probs=32.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~ 176 (248)
|-||.+-.... ...+-.++|. .+.|..|++.-... +-+|+||+.
T Consensus 161 cPic~e~l~~s---~~~~~~~~Cg-----H~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLS---FEDAGVLKCG-----HYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred CchhHHHhccc---cccCCccCcc-----cchHHHHHHHHhcc--CCCCCcccc
Confidence 78887665542 2345678887 78998888877744 499999998
No 82
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=21.45 E-value=1.2e+02 Score=21.11 Aligned_cols=17 Identities=35% Similarity=0.854 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025800 224 LNFLLACMVFAFVISWL 240 (248)
Q Consensus 224 lnfLlacmVfaFVi~Wl 240 (248)
+.||+-..++-.+|.||
T Consensus 14 l~~llflv~imliif~f 30 (43)
T PF11395_consen 14 LSFLLFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444455554
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=21.31 E-value=87 Score=34.21 Aligned_cols=54 Identities=24% Similarity=0.544 Sum_probs=40.3
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc-----CCccccccccceeeccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR-----GNKTCEICNSIARNVAG 183 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k-----gn~~CEICk~~~~nv~~ 183 (248)
-|-||.+..... ...| +|+.--+.+|..|+.+|-+.+ ..+.|.-|++.+..+|.
T Consensus 193 eCmIC~e~I~~t----~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~ 251 (950)
T KOG1952|consen 193 ECMICTERIKRT----APVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPK 251 (950)
T ss_pred EEEEeeeecccc----CCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCc
Confidence 399999887642 2234 466656889999999998643 34899999998887765
No 84
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=21.28 E-value=38 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=11.0
Q ss_pred cccccccceeeccc
Q 025800 170 TCEICNSIARNVAG 183 (248)
Q Consensus 170 ~CEICk~~~~nv~~ 183 (248)
.|+||+..|.+...
T Consensus 2 ~C~~C~~~f~s~~~ 15 (25)
T PF12874_consen 2 YCDICNKSFSSENS 15 (25)
T ss_dssp EETTTTEEESSHHH
T ss_pred CCCCCCCCcCCHHH
Confidence 69999999986543
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=21.18 E-value=79 Score=31.44 Aligned_cols=46 Identities=22% Similarity=0.503 Sum_probs=33.5
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcC--Ccccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRG--NKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kg--n~~CEICk~~~~ 179 (248)
|-.|.+..+.. +.-.-||.|. | +-|---|-.+|. |-.|+-|...|.
T Consensus 17 cplcie~mdit-----dknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 17 CPLCIEPMDIT-----DKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred Ccccccccccc-----cCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 99999887642 3456899994 2 456666766665 479999998884
No 86
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=1e+02 Score=30.03 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=26.9
Q ss_pred ccccccCccccccHHHHHHHHHHc-----------CCccccccccceeec
Q 025800 143 LGCSCKDDLAAAHKQCAEAWFKIR-----------GNKTCEICNSIARNV 181 (248)
Q Consensus 143 ~PC~CkGsl~~VH~~CL~~W~k~k-----------gn~~CEICk~~~~nv 181 (248)
.-|-|+ -.--+.||.+||.-+ |+-+|+.|...|..+
T Consensus 321 ~nc~cr---p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 321 ENCICR---PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccccc---cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 345565 345689999999754 457999999999865
No 87
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=20.85 E-value=40 Score=20.28 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.0
Q ss_pred ccccccccceee
Q 025800 169 KTCEICNSIARN 180 (248)
Q Consensus 169 ~~CEICk~~~~n 180 (248)
-.|++|+..|.+
T Consensus 15 ~~C~~C~k~F~~ 26 (26)
T PF13465_consen 15 YKCPYCGKSFSN 26 (26)
T ss_dssp EEESSSSEEESS
T ss_pred CCCCCCcCeeCc
Confidence 589999998863
No 88
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=20.77 E-value=36 Score=19.91 Aligned_cols=15 Identities=13% Similarity=0.521 Sum_probs=12.2
Q ss_pred cccccccceeecccc
Q 025800 170 TCEICNSIARNVAGA 184 (248)
Q Consensus 170 ~CEICk~~~~nv~~~ 184 (248)
.|++|+..|.+...+
T Consensus 3 ~C~~C~~~F~~~~~l 17 (27)
T PF13912_consen 3 ECDECGKTFSSLSAL 17 (27)
T ss_dssp EETTTTEEESSHHHH
T ss_pred CCCccCCccCChhHH
Confidence 699999999876543
No 89
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=80 Score=30.05 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=36.6
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
.+|-||+..+... ---....||. ..|-.+|+++.+ ++...|.||+....
T Consensus 222 yiCpvtrd~LtNt---~~ca~Lr~sg-----~Vv~~ecvEkli--r~D~v~pv~d~plk 270 (303)
T KOG3039|consen 222 YICPVTRDTLTNT---TPCAVLRPSG-----HVVTKECVEKLI--RKDMVDPVTDKPLK 270 (303)
T ss_pred eecccchhhhcCc---cceEEeccCC-----cEeeHHHHHHhc--cccccccCCCCcCc
Confidence 3799999888652 1113455654 558899999998 78999999999885
No 90
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=20.02 E-value=78 Score=27.32 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=40.3
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
..|-||++...+ ..+..|=.|-|. +.---=|+.-|---.---.|++|++.|+..
T Consensus 81 YeCnIC~etS~e------e~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAE------ERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccch------hhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 459999887543 368888888873 334445678887777778999999999854
Done!