Query 025800
Match_columns 248
No_of_seqs 204 out of 537
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 7.9E-19 2.7E-23 125.9 3.8 53 121-180 7-59 (60)
2 2d8s_A Cellular modulator of i 99.6 4E-16 1.4E-20 117.4 5.5 59 115-181 13-71 (80)
3 2ep4_A Ring finger protein 24; 98.1 3E-06 1E-10 60.1 5.3 51 122-183 17-67 (74)
4 2kiz_A E3 ubiquitin-protein li 98.1 3.2E-06 1.1E-10 59.2 5.0 49 122-181 16-64 (69)
5 2ect_A Ring finger protein 126 98.0 4.4E-06 1.5E-10 59.8 3.2 47 123-180 18-64 (78)
6 1x4j_A Ring finger protein 38; 97.9 4.8E-06 1.6E-10 59.5 2.3 48 122-180 25-72 (75)
7 2l0b_A E3 ubiquitin-protein li 97.9 8.8E-06 3E-10 60.8 3.6 46 123-179 43-88 (91)
8 2ecm_A Ring finger and CHY zin 97.9 8.4E-06 2.9E-10 54.4 3.1 47 123-179 8-54 (55)
9 1iym_A EL5; ring-H2 finger, ub 97.8 5.9E-06 2E-10 55.3 2.1 46 123-179 8-54 (55)
10 2ea6_A Ring finger protein 4; 97.8 1.2E-05 4.1E-10 55.6 3.3 50 123-179 18-67 (69)
11 1v87_A Deltex protein 2; ring- 97.8 1.4E-05 4.8E-10 61.1 3.7 55 123-182 28-96 (114)
12 2yur_A Retinoblastoma-binding 97.8 2.1E-05 7.3E-10 56.3 4.3 45 123-179 18-63 (74)
13 2ct2_A Tripartite motif protei 97.7 4.2E-05 1.4E-09 55.3 5.1 51 122-180 17-68 (88)
14 3ztg_A E3 ubiquitin-protein li 97.7 4.7E-05 1.6E-09 56.0 4.9 48 122-181 15-63 (92)
15 2csy_A Zinc finger protein 183 97.7 5.6E-05 1.9E-09 54.6 5.1 45 121-179 16-60 (81)
16 2ecl_A Ring-box protein 2; RNF 97.6 3.1E-05 1.1E-09 56.8 3.4 51 123-180 18-76 (81)
17 2d8t_A Dactylidin, ring finger 97.6 2.8E-05 9.5E-10 55.0 2.7 44 122-179 17-60 (71)
18 2ecw_A Tripartite motif-contai 97.6 7.5E-05 2.6E-09 53.2 4.9 46 122-179 21-70 (85)
19 1t1h_A Gspef-atpub14, armadill 97.6 0.0001 3.5E-09 52.6 5.5 63 122-197 10-75 (78)
20 2ysl_A Tripartite motif-contai 97.5 6E-05 2E-09 52.9 2.9 46 122-179 22-68 (73)
21 3ng2_A RNF4, snurf, ring finge 97.5 3.1E-05 1.1E-09 54.0 1.4 50 123-179 13-62 (71)
22 2ecv_A Tripartite motif-contai 97.4 0.00011 3.6E-09 52.4 4.0 46 122-179 21-70 (85)
23 1chc_A Equine herpes virus-1 r 97.4 8.5E-05 2.9E-09 51.6 3.2 46 123-181 8-53 (68)
24 2ecj_A Tripartite motif-contai 97.4 0.00011 3.8E-09 49.2 3.4 41 122-174 17-58 (58)
25 2djb_A Polycomb group ring fin 97.4 0.00018 6.1E-09 51.0 4.5 46 122-181 17-63 (72)
26 2ysj_A Tripartite motif-contai 97.4 0.00015 5.2E-09 49.8 4.0 41 122-174 22-63 (63)
27 3dpl_R Ring-box protein 1; ubi 97.4 0.00016 5.4E-09 56.5 4.5 50 123-179 40-100 (106)
28 2ecy_A TNF receptor-associated 97.4 6.2E-05 2.1E-09 52.4 1.9 45 122-179 17-61 (66)
29 2ct0_A Non-SMC element 1 homol 97.3 0.00014 4.6E-09 54.1 3.6 47 123-180 18-64 (74)
30 2ecn_A Ring finger protein 141 97.2 8.7E-05 3E-09 51.9 1.3 44 122-180 17-60 (70)
31 2xeu_A Ring finger protein 4; 97.1 9.1E-05 3.1E-09 50.3 0.5 50 123-179 6-55 (64)
32 3fl2_A E3 ubiquitin-protein li 97.0 0.00038 1.3E-08 54.1 3.5 46 122-180 54-99 (124)
33 2egp_A Tripartite motif-contai 96.9 0.00011 3.9E-09 52.1 -0.2 46 122-179 14-64 (79)
34 2ckl_B Ubiquitin ligase protei 96.9 0.00044 1.5E-08 56.2 3.2 46 123-181 57-103 (165)
35 4ayc_A E3 ubiquitin-protein li 96.9 0.00035 1.2E-08 55.6 2.2 45 123-181 56-100 (138)
36 2y43_A E3 ubiquitin-protein li 96.9 0.00087 3E-08 50.0 4.0 44 123-180 25-69 (99)
37 3lrq_A E3 ubiquitin-protein li 96.8 0.00062 2.1E-08 51.4 2.9 44 123-179 25-69 (100)
38 1z6u_A NP95-like ring finger p 96.7 0.0012 4.2E-08 53.8 4.2 47 122-181 80-126 (150)
39 1jm7_A BRCA1, breast cancer ty 96.6 0.00088 3E-08 50.4 2.5 45 123-179 24-69 (112)
40 3hct_A TNF receptor-associated 96.5 0.0021 7.1E-08 49.7 4.0 45 123-180 21-65 (118)
41 1g25_A CDK-activating kinase a 96.5 0.001 3.4E-08 46.0 2.0 48 123-179 6-54 (65)
42 1e4u_A Transcriptional repress 96.4 0.0019 6.4E-08 47.6 3.2 57 115-183 9-65 (78)
43 4a0k_B E3 ubiquitin-protein li 96.4 0.00059 2E-08 54.5 0.2 50 123-179 51-111 (117)
44 2ckl_A Polycomb group ring fin 96.3 0.0014 4.9E-08 49.6 2.0 45 123-181 18-63 (108)
45 4ap4_A E3 ubiquitin ligase RNF 96.1 0.0016 5.5E-08 49.6 1.3 51 123-180 10-60 (133)
46 1rmd_A RAG1; V(D)J recombinati 96.0 0.0037 1.3E-07 47.8 3.1 46 122-180 25-70 (116)
47 3l11_A E3 ubiquitin-protein li 95.9 0.00093 3.2E-08 51.1 -0.9 45 123-180 18-62 (115)
48 3k1l_B Fancl; UBC, ring, RWD, 95.7 0.0057 2E-07 57.9 3.6 50 123-179 311-372 (381)
49 4ap4_A E3 ubiquitin ligase RNF 95.6 0.0025 8.5E-08 48.6 0.6 50 123-179 75-124 (133)
50 2y1n_A E3 ubiquitin-protein li 95.5 0.0082 2.8E-07 56.8 3.7 48 122-182 334-381 (389)
51 2kr4_A Ubiquitin conjugation f 95.3 0.036 1.2E-06 40.8 5.9 63 121-197 15-80 (85)
52 4ic3_A E3 ubiquitin-protein li 95.2 0.0029 9.9E-08 45.4 -0.3 41 123-181 27-68 (74)
53 2kre_A Ubiquitin conjugation f 95.0 0.03 1E-06 42.7 5.0 62 121-196 30-94 (100)
54 1wgm_A Ubiquitin conjugation f 95.0 0.023 8E-07 43.2 4.2 64 121-197 23-89 (98)
55 2vje_B MDM4 protein; proto-onc 94.9 0.014 4.7E-07 40.8 2.5 45 123-181 10-57 (63)
56 1jm7_B BARD1, BRCA1-associated 94.9 0.0056 1.9E-07 47.2 0.5 41 123-179 25-66 (117)
57 1bor_A Transcription factor PM 94.7 0.0056 1.9E-07 41.6 0.1 43 121-180 7-49 (56)
58 3hcs_A TNF receptor-associated 94.7 0.026 9E-07 45.7 4.0 46 122-180 20-65 (170)
59 2c2l_A CHIP, carboxy terminus 94.5 0.035 1.2E-06 47.1 4.5 63 121-196 209-274 (281)
60 2vje_A E3 ubiquitin-protein li 94.2 0.022 7.4E-07 39.9 2.2 45 123-181 11-58 (64)
61 3knv_A TNF receptor-associated 93.9 0.011 3.7E-07 47.7 0.1 44 122-178 33-76 (141)
62 2ea5_A Cell growth regulator w 93.6 0.075 2.6E-06 37.7 4.1 45 122-184 17-62 (68)
63 2yu4_A E3 SUMO-protein ligase 93.3 0.1 3.5E-06 38.9 4.6 65 122-198 9-84 (94)
64 3nw0_A Non-structural maintena 93.2 0.032 1.1E-06 49.1 1.9 49 121-181 181-230 (238)
65 2ecg_A Baculoviral IAP repeat- 93.0 0.049 1.7E-06 38.8 2.4 41 123-181 28-69 (75)
66 2f42_A STIP1 homology and U-bo 93.0 0.084 2.9E-06 44.9 4.1 62 122-196 108-172 (179)
67 3t6p_A Baculoviral IAP repeat- 88.7 0.065 2.2E-06 49.5 -0.7 43 121-181 296-339 (345)
68 1wim_A KIAA0161 protein; ring 86.9 0.45 1.5E-05 34.9 3.1 46 123-178 8-62 (94)
69 3htk_C E3 SUMO-protein ligase 86.7 0.54 1.9E-05 42.6 4.1 53 115-179 176-231 (267)
70 2yho_A E3 ubiquitin-protein li 85.1 0.26 9E-06 35.8 1.0 41 123-181 21-62 (79)
71 2bay_A PRE-mRNA splicing facto 79.5 1.1 3.7E-05 31.2 2.4 44 122-179 5-49 (61)
72 2l43_A N-teminal domain from h 74.5 0.39 1.3E-05 36.2 -1.2 48 123-177 28-75 (88)
73 2lri_C Autoimmune regulator; Z 67.1 2.1 7.2E-05 30.6 1.4 45 123-179 15-61 (66)
74 1weo_A Cellulose synthase, cat 54.0 13 0.00046 28.8 3.9 56 120-181 16-71 (93)
75 2ku3_A Bromodomain-containing 51.3 3.2 0.00011 30.0 0.1 47 123-176 19-65 (71)
76 3v43_A Histone acetyltransfera 34.9 19 0.00065 27.5 2.1 38 121-161 6-43 (112)
77 2l5u_A Chromodomain-helicase-D 33.9 11 0.00038 26.1 0.6 43 123-177 14-58 (61)
78 1wev_A Riken cDNA 1110020M19; 33.1 3.1 0.00011 31.1 -2.6 51 122-179 18-74 (88)
79 2k16_A Transcription initiatio 32.7 8.2 0.00028 27.3 -0.3 47 123-178 21-69 (75)
80 2ki9_A Cannabinoid receptor 2; 27.4 18 0.00062 21.6 0.7 14 227-240 7-20 (33)
81 1weu_A Inhibitor of growth fam 27.2 11 0.00039 28.6 -0.4 25 152-178 60-86 (91)
82 1znf_A 31ST zinc finger from X 25.6 21 0.0007 18.3 0.6 13 170-182 3-15 (27)
83 2yt5_A Metal-response element- 24.6 24 0.00083 24.1 1.0 48 123-177 9-61 (66)
84 1wen_A Inhibitor of growth fam 24.5 16 0.00056 26.2 0.1 25 152-178 40-66 (71)
85 1ard_A Yeast transcription fac 24.3 22 0.00075 18.4 0.6 15 169-183 3-17 (29)
86 2kvh_A Zinc finger and BTB dom 24.0 22 0.00076 18.4 0.6 15 169-183 4-18 (27)
87 2lvu_A Zinc finger and BTB dom 29.8 16 0.00056 18.8 0.0 14 170-183 4-17 (26)
88 2lvt_A Zinc finger and BTB dom 28.4 18 0.00061 19.0 0.0 15 170-184 4-18 (29)
89 2kvf_A Zinc finger and BTB dom 22.8 25 0.00085 18.2 0.6 14 169-182 4-17 (28)
90 3u5n_A E3 ubiquitin-protein li 22.4 8.6 0.00029 32.3 -2.1 44 123-178 10-55 (207)
91 1rik_A E6APC1 peptide; E6-bind 21.6 27 0.00093 18.1 0.6 15 169-183 3-17 (29)
92 2lvr_A Zinc finger and BTB dom 27.0 20 0.00067 18.8 0.0 16 169-184 4-19 (30)
93 2m0f_A Zinc finger and BTB dom 21.3 27 0.00093 17.9 0.6 15 169-183 3-17 (29)
94 2m0d_A Zinc finger and BTB dom 21.2 27 0.00094 18.0 0.6 15 169-183 4-18 (30)
95 1xrd_A LH-1, light-harvesting 21.2 66 0.0023 22.4 2.7 30 216-245 3-32 (52)
96 1f62_A Transcription factor WS 21.0 16 0.00056 23.9 -0.5 45 123-176 3-49 (51)
97 2e6r_A Jumonji/ARID domain-con 20.9 7 0.00024 29.4 -2.6 48 122-178 18-67 (92)
98 3ql9_A Transcriptional regulat 20.4 80 0.0027 25.4 3.4 42 123-176 60-110 (129)
99 4gne_A Histone-lysine N-methyl 20.1 21 0.00073 27.7 -0.1 49 115-178 13-68 (107)
100 1klr_A Zinc finger Y-chromosom 20.1 29 0.001 17.9 0.5 15 169-183 3-17 (30)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.74 E-value=7.9e-19 Score=125.89 Aligned_cols=53 Identities=30% Similarity=0.803 Sum_probs=47.1
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.+||||+.+. ++++++||+|+|++++||+.||.+|++.+++.+||||+++|+.
T Consensus 7 ~~CrIC~~~~-------~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 7 PVCWICNEEL-------GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CEETTTTEEC-------SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CEeEEeecCC-------CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3499999863 2357899999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=117.36 Aligned_cols=59 Identities=27% Similarity=0.642 Sum_probs=50.7
Q ss_pred cCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 115 EGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 115 eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
+++.. ||||++..+. ++++++||+|+|+++++|+.||++|++.+++.+|+||++.|...
T Consensus 13 ~~~~~---C~IC~~~~~~-----~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDI---CRICHCEGDD-----ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCC---CSSSCCCCCS-----SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCC---CeEcCccccC-----CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34455 9999987543 45789999999999999999999999999999999999999754
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3e-06 Score=60.14 Aligned_cols=51 Identities=25% Similarity=0.613 Sum_probs=38.4
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAG 183 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~ 183 (248)
.|.||++.... .....++||. +.+|..|+.+|++.+ .+|++|+..+..+..
T Consensus 17 ~C~IC~~~~~~----~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 17 LCAVCLEDFKP----RDELGICPCK-----HAFHRKCLIKWLEVR--KVCPLCNMPVLQLAQ 67 (74)
T ss_dssp BCSSSCCBCCS----SSCEEEETTT-----EEEEHHHHHHHHHHC--SBCTTTCCBCSSCCS
T ss_pred CCcCCCcccCC----CCcEEEcCCC-----CEecHHHHHHHHHcC--CcCCCcCcccccccc
Confidence 39999987654 2234566874 679999999999764 499999998876543
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.11 E-value=3.2e-06 Score=59.23 Aligned_cols=49 Identities=29% Similarity=0.590 Sum_probs=38.1
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
.|.||+..... ......+||. +.+|..|+.+|++.+ .+|++|+..+...
T Consensus 16 ~C~IC~~~~~~----~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 16 KCTICLSILEE----GEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEAQ 64 (69)
T ss_dssp SBTTTTBCCCS----SSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCSC
T ss_pred CCeeCCccccC----CCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccCc
Confidence 39999887653 2346778875 669999999999764 5799999988754
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.95 E-value=4.4e-06 Score=59.83 Aligned_cols=47 Identities=21% Similarity=0.595 Sum_probs=36.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|.||++.... .....++||. +.+|..|+.+|++ .+.+|++|+..+..
T Consensus 18 C~IC~~~~~~----~~~~~~~~C~-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 18 CPVCKEDYAL----GESVRQLPCN-----HLFHDSCIVPWLE--QHDSCPVCRKSLTG 64 (78)
T ss_dssp CTTTTSCCCT----TSCEEECTTS-----CEEETTTTHHHHT--TTCSCTTTCCCCCC
T ss_pred CeeCCccccC----CCCEEEeCCC-----CeecHHHHHHHHH--cCCcCcCcCCccCC
Confidence 9999987653 2234567875 6799999999995 45799999998864
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=4.8e-06 Score=59.50 Aligned_cols=48 Identities=31% Similarity=0.741 Sum_probs=36.8
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|.||++.... ......+||. +.+|..|+.+|++. +.+|++|+..+..
T Consensus 25 ~C~IC~~~~~~----~~~~~~l~C~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 25 LCVVCMCDFES----RQLLRVLPCN-----HEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp EETTTTEECCB----TCEEEEETTT-----EEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCeECCcccCC----CCeEEEECCC-----CHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 39999987653 1234678875 67999999999976 4689999988753
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.86 E-value=8.8e-06 Score=60.77 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=36.0
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||++.... ......+||. +.+|..|+.+|++ .+.+|++|+..+.
T Consensus 43 C~IC~~~~~~----~~~~~~l~C~-----H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 43 CPICCSEYVK----GDVATELPCH-----HYFHKPCVSIWLQ--KSGTCPVCRCMFP 88 (91)
T ss_dssp ETTTTEECCT----TCEEEEETTT-----EEEEHHHHHHHHT--TTCBCTTTCCBSS
T ss_pred CcccChhhcC----CCcEEecCCC-----ChHHHHHHHHHHH--cCCcCcCcCccCC
Confidence 9999977653 2235678875 7799999999995 4569999998764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.86 E-value=8.4e-06 Score=54.42 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=37.2
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|.||++..... .....++||. +.+|..|+.+|++.+ ..|++|+..+.
T Consensus 8 C~IC~~~~~~~---~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 8 CPICLEDIHTS---RVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CTTTCCCCCTT---TSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CcccChhhcCC---CcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 99999876432 2246788984 679999999999876 89999998764
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.84 E-value=5.9e-06 Score=55.31 Aligned_cols=46 Identities=26% Similarity=0.661 Sum_probs=35.6
Q ss_pred eeEeccCCCCCCCCCCCceecc-ccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLG-CSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~P-C~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||++....+ .....+| |. +..|..|+.+|++. +.+|++|+..+.
T Consensus 8 C~IC~~~~~~~----~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 8 CAVCLAELEDG----EEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CTTTCCCCCTT----SCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CccCCccccCC----CceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 99999887542 2356676 64 66999999999954 678999998764
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.2e-05 Score=55.60 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=36.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||++............+.+||. +.+|..|+.+|++. +..|++|+..+.
T Consensus 18 C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 18 CPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 999998754310011123678885 67999999999976 679999998875
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.79 E-value=1.4e-05 Score=61.06 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=39.3
Q ss_pred eeEeccCCCCCCC----------CCC-CceeccccccCccccccHHHHHHHHHH---cCCccccccccceeecc
Q 025800 123 CRICHLCLESNSH----------ESG-VPIQLGCSCKDDLAAAHKQCAEAWFKI---RGNKTCEICNSIARNVA 182 (248)
Q Consensus 123 CRIC~~~~e~~~~----------e~g-~~li~PC~CkGsl~~VH~~CL~~W~k~---kgn~~CEICk~~~~nv~ 182 (248)
|-||++....... ... ...++||. +.+|..||.+|+.. +...+|++|+..|....
T Consensus 28 C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 28 CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp ETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 9999988654210 000 11267886 78999999999976 45789999999997543
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.78 E-value=2.1e-05 Score=56.32 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=38.0
Q ss_pred eeEeccCCCCCCCCCCCceecc-ccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLG-CSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~P-C~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|.||+.... +++.+| |. +..|+.|+.+|++.++...|++|+..+.
T Consensus 18 C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 18 CLICKDIMT-------DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSSSCCCCT-------TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CcCCChHHh-------CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 999987654 378888 75 6789999999999888889999999764
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=4.2e-05 Score=55.30 Aligned_cols=51 Identities=25% Similarity=0.524 Sum_probs=39.3
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc-CCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR-GNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k-gn~~CEICk~~~~n 180 (248)
.|-||+...... ...+..+||. +.+|..|+.+|++.+ +...|++|+..+..
T Consensus 17 ~C~IC~~~~~~~---~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 17 ECPICMESFTEE---QLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp BCTTTCCBCCTT---SSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCccCCcccccc---CCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 399998776531 1127788874 779999999999876 46899999998763
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.67 E-value=4.7e-05 Score=56.03 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=39.4
Q ss_pred ceeEeccCCCCCCCCCCCceecc-ccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLG-CSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~P-C~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
.|-||+.... +++.+| |. +..++.|+.+|+..++...|++|+..+...
T Consensus 15 ~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 15 LCLICKDIMT-------DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp EETTTTEECS-------SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred CCCCCChhhc-------CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 4999987654 478888 64 668999999999988889999999998433
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=5.6e-05 Score=54.62 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=37.0
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
..|.||+.... +++++||. +.+|..|+.+|++. ...|++|+..+.
T Consensus 16 ~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQ-------NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCC-------SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCcCCCchhc-------CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 45999987653 37788885 66899999999964 679999999986
No 16
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=3.1e-05 Score=56.83 Aligned_cols=51 Identities=24% Similarity=0.619 Sum_probs=35.8
Q ss_pred eeEeccCCCCC------CC-CCCCceecc-ccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESN------SH-ESGVPIQLG-CSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~------~~-e~g~~li~P-C~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|-||+...... +. .....+.+| |. +..|..|+.+|++. +.+|++|+..+..
T Consensus 18 C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 18 CAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQ--NNRCPLCQQDWVV 76 (81)
T ss_dssp BTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred CcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHh--CCCCCCcCCCcch
Confidence 99998877531 00 112244555 54 78999999999965 4699999998763
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=2.8e-05 Score=55.05 Aligned_cols=44 Identities=23% Similarity=0.476 Sum_probs=35.9
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
.|.||++... +++.+||. +.+|..|+.+|++. +..|++|+..+.
T Consensus 17 ~C~IC~~~~~-------~~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 17 ECAICLQTCV-------HPVSLPCK-----HVFCYLCVKGASWL--GKRCALCRQEIP 60 (71)
T ss_dssp BCSSSSSBCS-------SEEEETTT-----EEEEHHHHHHCTTC--SSBCSSSCCBCC
T ss_pred CCccCCcccC-------CCEEccCC-----CHHHHHHHHHHHHC--CCcCcCcCchhC
Confidence 3999987653 36788875 67999999999954 589999999886
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.59 E-value=7.5e-05 Score=53.19 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=37.6
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc----CCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR----GNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k----gn~~CEICk~~~~ 179 (248)
.|.||+.... +++.+||. +.+|..|+.+|++.. +...|++|+..+.
T Consensus 21 ~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 21 TCPICLELLK-------EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp SCTTTCSCCS-------SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCcCCChhhC-------cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3999987654 36788875 669999999999874 4789999999876
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.59 E-value=0.0001 Score=52.59 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=45.4
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee--c-cccchHHHHHhHHHhh
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN--V-AGATEIETAELSNEVN 197 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n--v-~~~~~~~~~E~wne~~ 197 (248)
.|-||+.... +++++||. +..++.|+.+|++ +++.+|++|+..+.. + |...-...++.|.+.+
T Consensus 10 ~C~IC~~~~~-------~Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 10 RCPISLELMK-------DPVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp SCTTTSCCCS-------SEEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred CCCCcccccc-------CCEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 3999987654 47888875 6789999999996 357899999999853 2 3322235667776553
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=6e-05 Score=52.94 Aligned_cols=46 Identities=26% Similarity=0.580 Sum_probs=36.9
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH-cCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI-RGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~-kgn~~CEICk~~~~ 179 (248)
.|.||+.... +++.+||. +.+|..|+.+|++. +++..|++|+..+.
T Consensus 22 ~C~IC~~~~~-------~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 22 ICPICLDILQ-------KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp BCTTTCSBCS-------SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred EeccCCcccC-------CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 4999987653 36778874 66999999999974 45679999999875
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.46 E-value=3.1e-05 Score=53.99 Aligned_cols=50 Identities=20% Similarity=0.398 Sum_probs=36.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||++..............+||. +..|..|+.+|++.+ .+|++|+..+.
T Consensus 13 C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 13 CPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 999987654310001223678886 679999999999764 69999999886
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.00011 Score=52.40 Aligned_cols=46 Identities=28% Similarity=0.650 Sum_probs=37.4
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH----cCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI----RGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~----kgn~~CEICk~~~~ 179 (248)
.|.||+.... ++..+||. +.+|..|+.+|++. .+...|++|+..+.
T Consensus 21 ~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 21 TCPICLELLT-------QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCTTTCSCCS-------SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCcccC-------CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3999988754 35677875 66899999999987 45789999999886
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.42 E-value=8.5e-05 Score=51.58 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=36.6
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||+..... ....+||. +..|..|+.+|++. +..|++|+..+..+
T Consensus 8 C~IC~~~~~~------~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 8 CPICLEDPSN------YSMALPCL-----HAFCYVCITRWIRQ--NPTCPLCKVPVESV 53 (68)
T ss_dssp CSSCCSCCCS------CEEETTTT-----EEESTTHHHHHHHH--SCSTTTTCCCCCCE
T ss_pred CeeCCccccC------CcEecCCC-----CeeHHHHHHHHHhC--cCcCcCCChhhHhh
Confidence 9999887542 24788875 66999999999965 46999999998754
No 24
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00011 Score=49.20 Aligned_cols=41 Identities=24% Similarity=0.768 Sum_probs=32.5
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH-cCCcccccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI-RGNKTCEIC 174 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~-kgn~~CEIC 174 (248)
.|.||+..... +.++||. +..|+.|+.+|++. +++..|++|
T Consensus 17 ~C~IC~~~~~~-------p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 17 SCSVCLEYLKE-------PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp BCSSSCCBCSS-------CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCccCCcccCc-------cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 49999877643 5678875 66899999999864 567899988
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00018 Score=50.96 Aligned_cols=46 Identities=24% Similarity=0.540 Sum_probs=36.3
Q ss_pred ceeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
.|.||+.... +++.+ ||. +.+|+.|+.+|++. ...|++|+..+...
T Consensus 17 ~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 17 LCSICKGYLI-------DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp SCTTTSSCCS-------SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred CCCCCChHHH-------CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3999987654 25554 885 66899999999966 67999999998643
No 26
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00015 Score=49.83 Aligned_cols=41 Identities=27% Similarity=0.624 Sum_probs=32.5
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc-CCcccccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR-GNKTCEIC 174 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k-gn~~CEIC 174 (248)
.|.||+.... +++++||. +..|+.|+.+|++.+ +...|++|
T Consensus 22 ~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 22 ICPICLDILQ-------KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp BCTTTCSBCS-------SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCcCCchhC-------CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3999987654 36778875 669999999999853 56799998
No 27
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.37 E-value=0.00016 Score=56.54 Aligned_cols=50 Identities=24% Similarity=0.431 Sum_probs=35.8
Q ss_pred eeEeccCCCCCC-----------CCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNS-----------HESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~-----------~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||+...+..- .+....+.+||. +..|..|+.+|++. +.+|++|+..|.
T Consensus 40 CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 40 CAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 999987765320 011123456775 78999999999954 789999999975
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=6.2e-05 Score=52.40 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=35.8
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
.|.||+.... +++.+||. +..|+.|+.+|++ +++..|++|+..+.
T Consensus 17 ~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 17 KCEKCHLVLC-------SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp ECTTTCCEES-------SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CCCCCChHhc-------CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 3999987654 35667775 6689999999997 56779999999875
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00014 Score=54.10 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=35.8
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|-||+..... + +.-+ .|. ..+|..||.+||+.+++.+|++|+..+..
T Consensus 18 C~IC~~~i~~-----g--~~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 18 CNICHSLLIQ-----G--QSCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CSSSCCBCSS-----S--EECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcchhhHccc-----C--CccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 9999877643 1 2111 443 66899999999988888999999998863
No 30
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=8.7e-05 Score=51.94 Aligned_cols=44 Identities=23% Similarity=0.576 Sum_probs=35.8
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|.||+.... + .++||. +.+|..|+.+|++ .+..|++|+..+..
T Consensus 17 ~C~IC~~~~~-------~-~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 17 ECCICMDGRA-------D-LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCSSSCCSCC-------S-EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCeeCCcCcc-------C-cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 3999987642 2 788985 6699999999996 68899999988764
No 31
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.11 E-value=9.1e-05 Score=50.34 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=36.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||++..............+||. +..|..|+.+|++. +.+|++|+..+.
T Consensus 6 C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 6 CPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 999987654310001123678886 67999999999976 679999999875
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.04 E-value=0.00038 Score=54.10 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=37.5
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|.||+.... +++.+||. +..|+.|+.+|++ .+...|++|+..+..
T Consensus 54 ~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVF-------RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCS-------SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCcCChHHc-------CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 3999987654 47888875 6689999999998 455699999999975
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.95 E-value=0.00011 Score=52.10 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=36.9
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc-----CCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR-----GNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k-----gn~~CEICk~~~~ 179 (248)
.|.||+.... ++..+||. +.+|+.|+.+|++.+ +...|++|+..+.
T Consensus 14 ~C~IC~~~~~-------~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 14 TCPICLELLT-------EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp EETTTTEECS-------SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCcCCCcccC-------CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3999987654 35677875 668999999999763 4789999999986
No 34
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.95 E-value=0.00044 Score=56.22 Aligned_cols=46 Identities=24% Similarity=0.474 Sum_probs=36.4
Q ss_pred eeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|-||+.... +++.. ||. +.+|..|+.+|++. ++..|++|+..+...
T Consensus 57 C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 57 CPICLDMLK-------NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVSK 103 (165)
T ss_dssp CTTTSSBCS-------SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCSG
T ss_pred CcccChHhh-------CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCCc
Confidence 999987654 35655 776 67999999999973 478999999998543
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.90 E-value=0.00035 Score=55.59 Aligned_cols=45 Identities=24% Similarity=0.640 Sum_probs=36.9
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||+.... ++..+||. +.+|..|+.+|++ .+..|++|+..+...
T Consensus 56 C~iC~~~~~-------~~~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 56 CIICSEYFI-------EAVTLNCA-----HSFCSYCINEWMK--RKIECPICRKDIKSK 100 (138)
T ss_dssp CTTTCSBCS-------SEEEETTS-----CEEEHHHHHHHTT--TCSBCTTTCCBCCCE
T ss_pred CcccCcccC-------CceECCCC-----CCccHHHHHHHHH--cCCcCCCCCCcCCCC
Confidence 999987653 47888985 6799999999995 467899999988654
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.86 E-value=0.00087 Score=49.98 Aligned_cols=44 Identities=18% Similarity=0.542 Sum_probs=35.4
Q ss_pred eeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|.||+.... ++... ||. +.+|..|+.+|++ .+..|++|+..+..
T Consensus 25 C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 25 CGICFEYFN-------IAMIIPQCS-----HNYCSLCIRKFLS--YKTQCPTCCVTVTE 69 (99)
T ss_dssp CTTTCSBCS-------SEEECTTTC-----CEEEHHHHHHHHT--TCCBCTTTCCBCCG
T ss_pred cccCChhhC-------CcCEECCCC-----CHhhHHHHHHHHH--CCCCCCCCCCcCCh
Confidence 999987654 36665 776 6689999999996 45799999999874
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.82 E-value=0.00062 Score=51.42 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=36.8
Q ss_pred eeEeccCCCCCCCCCCCcee-ccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQ-LGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li-~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||+.... +++. ++|. +..|..|+.+|++.++ ..|++|+..+.
T Consensus 25 C~IC~~~~~-------~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 25 CFICMEKLR-------DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp CTTTCSBCS-------SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CccCCcccc-------CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 999988664 3677 8886 6799999999998764 79999999985
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.0012 Score=53.77 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=38.0
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
.|.||+.... +++++||. +.+++.|+.+|++. +...|++|+..+..-
T Consensus 80 ~C~IC~~~~~-------~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 80 MCVCCQELVY-------QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp BCTTTSSBCS-------SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred EeecCChhhc-------CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 4999987654 47888886 66899999999974 556999999998754
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.62 E-value=0.00088 Score=50.43 Aligned_cols=45 Identities=22% Similarity=0.566 Sum_probs=36.4
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHc-CCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIR-GNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~k-gn~~CEICk~~~~ 179 (248)
|.||+.... ++..+||. +.+|..|+.+|+..+ +...|++|+..+.
T Consensus 24 C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 24 CPICLELIK-------EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp CSSSCCCCS-------SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CcccChhhc-------CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 999987654 35677875 678999999999864 4579999999886
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.51 E-value=0.0021 Score=49.69 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=36.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|.||+.... +++.+||. +..++.|+.+|++.++. .|++|+..+..
T Consensus 21 C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 21 CPICLMALR-------EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCcCChhhc-------CeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 999987654 36788874 66999999999986543 89999998864
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.51 E-value=0.001 Score=46.00 Aligned_cols=48 Identities=23% Similarity=0.462 Sum_probs=34.9
Q ss_pred eeEecc-CCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHL-CLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~-~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||+. ..... ....+++||. +.+|+.|+.+|+. ++...|++|+..+.
T Consensus 6 C~IC~~~~~~~~---~~~~~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 6 CPRCKTTKYRNP---SLKLMVNVCG-----HTLCESCVDLLFV-RGAGNCPECGTPLR 54 (65)
T ss_dssp CSTTTTHHHHCS---SCCEEECTTC-----CCEEHHHHHHHHH-TTSSSCTTTCCCCS
T ss_pred CCcCCCCccCCC---ccCeecCCCC-----CHhHHHHHHHHHH-cCCCcCCCCCCccc
Confidence 999987 33321 1112567886 6689999999986 35679999999885
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.43 E-value=0.0019 Score=47.65 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=42.4
Q ss_pred cCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeeccc
Q 025800 115 EGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVAG 183 (248)
Q Consensus 115 eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~~ 183 (248)
+++.. |-||++.... .+....||.|. +.+++.|+.+|.+. ++..|++|+..|..-+.
T Consensus 9 ~~~~~---CpICle~~~~-----~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVE---CPLCMEPLEI-----DDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCB---CTTTCCBCCT-----TTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSS
T ss_pred ccCCc---CCccCccCcc-----ccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCch
Confidence 34455 9999986542 24677888884 56899999998753 67899999999975433
No 43
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.39 E-value=0.00059 Score=54.55 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=0.0
Q ss_pred eeEeccCCCCCCC---------CCCC--ceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSH---------ESGV--PIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~---------e~g~--~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||+...+.... ..++ .+..||. +..|..|+.+|++. +.+|++|+..|.
T Consensus 51 CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 51 CAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp --------------------------------------------------------------------
T ss_pred CeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 9999887653100 0111 2234554 77999999999966 679999999875
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.32 E-value=0.0014 Score=49.64 Aligned_cols=45 Identities=20% Similarity=0.514 Sum_probs=36.3
Q ss_pred eeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||+.... +++.+ ||. +..|..|+.+|++. +..|++|+..+...
T Consensus 18 C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 18 CVLCGGYFI-------DATTIIECL-----HSFCKTCIVRYLET--SKYCPICDVQVHKT 63 (108)
T ss_dssp CTTTSSBCS-------SEEEETTTC-----CEEEHHHHHHHHTS--CSBCTTTCCBSCSS
T ss_pred CccCChHHh-------CcCEeCCCC-----ChhhHHHHHHHHHh--CCcCcCCCcccccc
Confidence 999987654 36776 886 66899999999964 48999999998753
No 45
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.09 E-value=0.0016 Score=49.61 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=36.4
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|-||++..............+||. +..|..|+.+|++. +.+|++|+..+..
T Consensus 10 C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 10 CPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 60 (133)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTT--CSBCTTTCCBCTT
T ss_pred CcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHh--CCCCCCCCCcCcc
Confidence 999987654210001123788886 67999999999954 5699999998863
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.03 E-value=0.0037 Score=47.81 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=37.0
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|.||+.... +++.+||. +..+..|+.+|++.. ...|++|+..+..
T Consensus 25 ~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 25 SCQICEHILA-------DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp BCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCcHhc-------CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 3999987654 37778875 668999999999764 5689999999864
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.89 E-value=0.00093 Score=51.12 Aligned_cols=45 Identities=24% Similarity=0.558 Sum_probs=36.4
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
|-||+.... +++.+||. +..++.|+.+|++. ++..|++|+..+..
T Consensus 18 C~iC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 18 CGICMEILV-------EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CTTTCSBCS-------SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CccCCcccC-------ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 999987654 37888875 66999999999953 46899999999863
No 48
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.74 E-value=0.0057 Score=57.89 Aligned_cols=50 Identities=28% Similarity=0.681 Sum_probs=36.4
Q ss_pred eeEeccCCCCCCCCCCCceecccc---ccCccccccHHHHHHHHHHcCC---------cccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCS---CKDDLAAAHKQCAEAWFKIRGN---------KTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~---CkGsl~~VH~~CL~~W~k~kgn---------~~CEICk~~~~ 179 (248)
|-||+..... .+..-...|. |+ +..|..||.+||+...+ ..|+.|++...
T Consensus 311 CaICys~~l~----~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 311 CNICFAYRLD----GGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSSSCCSSCT----TCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CcccceeecC----CCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 9999987643 2333345563 55 78999999999986433 58999999775
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.64 E-value=0.0025 Score=48.55 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=35.7
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|-||+................+|. +..|..|+.+|++. +.+|++|+..+.
T Consensus 75 C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 75 CPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 124 (133)
T ss_dssp CTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred CCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHc--CCCCCCCCCcCC
Confidence 999987654210011123667774 77999999999976 469999999886
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.49 E-value=0.0082 Score=56.83 Aligned_cols=48 Identities=17% Similarity=0.454 Sum_probs=38.5
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeecc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNVA 182 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv~ 182 (248)
.|.||++... ++...||. +..|..|+.+|+.. ....|++|+..+....
T Consensus 334 ~C~ICle~~~-------~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 334 LCKICAENDK-------DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp BCTTTSSSBC-------CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEEE
T ss_pred CCCccCcCCC-------CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCce
Confidence 4999987653 47889997 44799999999974 5779999999987653
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.28 E-value=0.036 Score=40.84 Aligned_cols=63 Identities=6% Similarity=-0.060 Sum_probs=44.3
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec---cccchHHHHHhHHHhh
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV---AGATEIETAELSNEVN 197 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv---~~~~~~~~~E~wne~~ 197 (248)
..|-||+.-.. +++++||. +-.-+.|+++|+.. +.+|++|+..+..- |...-.+.++.|...+
T Consensus 15 ~~CpI~~~~m~-------dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 15 FRDPLMDTLMT-------DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred eECcccCchhc-------CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 35999987664 48999973 44779999999974 67999999988642 2221125666775543
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.21 E-value=0.0029 Score=45.42 Aligned_cols=41 Identities=29% Similarity=0.570 Sum_probs=34.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||+.... +++.+||. +. +...|+.+| ..|++|+..+..+
T Consensus 27 C~iC~~~~~-------~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 27 CKICMDRNI-------AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp CTTTSSSBC-------CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCCCCC-------CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 999987643 47888985 56 899999999 8999999998765
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.02 E-value=0.03 Score=42.75 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=43.9
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec---cccchHHHHHhHHHh
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV---AGATEIETAELSNEV 196 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv---~~~~~~~~~E~wne~ 196 (248)
..|-||+.-.. +|+++||. +-.-+.|+.+|+. ++.+|++|+..+..- |...-...++.|...
T Consensus 30 ~~CpI~~~~m~-------dPV~~~cG-----htf~r~~I~~~l~--~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 30 FRDPLMDTLMT-------DPVRLPSG-----TIMDRSIILRHLL--NSPTDPFNRQTLTESMLEPVPELKEQIQAWMRE 94 (100)
T ss_dssp TBCTTTCSBCS-------SEEEETTT-----EEEEHHHHHHHTT--SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHT
T ss_pred hCCcCccCccc-------CCeECCCC-----CEEchHHHHHHHH--cCCCCCCCCCCCChhhceECHHHHHHHHHHHHH
Confidence 45999987654 48999974 4478999999996 478999999998642 222112556667544
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.97 E-value=0.023 Score=43.24 Aligned_cols=64 Identities=11% Similarity=-0.042 Sum_probs=44.9
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec---cccchHHHHHhHHHhh
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV---AGATEIETAELSNEVN 197 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv---~~~~~~~~~E~wne~~ 197 (248)
..|-||+.-.. +|+++||. | +-.-+.|+++|+.. +.+|++|+..+..- |...-.+.++.|.+.+
T Consensus 23 ~~CpI~~~~m~-------dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 23 FLDPIMSTLMC-------DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp TBCTTTCSBCS-------SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred cCCcCcccccc-------CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 35999987654 48999976 1 33679999999964 67999999998742 2222225677776554
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.92 E-value=0.014 Score=40.85 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=33.9
Q ss_pred eeEeccCCCCCCCCCCCceec--cccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQL--GCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~--PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||++... +..+. ||. +. +=..|+.+|.+. +..|++|+..+..+
T Consensus 10 C~IC~~~~~-------~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 10 CSLCEKRPR-------DGNIIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQLV 57 (63)
T ss_dssp CTTTSSSBS-------CEEEEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCCEE
T ss_pred CcccCCcCC-------CeEEEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhhce
Confidence 999987643 24444 986 43 578999999854 57999999998755
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.89 E-value=0.0056 Score=47.15 Aligned_cols=41 Identities=27% Similarity=0.634 Sum_probs=34.2
Q ss_pred eeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
|.||+.... +++.+ ||. +..++.|+.+|++ ..|++|+..+.
T Consensus 25 C~IC~~~~~-------~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 25 CSRCTNILR-------EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp CSSSCSCCS-------SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred CCCCChHhh-------CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 999987654 36777 885 6789999999996 78999999985
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.72 E-value=0.0056 Score=41.62 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=33.0
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
..|.||+.... ++..+||. +.+++.|+.+ ....|++|+..+..
T Consensus 7 ~~C~IC~~~~~-------~p~~l~Cg-----H~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAK-------CPKLLPCL-----HTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCB-------CCSCSTTS-----CCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred CCceEeCCccC-------CeEEcCCC-----CcccHHHHcc-----CCCCCCcCCcEeec
Confidence 45999987654 36788975 4578889887 36789999998864
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.67 E-value=0.026 Score=45.72 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=36.3
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARN 180 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~n 180 (248)
.|-||+.... +++.+||. ..+.+.|+.+|++.++ .+|++|+..+..
T Consensus 20 ~C~IC~~~~~-------~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 20 ECPICLMALR-------EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp BCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCChhhc-------CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 3999987654 36777764 6689999999997654 499999998864
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.48 E-value=0.035 Score=47.11 Aligned_cols=63 Identities=10% Similarity=-0.014 Sum_probs=43.2
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec---cccchHHHHHhHHHh
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV---AGATEIETAELSNEV 196 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv---~~~~~~~~~E~wne~ 196 (248)
..|-||+.-.. +|++.||. +-.-+.|+.+|+...+. +|++|+..+..- |...-...++.|...
T Consensus 209 ~~c~i~~~~~~-------dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 209 LCGKISFELMR-------EPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLTQEQLIPNLAMKEVIDAFISE 274 (281)
T ss_dssp TBCTTTCSBCS-------SEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCCGGGCEECHHHHHHHHHHHTT
T ss_pred cCCcCcCCHhc-------CCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCchhcCcccHHHHHHHHHHHHH
Confidence 45999987654 48999974 44678999999986544 499999998632 222112455666533
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.19 E-value=0.022 Score=39.91 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=33.6
Q ss_pred eeEeccCCCCCCCCCCCceec--cccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQL--GCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~--PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||++... +.+.. ||. +. +=..|+.+|.+ .+..|++|+..+..+
T Consensus 11 C~IC~~~~~-------~~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 11 CVICQGRPK-------NGCIVHGKTG-----HLMACFTCAKKLKK--RNKPCPVCRQPIQMI 58 (64)
T ss_dssp CTTTSSSCS-------CEEEEETTEE-----EEEECHHHHHHHHH--TTCCCTTTCCCCCEE
T ss_pred CCcCCCCCC-------CEEEECCCCC-----ChhhHHHHHHHHHH--cCCcCCCcCcchhce
Confidence 999987643 34555 985 33 34799999995 467899999988755
No 61
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.90 E-value=0.011 Score=47.75 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=34.7
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccce
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIA 178 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~ 178 (248)
.|-||+.... +++.++|. +..++.|+.+|++ ++...|++|+...
T Consensus 33 ~C~IC~~~~~-------~pv~~~Cg-----H~FC~~Ci~~~~~-~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 33 LCSACRNVLR-------RPFQAQCG-----HRYCSFCLASILS-SGPQNCAACVHEG 76 (141)
T ss_dssp BCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHGG-GSCEECHHHHHTT
T ss_pred CCCCCChhhc-------CcEECCCC-----CccCHHHHHHHHh-cCCCCCCCCCCcc
Confidence 3999987654 36787775 6689999999996 3557999999864
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.58 E-value=0.075 Score=37.74 Aligned_cols=45 Identities=16% Similarity=0.387 Sum_probs=33.6
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceeecccc
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNVAGA 184 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv~~~ 184 (248)
.|.||+.... +.+.+||. +. +-..|+.+ ...|++|+..+..+..+
T Consensus 17 ~C~IC~~~~~-------~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~~~i 62 (68)
T 2ea5_A 17 DCVVCQNGTV-------NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQESFAL 62 (68)
T ss_dssp CCSSSSSSCC-------CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCEECC
T ss_pred CCCCcCcCCC-------CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhceEEe
Confidence 4999987543 47889997 33 56688883 47999999998866443
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.27 E-value=0.1 Score=38.92 Aligned_cols=65 Identities=14% Similarity=0.278 Sum_probs=43.4
Q ss_pred ceeEeccCCCCCCCCCCCceecc-ccccCccccccHHHHHHHHHHc----CCccccc--cccc-e--eec-cccchHHHH
Q 025800 122 ICRICHLCLESNSHESGVPIQLG-CSCKDDLAAAHKQCAEAWFKIR----GNKTCEI--CNSI-A--RNV-AGATEIETA 190 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~P-C~CkGsl~~VH~~CL~~W~k~k----gn~~CEI--Ck~~-~--~nv-~~~~~~~~~ 190 (248)
.|-||+.-.. +|+++| |. +-.-+.|+.+|+... +..+|++ |... + ..+ |...-...+
T Consensus 9 ~CPI~~~~~~-------dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I 76 (94)
T 2yu4_A 9 TCPITKEEMK-------KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAI 76 (94)
T ss_dssp BCTTTCSBCS-------SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHH
T ss_pred ECcCcCchhc-------CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHH
Confidence 4999987654 488886 75 457799999999764 4679999 9855 3 223 332222566
Q ss_pred HhHHHhhh
Q 025800 191 ELSNEVNN 198 (248)
Q Consensus 191 E~wne~~~ 198 (248)
+.|.+.+.
T Consensus 77 ~~~~~~~~ 84 (94)
T 2yu4_A 77 ENHNKKRH 84 (94)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhc
Confidence 77765543
No 64
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.19 E-value=0.032 Score=49.06 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=37.2
Q ss_pred CceeEeccCCCCCCCCCCCceecccc-ccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCS-CKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~-CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
..|-||+.-...+ .-|. |. ...|..|+.+|++.+++..|+.|+..+..-
T Consensus 181 ~~C~iC~~iv~~g---------~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQG---------QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSC---------EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCC---------cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4599998655421 2232 43 669999999999988889999999988754
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.03 E-value=0.049 Score=38.78 Aligned_cols=41 Identities=29% Similarity=0.574 Sum_probs=32.0
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||+.... +++.+||. +. +...|+.+ ...|++|+..+..+
T Consensus 28 C~IC~~~~~-------~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 28 CKICMDRNI-------AIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITFK 69 (75)
T ss_dssp CSSSCSSCC-------CBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCCC
T ss_pred CCcCCCCCC-------CEEEecCC-----CHHHHHHHhhC------CCCCccCCceecCc
Confidence 999987643 47788985 44 78899964 37999999998764
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=92.95 E-value=0.084 Score=44.89 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=44.0
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec---cccchHHHHHhHHHh
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV---AGATEIETAELSNEV 196 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv---~~~~~~~~~E~wne~ 196 (248)
.|-||+.-.. +|+++||. +-.=+.|+.+|+...+. +|++|+..+..- |...-...++.|...
T Consensus 108 ~CPI~~elm~-------DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 108 CGKISFELMR-------EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAFIQE 172 (179)
T ss_dssp BCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred cccCccccCC-------CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHHHHH
Confidence 4999987654 48999974 44779999999987554 799999998642 322222566677544
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=88.70 E-value=0.065 Score=49.53 Aligned_cols=43 Identities=23% Similarity=0.628 Sum_probs=34.6
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
..|.||+.... +++.+||. +. +...|+.+| ..|++|+..+..+
T Consensus 296 ~~C~IC~~~~~-------~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEV-------SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBC-------CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCccCCcCC-------ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 34999987653 47888986 45 788999988 7999999998755
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.87 E-value=0.45 Score=34.93 Aligned_cols=46 Identities=15% Similarity=0.407 Sum_probs=33.5
Q ss_pred eeEeccCCCCCCCCCCCcee-ccccccCccccccHHHHHHHHHHc---C---Cccccc--cccce
Q 025800 123 CRICHLCLESNSHESGVPIQ-LGCSCKDDLAAAHKQCAEAWFKIR---G---NKTCEI--CNSIA 178 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li-~PC~CkGsl~~VH~~CL~~W~k~k---g---n~~CEI--Ck~~~ 178 (248)
|-||++.... ...+. .||. +..-+.|+.+++..+ + ...|+. |+..+
T Consensus 8 C~IC~~~~~~-----~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 8 CKLCLGEYPV-----EQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSSSCCCCBG-----GGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcccCccccc-----ccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 9999976543 12233 4786 568899999999764 2 469999 99984
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=86.71 E-value=0.54 Score=42.59 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=39.9
Q ss_pred cCCCCCCceeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCccccc--ccccee
Q 025800 115 EGERDCRICRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEI--CNSIAR 179 (248)
Q Consensus 115 eeE~~~~~CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEI--Ck~~~~ 179 (248)
+++.....|-||+.-.. +|+.. .|. +-.=+.|+.+|+...+...|++ |+..+.
T Consensus 176 ~~~~~el~CPIcl~~f~-------DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 176 EGGKIELTCPITCKPYE-------APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSSBCCSBCTTTSSBCS-------SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred cCCceeeECcCccCccc-------CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34455567999987654 36764 664 4577899999998777789999 999875
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=85.14 E-value=0.26 Score=35.78 Aligned_cols=41 Identities=22% Similarity=0.511 Sum_probs=31.9
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAA-AHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~-VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
|.||+.... +++.+||. +. +=..|+.+| ..|++|+..+..+
T Consensus 21 C~IC~~~~~-------~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 21 CMVCCEEEI-------NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp CTTTSSSBC-------CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred eEEeCcccC-------cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 999987643 47889986 33 457899877 3999999998765
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=79.54 E-value=1.1 Score=31.19 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=32.6
Q ss_pred ceeEeccCCCCCCCCCCCceec-cccccCccccccHHHHHHHHHHcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQL-GCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~-PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~ 179 (248)
+|-||++... +++++ +|. .-.=+.|+++|++.. .+|++++....
T Consensus 5 ~CpIs~~~m~-------dPV~~~~sG-----~~yer~~I~~~l~~~--~~cP~t~~~L~ 49 (61)
T 2bay_A 5 LCAISGKVPR-------RPVLSPKSR-----TIFEKSLLEQYVKDT--GNDPITNEPLS 49 (61)
T ss_dssp CCTTTCSCCS-------SEEEETTTT-----EEEEHHHHHHHHHHH--SBCTTTCCBCC
T ss_pred EecCCCCCCC-------CCEEeCCCC-----cEEcHHHHHHHHHhC--CCCcCCcCCCC
Confidence 4888877654 47777 543 447789999999864 35999998875
No 72
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.49 E-value=0.39 Score=36.20 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=30.4
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSI 177 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~ 177 (248)
|.||...... ..+.|+ -| .+--..+|..|+.-=..-++.+.|..|...
T Consensus 28 C~vC~~~~s~----~~~~ll-~C--D~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 28 CSICMDGESQ----NSNVIL-FC--DMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CSSCCSSSSC----SEEEEE-EC--SSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCcCCCCCCC----CCCCEE-EC--CCCCchhhcccCCCCccCCCceECccccCc
Confidence 9999876532 122333 33 233467899999743345678899999654
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=67.08 E-value=2.1 Score=30.62 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH--cCCcccccccccee
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI--RGNKTCEICNSIAR 179 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~--kgn~~CEICk~~~~ 179 (248)
|.||... ++ |+. |.+=-+..|..||.-.+.. ++.+.|..|...-.
T Consensus 15 C~vC~~~--------~~-ll~---Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 15 CGVCGDG--------TD-VLR---CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTTSCC--------TT-CEE---CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred cCCCCCC--------Ce-EEE---CCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 9999743 22 332 3344588999999877753 57899999986543
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=54.02 E-value=13 Score=28.80 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=36.5
Q ss_pred CCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCccccccccceeec
Q 025800 120 CRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNSIARNV 181 (248)
Q Consensus 120 ~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~~~~nv 181 (248)
..+|.||-+..... +.|++++ -|+=- ---|=+.|++-=++ .++..|..||+.|+-.
T Consensus 16 ~qiCqiCGD~VG~~--~~Ge~FV-AC~eC--~FPvCrpCyEYErk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 16 GQFCEICGDQIGLT--VEGDLFV-ACNEC--GFPACRPCYEYERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SCBCSSSCCBCCBC--SSSSBCC-SCSSS--CCCCCHHHHHHHHH-TSCSSCTTTCCCCCCC
T ss_pred CCccccccCccccC--CCCCEEE-eeecc--CChhhHHHHHHHHh-ccCccccccCCccccc
Confidence 35699997664432 3455544 33211 12378899886554 5899999999999853
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=51.31 E-value=3.2 Score=30.03 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=29.8
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHHcCCcccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKIRGNKTCEICNS 176 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~kgn~~CEICk~ 176 (248)
|.||...... ..+.|+. |.+=-..+|..|+.-=..-++.+.|..|..
T Consensus 19 C~vC~~~~s~----~~~~ll~---CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 19 CSICMDGESQ----NSNVILF---CDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSSCCCCCC----SSSCEEE---CSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCC----CCCCEEE---CCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 9999876532 1233433 233346899999974334467888988864
No 76
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=34.87 E-value=19 Score=27.50 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=22.1
Q ss_pred CceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHH
Q 025800 121 RICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEA 161 (248)
Q Consensus 121 ~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~ 161 (248)
++|.+|+..........++.|+. |.+=-+..|..||..
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLKF 43 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHTC
T ss_pred ccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhcC
Confidence 35999987754321112234553 333347789999964
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=33.88 E-value=11 Score=26.05 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=28.7
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHH--HcCCccccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFK--IRGNKTCEICNSI 177 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k--~kgn~~CEICk~~ 177 (248)
|.||.... .|+. |.+=-+..|..||..=+. .++...|..|...
T Consensus 14 C~vC~~~g---------~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 14 CEVCQQGG---------EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CTTTSCCS---------SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CccCCCCC---------cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 99997632 2322 334447899999986432 3577899999753
No 78
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.11 E-value=3.1 Score=31.06 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=33.3
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHH------HcCCcccccccccee
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFK------IRGNKTCEICNSIAR 179 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k------~kgn~~CEICk~~~~ 179 (248)
.|.||...... ..+.|+. |.+=-+..|+.|+.-=+. -++.+.|..|.....
T Consensus 18 ~C~vC~~~~~~----~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 18 ACVVCRQMTVA----SGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SCSSSCCCCCC----TTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred cCCCCCCCCCC----CCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 49999876542 2244554 333347789999975543 357889999976554
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=32.68 E-value=8.2 Score=27.34 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=29.8
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH--cCCccccccccce
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI--RGNKTCEICNSIA 178 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~--kgn~~CEICk~~~ 178 (248)
|.||..... +..++. |.+=-.+.|..|+.--... .+...|+.|....
T Consensus 21 C~~C~~~~~------~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 21 CPGCNKPDD------GSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp BTTTTBCCS------SCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCCCCCC------CCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 999976542 223443 3344489999999643322 2568899997654
No 80
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=27.40 E-value=18 Score=21.56 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHh
Q 025800 227 LLACMVFAFVISWL 240 (248)
Q Consensus 227 LlacmVfaFVi~Wl 240 (248)
+++.++.+|++.|+
T Consensus 7 ~l~~vv~~F~icW~ 20 (33)
T 2ki9_A 7 TLGLVLAVLLICWF 20 (33)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred hHHHHHHHHHHHHh
Confidence 34567788998886
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.15 E-value=11 Score=28.58 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=18.8
Q ss_pred ccccHHHHHHHHHH--cCCccccccccce
Q 025800 152 AAAHKQCAEAWFKI--RGNKTCEICNSIA 178 (248)
Q Consensus 152 ~~VH~~CL~~W~k~--kgn~~CEICk~~~ 178 (248)
.+.|..|+. +.. ++...|+.|...-
T Consensus 60 ~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 60 EWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCEecccCC--cCcCCCCCEECcCccCcC
Confidence 689999997 332 4678999997643
No 82
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.62 E-value=21 Score=18.31 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=10.4
Q ss_pred cccccccceeecc
Q 025800 170 TCEICNSIARNVA 182 (248)
Q Consensus 170 ~CEICk~~~~nv~ 182 (248)
.|++|+..|....
T Consensus 3 ~C~~C~k~f~~~~ 15 (27)
T 1znf_A 3 KCGLCERSFVEKS 15 (27)
T ss_dssp BCSSSCCBCSSHH
T ss_pred cCCCCCCcCCCHH
Confidence 6999999997543
No 83
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=24.58 E-value=24 Score=24.14 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=29.1
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHH-----HHcCCccccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWF-----KIRGNKTCEICNSI 177 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~-----k~kgn~~CEICk~~ 177 (248)
|.||....... .+.|+. |.+=-..+|+.|+.-=+ ..++.+.|..|...
T Consensus 9 C~vC~~~~~~~----~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 9 CTICQEEYSEA----PNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp BSSSCCCCCBT----TBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCC----CCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 99998764321 223332 23334678999987432 14577888888643
No 84
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.54 E-value=16 Score=26.18 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=18.7
Q ss_pred ccccHHHHHHHHHH--cCCccccccccce
Q 025800 152 AAAHKQCAEAWFKI--RGNKTCEICNSIA 178 (248)
Q Consensus 152 ~~VH~~CL~~W~k~--kgn~~CEICk~~~ 178 (248)
.+.|..|+. +.. ++...|+.|...-
T Consensus 40 ~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 40 EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 689999998 432 3678999997643
No 85
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.31 E-value=22 Score=18.37 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=11.6
Q ss_pred ccccccccceeeccc
Q 025800 169 KTCEICNSIARNVAG 183 (248)
Q Consensus 169 ~~CEICk~~~~nv~~ 183 (248)
-.|++|+..|.....
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 3 FVCEVCTRAFARQEH 17 (29)
T ss_dssp CBCTTTCCBCSSHHH
T ss_pred eECCCCCcccCCHHH
Confidence 479999999986544
No 86
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.03 E-value=22 Score=18.41 Aligned_cols=15 Identities=20% Similarity=0.685 Sum_probs=11.6
Q ss_pred ccccccccceeeccc
Q 025800 169 KTCEICNSIARNVAG 183 (248)
Q Consensus 169 ~~CEICk~~~~nv~~ 183 (248)
-.|++|+..|.....
T Consensus 4 ~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 4 FSCSLCPQRSRDFSA 18 (27)
T ss_dssp EECSSSSCEESSHHH
T ss_pred ccCCCcChhhCCHHH
Confidence 479999999985543
No 87
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.79 E-value=16 Score=18.79 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=11.1
Q ss_pred cccccccceeeccc
Q 025800 170 TCEICNSIARNVAG 183 (248)
Q Consensus 170 ~CEICk~~~~nv~~ 183 (248)
.|++|+..|.....
T Consensus 4 ~C~~C~k~f~~~~~ 17 (26)
T 2lvu_A 4 VCERCGKRFVQSSQ 17 (26)
Confidence 69999999976544
No 88
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.43 E-value=18 Score=19.01 Aligned_cols=15 Identities=13% Similarity=0.488 Sum_probs=11.8
Q ss_pred cccccccceeecccc
Q 025800 170 TCEICNSIARNVAGA 184 (248)
Q Consensus 170 ~CEICk~~~~nv~~~ 184 (248)
.|++|+..|.....+
T Consensus 4 ~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 4 QCVMCGKAFTQASSL 18 (29)
Confidence 699999999865543
No 89
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.75 E-value=25 Score=18.22 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.1
Q ss_pred ccccccccceeecc
Q 025800 169 KTCEICNSIARNVA 182 (248)
Q Consensus 169 ~~CEICk~~~~nv~ 182 (248)
-.|++|+..|....
T Consensus 4 ~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 4 YSCSVCGKRFSLKH 17 (28)
T ss_dssp EECSSSCCEESCHH
T ss_pred ccCCCCCcccCCHH
Confidence 46999999998543
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=22.39 E-value=8.6 Score=32.30 Aligned_cols=44 Identities=20% Similarity=0.470 Sum_probs=30.3
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHH--HcCCccccccccce
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFK--IRGNKTCEICNSIA 178 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k--~kgn~~CEICk~~~ 178 (248)
|.+|..+. .|+. |.+--+..|..||..-+. .++.+.|..|...-
T Consensus 10 C~~C~~~g---------~ll~---Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 10 CAVCQNGG---------DLLC---CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp BTTTCCCE---------EEEE---CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCC---------ceEE---cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 99997532 2332 444558899999976553 35789999998654
No 91
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.60 E-value=27 Score=18.06 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=11.6
Q ss_pred ccccccccceeeccc
Q 025800 169 KTCEICNSIARNVAG 183 (248)
Q Consensus 169 ~~CEICk~~~~nv~~ 183 (248)
-.|++|+..|.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 3 FACPECPKRFMRSDH 17 (29)
T ss_dssp EECSSSSCEESCSHH
T ss_pred ccCCCCCchhCCHHH
Confidence 369999999976544
No 92
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.04 E-value=20 Score=18.75 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=12.2
Q ss_pred ccccccccceeecccc
Q 025800 169 KTCEICNSIARNVAGA 184 (248)
Q Consensus 169 ~~CEICk~~~~nv~~~ 184 (248)
-.|++|+..|.....+
T Consensus 4 ~~C~~C~k~f~~~~~l 19 (30)
T 2lvr_A 4 YVCIHCQRQFADPGAL 19 (30)
Confidence 3799999999866544
No 93
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.31 E-value=27 Score=17.89 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.5
Q ss_pred ccccccccceeeccc
Q 025800 169 KTCEICNSIARNVAG 183 (248)
Q Consensus 169 ~~CEICk~~~~nv~~ 183 (248)
-.|++|+..|.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (29)
T 2m0f_A 3 LKCRECGKQFTTSGN 17 (29)
T ss_dssp EECTTTSCEESCHHH
T ss_pred ccCCCCCCccCChhH
Confidence 469999999975544
No 94
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.22 E-value=27 Score=17.97 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=11.6
Q ss_pred ccccccccceeeccc
Q 025800 169 KTCEICNSIARNVAG 183 (248)
Q Consensus 169 ~~CEICk~~~~nv~~ 183 (248)
-.|++|+..|.....
T Consensus 4 ~~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 4 YQCDYCGRSFSDPTS 18 (30)
T ss_dssp EECTTTCCEESCHHH
T ss_pred ccCCCCCcccCCHHH
Confidence 479999999985544
No 95
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=21.21 E-value=66 Score=22.44 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=21.2
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHhhcccC
Q 025800 216 SIWHGHRFLNFLLACMVFAFVISWLFHFNM 245 (248)
Q Consensus 216 ~fW~~~~flnfLlacmVfaFVi~WlFh~~~ 245 (248)
+.|.-.-.-.-|.+..+|.|++..+.||=+
T Consensus 3 kIWl~fDPrr~Lva~~~fl~vlAl~IHfil 32 (52)
T 1xrd_A 3 RIWQLFDPRQALVGLATFLFVLALLIHFIL 32 (52)
T ss_dssp GGGGTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEchhHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555667788888888888888743
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.03 E-value=16 Score=23.88 Aligned_cols=45 Identities=24% Similarity=0.495 Sum_probs=26.8
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHH--HHcCCcccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWF--KIRGNKTCEICNS 176 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~--k~kgn~~CEICk~ 176 (248)
|.||....+. +.|+. |.+=-+..|..||.-=+ .-++...|..|..
T Consensus 3 C~vC~~~~~~------~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGED------DKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCC------SCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC------CCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 8899776432 12322 22334788999995311 1246788988864
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=7 Score=29.37 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=28.7
Q ss_pred ceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHH--HHHcCCccccccccce
Q 025800 122 ICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAW--FKIRGNKTCEICNSIA 178 (248)
Q Consensus 122 ~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W--~k~kgn~~CEICk~~~ 178 (248)
.|.||...... +.| +-| .+=-+..|..||.-= -.-++.+.|..|....
T Consensus 18 ~C~vC~~~~~~------~~l-l~C--D~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 18 ICQVCSRGDED------DKL-LFC--DGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCSSSCCSGGG------GGC-EEC--TTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCccCCCcCCC------CCE-EEc--CCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 39999876532 122 222 222367999999621 1235678899996543
No 98
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=20.36 E-value=80 Score=25.35 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=29.0
Q ss_pred eeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHH------HHH---cCCcccccccc
Q 025800 123 CRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAW------FKI---RGNKTCEICNS 176 (248)
Q Consensus 123 CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W------~k~---kgn~~CEICk~ 176 (248)
||||..+. .|+ - |.+--+..|..||.+= -++ ++.+.|-+|..
T Consensus 60 C~vC~dGG---------~Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 60 CRWCAEGG---------NLI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTTCCCS---------EEE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CeecCCCC---------eeE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 99997643 232 2 3444588999999974 333 57899999944
No 99
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=20.10 E-value=21 Score=27.72 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=27.9
Q ss_pred cCCCCCCceeEeccCCCCCCCCCCCceeccccccCccccccHHHHHHHHHH--cCCcc-----ccccccce
Q 025800 115 EGERDCRICRICHLCLESNSHESGVPIQLGCSCKDDLAAAHKQCAEAWFKI--RGNKT-----CEICNSIA 178 (248)
Q Consensus 115 eeE~~~~~CRIC~~~~e~~~~e~g~~li~PC~CkGsl~~VH~~CL~~W~k~--kgn~~-----CEICk~~~ 178 (248)
+++.. |.+|... | -++-|..++--+..|..||. +.. ++... |.+|+...
T Consensus 13 ~~~~~---C~~C~~~--------G--~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~ 68 (107)
T 4gne_A 13 MHEDY---CFQCGDG--------G--ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAA 68 (107)
T ss_dssp SSCSS---CTTTCCC--------S--EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBC
T ss_pred CCCCC---CCcCCCC--------C--cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCC
Confidence 44555 9999732 2 24556522334689999997 432 34443 44565544
No 100
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.06 E-value=29 Score=17.85 Aligned_cols=15 Identities=13% Similarity=0.463 Sum_probs=11.7
Q ss_pred ccccccccceeeccc
Q 025800 169 KTCEICNSIARNVAG 183 (248)
Q Consensus 169 ~~CEICk~~~~nv~~ 183 (248)
-.|++|+..|.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 3 YQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCSSSSCCCSCSHH
T ss_pred ccCCCCCCccCCHHH
Confidence 469999999986544
Done!