BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025801
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
SV=2
Length = 371
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 74 PKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS--WINLTF 131
P+P EI ++ E+ N V+LIG V P++ + GK A T ++ R SA+ +S WI + F
Sbjct: 86 PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQR-SASDSSGFWIPIIF 144
Query: 132 WDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSY 191
+LA A+++V K QI++SG+L D Q +V+VQ LNF++ SPS S +
Sbjct: 145 EGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPSPF 204
>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2
SV=1
Length = 360
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 26/180 (14%)
Query: 31 SLSPSQNPLTKQAWFISHRQPLKLRLRCSVDCK------DHQYSSQVSYPKPPEIPWDKE 84
S+ PS N +++W +S +Q L S + S +P+P E+P+ +
Sbjct: 11 SIRPSLNSTARKSWVLSSQQFLSTSSTESSSRTRGGGGGNRAEKSSEEWPRPMEVPYQPK 70
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLA--------VRKSATQTSWINLTFWDELA 136
+ N++ LIG V P++ GK A T ++ ++ WI + F +LA
Sbjct: 71 IANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDLA 130
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTY------------YKVVVQQLNFVERS 184
H A+ +++K +++I+G+++ DV++SG Q + ++V+V+ L+++E S
Sbjct: 131 HTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQVMVRDLHYIEGS 190
>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=OSB3 PE=2 SV=1
Length = 440
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 76 PPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDE 134
P +I + E++N ++LIG V P++ GK A T ++ R + ++ WI + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 135 LAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185
LA +A QHV+K +I++SG+L D Q+ +V+VQ LNFV+ ++
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAAT 181
>sp|P66849|SSB_NEIMB Single-stranded DNA-binding protein OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ssb PE=3 SV=1
Length = 174
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E +++P+G+ + +A ++ +T W N+T + +LA +
Sbjct: 4 NKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEI 63
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A Q+++KG +Y+ GR+ S + DG ++T Y +V ++ +
Sbjct: 64 AGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKML 106
>sp|P66848|SSB_NEIMA Single-stranded DNA-binding protein OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ssb PE=3
SV=1
Length = 174
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E +++P+G+ + +A ++ +T W N+T + +LA +
Sbjct: 4 NKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEI 63
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A Q+++KG +Y+ GR+ S + DG ++T Y +V ++ +
Sbjct: 64 AGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKML 106
>sp|Q8Y2B4|SSB_RALSO Single-stranded DNA-binding protein OS=Ralstonia solanacearum
(strain GMI1000) GN=ssb PE=3 SV=1
Length = 178
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 10/104 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV-----RKSATQ----TSWINLTFWDELAH 137
N V ++G +G ET+++PSG + R+A K++ + T W + F+ LA
Sbjct: 5 NKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAE 64
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
+A ++++KG Q+Y+ GRL + E DGQ+Q ++V +Q+ +
Sbjct: 65 IAGEYLKKGSQVYVEGRLKTRQWEK-DGQKQYSTEIVAEQMQML 107
>sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain
CMCP6) GN=ssb PE=3 SV=1
Length = 179
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++PSG +A W A + +T W +T + +LA
Sbjct: 7 NKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + + +GQ + +VVVQ N +
Sbjct: 67 VAGEYLRKGSQVYIEGQLQTRKWQDQNGQDRYSTEVVVQGYNGI 110
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V LIG +G E +++PSG +A W A + +T W +T + +LA
Sbjct: 7 NKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + + GQ + +VVVQ N +
Sbjct: 67 VAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGI 110
>sp|P59932|SSB_RHOBA Single-stranded DNA-binding protein OS=Rhodopirellula baltica
(strain SH1) GN=ssb PE=3 SV=1
Length = 169
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQTSWIN------LTFWDELAHV 138
N V L+G + IE ++LPSG +A +AV ++ A+ W+ +T + A V
Sbjct: 5 NRVMLMGNLTRDIELRYLPSGMAVAEFSIAVNEKRKASDGQWVEDVSFFEITLFGRTAEV 64
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
AS+++ KG I++ GRL D E DGQ+++ KV+ +++ +
Sbjct: 65 ASEYLSKGSPIFVEGRLKQDTWEK-DGQKRSKVKVIGERMQMI 106
>sp|P59933|SSB_WOLSU Single-stranded DNA-binding protein OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=ssb PE=3 SV=1
Length = 162
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK--------SATQTSWINLTFWDELA 136
+ N V L+G + +E ++LPSG LA +A + + ++++ + A
Sbjct: 1 MYNKVILVGNLTRDVELRYLPSGSALAKIGIATNRRFKKQDGSQGDEVCFVDVNLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYDSE 194
+A+Q+++KG +I I GRLV + GQ+++ + V + L ++ S Y+ E
Sbjct: 61 EIANQYLKKGSKILIEGRLVLESWTDQSGQKRSKHSVTAESLQMLDSKGASQGGYEGE 118
>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ssb PE=3 SV=1
Length = 176
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + +T W + + +LA
Sbjct: 7 NKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+Y+ G+L + + GQ + +VVVQ N V
Sbjct: 67 VAGEYLRKGSQVYVEGQLQTRKWQDQSGQDRYSTEVVVQGFNGV 110
>sp|P40947|SSB_PSEAE Single-stranded DNA-binding protein OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ssb PE=1 SV=3
Length = 165
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVL---------AWTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G VG ET+++P+G + +W + +T W + F+ LA
Sbjct: 6 NKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
+A +++ KG Q+Y+ G L + + DGQ + ++VV
Sbjct: 66 IAGEYLRKGSQVYVEGSLRTRKWQGQDGQDRYTTEIVV 103
>sp|P59927|SSB_CUPNH Single-stranded DNA-binding protein OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ssb PE=3
SV=1
Length = 188
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQ-------TSWINLTFWDELAH 137
N V L+G +G E +++PSG +A R+A R Q T W ++ + +LA
Sbjct: 5 NKVILVGNLGADPEVRYMPSGDAVANLRIATTDRYKDKQSGEMKEATEWHRVSMFGKLAE 64
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV-ERSSPSMSSYDSESN 196
+A Q++ KG +YI GR+ + + GQ + ++V Q+ + R S DS ++
Sbjct: 65 IAGQYLRKGSSVYIEGRIRTRKWQDQSGQDKYSTEIVADQMQMLGGRGGASDGDSDSGTD 124
>sp|Q8DIU1|SSB_THEEB Single-stranded DNA-binding protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=ssb PE=3 SV=1
Length = 120
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--TQTSWINLTFWDELAHVASQHVE 144
N VHL+G VG E ++ SG V LAV + + Q W NL W + A VA+ +V
Sbjct: 4 NVVHLVGRVGGDPEVRYFESGSVKCRLTLAVNRPSKDDQPDWFNLEIWGKTAQVAADYVR 63
Query: 145 KGQQIYISGRLVSD 158
KG + I G L D
Sbjct: 64 KGTLLGIKGSLKFD 77
>sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb
PE=3 SV=2
Length = 178
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Escherichia coli (strain
K12) GN=ssb PE=1 SV=2
Length = 178
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0AGE1|SSB_ECOL6 Single-stranded DNA-binding protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ssb PE=3 SV=2
Length = 178
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0AGE2|SSB_ECO57 Single-stranded DNA-binding protein OS=Escherichia coli O157:H7
GN=ssb PE=3 SV=2
Length = 178
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0A2F6|SSB_SALTY Single-stranded DNA-binding protein OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb PE=3 SV=2
Length = 176
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++PSG +A LA +S QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + GQ++ ++ V Q+ V
Sbjct: 67 VAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEINVPQIGGV 110
>sp|P0A2F7|SSB_SALTI Single-stranded DNA-binding protein OS=Salmonella typhi GN=ssb PE=3
SV=2
Length = 176
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++PSG +A LA +S QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + GQ++ ++ V Q+ V
Sbjct: 67 VAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEINVPQIGGV 110
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia
brevipalpis GN=ssb PE=3 SV=2
Length = 163
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V LIG +G E +++P+G + W +S +T W + + +LA
Sbjct: 7 NKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTEWHRVILFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYD 192
VA ++++KG Q+YI G L + + +GQ + ++VV +N + + +SYD
Sbjct: 67 VAGEYLKKGSQVYIEGNLQTRKWQDQNGQDRYITEIVV-GINGCMQMLGNRASYD 120
>sp|Q55499|SSB_SYNY3 Single-stranded DNA-binding protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ssb PE=3 SV=1
Length = 121
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS----WINLTFWDELAHVASQH 142
N++HL+G G E K+ SG V+ LAV + ++ W +L W + A +A +
Sbjct: 4 NSIHLVGRAGRDPEVKYFESGNVVCNFTLAVNRRTSKKDEPPDWFDLEIWGKTAEIAGNY 63
Query: 143 VEKGQQIYISGRLVSDVVESGD-GQQQTYYKVVVQQLNFV----ERSSPSMSSYDSE 194
V+KG I I G L D E + G ++ + V L+ + + + +M++Y E
Sbjct: 64 VKKGSLIGIQGSLKFDHWEDRNSGTPRSKPVIRVNNLDLLGSKRDNAEATMNNYPEE 120
>sp|O69302|SSB_CAMJE Single-stranded DNA-binding protein OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=ssb PE=3 SV=2
Length = 183
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT-------QTSWINLTFWDELAH 137
+ N V L+G + IE ++ SG + + +AV + T +T +I+++F+ A
Sbjct: 1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAE 60
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185
VA+Q++ KG ++ I GRL + +GQ ++ + + V+ + + S+
Sbjct: 61 VANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENMEMLGNSN 108
>sp|P0A4K0|SSB1_NOSS1 Single-stranded DNA-binding protein 1 OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ssb1 PE=3 SV=1
Length = 119
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQTSWINLTFWDELAHVASQHVE 144
N V L+G VGT + K+ SG V LAV R + W L WD+ A VA +V
Sbjct: 4 NIVTLVGRVGTDPDIKYFESGSVKCRLTLAVNRRSKNDKPDWFTLELWDKTAEVAGNYVR 63
Query: 145 KGQQIYISGRLVSD 158
KG I + G L D
Sbjct: 64 KGSLIGVKGSLKFD 77
>sp|P0A4K1|SSB1_ANAVA Single-stranded DNA-binding protein 1 OS=Anabaena variabilis
GN=ssb1 PE=3 SV=1
Length = 119
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQTSWINLTFWDELAHVASQHVE 144
N V L+G VGT + K+ SG V LAV R + W L WD+ A VA +V
Sbjct: 4 NIVTLVGRVGTDPDIKYFESGSVKCRLTLAVNRRSKNDKPDWFTLELWDKTAEVAGNYVR 63
Query: 145 KGQQIYISGRLVSD 158
KG I + G L D
Sbjct: 64 KGSLIGVKGSLKFD 77
>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb
PE=1 SV=2
Length = 174
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V LIG +G E +++PSG +A LA +S +T W + + +LA
Sbjct: 7 NKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
+A +++ KG Q+YI G+L + + GQ + +VVV
Sbjct: 67 IAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVV 104
>sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb
PE=1 SV=2
Length = 176
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + +T W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VA +++ KG Q+YI G L + + GQ + ++VV
Sbjct: 67 VAGEYLRKGSQVYIEGSLQTRKWQDQSGQDRYTTEIVV 104
>sp|Q9XJG4|SSB_BPP1 Single-stranded DNA-binding protein OS=Enterobacteria phage P1
GN=ssb PE=3 SV=1
Length = 162
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V LIG +G E +++P+G + +A +S QT W + + +LA
Sbjct: 7 NKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTEWHKVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
+AS+++ KG Q+YI G+L
Sbjct: 67 IASEYLRKGSQVYIEGKL 84
>sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersinia pestis GN=ssb PE=3
SV=1
Length = 182
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA +S +T W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VA +++ KG Q+YI G L + + GQ++ +VVV
Sbjct: 67 VAGEYLRKGSQVYIEGALQTRKWQDQSGQERYTTEVVV 104
>sp|P77953|SSB_SHEHA Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb
PE=3 SV=1
Length = 226
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V L+G +G E +++P+G +A +A +S +T W N+ + LA +
Sbjct: 7 NKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQPQERTEWHNIVMYRRLAEI 66
Query: 139 ASQHVEKGQQIYISGRL 155
A ++++KG +IYI G+L
Sbjct: 67 AGEYLKKGSKIYIEGKL 83
>sp|P28043|SSB2_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 179
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W K QT W + + +LA
Sbjct: 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGKMREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|Q82S98|SSB_NITEU Single-stranded DNA-binding protein OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=ssb PE=3 SV=1
Length = 149
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E +++PSG +A +A + +T W + + + A +
Sbjct: 5 NKVMLIGNLGRDPEIRYMPSGDAMANLNIATTDTWKDKGGEKQERTEWHRVVMFGKQAEI 64
Query: 139 ASQHVEKGQQIYISGRL 155
A ++++KG QIYI GRL
Sbjct: 65 AGEYLKKGSQIYIEGRL 81
>sp|Q87DQ5|SSB_XYLFT Single-stranded DNA-binding protein OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=ssb PE=3 SV=1
Length = 164
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRKSAT-----QTSWINLTFWDELAHV 138
N V L+G +G + K+ G + LA VRK +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q YI G + D DGQ++ ++V ++ +
Sbjct: 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQML 108
>sp|Q8PIJ2|SSB_XANAC Single-stranded DNA-binding protein OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=ssb PE=3 SV=1
Length = 180
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRKSAT-----QTSWINLTFWDELAHV 138
N V L+G +G +TK+ +G + LA +RK +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q+Y+ G L D DG ++ +V ++ +
Sbjct: 66 AGEYLRKGSQVYVEGELRYDKYTGQDGVEKYSTDIVANEMQML 108
>sp|P59930|SSB_HAEDU Single-stranded DNA-binding protein OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=ssb PE=3 SV=1
Length = 176
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQ---------TSWINLTFWDELAH 137
N V ++G +G E + +P+G+ +A +A +S T T W + F+ A
Sbjct: 5 NKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAE 64
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQ 166
VA Q++ KG Q+Y+ GRL + + +GQ
Sbjct: 65 VAGQYLRKGSQVYVEGRLKTRKWQDQNGQ 93
>sp|Q9PDI7|SSB2_XYLFA Single-stranded DNA-binding protein 2 OS=Xylella fastidiosa (strain
9a5c) GN=ssb2 PE=3 SV=1
Length = 164
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRK-----SATQTSWINLTFWDELAHV 138
N V L+G +G + K+ G + LA VRK + +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q YI G + D DGQ++ ++V ++ +
Sbjct: 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQML 108
>sp|Q8P778|SSB_XANCP Single-stranded DNA-binding protein OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=ssb PE=3 SV=1
Length = 172
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRK-----SATQTSWINLTFWDELAHV 138
N V L+G +G +TK+ +G + LA +RK + +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q+Y+ G L D DG ++ +V ++ +
Sbjct: 66 AGEYLRKGSQVYVEGELRYDKYTGQDGVEKYSTDIVANEMQML 108
>sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A ++A +S QT W + + +LA
Sbjct: 7 NKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=3
Length = 175
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A ++A +S QT W + + +LA
Sbjct: 7 NKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A ++A +S QT W + + +LA
Sbjct: 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|Q889U1|SSB_PSESM Single-stranded DNA-binding protein OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ssb PE=1 SV=1
Length = 189
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G G E ++LP+G + WT + +T W ++ + ++A
Sbjct: 6 NKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
+A +++ KG Q+YI G+L + E DG ++ ++VV
Sbjct: 66 IAGEYLRKGSQVYIEGKLQTREWEK-DGIKRYTTEIVV 102
>sp|P0C118|SSB_BRUAB Single-stranded DNA-binding protein OS=Brucella abortus biovar 1
(strain 9-941) GN=ssb PE=3 SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-LA 136
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E LA
Sbjct: 6 NKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 66 KVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSKEIVLQKF 107
>sp|Q2YPX7|SSB_BRUA2 Single-stranded DNA-binding protein OS=Brucella abortus (strain
2308) GN=ssb PE=3 SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-LA 136
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E LA
Sbjct: 6 NKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 66 KVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSKEIVLQKF 107
>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ssb1 PE=3 SV=1
Length = 162
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E + SG+ + LA + +T W + W +LA +
Sbjct: 6 NKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWGKLADI 65
Query: 139 ASQHVEKGQQIYISGRLVS---DVVESGD 164
SQ+++KG+Q+YI GRL + D ++GD
Sbjct: 66 CSQYLKKGRQVYIEGRLQTRSWDDNKTGD 94
>sp|Q8G0J1|SSB_BRUSU Single-stranded DNA-binding protein OS=Brucella suis biovar 1
(strain 1330) GN=ssb PE=3 SV=1
Length = 168
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-LA 136
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E LA
Sbjct: 6 NKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 66 KVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSTEIVLQKF 107
>sp|Q9RHF4|SSB2_SALTI Single-stranded DNA-binding protein 2 OS=Salmonella typhi GN=ssb2
PE=3 SV=1
Length = 178
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVL---------AWTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G + WT +T W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVVNLSLATSDTWTDKQTGDKKERTEWHRVVLYGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQ 177
+AS+++ KG Q+YI G L + G ++ +VVV Q
Sbjct: 67 IASEYLRKGSQVYIEGALRTRKWTDQSGVEKYTTEVVVSQ 106
>sp|Q9ZJY2|SSB_HELPJ Single-stranded DNA-binding protein OS=Helicobacter pylori (strain
J99) GN=ssb PE=3 SV=1
Length = 181
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELA 136
+ N V ++G + +E K+LPSG A LA + + +I+ + A
Sbjct: 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185
+A+Q++ KG + I GRL + G++ + + + L F+++ S
Sbjct: 61 EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKS 109
>sp|Q8YHC2|SSB_BRUME Single-stranded DNA-binding protein OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ssb PE=3
SV=1
Length = 168
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-LA 136
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E LA
Sbjct: 6 NKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 66 KVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSTEIVLQKF 107
>sp|O25841|SSB_HELPY Single-stranded DNA-binding protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ssb PE=1 SV=1
Length = 179
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELA 136
+ N V ++G + +E K+LPSG A LA + + +I+ + A
Sbjct: 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185
+A+Q++ KG + I GRL + G++ + + + L F+++ S
Sbjct: 61 EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKS 109
>sp|P66846|SSB_BORPE Single-stranded DNA-binding protein OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=ssb PE=3 SV=1
Length = 166
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E ++ P G + W A + +T W + ++ LA
Sbjct: 5 NKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYNRLAE 64
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGD-GQQQTYYKVVVQQLNFV 181
+A ++++KG+ +YI GRL + + D G + ++V Q+ +
Sbjct: 65 IAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVADQMQML 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,772,207
Number of Sequences: 539616
Number of extensions: 3541260
Number of successful extensions: 8577
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 8359
Number of HSP's gapped (non-prelim): 162
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)