Query 025801
Match_columns 248
No_of_seqs 166 out of 1155
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vdy_A SSB, single-stranded DN 100.0 5.6E-29 1.9E-33 197.9 16.1 104 84-187 3-112 (116)
2 2vw9_A Single-stranded DNA bin 100.0 2E-28 6.9E-33 199.9 15.5 106 85-190 1-114 (134)
3 3ulp_A Single-strand binding p 100.0 3.5E-28 1.2E-32 195.6 13.7 104 84-187 4-123 (124)
4 3koj_A Uncharacterized protein 100.0 4.1E-28 1.4E-32 192.2 12.6 95 85-179 10-107 (108)
5 3tqy_A Single-stranded DNA-bin 100.0 1.3E-27 4.6E-32 200.3 15.9 107 82-188 4-119 (158)
6 3ull_A DNA binding protein; DN 100.0 3.9E-28 1.3E-32 197.4 11.8 105 82-186 10-129 (132)
7 1z9f_A Single-strand binding p 100.0 1.2E-27 4E-32 199.8 14.0 105 83-187 13-125 (153)
8 1qvc_A Single stranded DNA bin 99.9 3E-27 1E-31 195.3 15.7 104 84-187 3-118 (145)
9 3lgj_A Single-stranded DNA-bin 99.9 2.7E-27 9.1E-32 200.7 13.8 104 84-187 21-138 (169)
10 3pgz_A Single-stranded DNA-bin 99.9 1.2E-26 4.1E-31 200.4 14.9 107 82-188 22-142 (193)
11 3k7u_C MP18 RNA editing comple 99.9 2.1E-26 7.2E-31 191.5 12.3 104 82-187 2-120 (148)
12 4dam_A Single-stranded DNA-bin 99.9 7.3E-26 2.5E-30 183.9 13.9 95 85-181 14-118 (128)
13 1txy_A Primosomal replication 99.9 1.2E-26 4.1E-31 181.7 8.4 96 85-184 1-103 (104)
14 1eqq_A Single stranded DNA bin 99.9 1.4E-26 4.9E-31 197.6 9.2 103 84-186 4-118 (178)
15 3afp_A Single-stranded DNA-bin 99.9 6.3E-26 2.2E-30 191.8 12.8 101 85-185 3-117 (168)
16 4gs3_A Single-stranded DNA-bin 99.9 7.6E-26 2.6E-30 178.9 10.0 94 87-182 12-106 (107)
17 2fxq_A Single-strand binding p 99.9 3.9E-25 1.3E-29 198.0 15.9 106 81-187 123-233 (264)
18 1v1q_A Primosomal replication 99.9 2.2E-25 7.4E-30 182.7 10.0 99 85-187 18-123 (134)
19 3eiv_A Single-stranded DNA-bin 99.9 1.3E-24 4.4E-29 188.6 14.3 97 84-180 2-108 (199)
20 1se8_A Single-strand binding p 99.9 2E-24 6.9E-29 197.5 15.0 105 82-186 1-114 (301)
21 1se8_A Single-strand binding p 99.9 1.7E-24 5.8E-29 198.0 12.5 106 81-187 124-237 (301)
22 3k81_C MP18 RNA editing comple 99.9 1.5E-24 5.1E-29 182.9 9.9 106 79-186 15-135 (164)
23 2fxq_A Single-strand binding p 99.9 3.5E-24 1.2E-28 191.8 11.3 101 84-185 3-111 (264)
24 3fhw_A Primosomal replication 99.9 9.1E-23 3.1E-27 163.1 11.3 93 86-185 1-100 (115)
25 3k8a_A Putative primosomal rep 99.9 2.1E-22 7.3E-27 158.0 10.4 90 85-182 6-102 (103)
26 4dni_A Fusion protein of RNA-e 99.9 7E-22 2.4E-26 177.3 13.4 96 84-182 144-255 (257)
27 3en2_A Probable primosomal rep 99.8 2.8E-20 9.5E-25 145.6 7.6 78 85-163 1-85 (101)
28 3stb_C RNA-editing complex pro 99.8 2.3E-18 7.8E-23 142.8 14.2 90 83-174 41-136 (148)
29 4dni_A Fusion protein of RNA-e 99.8 1.4E-18 4.9E-23 155.8 11.2 95 84-182 28-128 (257)
30 4dka_C RNA-editing complex pro 97.5 0.00049 1.7E-08 53.6 8.4 81 87-169 4-87 (105)
31 3e0e_A Replication protein A; 95.9 0.042 1.4E-06 41.4 8.6 79 87-182 12-94 (97)
32 2k50_A Replication factor A re 95.7 0.018 6.1E-07 44.2 5.9 68 87-160 17-88 (115)
33 3dm3_A Replication factor A; p 95.1 0.092 3.1E-06 40.3 7.9 83 87-183 15-99 (105)
34 1ynx_A Replication factor-A pr 94.7 0.074 2.5E-06 41.1 6.6 64 85-153 13-79 (114)
35 2hql_A Hypothetical protein Mg 94.6 1.1 3.7E-05 34.1 12.5 87 83-177 5-95 (110)
36 1o7i_A SSB, SSO2364, single st 94.5 0.094 3.2E-06 40.7 6.7 63 86-157 12-78 (119)
37 2k75_A Uncharacterized protein 94.0 0.23 8E-06 37.9 7.9 61 85-157 12-75 (106)
38 3f2b_A DNA-directed DNA polyme 91.4 2.3 8E-05 44.6 13.5 87 84-183 15-103 (1041)
39 3au7_A TIAS, putative uncharac 90.0 2.3 7.9E-05 40.0 10.9 82 82-185 280-363 (402)
40 3kdf_D Replication protein A 3 87.7 2.3 7.9E-05 33.2 7.9 86 77-182 22-110 (132)
41 4gop_B Putative uncharacterize 87.6 1.2 4.2E-05 35.0 6.3 86 77-182 27-115 (136)
42 1jmc_A Protein (replication pr 85.5 2.3 7.9E-05 36.1 7.4 64 85-153 17-83 (246)
43 1eov_A ASPRS, aspartyl-tRNA sy 84.1 10 0.00034 36.2 11.8 88 87-185 37-131 (487)
44 2hpi_A DNA polymerase III alph 82.6 2.1 7E-05 45.7 6.8 80 87-182 1043-1122(1220)
45 4gop_C Putative uncharacterize 82.3 2.2 7.4E-05 39.9 6.3 63 86-153 13-78 (444)
46 3kf8_A Protein STN1; OB fold; 82.1 5.2 0.00018 34.7 8.2 105 79-184 78-185 (220)
47 2kbn_A Conserved protein; nucl 79.8 12 0.0004 28.3 8.7 61 86-157 15-76 (109)
48 3bju_A Lysyl-tRNA synthetase; 77.1 17 0.00059 35.0 10.9 80 87-184 56-141 (521)
49 3a74_A Lysyl-tRNA synthetase; 74.4 32 0.0011 32.8 11.9 78 88-184 58-139 (493)
50 2xgt_A Asparaginyl-tRNA synthe 74.4 21 0.00072 33.4 10.5 83 87-183 12-96 (435)
51 1wjj_A Hypothetical protein F2 70.8 12 0.0004 30.3 6.8 63 84-155 24-99 (145)
52 3nem_A Aspartyl-tRNA synthetas 68.7 42 0.0014 31.5 11.2 82 87-185 17-102 (438)
53 1x54_A Asparaginyl-tRNA synthe 68.1 52 0.0018 30.7 11.6 81 87-184 17-101 (434)
54 4ex5_A Lysine--tRNA ligase; st 67.7 77 0.0026 30.6 13.0 79 87-184 87-169 (529)
55 2pi2_A Replication protein A 3 67.1 12 0.00043 32.6 6.7 84 79-182 64-150 (270)
56 2vl6_A SSO MCM N-TER, minichro 65.9 14 0.00047 32.1 6.7 55 124-182 210-266 (268)
57 3i7f_A Aspartyl-tRNA synthetas 65.2 29 0.00098 33.8 9.4 86 87-184 63-153 (548)
58 3kf6_A Protein STN1; OB fold, 64.9 40 0.0014 27.4 9.0 84 81-183 42-128 (159)
59 1e1o_A Lysyl-tRNA synthetase, 62.6 34 0.0011 32.8 9.3 79 87-184 65-148 (504)
60 1n9w_A Aspartyl-tRNA synthetas 62.2 54 0.0018 30.5 10.5 74 87-184 14-88 (422)
61 1wyd_A Hypothetical aspartyl-t 61.9 45 0.0015 31.1 9.9 80 87-184 17-98 (429)
62 3m4p_A Ehasnrs, asparaginyl-tR 61.5 30 0.001 32.7 8.6 90 86-185 30-123 (456)
63 1jmc_A Protein (replication pr 61.1 25 0.00084 29.6 7.3 63 87-154 139-205 (246)
64 1l0w_A Aspartyl-tRNA synthetas 60.5 18 0.00061 35.4 7.1 86 87-185 17-104 (580)
65 1c0a_A Aspartyl tRNA synthetas 57.2 29 0.001 33.8 8.0 84 87-185 16-106 (585)
66 4hik_A Protection of telomeres 48.7 15 0.00051 29.6 3.7 60 85-152 13-92 (143)
67 3ebe_A Protein MCM10 homolog; 42.0 26 0.0009 29.6 4.3 74 87-166 56-129 (200)
68 1ltl_A DNA replication initiat 38.6 38 0.0013 29.5 5.0 53 124-183 197-249 (279)
69 4gop_C Putative uncharacterize 36.0 43 0.0015 31.0 5.2 66 87-154 134-204 (444)
70 2wkd_A ORF34P2; SSB, single-st 29.9 96 0.0033 24.0 5.3 55 106-170 23-77 (119)
71 1xjv_A Protection of telomeres 24.6 61 0.0021 28.3 3.9 71 86-161 15-85 (294)
72 4hsp_A Hypothetical protein; P 22.5 99 0.0034 25.1 4.4 85 87-182 55-146 (150)
73 4ah6_A Aspartate--tRNA ligase, 20.7 77 0.0026 31.3 4.0 85 87-185 25-114 (617)
No 1
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.96 E-value=5.6e-29 Score=197.86 Aligned_cols=104 Identities=22% Similarity=0.390 Sum_probs=91.5
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC------CceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeee
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT------QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~------~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~ 157 (248)
.|||+|+|+|+|++||+++++++|.++++|+||+++.+. +++||+|++||++|+.+.++|+||+.|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 599999999999999999999999999999999998652 68999999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeeCCCCC
Q 025801 158 DVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (248)
Q Consensus 158 ~~y~dkdG~~r~~~eIva~~I~~L~~k~~~ 187 (248)
+.|+|+||++++.++|+|++|+||++++..
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC-----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999999999999999999999999876643
No 2
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.96 E-value=2e-28 Score=199.95 Aligned_cols=106 Identities=25% Similarity=0.416 Sum_probs=95.5
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------CceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------QTSWINLTFWDELAHVASQHVEKGQQIYISGRLV 156 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~--------~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~ 156 (248)
|||+|+|+|+|++||++|++++|.++++|+||+++++. +++||+|++||++|+.+.++|+||+.|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 68999999999999999999999999999999997531 6889999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEEEEEEEEEEeeCCCCCCCC
Q 025801 157 SDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSS 190 (248)
Q Consensus 157 ~~~y~dkdG~~r~~~eIva~~I~~L~~k~~~~~~ 190 (248)
++.|+|+||++++.++|+|++|.||++++..+++
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~~~~~ 114 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQA 114 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC------
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCcccccc
Confidence 9999999999999999999999999877655433
No 3
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.95 E-value=3.5e-28 Score=195.61 Aligned_cols=104 Identities=22% Similarity=0.415 Sum_probs=92.8
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEeH-HHHHHHHHhcCcCCEEEEEE
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWD-ELAHVASQHVEKGQQIYISG 153 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~---------~~t~wi~V~awG-klAe~~~~~LkKGd~V~VeG 153 (248)
.|||+|+|+|||++||+++++++|+++++|+||+++.+ ++++||+|++|| ++|+.+.++|+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 68999999999999999999999999999999999753 168999999999 89999999999999999999
Q ss_pred EeeeeeeecC--CCcEEEEEEEEEE----EEEEeeCCCCC
Q 025801 154 RLVSDVVESG--DGQQQTYYKVVVQ----QLNFVERSSPS 187 (248)
Q Consensus 154 rL~~~~y~dk--dG~~r~~~eIva~----~I~~L~~k~~~ 187 (248)
+|+++.|+|+ ||++++.++|+|+ +|.||++++..
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~~ 123 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRNF 123 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC-----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCCC
Confidence 9999999999 9999999999998 99999887643
No 4
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.95 E-value=4.1e-28 Score=192.16 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=81.0
Q ss_pred CccEEEEEEEECCCceEEEcCCC-cEEEEEEEEEecCC--CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSG-KVLAWTRLAVRKSA--TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVE 161 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG-~~va~fsLAv~r~~--~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~ 161 (248)
-||+|+|+|||++|||+|++++| .++++|+||+++.. ++++||+|++||++||.+.+||+||++|+|+|+|+++.|+
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 58999999999999999999998 99999999999432 4799999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEEEEEEEE
Q 025801 162 SGDGQQQTYYKVVVQQLN 179 (248)
Q Consensus 162 dkdG~~r~~~eIva~~I~ 179 (248)
|+||++++.+||+|++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 999999999999999985
No 5
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.95 E-value=1.3e-27 Score=200.32 Aligned_cols=107 Identities=23% Similarity=0.433 Sum_probs=96.1
Q ss_pred CCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEeHHHHHHHHHhcCcCCEEEEE
Q 025801 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (248)
Q Consensus 82 ~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~---------~t~wi~V~awGklAe~~~~~LkKGd~V~Ve 152 (248)
|...||+|+|+|||++||++|++++|+++++|+||+++.++ .++||+|++||++|+.+.++|+||+.|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 66789999999999999999999999999999999987541 489999999999999999999999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEEEEEEEEeeCCCCCC
Q 025801 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSM 188 (248)
Q Consensus 153 GrL~~~~y~dkdG~~r~~~eIva~~I~~L~~k~~~~ 188 (248)
|+|+++.|+|+||++++.++|+|++|.||+.++.++
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~~~ 119 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGGN 119 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC------
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCcccC
Confidence 999999999999999999999999999998877553
No 6
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.95 E-value=3.9e-28 Score=197.41 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=94.8
Q ss_pred CCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------------CceEEEEEEeH-HHHHHHHHhcCcC
Q 025801 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------------QTSWINLTFWD-ELAHVASQHVEKG 146 (248)
Q Consensus 82 ~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~--------------~t~wi~V~awG-klAe~~~~~LkKG 146 (248)
|..+||+|+|+|||++||+++++++|.++++|+||+++.+. .++||+|++|| ++|+.+.+||+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 55789999999999999999999999999999999998542 58899999999 5999999999999
Q ss_pred CEEEEEEEeeeeeeecCCCcEEEEEEEEEEEEEEeeCCCC
Q 025801 147 QQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (248)
Q Consensus 147 d~V~VeGrL~~~~y~dkdG~~r~~~eIva~~I~~L~~k~~ 186 (248)
++|+|+|+|+++.|+|+||++++.++|+|++|.||++++.
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k 129 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTK 129 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC-----
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 9999999999999999999999999999999999987653
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=1.2e-27 Score=199.84 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=85.3
Q ss_pred CCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEec-CCC-------CceEEEEEEeHHHHHHHHHhcCcCCEEEEEEE
Q 025801 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK-SAT-------QTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (248)
Q Consensus 83 ~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r-~~~-------~t~wi~V~awGklAe~~~~~LkKGd~V~VeGr 154 (248)
+.+||+|+|+|||++||++|++++|+++++|+||+++ .++ +++||+|++||++|+.+.++|+||++|+|+|+
T Consensus 13 ~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGE 92 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEE
Confidence 4689999999999999999999999999999999998 542 28999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEEEEEEeeCCCCC
Q 025801 155 LVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (248)
Q Consensus 155 L~~~~y~dkdG~~r~~~eIva~~I~~L~~k~~~ 187 (248)
|+++.|+|++|++++.++|+|++|.||++++..
T Consensus 93 L~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 93 MRMRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEEC-------CCCEEEEEEEEEEECC-----
T ss_pred EEeceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999999999999999999999999999876543
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.95 E-value=3e-27 Score=195.33 Aligned_cols=104 Identities=30% Similarity=0.436 Sum_probs=97.8
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEE
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~---------~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGr 154 (248)
+|||+|+|+|||++||++|++++|+++++|+||+++.+ ++++||+|++||++|+.+.++|+||++|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 58999999999999999999999999999999999854 258999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEE---EEEEEEEeeCCCCC
Q 025801 155 LVSDVVESGDGQQQTYYKV---VVQQLNFVERSSPS 187 (248)
Q Consensus 155 L~~~~y~dkdG~~r~~~eI---va~~I~~L~~k~~~ 187 (248)
|+++.|+|+||++++.++| ++++|.||++++..
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 9999999999999999999 99999999877654
No 9
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.95 E-value=2.7e-27 Score=200.65 Aligned_cols=104 Identities=26% Similarity=0.471 Sum_probs=85.9
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEeHH-HHHHHHHhcCcCCEEEEEE
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDE-LAHVASQHVEKGQQIYISG 153 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~---------~t~wi~V~awGk-lAe~~~~~LkKGd~V~VeG 153 (248)
.|||+|+|+|||++||++|++++|+++++|+||++++++ +++||+|++||+ +|+.+.++|+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 489999999999999999999999999999999998642 589999999999 9999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEE----EEEEEeeCCCCC
Q 025801 154 RLVSDVVESGDGQQQTYYKVVV----QQLNFVERSSPS 187 (248)
Q Consensus 154 rL~~~~y~dkdG~~r~~~eIva----~~I~~L~~k~~~ 187 (248)
+|+++.|+|+||++++.++|+| .+|.||++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999999999999999998 599999887765
No 10
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.94 E-value=1.2e-26 Score=200.42 Aligned_cols=107 Identities=30% Similarity=0.473 Sum_probs=94.6
Q ss_pred CCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEeHH-HHHHHHHhcCcCCEEEE
Q 025801 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDE-LAHVASQHVEKGQQIYI 151 (248)
Q Consensus 82 ~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~---------~t~wi~V~awGk-lAe~~~~~LkKGd~V~V 151 (248)
|...||+|+|+|||++||++|++++|+++++|+||+++.++ +++||+|++||+ +|+.+.++|+||++|+|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~V 101 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYI 101 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEE
Confidence 55679999999999999999999999999999999997542 489999999996 99999999999999999
Q ss_pred EEEeeeeeeecCCCcEEEEEEEEEE----EEEEeeCCCCCC
Q 025801 152 SGRLVSDVVESGDGQQQTYYKVVVQ----QLNFVERSSPSM 188 (248)
Q Consensus 152 eGrL~~~~y~dkdG~~r~~~eIva~----~I~~L~~k~~~~ 188 (248)
+|+|+++.|+|+||++++.++|+|+ +|.||+++....
T Consensus 102 eGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~~ 142 (193)
T 3pgz_A 102 EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAAG 142 (193)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC------
T ss_pred EEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCCC
Confidence 9999999999999999999999999 799999877553
No 11
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.94 E-value=2.1e-26 Score=191.53 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=87.3
Q ss_pred CCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEeHHH-HHHHHHhcCcCCEEEE
Q 025801 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDEL-AHVASQHVEKGQQIYI 151 (248)
Q Consensus 82 ~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~---------~~t~wi~V~awGkl-Ae~~~~~LkKGd~V~V 151 (248)
|+..||+|+|+|||++||+ +++ +|+++++|+||+++.+ ++++||+|++||++ |+.+.+||+||++|+|
T Consensus 2 M~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 2 MSKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp ---CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred CcccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 5677999999999999999 999 9999999999999764 36899999999997 9999999999999999
Q ss_pred EEEeeeeeeecCCCcEEEEEEEEEE-----EEEEeeCCCCC
Q 025801 152 SGRLVSDVVESGDGQQQTYYKVVVQ-----QLNFVERSSPS 187 (248)
Q Consensus 152 eGrL~~~~y~dkdG~~r~~~eIva~-----~I~~L~~k~~~ 187 (248)
+|+|+++.|+|+||+++|.++|++- .+.+|+.++..
T Consensus 80 eGrL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~~ 120 (148)
T 3k7u_C 80 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 120 (148)
T ss_dssp EEEEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC--
T ss_pred EEEEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCCC
Confidence 9999999999999999999999975 69999876643
No 12
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.93 E-value=7.3e-26 Score=183.91 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=89.6
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC----------CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEE
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA----------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~----------~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGr 154 (248)
.+|+|+|+|||++|||++++++| ++++|+||+++.+ .+++||+|++||++||.+.++|+||++|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 48999999999999999999999 9999999999753 168999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEEEEEEe
Q 025801 155 LVSDVVESGDGQQQTYYKVVVQQLNFV 181 (248)
Q Consensus 155 L~~~~y~dkdG~~r~~~eIva~~I~~L 181 (248)
|+++.| |+||++++.++|+|++|..-
T Consensus 93 L~~~~~-dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 93 LKVRTD-VREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEEEEEC
T ss_pred EEEeEE-cCCCCEEEEEEEEEEEEEec
Confidence 999999 89999999999999999764
No 13
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.93 E-value=1.2e-26 Score=181.67 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=80.8
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceE-------EEEEEeHHHHHHHHHhcCcCCEEEEEEEeee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSW-------INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~w-------i~V~awGklAe~~~~~LkKGd~V~VeGrL~~ 157 (248)
|||+|+|+|||++||++|++++|.++++|+||++....+++| |+|++||++|+.+.+||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 789999999999999999999999999999999755456778 9999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeeCC
Q 025801 158 DVVESGDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 158 ~~y~dkdG~~r~~~eIva~~I~~L~~k 184 (248)
+ +|+||+++ ++|+|++|+||+++
T Consensus 81 ~--~~~~G~~r--~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H--KAKNGLSK--MVLHAEQIELIDSG 103 (104)
T ss_dssp ----------C--CEEEEEEEEEC---
T ss_pred c--cCCCCCEE--EEEEEEEEEECcCC
Confidence 8 68899988 89999999999754
No 14
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.93 E-value=1.4e-26 Score=197.57 Aligned_cols=103 Identities=30% Similarity=0.438 Sum_probs=95.3
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEeHHHHHHHHHhcCcCCEEEEEEE
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~---------~t~wi~V~awGklAe~~~~~LkKGd~V~VeGr 154 (248)
.|||+|+|+|||++||++|++++|+++++|+||+++.+. +++||+|++||++|+.+.+||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999999999999999999999999999998642 48899999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEE---EEEEEEEeeCCCC
Q 025801 155 LVSDVVESGDGQQQTYYKV---VVQQLNFVERSSP 186 (248)
Q Consensus 155 L~~~~y~dkdG~~r~~~eI---va~~I~~L~~k~~ 186 (248)
|+++.|+|+||++++.++| ++++|.||+.+..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 9999999999999999999 9999999987654
No 15
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.93 E-value=6.3e-26 Score=191.84 Aligned_cols=101 Identities=19% Similarity=0.365 Sum_probs=91.1
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC----------CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEE
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA----------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~----------~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGr 154 (248)
.||+|+|+|||++||++|++++|+++++|+||+++++ .+++||+|++||++|+.+.++|+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 6899999999999999999999999999999998642 158999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEE----EEEEeeCCC
Q 025801 155 LVSDVVESGDGQQQTYYKVVVQ----QLNFVERSS 185 (248)
Q Consensus 155 L~~~~y~dkdG~~r~~~eIva~----~I~~L~~k~ 185 (248)
|+++.|+|+||++++.++|+|+ +|.|++.+.
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~ 117 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKV 117 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEecccc
Confidence 9999999999999999999888 667776544
No 16
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.93 E-value=7.6e-26 Score=178.92 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=82.3
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeee-eeeecCCC
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS-DVVESGDG 165 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~-~~y~dkdG 165 (248)
|+|+|+|||++|||++++++|..+++|+|||+|..+++|||+|++|+++|+.+.. .||++|.|+|+|++ +.|++++|
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~--~kG~~v~v~G~lrsy~~~~~~dG 89 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNL--EVGTRVKIEGQLRSYNRKSPEEG 89 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCC--CTTCEEEEEEEEEEEECC-----
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhh--cCCCEEEEEEEEEecceEECCCC
Confidence 9999999999999999999999999999999999999999999999999998754 59999999999997 77999999
Q ss_pred cEEEEEEEEEEEEEEee
Q 025801 166 QQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 166 ~~r~~~eIva~~I~~L~ 182 (248)
++++.++|+|++|+||+
T Consensus 90 ~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 90 KNKLILTVFARDISVVP 106 (107)
T ss_dssp ---EEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEEEEEcc
Confidence 99999999999999996
No 17
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.93 E-value=3.9e-25 Score=198.00 Aligned_cols=106 Identities=26% Similarity=0.392 Sum_probs=95.0
Q ss_pred cCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-----CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEe
Q 025801 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWDELAHVASQHVEKGQQIYISGRL 155 (248)
Q Consensus 81 ~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~-----~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL 155 (248)
.|+.+||+|+|+|||++||++|++++|+++++|+||+++.+ ++++||+|++||++|+.+. +|+||++|+|+|+|
T Consensus 123 ~m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 123 RLRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRL 201 (264)
T ss_dssp --CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEE
T ss_pred ccccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEE
Confidence 45668999999999999999999999999999999999875 3689999999999999999 99999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEEEEEEeeCCCCC
Q 025801 156 VSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (248)
Q Consensus 156 ~~~~y~dkdG~~r~~~eIva~~I~~L~~k~~~ 187 (248)
+++.|+|+||++++.++|+|++|.||++++..
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99999999999999999999999999876654
No 18
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.92 E-value=2.2e-25 Score=182.68 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=88.1
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-------CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-------TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~-------~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~ 157 (248)
|||+|+|+|||++|||+|++++|.++++|+||+++.. +.++||+|++||++||.+.+||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 5699999999999999999999999999999997532 135799999999999999999999999999999998
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeeCCCCC
Q 025801 158 DVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (248)
Q Consensus 158 ~~y~dkdG~~r~~~eIva~~I~~L~~k~~~ 187 (248)
+ .|+||++++.+ +|++|+||+++++.
T Consensus 98 r--~~k~G~kr~~~--~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 98 H--KAKNGLSKMVL--HAEQIELIDSVDKL 123 (134)
T ss_dssp E--CTTTTSCEEEE--EEEEEEETTSCSCC
T ss_pred E--ECCCCCEEEEE--EEEEEEECcCCCCc
Confidence 7 37899988765 89999999876543
No 19
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.92 E-value=1.3e-24 Score=188.60 Aligned_cols=97 Identities=20% Similarity=0.380 Sum_probs=81.5
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecC-C---------CCceEEEEEEeHHHHHHHHHhcCcCCEEEEEE
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS-A---------TQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~-~---------~~t~wi~V~awGklAe~~~~~LkKGd~V~VeG 153 (248)
..+|+|+|+|||++|||+|++++|+++++|+||++++ + .+++||+|++|+++||.+.++|+||++|+|+|
T Consensus 2 a~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 2 AGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp --CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred CcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEE
Confidence 3579999999999999999999999999999999742 2 26999999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEEEEEE
Q 025801 154 RLVSDVVESGDGQQQTYYKVVVQQLNF 180 (248)
Q Consensus 154 rL~~~~y~dkdG~~r~~~eIva~~I~~ 180 (248)
+|++++|+|+||++++.++|+|++|..
T Consensus 82 rL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 82 RLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 999999999999999999999999876
No 20
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.92 E-value=2e-24 Score=197.54 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=91.7
Q ss_pred CCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------CceEEEEEEeHHHHHHHHHh-cCcCCEEEEE
Q 025801 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------QTSWINLTFWDELAHVASQH-VEKGQQIYIS 152 (248)
Q Consensus 82 ~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~--------~t~wi~V~awGklAe~~~~~-LkKGd~V~Ve 152 (248)
|..+||+|+|+|+|++||++|++++|.++++|+||+++++. .++||+|++||++|+.+.+| |+||++|+|+
T Consensus 1 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~Ve 80 (301)
T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVE 80 (301)
T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEE
T ss_pred CCCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEE
Confidence 34589999999999999999999999999999999987542 47899999999999999999 9999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEEEEEEEEeeCCCC
Q 025801 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (248)
Q Consensus 153 GrL~~~~y~dkdG~~r~~~eIva~~I~~L~~k~~ 186 (248)
|+|+++.|+|+||++++.++|+|++|.||+.++.
T Consensus 81 G~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 81 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 9999999999999999999999999999987653
No 21
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.91 E-value=1.7e-24 Score=198.03 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=90.5
Q ss_pred cCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC--------CCceEEEEEEeHHHHHHHHHhcCcCCEEEEE
Q 025801 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (248)
Q Consensus 81 ~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~--------~~t~wi~V~awGklAe~~~~~LkKGd~V~Ve 152 (248)
.|+.|||+|+|+|+|++||++|++++|+++++|+||+++.+ ++++||+|++||++|+.+.+ |+||++|+|+
T Consensus 124 rm~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~ 202 (301)
T 1se8_A 124 RMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIM 202 (301)
T ss_dssp EEETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEE
T ss_pred chhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEE
Confidence 46679999999999999999999999999999999999853 25889999999999999999 9999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEEEEEEEEeeCCCCC
Q 025801 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (248)
Q Consensus 153 GrL~~~~y~dkdG~~r~~~eIva~~I~~L~~k~~~ 187 (248)
|+|+.+.|+|+||++++.++|+|++|+||+.++..
T Consensus 203 GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 203 GRLVNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEEEEECC------CEEEEEEEEEEEECCC----
T ss_pred EEEeeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 99999999999999999999999999999876543
No 22
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.91 E-value=1.5e-24 Score=182.93 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred cccCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEeHHH-HHHHHHhcCcCCE
Q 025801 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDEL-AHVASQHVEKGQQ 148 (248)
Q Consensus 79 i~~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~---------~~t~wi~V~awGkl-Ae~~~~~LkKGd~ 148 (248)
+..+...||+|+|+|||++|||+|+++ .++++|+||+++.+ ++++||+|++||++ ||.+.+||+||++
T Consensus 15 ~~r~a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~ 92 (164)
T 3k81_C 15 FMRCCKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNV 92 (164)
T ss_dssp -----CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred hhHHhcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCE
Confidence 445677899999999999999999998 79999999999532 36999999999999 9999999999999
Q ss_pred EEEEEEeeeeeeecCCCcEEEEE-EEEEE----EEEEeeCCCC
Q 025801 149 IYISGRLVSDVVESGDGQQQTYY-KVVVQ----QLNFVERSSP 186 (248)
Q Consensus 149 V~VeGrL~~~~y~dkdG~~r~~~-eIva~----~I~~L~~k~~ 186 (248)
|+|+|+|+++.|+|++|++++.+ .|+|. .+.+|+.++.
T Consensus 93 V~VeGrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~ 135 (164)
T 3k81_C 93 VCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 135 (164)
T ss_dssp EEECCEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC---
T ss_pred EEEEEEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCC
Confidence 99999999999999998776644 55555 7999986654
No 23
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.90 E-value=3.5e-24 Score=191.81 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=85.9
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC--------CceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEe
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------QTSWINLTFWDELAHVASQHVEKGQQIYISGRL 155 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~--------~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL 155 (248)
.+||+|+|+|+|++||++|++++|.++++|+||+++.+. .++||+|++||++|+.+.++|+||++|+|+|+|
T Consensus 3 ~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 3 RGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred CceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEEE
Confidence 479999999999999999999999999999999998641 478999999999999999999999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEEEEEEeeCCC
Q 025801 156 VSDVVESGDGQQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 156 ~~~~y~dkdG~~r~~~eIva~~I~~L~~k~ 185 (248)
+++.|+| ||++++.++|+|++|.||+.+.
T Consensus 83 ~~~~~~~-dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEK-DGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC----------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEe-CCEEEEEEEEEEEEEEECcCCc
Confidence 9999998 9999999999999999998665
No 24
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.88 E-value=9.1e-23 Score=163.14 Aligned_cols=93 Identities=20% Similarity=0.155 Sum_probs=82.8
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------CCce-EEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeee
Q 025801 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTS-WINLTFWDELAHVASQHVEKGQQIYISGRLVSD 158 (248)
Q Consensus 86 mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~------~~t~-wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~ 158 (248)
||+|+|+|+|++|||+|++++|.++++|+||+++.. ++.+ ||+|++||++||.+ +||+||++|.|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 799999999999999999999999999999998643 2344 49999999999998 999999999999999998
Q ss_pred eeecCCCcEEEEEEEEEEEEEEeeCCC
Q 025801 159 VVESGDGQQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 159 ~y~dkdG~~r~~~eIva~~I~~L~~k~ 185 (248)
+ ++| +.++|+|++|++++.+.
T Consensus 80 s---~~G---~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 80 R---KDS---VKVKLHLQQARRIAGSM 100 (115)
T ss_dssp S---TTC---SSEEEEEEEEEECCCSC
T ss_pred C---CCC---CEEEEEEEEEEEcCCCC
Confidence 4 678 56899999999997554
No 25
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.88 E-value=2.1e-22 Score=157.99 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=79.1
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------CCceE-EEEEEeHHHHHHHHHhcCcCCEEEEEEEeee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTSW-INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~------~~t~w-i~V~awGklAe~~~~~LkKGd~V~VeGrL~~ 157 (248)
|+|+|+|+|+|++|||+|++++|.++++|+||+++.+ .+++| |+|++||++|| +.+ |+||++|+|+|+|++
T Consensus 6 m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~ 83 (103)
T 3k8a_A 6 FTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQ 83 (103)
T ss_dssp CCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEE
T ss_pred cccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEE
Confidence 4499999999999999999999999999999998753 24455 99999999999 665 999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEee
Q 025801 158 DVVESGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 158 ~~y~dkdG~~r~~~eIva~~I~~L~ 182 (248)
++|. |. .+.+++++|++++
T Consensus 84 rs~~---~~---~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 84 KSRR---SL---MPMLRIQNIKEYK 102 (103)
T ss_dssp SSSS---CC---CEEEEEEEEEECC
T ss_pred CccC---Cc---cEEEEEEEEEEcC
Confidence 9993 33 6789999999984
No 26
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.87 E-value=7e-22 Score=177.32 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=86.2
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEeHHH--HHHHHHhcCcCCEEEEE
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDEL--AHVASQHVEKGQQIYIS 152 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~---------~t~wi~V~awGkl--Ae~~~~~LkKGd~V~Ve 152 (248)
..+|+|+|+||| +|||+|+++ |+++++|+||+++.++ +++||+|++||++ |+ +.++|+||++|+|+
T Consensus 144 ~~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~Ve 220 (257)
T 4dni_A 144 KSVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVN 220 (257)
T ss_dssp SCEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEE
T ss_pred cccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEE
Confidence 358999999999 999999999 9999999999998641 6899999999999 99 88899999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEE-EE----EEEEee
Q 025801 153 GRLVSDVVESGDGQQQTYYKVV-VQ----QLNFVE 182 (248)
Q Consensus 153 GrL~~~~y~dkdG~~r~~~eIv-a~----~I~~L~ 182 (248)
|+|+++.|+|++|++++.++++ |. .+.+|+
T Consensus 221 GrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 221 GRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEec
Confidence 9999999999999999988755 44 566665
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.81 E-value=2.8e-20 Score=145.64 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=67.7
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------CCceE-EEEEEeHHHHHHHHHhcCcCCEEEEEEEeee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTSW-INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~------~~t~w-i~V~awGklAe~~~~~LkKGd~V~VeGrL~~ 157 (248)
.||+|+|+|+|++|||+|+|++|.++++|+||+++.. ++++| |+|++||++||.+.+ ++||+.|.|+|+|++
T Consensus 1 ~MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~t 79 (101)
T 3en2_A 1 AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLAR 79 (101)
T ss_dssp CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEE
T ss_pred CcCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEe
Confidence 3899999999999999999999999999999998753 24555 999999999999987 789999999999999
Q ss_pred eeeecC
Q 025801 158 DVVESG 163 (248)
Q Consensus 158 ~~y~dk 163 (248)
++|.++
T Consensus 80 rs~~s~ 85 (101)
T 3en2_A 80 KHRSSK 85 (101)
T ss_dssp CC----
T ss_pred CcCCCC
Confidence 999754
No 28
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.78 E-value=2.3e-18 Score=142.78 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=81.6
Q ss_pred CCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-----CCceEEEEEEeH-HHHHHHHHhcCcCCEEEEEEEee
Q 025801 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWD-ELAHVASQHVEKGQQIYISGRLV 156 (248)
Q Consensus 83 ~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~-----~~t~wi~V~awG-klAe~~~~~LkKGd~V~VeGrL~ 156 (248)
-+.+|+|+|+|||+ ||+.+++. +.+++.|+||+++.+ .++|||+|.+|| ++|+.+.++|+||++|+|+|||+
T Consensus 41 ~r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLr 118 (148)
T 3stb_C 41 WRCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLR 118 (148)
T ss_dssp CSCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred heecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEE
Confidence 35799999999996 88999984 779999999998864 368999999995 89999999999999999999999
Q ss_pred eeeeecCCCcEEEEEEEE
Q 025801 157 SDVVESGDGQQQTYYKVV 174 (248)
Q Consensus 157 ~~~y~dkdG~~r~~~eIv 174 (248)
+.+|.|++|+++|.+-++
T Consensus 119 mn~~~d~~gkk~Y~~p~i 136 (148)
T 3stb_C 119 MVPQYDGSMRKYYHYPVI 136 (148)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred cceeECCCCCEEeeccEE
Confidence 999999999999988665
No 29
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.77 E-value=1.4e-18 Score=155.79 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=84.6
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-----CCceEEEEEEeH-HHHHHHHHhcCcCCEEEEEEEeee
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWD-ELAHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~-----~~t~wi~V~awG-klAe~~~~~LkKGd~V~VeGrL~~ 157 (248)
++||+|+|+|||++| |+|+|++|. ++.|+|++++.+ .+++|+.|++|| ++||.+.+||+||++|+|+|+|++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 589999999999999 999999883 667777777643 357788999999 999999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEee
Q 025801 158 DVVESGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 158 ~~y~dkdG~~r~~~eIva~~I~~L~ 182 (248)
|+++||++++.++|++.++.-+.
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTT
T ss_pred --eECCCCCcEEEEEEEEEEEEecC
Confidence 78889999999999999997753
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.48 E-value=0.00049 Score=53.57 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=55.1
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC-CCceEEEEEEeHHHH--HHHHHhcCcCCEEEEEEEeeeeeeecC
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-TQTSWINLTFWDELA--HVASQHVEKGQQIYISGRLVSDVVESG 163 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~-~~t~wi~V~awGklA--e~~~~~LkKGd~V~VeGrL~~~~y~dk 163 (248)
.++.|+|++.. .+.-+. ....+..|+|.++-.. .+-++|.+-+||+.+ +.+.+.|+.|+.|.|.|+|+...--|.
T Consensus 4 sn~vlvG~V~D-VQ~Gfl-~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIAD-VQHGFL-GAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEEE-EEEEEE-TTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEEE-eeeccc-ccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 46889999865 433333 3468999999996532 578999999999976 888999999999999999999766554
Q ss_pred CCcEEE
Q 025801 164 DGQQQT 169 (248)
Q Consensus 164 dG~~r~ 169 (248)
.-++.|
T Consensus 82 ~~kkyy 87 (105)
T 4dka_C 82 VSKRLH 87 (105)
T ss_dssp TTCSEE
T ss_pred ccceec
Confidence 444433
No 31
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.93 E-value=0.042 Score=41.41 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=55.2
Q ss_pred cEEEEEEEECCCceEEE--cCCCc--EEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeeec
Q 025801 87 NTVHLIGVVGTPIETKH--LPSGK--VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVES 162 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~--t~nG~--~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~d 162 (248)
..+.++|+|..-.+.+. .++|. .+.++.|+ ++|--+++++|++.|+. .++.||.|.|.|+.+. |.
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~-----DeTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~--~~- 80 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK-----DDTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQ--GY- 80 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE-----ETTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEE--C--
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE-----CCCCcEEEEEECCcccc---ccCCCCEEEEEEEEEE--cC-
Confidence 68999999998665555 33663 56666554 35778999999998876 6999999999997633 32
Q ss_pred CCCcEEEEEEEEEEEEEEee
Q 025801 163 GDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 163 kdG~~r~~~eIva~~I~~L~ 182 (248)
| .+++.+.+..-+.
T Consensus 81 --~----~~el~~g~~~~i~ 94 (97)
T 3e0e_A 81 --S----GLEISVDNIGIIE 94 (97)
T ss_dssp -------CEEEEEEEEEEEE
T ss_pred --C----eEEEEECCCcEEE
Confidence 2 5577777766664
No 32
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.74 E-value=0.018 Score=44.20 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=51.3
Q ss_pred cEEEEEEEECCCceEE--EcCCC--cEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeee
Q 025801 87 NTVHLIGVVGTPIETK--HLPSG--KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (248)
Q Consensus 87 N~V~LiGrLg~dPelr--~t~nG--~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y 160 (248)
..+.++|.|..--+++ .+++| ..+..+.|+ +++.-+++++|++.++.. +.++.|+.|.|.|..-...|
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~-----D~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIA-----DDTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE-----ETTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE-----eCCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEcccc
Confidence 4679999998864555 45677 678777776 344589999999877654 67999999999998744445
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.08 E-value=0.092 Score=40.31 Aligned_cols=83 Identities=20% Similarity=0.390 Sum_probs=59.4
Q ss_pred cEEEEEEEECCCceEEEc--CCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeeecCC
Q 025801 87 NTVHLIGVVGTPIETKHL--PSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGD 164 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t--~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~dkd 164 (248)
+.+.++|+|..--+.+.. ++|...-.+.+.+.+ +|--+++++|++.|+. .+++||.|.|.|+.+... .
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D---~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~----~ 84 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD---ETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGY----Y 84 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE---TTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECT----T
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC---CCCcEEEEEECccccc---ccCCCCEEEEEEEEEEcc----C
Confidence 689999999987666643 467654444444433 3446999999998887 799999999988876641 2
Q ss_pred CcEEEEEEEEEEEEEEeeC
Q 025801 165 GQQQTYYKVVVQQLNFVER 183 (248)
Q Consensus 165 G~~r~~~eIva~~I~~L~~ 183 (248)
| .+++.+.+...++.
T Consensus 85 g----~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 85 G----GLECTANYVEILKK 99 (105)
T ss_dssp S----SEEEEEEEEEEEEC
T ss_pred C----CEEEEeCCceEEEe
Confidence 2 34777777777754
No 34
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.074 Score=41.11 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred CccEEEEEEEECCCceEEEcCC--C-cEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEE
Q 025801 85 LTNTVHLIGVVGTPIETKHLPS--G-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~n--G-~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeG 153 (248)
.+++..|.|||..--++|...+ | ..+..+.|+ + ++.-|++++|+++|+.+...|+.|+.++|++
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~--D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL--D---TSGEIRATAFNDFATKFNEILQEGKVYYVSK 79 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE--E---TTEEEEEEECHHHHHHHHHHSCSSSEEEEES
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEE--C---CCCeEEEEECHHHHHHHHhhcccCcEEEECC
Confidence 4678999999998887776543 2 245555554 2 2238999999999999999999999999996
No 35
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=94.63 E-value=1.1 Score=34.12 Aligned_cols=87 Identities=15% Similarity=0.037 Sum_probs=59.8
Q ss_pred CCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCC---CceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeee
Q 025801 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDV 159 (248)
Q Consensus 83 ~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~---~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~ 159 (248)
..|+|.|.|.|.|.. .+...+.+ -...++.-.|.+. =+||+-+-+-|++|-.+.+|.+|=..+.|+|.|++.
T Consensus 5 ggMLN~V~LEG~IeS---~kWS~kKT-GF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY- 79 (110)
T 2hql_A 5 GGMLNRVFLEGEIES---SCWSVKKT-GFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTY- 79 (110)
T ss_dssp --CCEEEEEEEEEEE---EEECTTCS-EEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEE-
T ss_pred cceEEEEEEeeeeeh---hcccccCc-eEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhH-
Confidence 368999999999876 44544322 2223344444443 478999999999999999999999999999999875
Q ss_pred eecC-CCcEEEEEEEEEEE
Q 025801 160 VESG-DGQQQTYYKVVVQQ 177 (248)
Q Consensus 160 y~dk-dG~~r~~~eIva~~ 177 (248)
.++ .+. ..+.|.+..
T Consensus 80 -~ekkS~i--WKTtI~~~K 95 (110)
T 2hql_A 80 -LERKSEI--WKTTIEIVK 95 (110)
T ss_dssp -EETTTTE--EEEEEEEEE
T ss_pred -HHHhccc--ceeEEEEEE
Confidence 444 454 334454433
No 36
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.48 E-value=0.094 Score=40.68 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=46.7
Q ss_pred ccEEEEEEEECCCceEE--EcCCCc-EEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEE-EEeee
Q 025801 86 TNTVHLIGVVGTPIETK--HLPSGK-VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (248)
Q Consensus 86 mN~V~LiGrLg~dPelr--~t~nG~-~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~Ve-GrL~~ 157 (248)
.+.+.++|.|..--+.+ .+++|+ .+..+.|+ ++|--+++++|++.|+ .++.|+.|.|. |+...
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~-----D~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG-----DETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTA 78 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE-----ETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE-----eCCCEEEEEEECChhh----cCCCCCEEEEEeEEEEE
Confidence 45788999987754333 567886 77766666 3444599999998763 48999999999 87754
No 37
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.99 E-value=0.23 Score=37.92 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=47.9
Q ss_pred CccEEEEEEEECCCceEEEcCCCcE--EEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEE-EEeee
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKV--LAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~--va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~Ve-GrL~~ 157 (248)
.++.|.++|+|..--+.+.+++|.. ++.+.|+ ++|--+++++|++. +++||.|.|+ |+.+.
T Consensus 12 g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~-----DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 12 STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE-----DDTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE-----CSSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEEccccccccCCCeeEEEEEEEE-----cCCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 4577999999988666656668864 7776666 45567999999986 9999999999 77754
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=91.43 E-value=2.3 Score=44.55 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHH--HHHHHHHhcCcCCEEEEEEEeeeeeee
Q 025801 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE--LAHVASQHVEKGQQIYISGRLVSDVVE 161 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGk--lAe~~~~~LkKGd~V~VeGrL~~~~y~ 161 (248)
.-+.+|++.|.|-. .+.+.+++|+.+..|.|. + .|+=+.|..|-+ ......+.+++|+.|.|.|.+..+.|.
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t--d---~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~ 88 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT--D---YTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFV 88 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE--C---SSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEE--e---CCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCC
Confidence 34688999999876 889999999988777763 2 355688988854 333456779999999999999988774
Q ss_pred cCCCcEEEEEEEEEEEEEEeeC
Q 025801 162 SGDGQQQTYYKVVVQQLNFVER 183 (248)
Q Consensus 162 dkdG~~r~~~eIva~~I~~L~~ 183 (248)
+ + +.+.+..|.-+..
T Consensus 89 -~--~----~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 89 -R--D----LVIIANDLNEIAA 103 (1041)
T ss_dssp -T--E----EEEEEEEEEEECC
T ss_pred -c--c----eEEEeeeeEEecc
Confidence 2 2 2355566665543
No 39
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=89.96 E-value=2.3 Score=40.04 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeH--HHHHHHHHhcCcCCEEEEEEEeeeee
Q 025801 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD--ELAHVASQHVEKGQQIYISGRLVSDV 159 (248)
Q Consensus 82 ~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awG--klAe~~~~~LkKGd~V~VeGrL~~~~ 159 (248)
+.+.+-.+.+.|.|...|... ++|. +.|+|.. ++.-++|.+|. +....+...|..||.|.|.|.++.
T Consensus 280 ~~~~~~~~~v~G~V~~~P~~~--~GGH--V~f~l~d-----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~-- 348 (402)
T 3au7_A 280 RLENYRSYRLRGRVTLEPYDI--EGGH--VFFEIDT-----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK-- 348 (402)
T ss_dssp SCCTTCEEEEEEEEEEEEEEE--TTTE--EEEEEEE-----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET--
T ss_pred ccccCceEEEEEEEecCcEec--cCce--EEEEEEc-----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC--
Confidence 335678999999999988754 4564 4567664 25679999999 456667778999999999999543
Q ss_pred eecCCCcEEEEEEEEEEEEEEeeCCC
Q 025801 160 VESGDGQQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 160 y~dkdG~~r~~~eIva~~I~~L~~k~ 185 (248)
| .|.++++.++.-.+
T Consensus 349 -----g------tLnvEk~~v~~l~~ 363 (402)
T 3au7_A 349 -----D------TINLEKIQIVELAE 363 (402)
T ss_dssp -----T------EEEEEEEEEEECCS
T ss_pred -----C------EEEEEEEEEcccCC
Confidence 4 78888888886533
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=87.68 E-value=2.3 Score=33.22 Aligned_cols=86 Identities=12% Similarity=0.205 Sum_probs=56.6
Q ss_pred CccccCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCce-EEEEEEeHHHHHH--HHHhcCcCCEEEEEE
Q 025801 77 PEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDELAHV--ASQHVEKGQQIYISG 153 (248)
Q Consensus 77 ~~i~~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~-wi~V~awGklAe~--~~~~LkKGd~V~VeG 153 (248)
.........++.|.|+|.|.. +.. ...+..|.|. +.|- -+.|..|.+..+. -...++.|+.|.|.|
T Consensus 22 ~~f~i~g~~i~~V~iVG~V~~---~~~---~~~~~~~~ld-----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G 90 (132)
T 3kdf_D 22 EVFRIGNVEISQVTIVGIIRH---AEK---APTNIVYKID-----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG 90 (132)
T ss_dssp SCEEETTEECCEEEEEEEEEE---EEE---CSSEEEEEEE-----CSSSSCEEEEEEC---------CCCCTTCEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE---EEE---cCCeEEEEEE-----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEE
Confidence 334455667899999999987 222 3456677775 4556 7999999864332 245689999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEEEEEEee
Q 025801 154 RLVSDVVESGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 154 rL~~~~y~dkdG~~r~~~eIva~~I~~L~ 182 (248)
+++. | +|++ .|.+..|..++
T Consensus 91 ~l~~--f---~g~~----qi~~~~ir~v~ 110 (132)
T 3kdf_D 91 HLRS--F---QNKK----SLVAFKIMPLE 110 (132)
T ss_dssp EEEE--E---TTEE----EEEEEEEEECS
T ss_pred EEEe--E---CCEE----EEEEEEEEEcC
Confidence 9987 4 3443 46677777664
No 41
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=87.63 E-value=1.2 Score=34.99 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=58.3
Q ss_pred CccccCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHH---HHHhcCcCCEEEEEE
Q 025801 77 PEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHV---ASQHVEKGQQIYISG 153 (248)
Q Consensus 77 ~~i~~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~---~~~~LkKGd~V~VeG 153 (248)
.........++.|.|+|.|.. +. .+..+..|.|. +.|--|.|..|....+. -...++.|+.|.|.|
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~---~~---~~~~~~~~~ld-----D~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G 95 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRN---IS---RNATNVAYSVE-----DGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLG 95 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEE---EE---ECSSEEEEEEE-----CSSCEEEEEEECC--------CCSCCTTCEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE---EE---ecCCeEEEEEE-----CCCCCEEEEEecccCCcccccccccCCCCEEEEEE
Confidence 445556778999999999987 22 23457777775 44557999999864432 245689999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEEEEEEee
Q 025801 154 RLVSDVVESGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 154 rL~~~~y~dkdG~~r~~~eIva~~I~~L~ 182 (248)
+++. | +|++ .|.+..|..++
T Consensus 96 ~v~~--f---~g~~----qi~~~~ir~v~ 115 (136)
T 4gop_B 96 TLKS--F---QNRR----SISSGHMRPVI 115 (136)
T ss_dssp EEEE--E---TTEE----EEEESEEEECS
T ss_pred EEEE--e---CCEE----EEEEEEEEECC
Confidence 9976 4 3443 56666666663
No 42
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=85.50 E-value=2.3 Score=36.11 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=47.6
Q ss_pred CccEEEEEEEECCCceEEEcC--CC-cEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEE
Q 025801 85 LTNTVHLIGVVGTPIETKHLP--SG-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~--nG-~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeG 153 (248)
.++...|.|||..--++|... +| ..+..+.|+ + +.. -|++++|+++++.....|+.|+.+.|++
T Consensus 17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~--D--e~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV--D--ESG-EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE--C--SSC-EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCceEEEEEEEEecccceeeCCCCCceEEEEEEE--C--CCC-eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 356789999999877666543 22 244444443 2 222 7999999999999999999999999997
No 43
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=84.09 E-value=10 Score=36.25 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=56.8
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeH-------HHHHHHHHhcCcCCEEEEEEEeeeee
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-------ELAHVASQHVEKGQQIYISGRLVSDV 159 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awG-------klAe~~~~~LkKGd~V~VeGrL~~~~ 159 (248)
..|.|.|+|.+ +|.. |+.++.+.|. + .+..+.|++-. +......+.|..||.|.|+|.+..+.
T Consensus 37 ~~V~v~GwV~~---~R~~--g~~l~Fi~Lr-D----~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~ 106 (487)
T 1eov_A 37 KEVLFRARVHN---TRQQ--GATLAFLTLR-Q----QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVD 106 (487)
T ss_dssp CEEEEEEEEEE---EEEC--SSSEEEEEEE-E----TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECS
T ss_pred CEEEEEEEEEE---eecc--CCccEEEEEE-E----CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 46999999987 5544 5433444444 2 23357777642 22223446799999999999997653
Q ss_pred eecCCCcEEEEEEEEEEEEEEeeCCC
Q 025801 160 VESGDGQQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 160 y~dkdG~~r~~~eIva~~I~~L~~k~ 185 (248)
-..+ +.+.-.++|.|+++.+|....
T Consensus 107 ~~~~-~~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 107 EPIK-SATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp SCCT-TSSEEEEEEEEEEEEEEECCC
T ss_pred CCCc-CCCCCcEEEEEEEEEEeeccc
Confidence 2211 123457899999999997543
No 44
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=82.56 E-value=2.1 Score=45.66 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=40.3
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeeecCCCc
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQ 166 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~dkdG~ 166 (248)
..|.+.|-|.. .+.+.|++|+.++.++|. +.+.-++|++|.+.-+.....|..|..|.|+|+++.+ +
T Consensus 1043 ~~v~v~G~v~~-~~~~~Tk~G~~maf~tle-----D~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~------~- 1109 (1220)
T 2hpi_A 1043 PKVLLSGMVEE-VVRKPTRSGGMMARFTLS-----DETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG------E- 1109 (1220)
T ss_dssp CEEEEEEEECC-C------------CEEEE-----ETTEEEEEC-------------CTTCEEEEEEEEC----------
T ss_pred CeEEEEEEEEE-EEEeecCCCCeEEEEEEE-----ECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC------C-
Confidence 35778888876 555677889999988886 3455699999999888888899999999999999742 1
Q ss_pred EEEEEEEEEEEEEEee
Q 025801 167 QQTYYKVVVQQLNFVE 182 (248)
Q Consensus 167 ~r~~~eIva~~I~~L~ 182 (248)
...|+|+++.-++
T Consensus 1110 ---~~~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1110 ---ELRVLAQAVWTLE 1122 (1220)
T ss_dssp -----CEEEEEEEEHH
T ss_pred ---CcEEEEeeeecHH
Confidence 2578888887764
No 45
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=82.29 E-value=2.2 Score=39.91 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=47.8
Q ss_pred ccEEEEEEEECCCceEEEcC--CCc-EEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEE
Q 025801 86 TNTVHLIGVVGTPIETKHLP--SGK-VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (248)
Q Consensus 86 mN~V~LiGrLg~dPelr~t~--nG~-~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeG 153 (248)
+++..|.|||..--++|... +|. .+..+.|+ + ++.-|++++|+++++.+...|+.|+.+.|++
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~--D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 78 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL--D---DSGEIKATGFNDAVDRFYPLLQENHVYLISK 78 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE--C---SSCEEEEEEETHHHHHHTTTCCTTCEEEEES
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEE--c---CCCEEEEEEeHHHHHHHHHheecCCEEEEcC
Confidence 47789999999766666543 232 45555554 2 2237999999999999999999999999997
No 46
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=82.08 E-value=5.2 Score=34.70 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=64.4
Q ss_pred cccCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHh---cCcCCEEEEEEEe
Q 025801 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQH---VEKGQQIYISGRL 155 (248)
Q Consensus 79 i~~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~---LkKGd~V~VeGrL 155 (248)
+=|..-.+++|.++|.|...-+.-...+|...-...+.+++.-.....+.|.+--.......-- ..-|..|.|.|.+
T Consensus 78 ~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i 157 (220)
T 3kf8_A 78 VLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEI 157 (220)
T ss_dssp EEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEE
T ss_pred EEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEE
Confidence 4456667999999999998433221112333334555566665556678888776543221111 2369999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEEEEEEeeCC
Q 025801 156 VSDVVESGDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 156 ~~~~y~dkdG~~r~~~eIva~~I~~L~~k 184 (248)
.... .+-+.......+|.|+.|.+++..
T Consensus 158 ~~~r-~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 158 YNWY-DSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp EECC-CSTTTTSCCCEEEEEEEEEEEESS
T ss_pred Eeec-cccccccccceEEEEEEEEEeccC
Confidence 8641 111222223449999999999754
No 47
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=79.79 E-value=12 Score=28.31 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=43.3
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEE-EEeee
Q 025801 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (248)
Q Consensus 86 mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~Ve-GrL~~ 157 (248)
...|.++|+|..-- ..+++..+....|+ ++|--|++++|++. ....++.|+.|.|+ |+.+.
T Consensus 15 ~~~v~v~~~V~~~~---~~~~~~~~~~~~l~-----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 15 GQWANLKAKVIQLW---ENTHESISQVGLLG-----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp TCEEEEEEEEEEEE---ECCCSSEEEEEEEE-----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeE---cCCCCeEEEEEEEE-----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEE
Confidence 57899999998732 23455555554444 45667999999943 23478999999999 67655
No 48
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=77.11 E-value=17 Score=34.98 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=54.7
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHH------HHHHHHhcCcCCEEEEEEEeeeeee
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL------AHVASQHVEKGQQIYISGRLVSDVV 160 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGkl------Ae~~~~~LkKGd~V~VeGrL~~~~y 160 (248)
..|.|.|+|.. +|.. |++++.+.|. +. +.-+.|++-.+. -+.+.+.|..||.|.|+|.+...
T Consensus 56 ~~V~v~Grv~~---~R~~--gkk~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t-- 123 (521)
T 3bju_A 56 ITLKVAGRIHA---KRAS--GGKLIFYDLR-GE----GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKT-- 123 (521)
T ss_dssp CCEEEEEEEEE---EEES--SSSEEEEEEE-ET----TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEEC--
T ss_pred cEEEEEEEEEE---EecC--CCCcEEEEEE-EC----CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEec--
Confidence 46999999977 5554 5345544444 22 346888775432 12234569999999999999764
Q ss_pred ecCCCcEEEEEEEEEEEEEEeeCC
Q 025801 161 ESGDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 161 ~dkdG~~r~~~eIva~~I~~L~~k 184 (248)
+.| .++|.|+++.+|.+.
T Consensus 124 --~~g----e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 124 --KKG----ELSIIPYEITLLSPC 141 (521)
T ss_dssp --TTC----CEEEEEEEEEEEECC
T ss_pred --CCC----CEEEEEeEEEEeecC
Confidence 345 379999999999754
No 49
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=74.43 E-value=32 Score=32.81 Aligned_cols=78 Identities=15% Similarity=0.293 Sum_probs=53.5
Q ss_pred EEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHH-HHH---HHHHhcCcCCEEEEEEEeeeeeeecC
Q 025801 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE-LAH---VASQHVEKGQQIYISGRLVSDVVESG 163 (248)
Q Consensus 88 ~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGk-lAe---~~~~~LkKGd~V~VeGrL~~~~y~dk 163 (248)
.|.|.|+|.. +|.. |+ ++.+.|. +. +..+.|++-.+ ..+ ...+.|..||.|.|+|.+... +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~----~ 122 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHIQ-DV----TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKT----K 122 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEEC----T
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-EC----CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeC----C
Confidence 6999999987 5544 54 4433333 32 23688877544 221 233679999999999999764 3
Q ss_pred CCcEEEEEEEEEEEEEEeeCC
Q 025801 164 DGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 164 dG~~r~~~eIva~~I~~L~~k 184 (248)
.| .++|.|+++.+|.+.
T Consensus 123 ~g----e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 VG----ELSIKVSSYEFLTKA 139 (493)
T ss_dssp TC----CEEEEEEEEEEEECC
T ss_pred CC----cEEEEEEEEEEcccc
Confidence 45 479999999999754
No 50
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=74.42 E-value=21 Score=33.40 Aligned_cols=83 Identities=16% Similarity=0.269 Sum_probs=52.6
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHH-HHHhcCcCCEEEEEEEeeeeeeecCCC
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHV-ASQHVEKGQQIYISGRLVSDVVESGDG 165 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~-~~~~LkKGd~V~VeGrL~~~~y~dkdG 165 (248)
..|.|.|+|.. +|.. |+.++.+.|. + .+..+.|++-.+..+. ....|..||.|.|+|.+..+ ++|
T Consensus 12 ~~V~v~Gwv~~---~R~~--Gk~~~Fi~Lr-D----~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~----~~~ 77 (435)
T 2xgt_A 12 ERVCIKGWIHR---MRRQ--GKSLMFFILR-D----GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEV----PEG 77 (435)
T ss_dssp SEEEEEEEEEE---EEEC--TTSEEEEEEE-C----SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEEC----C--
T ss_pred CEEEEEEEEEE---eccc--CCCcEEEEEE-E----CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEec----CCC
Confidence 46999999987 5543 4445545454 2 2335788775443211 11259999999999999764 222
Q ss_pred cE-EEEEEEEEEEEEEeeC
Q 025801 166 QQ-QTYYKVVVQQLNFVER 183 (248)
Q Consensus 166 ~~-r~~~eIva~~I~~L~~ 183 (248)
.. .-.++|.|+++.+|..
T Consensus 78 ~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 78 KEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp ----TTEEEEEEEEEEEEC
T ss_pred cCCCCcEEEEEEEEEEeec
Confidence 21 2248999999999975
No 51
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=70.80 E-value=12 Score=30.29 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=44.4
Q ss_pred CCccEEEEEEEECCCceEE---EcC--CC--------cEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEE
Q 025801 84 ELTNTVHLIGVVGTPIETK---HLP--SG--------KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIY 150 (248)
Q Consensus 84 ~~mN~V~LiGrLg~dPelr---~t~--nG--------~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~ 150 (248)
..++.++|+|+|...-+.+ ... +| ..++...|+ ++|--+++++|+++++ .++.||.|.
T Consensus 24 pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg-----DeTG~I~ftlW~e~~~----~l~~Gd~v~ 94 (145)
T 1wjj_A 24 PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG-----DETGCILFTARNDQVD----LMKPGATVI 94 (145)
T ss_dssp TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE-----CSSCEEEEEECTTHHH----HTCTTCEEE
T ss_pred CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE-----cCCcEEEEEEecCCcC----cCCCCCEEE
Confidence 3467899999998744433 221 23 256666665 6777899999998665 378999999
Q ss_pred EEEEe
Q 025801 151 ISGRL 155 (248)
Q Consensus 151 VeGrL 155 (248)
|.+-.
T Consensus 95 i~na~ 99 (145)
T 1wjj_A 95 LRNSR 99 (145)
T ss_dssp EEEEE
T ss_pred EeccE
Confidence 98643
No 52
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=68.73 E-value=42 Score=31.49 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=54.3
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHH----HHHHHHhcCcCCEEEEEEEeeeeeeec
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----AHVASQHVEKGQQIYISGRLVSDVVES 162 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGkl----Ae~~~~~LkKGd~V~VeGrL~~~~y~d 162 (248)
..|.|.|+|.. +|.. |+ ++.+.|. +. +..+.|++-.+. .-...+.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~Lr-D~----~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~--~ 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIR-DR----DGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP--K 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT--T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC--C
Confidence 57999999987 4543 43 4444443 22 335777776432 122345799999999999997642 1
Q ss_pred CCCcEEEEEEEEEEEEEEeeCCC
Q 025801 163 GDGQQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 163 kdG~~r~~~eIva~~I~~L~~k~ 185 (248)
..| .++|.|+++.+|....
T Consensus 84 ~~~----~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKL----GFEILPEKIVVLNRAE 102 (438)
T ss_dssp STT----SEEEEEEEEEEEECBC
T ss_pred CCC----cEEEEEEEEEEEecCC
Confidence 124 3899999999997643
No 53
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=68.09 E-value=52 Score=30.74 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=54.3
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHH----HHHHHhcCcCCEEEEEEEeeeeeeec
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELA----HVASQHVEKGQQIYISGRLVSDVVES 162 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklA----e~~~~~LkKGd~V~VeGrL~~~~y~d 162 (248)
..|.|.|+|.. +|.. |+ ++.+.|. + .+..+.|++-.+.. -...+.|..||.|.|+|.+....
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lr-D----~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~--- 82 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIR-D----STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE--- 82 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E----TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC---
Confidence 46999999987 5544 54 4444443 2 23458888754321 12336799999999999997652
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 025801 163 GDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 163 kdG~~r~~~eIva~~I~~L~~k 184 (248)
.|. -.++|.|+++.+|.+.
T Consensus 83 -~~~--~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 83 -RAP--GGAEVHVEKLEVIQAV 101 (434)
T ss_dssp -TSG--GGEEEEEEEEEEEECC
T ss_pred -CCC--ccEEEEEeEEEEeecC
Confidence 221 2479999999999764
No 54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=67.66 E-value=77 Score=30.59 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=53.1
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHH-H-H--HHHHhcCcCCEEEEEEEeeeeeeec
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-A-H--VASQHVEKGQQIYISGRLVSDVVES 162 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGkl-A-e--~~~~~LkKGd~V~VeGrL~~~~y~d 162 (248)
..|.|.|+|-. .|.. |+ ++.+.|. +. +.-+.|++-.+. . + ...+.|..||.|.|+|.+...
T Consensus 87 ~~V~v~GwV~~---~R~~--Gk-~~Fi~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t---- 151 (529)
T 4ex5_A 87 LEVAIAGRMML---KRVM--GK-ASFATVQ-DG----SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRT---- 151 (529)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-CS----SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEEC----
T ss_pred cEEEEEEEEEe---eecC--CC-eEEEEEE-eC----CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEc----
Confidence 46999999987 4544 54 4434343 22 236777665432 1 1 234569999999999999652
Q ss_pred CCCcEEEEEEEEEEEEEEeeCC
Q 025801 163 GDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 163 kdG~~r~~~eIva~~I~~L~~k 184 (248)
+.| .++|.|++|.+|.+.
T Consensus 152 ~~g----elel~~~~i~vLs~a 169 (529)
T 4ex5_A 152 NKG----ELSVKCTQLRLLAKA 169 (529)
T ss_dssp TTS----CEEEEEEEEEEEECC
T ss_pred CCC----cEEEEEEEEEEEecC
Confidence 445 479999999999754
No 55
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=67.07 E-value=12 Score=32.59 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=54.0
Q ss_pred cccCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCce-EEEEEEeHHHHH--HHHHhcCcCCEEEEEEEe
Q 025801 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDELAH--VASQHVEKGQQIYISGRL 155 (248)
Q Consensus 79 i~~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~-wi~V~awGklAe--~~~~~LkKGd~V~VeGrL 155 (248)
.......++.|.++|.|.. +. .+..++.|+|. +.|- -|.|..|....+ .-...++.|+.|.|.|++
T Consensus 64 f~i~g~~i~~V~ivG~V~~---i~---~~~~~~~~~L~-----D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v 132 (270)
T 2pi2_A 64 FRIGNVEISQVTIVGIIRH---AE---KAPTNIVYKID-----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 132 (270)
T ss_dssp EEETTEEESEEEEEEEEEE---EE---ECSSEEEEEEE-----CSSSSCEEEEEECC-------CCCCCTTCEEEEEEEE
T ss_pred EEECCEEEEEEEEEEEEEE---EE---eccceEEEEEE-----CCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEE
Confidence 3445566888999999876 21 23467777775 3454 689999976432 123568999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEEEEEEee
Q 025801 156 VSDVVESGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 156 ~~~~y~dkdG~~r~~~eIva~~I~~L~ 182 (248)
+. | +|++ .|.+..|..++
T Consensus 133 ~~--f---~g~~----qi~i~~ir~v~ 150 (270)
T 2pi2_A 133 RS--F---QNKK----SLVAFKIMPLE 150 (270)
T ss_dssp EE--E---TTEE----EEEEEEEEECS
T ss_pred Ee--c---CCee----EEEEEEEEecC
Confidence 86 4 2433 45566666543
No 56
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=65.89 E-value=14 Score=32.07 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=41.3
Q ss_pred ceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeee--cCCCcEEEEEEEEEEEEEEee
Q 025801 124 TSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVE--SGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 124 t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~--dkdG~~r~~~eIva~~I~~L~ 182 (248)
.--+.|.+.+++. +.++.||+|.|.|-++..... .+.+...+.+-|.|.+|..++
T Consensus 210 Prsi~v~l~~dLv----d~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 210 PRQLEIILEDDLV----DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCEEEEEEEGGGT----TSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CcEEEEEEccCcc----CcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 4578899999864 467999999999999876543 224455677888888888774
No 57
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=65.18 E-value=29 Score=33.81 Aligned_cols=86 Identities=13% Similarity=0.043 Sum_probs=56.2
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeH-----HHHHHHHHhcCcCCEEEEEEEeeeeeee
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-----ELAHVASQHVEKGQQIYISGRLVSDVVE 161 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awG-----klAe~~~~~LkKGd~V~VeGrL~~~~y~ 161 (248)
..|.|.|+|.+ .|.. | .++.+.|. + .+..+.|++-. +......+.|..|+.|.|+|.+....-.
T Consensus 63 ~~V~v~Gwv~~---~R~~--g-kl~Fi~Lr-D----~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 131 (548)
T 3i7f_A 63 KTVTIRARVQA---VRGK--G-NMVFLFLR-K----GIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKP 131 (548)
T ss_dssp CEEEEEEEEEE---EEEC--S-SEEEEEEE-E----TTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSC
T ss_pred CEEEEEEEEEE---EecC--C-CeEEEEEE-E----CCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcc
Confidence 57999999976 5543 4 35545554 2 23367777753 1222345679999999999999775321
Q ss_pred cCCCcEEEEEEEEEEEEEEeeCC
Q 025801 162 SGDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 162 dkdG~~r~~~eIva~~I~~L~~k 184 (248)
..+.+.-.++|.|++|.+|...
T Consensus 132 -~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 132 -IEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp -CTTSSSCSEEEEEEEEEEEECC
T ss_pred -cccCCCCcEEEEEeEEEEEecC
Confidence 1122234589999999999765
No 58
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=64.89 E-value=40 Score=27.42 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=55.4
Q ss_pred cCCCCccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHH---HHHHHHhcCcCCEEEEEEEeee
Q 025801 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL---AHVASQHVEKGQQIYISGRLVS 157 (248)
Q Consensus 81 ~~~~~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGkl---Ae~~~~~LkKGd~V~VeGrL~~ 157 (248)
|..-.++.|.|+|.|..- ... . + . ....+++. ...-++|++|-+. +......+..|+.|.|.|.++.
T Consensus 42 ~~n~PI~~V~IvGiVv~~---~~~-~-~-~--~~ytIDD~--TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~ 111 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAAI---DIY-E-G-K--HVLTVDDC--SGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINS 111 (159)
T ss_dssp ETTEEECEEEEEEEEEEE---EEE-T-T-E--EEEEEECS--SSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEEC
T ss_pred ECCeEEEEEEEEEEEEEE---EEe-C-C-E--EEEEEecC--CCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEe
Confidence 555678999999999882 221 1 1 2 23333332 1237999999764 2233445889999999999976
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeeC
Q 025801 158 DVVESGDGQQQTYYKVVVQQLNFVER 183 (248)
Q Consensus 158 ~~y~dkdG~~r~~~eIva~~I~~L~~ 183 (248)
. . |+ .+|.++.|..++.
T Consensus 112 f--r---~~----rqI~~~~i~~v~d 128 (159)
T 3kf6_A 112 F--R---SE----VELIAQSFEELRD 128 (159)
T ss_dssp S--S---SS----CEEEEEEEEEECS
T ss_pred e--C---CE----EEEEEEEEEECCC
Confidence 4 2 22 3788999999863
No 59
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=62.63 E-value=34 Score=32.81 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=53.0
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHH-H----HHHHHHhcCcCCEEEEEEEeeeeeee
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE-L----AHVASQHVEKGQQIYISGRLVSDVVE 161 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGk-l----Ae~~~~~LkKGd~V~VeGrL~~~~y~ 161 (248)
..|.|.|+|.. +|.. |+ ++.+.|. +. +..+.|++-.+ . -+...+.|..||.|.|+|.+...
T Consensus 65 ~~V~v~Gwv~~---~R~~--gk-~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~--- 130 (504)
T 1e1o_A 65 IEVSVAGRMMT---RRIM--GK-ASFVTLQ-DV----GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT--- 130 (504)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEEC---
T ss_pred CEEEEEEEEEE---EecC--CC-cEEEEEE-EC----CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEec---
Confidence 36999999987 5544 44 3433333 22 23577776433 1 11133679999999999999764
Q ss_pred cCCCcEEEEEEEEEEEEEEeeCC
Q 025801 162 SGDGQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 162 dkdG~~r~~~eIva~~I~~L~~k 184 (248)
+.| .++|.|+++.+|.+.
T Consensus 131 -~~g----e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 131 -QTG----ELSIHCTELRLLTKA 148 (504)
T ss_dssp -TTC----CEEEEEEEEEEEECC
T ss_pred -CCc----eEEEEEEEEEEeccc
Confidence 345 479999999999754
No 60
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=62.25 E-value=54 Score=30.55 Aligned_cols=74 Identities=12% Similarity=0.268 Sum_probs=51.4
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcC-cCCEEEEEEEeeeeeeecCCC
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVE-KGQQIYISGRLVSDVVESGDG 165 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~Lk-KGd~V~VeGrL~~~~y~dkdG 165 (248)
..|.|.|+|.+ +|.. |+ ++.+.|. + .+..+.|++-. +.|. .||.|.|+|.+.... .|
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D----~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~----~~ 71 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQFLLLR-D----RSGVVQVVTGG-------LKLPLPESALRVRGLVVENA----KA 71 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EEEEEEE-E----TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECT----TS
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecC----CC
Confidence 47999999987 5554 54 4444443 2 23347776643 5699 999999999997652 22
Q ss_pred cEEEEEEEEEEEEEEeeCC
Q 025801 166 QQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 166 ~~r~~~eIva~~I~~L~~k 184 (248)
. -.++|.|+++.+|.+.
T Consensus 72 ~--~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 72 P--GGLEVQAKEVEVLSPA 88 (422)
T ss_dssp T--TSEEEEEEEEEEEECC
T ss_pred C--ccEEEEEeEEEEeccC
Confidence 1 2479999999999754
No 61
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=61.90 E-value=45 Score=31.15 Aligned_cols=80 Identities=15% Similarity=0.187 Sum_probs=53.2
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHH--HHHHHHHhcCcCCEEEEEEEeeeeeeecCC
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE--LAHVASQHVEKGQQIYISGRLVSDVVESGD 164 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGk--lAe~~~~~LkKGd~V~VeGrL~~~~y~dkd 164 (248)
..|.|.|+|.. +|.. |+ ++.+.|. + .+..+.|++-.+ ..+. .+.|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D----~~g~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v~~~~----~ 80 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILR-D----KTGLGQVVVDKNSSAFGI-SQELTQESVIQVRGIVKADK----R 80 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E----TTEEEEEEECTTSTTHHH-HTTCCTTCEEEEEEEEEECS----S
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E----CCeeEEEEEeCChHHHHH-HHhCCCCCEEEEEEEEEecC----C
Confidence 46999999987 5544 44 4434443 2 233477776432 1222 36799999999999997652 2
Q ss_pred CcEEEEEEEEEEEEEEeeCC
Q 025801 165 GQQQTYYKVVVQQLNFVERS 184 (248)
Q Consensus 165 G~~r~~~eIva~~I~~L~~k 184 (248)
|. -.++|.|+++.+|.+.
T Consensus 81 ~~--~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 81 AP--RGIELHAEEITLLSKA 98 (429)
T ss_dssp SG--GGEEEEEEEEEEEECC
T ss_pred CC--ccEEEEEeEEEEeccC
Confidence 21 2479999999999765
No 62
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=61.48 E-value=30 Score=32.74 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=54.8
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeH-HHHH-HHHHhcCcCCEEEEEEEeeeeeeecC
Q 025801 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-ELAH-VASQHVEKGQQIYISGRLVSDVVESG 163 (248)
Q Consensus 86 mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awG-klAe-~~~~~LkKGd~V~VeGrL~~~~y~dk 163 (248)
-..|.|.|+|.. +|. .|+.++.+.|. + .+..+.|++-. +..+ .....|..|+.|.|+|.+....-...
T Consensus 30 g~~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr-D----~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 99 (456)
T 3m4p_A 30 GKLVTFKGWAYH---IRK--ARKTLIFVELR-D----GSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNH 99 (456)
T ss_dssp SSEEEEEEEEEE---EEC--CSSSEEEEEEE-C----SSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSC
T ss_pred CCEEEEEEEEEE---Eec--CCCceEEEEEE-e----CCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCccc
Confidence 457999999976 443 35545555554 2 22357777765 2211 12346999999999999976421100
Q ss_pred CC--cEEEEEEEEEEEEEEeeCCC
Q 025801 164 DG--QQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 164 dG--~~r~~~eIva~~I~~L~~k~ 185 (248)
+- .+.-.++|.|+++.+|....
T Consensus 100 ~~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 100 PPEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp CCSCTTBCSSEEEEEEEEEEECCC
T ss_pred CcccCCCCcEEEEEeEEEEEecCC
Confidence 00 00024799999999997543
No 63
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=61.09 E-value=25 Score=29.59 Aligned_cols=63 Identities=16% Similarity=0.264 Sum_probs=40.1
Q ss_pred cEEEEEEEECCCceEE--EcC-CCcEEEEEEEEEecCCCCce-EEEEEEeHHHHHHHHHhcCcCCEEEEEEE
Q 025801 87 NTVHLIGVVGTPIETK--HLP-SGKVLAWTRLAVRKSATQTS-WINLTFWDELAHVASQHVEKGQQIYISGR 154 (248)
Q Consensus 87 N~V~LiGrLg~dPelr--~t~-nG~~va~fsLAv~r~~~~t~-wi~V~awGklAe~~~~~LkKGd~V~VeGr 154 (248)
.-|.++|.|..--+++ ..+ +|+....-.+...+ ++. -++|++||+.|+.+. ...|+.|.+.|-
T Consensus 139 ~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D---~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~ 205 (246)
T 1jmc_A 139 SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMD---TSGKVVTATLWGEDADKFD--GSRQPVLAIKGA 205 (246)
T ss_dssp CEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEEC---TTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEE
T ss_pred CceeEEEEEEEecCeEEEEEecCCCccEEEEEEEEC---CCCCEEEEEEEchhhhhcc--cCCCCEEEEEEE
Confidence 3588999987533332 223 46654444443333 233 599999999998754 578888877764
No 64
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=60.47 E-value=18 Score=35.37 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=54.0
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHH-HHHHHHhcCcCCEEEEEEEeeeeeeecCCC
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-AHVASQHVEKGQQIYISGRLVSDVVESGDG 165 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGkl-Ae~~~~~LkKGd~V~VeGrL~~~~y~dkdG 165 (248)
..|.|.|+|.+ .|.. |+ ++.+.|. ++ +..+.|++-.+. +-...+.|..|+.|.|+|.+..+. ..+.
T Consensus 17 ~~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D~----~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~--~~~~ 83 (580)
T 1l0w_A 17 EEVVLEGWVNR---RRDL--GG-LIFLDLR-DR----EGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRP--EPNP 83 (580)
T ss_dssp CEEEEEEEEEE---EEEC--SS-CEEEEEE-ET----TEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECS--SCCT
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCC--CcCc
Confidence 46999999977 5544 43 4434443 22 335777664331 111346699999999999998764 1111
Q ss_pred c-EEEEEEEEEEEEEEeeCCC
Q 025801 166 Q-QQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 166 ~-~r~~~eIva~~I~~L~~k~ 185 (248)
+ +.-.++|.|+++.+|....
T Consensus 84 ~~~~ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 84 RLATGRVEVELSALEVLAEAK 104 (580)
T ss_dssp TSTTTTEEEEEEEEEEEECCC
T ss_pred cCCCccEEEEEeEEEEeccCc
Confidence 1 1123899999999998653
No 65
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=57.24 E-value=29 Score=33.80 Aligned_cols=84 Identities=18% Similarity=0.312 Sum_probs=54.4
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHH--HHHHhcCcCCEEEEEEEeeeeeee--c
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAH--VASQHVEKGQQIYISGRLVSDVVE--S 162 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe--~~~~~LkKGd~V~VeGrL~~~~y~--d 162 (248)
..|.|.|+|.+ .|.. |+ ++.+.|. ++ +..+.|++-.+..+ ...+.|..|+.|.|+|.+..+.-. +
T Consensus 16 ~~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D~----~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n 84 (585)
T 1c0a_A 16 QQVTLCGWVNR---RRDL--GS-LIFIDMR-DR----EGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNIN 84 (585)
T ss_dssp CEEEEEEEEEE---EEEC--SS-CEEEEEE-ET----TEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCC
T ss_pred CEEEEEEEEEE---EecC--CC-cEEEEEE-EC----CeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccc
Confidence 46999999977 5544 43 4434443 22 33577777543222 234579999999999999765221 1
Q ss_pred ---CCCcEEEEEEEEEEEEEEeeCCC
Q 025801 163 ---GDGQQQTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 163 ---kdG~~r~~~eIva~~I~~L~~k~ 185 (248)
+.| .++|.|+++.+|....
T Consensus 85 ~~~~~g----eiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 85 RDMATG----EIEVLASSLTIINRAD 106 (585)
T ss_dssp TTSTTT----TEEEEEEEEEEEECCC
T ss_pred ccCCCc----cEEEEEeEEEEEeccC
Confidence 233 3899999999998653
No 66
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=48.68 E-value=15 Score=29.60 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=43.1
Q ss_pred CccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCC------------CCceE--------EEEEEeHHHHHHHHHhcC
Q 025801 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------------TQTSW--------INLTFWDELAHVASQHVE 144 (248)
Q Consensus 85 ~mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~------------~~t~w--------i~V~awGklAe~~~~~Lk 144 (248)
...-+-|+|.|.+.+. . ++ .+.|.|.++- .++.| ++|++|+.-|..+.++|+
T Consensus 13 ~~~F~Dl~~qVv~~~~---~-~~----~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk 84 (143)
T 4hik_A 13 PHQRCSFYAQVIKTWY---S-DK----NFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIK 84 (143)
T ss_dssp SSCEEEEEEEEEEEEE---C-SS----CEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCC
T ss_pred CCCeEEEEEEEEEEEc---C-CC----eEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCC
Confidence 3566789999988432 1 23 4667776641 11234 799999999999999999
Q ss_pred cCCEEEEE
Q 025801 145 KGQQIYIS 152 (248)
Q Consensus 145 KGd~V~Ve 152 (248)
.||.|.+.
T Consensus 85 ~Gd~v~L~ 92 (143)
T 4hik_A 85 EGDYVVMK 92 (143)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99999875
No 67
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=41.96 E-value=26 Score=29.62 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=46.1
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeeecCCCc
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQ 166 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~dkdG~ 166 (248)
....++|-|+..-+.+.+.+|+.+..+.|..=. +....+.+-+||+..+. ...+..|+.|.|- ....+.+++|.
T Consensus 56 ~dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~--~~~~~V~lfLFg~a~~~-~~k~~~G~ViaiL---NP~i~~~~~~~ 129 (200)
T 3ebe_A 56 EDWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK--DLDKYISLFLFGDVHKE-HWKTDQGTVIGLL---NANPMKPKEGT 129 (200)
T ss_dssp SCEEEEEEEEEEECC-------CCEEEEEECSS--STTCCEEEEECHHHHHH-HTTCCTTEEEEEE---SCEECCCCTTC
T ss_pred CCEEEEEEEEecCCccCcCCCCeEEEEEEEecC--CCCcEEEEEEechHHHH-hcCcCCceEEEEE---CCEEccCCCCC
Confidence 357788999988888888899988877775211 12345899999986666 4458999999874 44445545443
No 68
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=38.63 E-value=38 Score=29.52 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=38.8
Q ss_pred ceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeeecCCCcEEEEEEEEEEEEEEeeC
Q 025801 124 TSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVER 183 (248)
Q Consensus 124 t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~dkdG~~r~~~eIva~~I~~L~~ 183 (248)
.--+.|.+.+++. +.++.||+|.|.|-++... . .+...+.+-|.|.+|...+.
T Consensus 197 Prsi~V~l~~dLv----d~~~PGDrV~vtGI~~~~~-~--~~~~~~~~~l~a~~I~~~~~ 249 (279)
T 1ltl_A 197 PRQITVVLEDDLV----DTLTPGDIVRVTGTLRTVR-D--ERTKRFKNFIYGNYTEFLEQ 249 (279)
T ss_dssp CCEEEEEEEGGGT----TCCCTTCEEEEEEEEEEEE-E--TTTTEEEEEEEEEECCBC--
T ss_pred CeEEEEEEccccc----CccCCCCEEEEEEEEEEee-C--CCCceEEEEEEEEEEEEecC
Confidence 4578899999864 4689999999999998763 2 33445777778887776643
No 69
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=36.04 E-value=43 Score=30.98 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=39.4
Q ss_pred cEEEEEEEECCCceEEE--cC-CCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHH--hcCcCCEEEEEEE
Q 025801 87 NTVHLIGVVGTPIETKH--LP-SGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQ--HVEKGQQIYISGR 154 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~--t~-nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~--~LkKGd~V~VeGr 154 (248)
..|.++|.|..-=+++. .+ +|+....-.+...+ ....-++|++||+.|+.+.. ....|+.|.|.|-
T Consensus 134 ~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D--~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~ 204 (444)
T 4gop_C 134 QQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVD--QGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGV 204 (444)
T ss_dssp CCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEEC--TTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESC
T ss_pred CceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEe--CCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeE
Confidence 34778888876333332 22 46533333333322 12236999999999987542 2678888887773
No 70
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=29.95 E-value=96 Score=23.98 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeeecCCCcEEEE
Q 025801 106 SGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTY 170 (248)
Q Consensus 106 nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~dkdG~~r~~ 170 (248)
..+++.+|.+.-...+...-|.--.+|= -..+.-||.|.|.||++.. .+|++.++
T Consensus 23 G~KkviS~p~~~~e~g~~~k~~ygsaf~------pd~v~~GDivTvsgri~~k----e~G~y~ny 77 (119)
T 2wkd_A 23 GDKKIISVPLFEKEKGSNVKVAYGSAFM------PDFIQMGDTVTVSGRVQAK----ESGEYVNY 77 (119)
T ss_dssp SCEEEEEEESSCCC----CCCCEEEEEC------CTTCCTTCEEEEEEEEEEC----------CE
T ss_pred CceeEEEEeeeecccCCceeeEEEEEec------cccccCCcEEEEeceeeee----ccCceEee
Confidence 3457777766544433344565556664 3678999999999999875 35665443
No 71
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=24.63 E-value=61 Score=28.33 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=45.9
Q ss_pred ccEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeeeee
Q 025801 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVE 161 (248)
Q Consensus 86 mN~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~y~ 161 (248)
-..|.++|-|..--..+.+++..-.+.|+|.-... . -+.|.+|.+..+.+=.-.+.||.|.+.. ++.+.|.
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~-~---gl~v~iF~~~~~~LP~v~~~GDII~l~~-vki~~~~ 85 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN-V---KLTCLLFSGNYEALPIIYKNGDIVRFHR-LKIQVYK 85 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC-C---EEEEEEEESSGGGSCCCCSTTCEEEEEE-EEEEEET
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC-C---CEEEEEECCChHHCCCCCCCCCEEEEEE-EEEEEEC
Confidence 45789999996543344444445777777764332 2 2999999875555443349999998884 3444563
No 72
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=22.49 E-value=99 Score=25.07 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=52.9
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecC-------CCCceEEEEEEeHHHHHHHHHhcCcCCEEEEEEEeeeee
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS-------ATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDV 159 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~-------~~~t~wi~V~awGklAe~~~~~LkKGd~V~VeGrL~~~~ 159 (248)
.+|.|-|++.- +....+ ..+..|-|.---. ......|.|..=... +.-.--+.|.|+|+|+...
T Consensus 55 k~VripGfvvP---Le~~~~-~~vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~-----~~~~l~~pvwV~G~L~~~~ 125 (150)
T 4hsp_A 55 IEAKLPGYIVP---LEISEA-GLVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGV-----QMDELYQPFWVEGTFKVEN 125 (150)
T ss_dssp EEEEEEEEEEE---EEECTT-SEEEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEE-----ESTTTTSCEEEEEEEECCC
T ss_pred CEEEeccEEEE---eccCCC-CcEEEEEEeCCCCcCcCCCCCCCceEEEEECCCCc-----cchhccceEEEEEEEEEee
Confidence 56899999974 433322 3578887762221 134566766532211 1112238999999999999
Q ss_pred eecCCCcEEEEEEEEEEEEEEee
Q 025801 160 VESGDGQQQTYYKVVVQQLNFVE 182 (248)
Q Consensus 160 y~dkdG~~r~~~eIva~~I~~L~ 182 (248)
+++. --...|.+.++.|+-.+
T Consensus 126 ~~~~--l~~~~Y~m~a~~i~~y~ 146 (150)
T 4hsp_A 126 ASSE--LAAAGYRMQASKVTPYE 146 (150)
T ss_dssp EECS--SCEESEEEEEEEEEECC
T ss_pred eccc--ceeEEeEEeeeEEEEec
Confidence 8743 44577788888887653
No 73
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=20.69 E-value=77 Score=31.26 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=50.8
Q ss_pred cEEEEEEEECCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeHH----HHHHHHHhcCcCCEEEEEEEeeeeeeec
Q 025801 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE----LAHVASQHVEKGQQIYISGRLVSDVVES 162 (248)
Q Consensus 87 N~V~LiGrLg~dPelr~t~nG~~va~fsLAv~r~~~~t~wi~V~awGk----lAe~~~~~LkKGd~V~VeGrL~~~~y~d 162 (248)
..|.|.|+|..- | +.. |-. .++. +..+.|++-.+ .+-...+.|..|+.|.|+|.+..+.-..
T Consensus 25 ~~V~l~GwV~~~---R---~~~----Fi~-LrD~---~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~ 90 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----FLV-LRDF---DGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQ 90 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----EEE-EECS---SCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTC
T ss_pred CEEEEEEEeeee---c---CeE----EEE-EEeC---CcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccc
Confidence 479999999862 2 221 222 2222 23566665432 1223456799999999999997652110
Q ss_pred CCCcE-EEEEEEEEEEEEEeeCCC
Q 025801 163 GDGQQ-QTYYKVVVQQLNFVERSS 185 (248)
Q Consensus 163 kdG~~-r~~~eIva~~I~~L~~k~ 185 (248)
.+.+. .-.++|.|++|++|....
T Consensus 91 ~n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 91 ENPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp CCTTSTTTTEEEEEEEEEEEECBC
T ss_pred cCccCCCCcEEEEEeEEEEeecCC
Confidence 11111 113799999999997654
Done!