BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025802
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
           thaliana GN=At3g15000 PE=1 SV=1
          Length = 395

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 105/131 (80%), Gaps = 2/131 (1%)

Query: 56  SPLNDPSPNWSNRPPKETIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGS 115
           S LNDP+PNWSNRPPKETI+LDGCD++HWL+V+E P   E + +E+I++Y+KTLA +VGS
Sbjct: 72  SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQ-GEPTRDEIIDSYIKTLAQIVGS 130

Query: 116 EEEAKKKIYSVCTTTYTGFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVD 175
           E+EA+ KIYSV T  Y  FGAL+ E+LS+K+K    V WVLPDSY+DV NKDYGG+ F+D
Sbjct: 131 EDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFID 190

Query: 176 GKVI-HRPQYR 185
           GK + + P+Y 
Sbjct: 191 GKAVPYDPKYH 201


>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
          Length = 230

 Score =  158 bits (399), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 100/142 (70%), Gaps = 7/142 (4%)

Query: 73  TIMLDGCDYQHWLIVMEFPNPSELSEEEMINAYVKTLAAVVGSEEEAKKKIYSVCTTTYT 132
           TIML GCDY HWLIVMEFP     + E+MI+ Y+ TLA V+GS EEAKK +Y+  TTTYT
Sbjct: 78  TIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYT 137

Query: 133 GFGALIDEELSYKVKGQPGVLWVLPDSYIDVPNKDYGGDLFVDGKVI------HRP-QYR 185
           GF   + EE S K KG PGVLWVLPDSYIDV NKDYGGD +V+G++I      ++P Q R
Sbjct: 138 GFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSR 197

Query: 186 FTERQQRPRTRRRETTQADRRR 207
            ++ + +   R+R+   A++RR
Sbjct: 198 SSKYKSKAYVRQRDGPPAEQRR 219


>sp|P20821|GCSH_BOVIN Glycine cleavage system H protein, mitochondrial OS=Bos taurus
           GN=GCSH PE=1 SV=1
          Length = 173

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 30  LNKQQPQIGPDPICNPARFKTSGSSYSPLNDPSPNWSNRPPKET--IMLDGCDYQHWLIV 87
           LNKQ+     + +      K +   YSPL+       N+   E   ++   C    WLI 
Sbjct: 94  LNKQEEFGALESV------KAASELYSPLSGEVTE-INKALAENPGLVNKSCYEDGWLIK 146

Query: 88  MEFPNPSELSE---EEMINAYVKTL 109
           M F NPSEL E   EE    Y+K++
Sbjct: 147 MTFSNPSELDELMSEEAYEKYIKSI 171


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,342,090
Number of Sequences: 539616
Number of extensions: 4614190
Number of successful extensions: 9877
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9793
Number of HSP's gapped (non-prelim): 73
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)