BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025803
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P96554|Y319_MYXXA Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus
PE=3 SV=1
Length = 319
Score = 198 bits (504), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 153/231 (66%), Gaps = 3/231 (1%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SLSVDN+FVFV+IF ++P +YQ+RVL +GI A+ R +I G A L RF
Sbjct: 77 YLIEKSLSVDNIFVFVVIFSALRIPALYQHRVLFWGILSALALRAIMIFAGVAMLARFHW 136
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ V G L+ + KLF + + + +++ +R IP T +DG+ FFT ++G + A
Sbjct: 137 LIYVFGGFLIITGVKLFLQRNKEDNPEEGALMRLARRTIPSTPNFDGHHFFTVENGRKLA 196
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPLL+ + ++E SDI FA+DSIPA+F VT DPFIVF+SN+FAILGLRS+F +++ +
Sbjct: 197 TPLLMALLLVEASDILFALDSIPAIFAVTTDPFIVFTSNIFAILGLRSMFFMLAGAVEKF 256
Query: 196 EYLQPSIAVVLGFIGCKM-ILDYFGFHISTEASLSFVATSLSAGVLLSLMK 245
YL+ ++ VL F+G KM I+D+ + E SLS +A L A ++ SL+K
Sbjct: 257 SYLKVGLSAVLVFVGTKMAIIDF--VKMPPEVSLSVIAGLLGASIVASLIK 305
>sp|P42601|ALX_ECOLI Inner membrane protein alx OS=Escherichia coli (strain K12) GN=alx
PE=1 SV=2
Length = 321
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SL+VDN+FV++++F YF VP Q RVL YG+ GAIV R +I G+ + +F+
Sbjct: 83 YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ + LLF+ K+ + ED++ + D +V+ + + +T D FF ++G+ A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262
Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
L+ +AV+L FIG KM++ F +HI SL V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297
>sp|Q83Q35|ALX_SHIFL Inner membrane protein alx OS=Shigella flexneri GN=alx PE=3 SV=1
Length = 320
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SL+VDN+FV++++F YF VP Q RVL YG+ GAIV R +I G+ + +F+
Sbjct: 83 YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ + LLF+ K+ + ED++ + D +V+ + + +T D FF ++G+ A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262
Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
L+ +AV+L FIG KM++ F +HI SL V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297
>sp|Q8FDE1|ALX_ECOL6 Inner membrane protein alx OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=alx PE=3 SV=1
Length = 321
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SL+VDN+FV++++F YF VP Q RVL YG+ GAIV R +I G+ + +F+
Sbjct: 83 YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ + LLF+ K+ + ED++ + D +V+ + + +T D FF ++G+ A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262
Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
L+ +AV+L FIG KM++ F +HI SL V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297
>sp|Q8XAJ0|ALX_ECO57 Inner membrane protein alx OS=Escherichia coli O157:H7 GN=alx PE=3
SV=1
Length = 321
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SL+VDN+FV++++F YF VP Q RVL YG+ GAIV R +I G+ + +F+
Sbjct: 83 YLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ + LLF+ K+ + ED++ + D +V+ + + +T D FF ++G+ A
Sbjct: 143 ILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPL+L + ++ELSD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++
Sbjct: 203 TPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERF 262
Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
L+ +AV+L FIG KM++ F +HI SL V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAVSLGVV 297
>sp|P60067|ALX_PHOLL Inner membrane protein alx OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=alx PE=3 SV=1
Length = 320
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 148/229 (64%), Gaps = 3/229 (1%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y+LE++L+VDN+FV++++F YF +P Q RVL YG+ GAIV R +I G+ + +F
Sbjct: 83 YLLEKALAVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLRTVMIFAGSWLVSQFSW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ + LL + K+ +EDD+ + D V+ + I +T G RFF + G+ A
Sbjct: 143 ILYLFGLFLLVTGVKMALVKEDDSPIGDKPFVRWLKAHIRITDNLHGERFFVKEKGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPL+L + ++E+SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L++
Sbjct: 203 TPLILVLILVEISDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAEKF 262
Query: 196 EYLQPSIAVVLGFIGCKM-ILDYFGFHISTEASLSFVATSLSAGVLLSL 243
L+ ++V+L FIG KM I+D+ +HI SL VA+ L+ +++++
Sbjct: 263 TMLKYGLSVILAFIGIKMLIIDF--YHIPIGGSLGAVASILAVTMIINV 309
>sp|Q8Z3L5|ALX_SALTI Inner membrane protein alx OS=Salmonella typhi GN=alx PE=3 SV=1
Length = 322
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SL+VDN+FV++++F YF VP Q RVL YG+ GAIV R +I GT + +FE
Sbjct: 83 YLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ V LLF+ K+ ++ED++ + + +V+ + + +T + FF ++G+ A
Sbjct: 143 LLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L+S
Sbjct: 203 TPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERF 262
Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
L+ +AV+L FIG KM++ F +HI SL V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAISLGVV 297
>sp|Q8ZLX2|ALX_SALTY Inner membrane protein alx OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=alx PE=3 SV=1
Length = 322
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 141/216 (65%), Gaps = 1/216 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y++E+SL+VDN+FV++++F YF VP Q RVL YG+ GAIV R +I GT + +FE
Sbjct: 83 YLIEKSLAVDNVFVWLMLFSYFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEW 142
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKA 135
+ V LLF+ K+ ++ED++ + + +V+ + + +T + FF ++G+ A
Sbjct: 143 LLYVFGAFLLFTGVKMALAKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYA 202
Query: 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL 195
TPLLL + ++E SD+ FAVDSIPA+F VT DPFIV +SNLFAILGLR+++ L+S
Sbjct: 203 TPLLLVLIMVEFSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERF 262
Query: 196 EYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFV 231
L+ +AV+L FIG KM++ F +HI SL V
Sbjct: 263 SMLKYGLAVILVFIGIKMLIVDF-YHIPIAISLGVV 297
>sp|Q4UK32|Y1252_RICFE Uncharacterized membrane protein RF_1252 OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=RF_1252 PE=3 SV=2
Length = 301
Score = 164 bits (414), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 151/241 (62%), Gaps = 1/241 (0%)
Query: 7 RQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 66
E Y +++E+++S+DN+FV +IF++FK+P YQ+RVL +GI G I+FR +I G
Sbjct: 58 EHAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPGKYQHRVLFFGIIGVIIFRAIMIYGG 117
Query: 67 TATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFF 126
T + +F + + A IL+ + K F D+ +++I K+ + + +T +G++F
Sbjct: 118 TILINKFAWLLYIFAVILIATGIKTFYVSHKTFDIQNSYIYKSIVKNLNITPNLEGDKFV 177
Query: 127 TNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFT 186
++ TPL +++ +IE D+ FA+DSIPA+F +T D +I+++SN+FAILGLR+LF
Sbjct: 178 VKRNNKLYFTPLFISLVLIEAIDLVFAIDSIPAIFAITNDVYIIYTSNIFAILGLRALFF 237
Query: 187 LISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKK 246
++E + Y++ S+A++L FIG K+ + ++ I SL T L G++ S+++K
Sbjct: 238 CLAEIVERFSYIKYSLALILIFIGFKIFIHHY-IAIPAYVSLIVTITLLLFGIIASIIRK 296
Query: 247 S 247
+
Sbjct: 297 N 297
>sp|Q1RKF1|Y082_RICBR Uncharacterized membrane protein RBE_0082 OS=Rickettsia bellii
(strain RML369-C) GN=RBE_0082 PE=3 SV=1
Length = 302
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 152/240 (63%), Gaps = 1/240 (0%)
Query: 8 QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
T E Y +++E+++S+DN+FV +IF++FK+P YQ+RVL +GI G I FR +I G
Sbjct: 59 STREYYTCFLIEKAMSLDNIFVISIIFQFFKIPQKYQHRVLFFGIIGVIAFRAVMIYGGI 118
Query: 68 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
+ +F + + A IL+ + K F D+ ++++ K+ +++ VT +G++FF
Sbjct: 119 ILINKFSWLLYIFAVILIATGVKTFYVSHKTFDIQNSYLYKSIIKYLNVTPNLEGDKFFV 178
Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
++ TPL +++ +IE D+ FA+DSIPA+F +T D +I+++SN+FAILGLR+LF
Sbjct: 179 TRNKKLYVTPLFISLILIEAIDLVFAIDSIPAIFAITNDAYIIYTSNIFAILGLRALFFC 238
Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS 247
++E + Y++ S+A++L FIG K+ + ++ I SL+ T L G+ S+++K+
Sbjct: 239 LAEIVERFSYIKYSLALILIFIGIKIFIHHY-IAIPAYISLTVTITLLLLGIFASVIRKN 297
>sp|Q92GA4|Y1219_RICCN Uncharacterized membrane protein RC1219 OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=RC1219 PE=3 SV=1
Length = 301
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 149/240 (62%), Gaps = 1/240 (0%)
Query: 8 QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
E Y +++E+++S+DN+FV +IF++FK+P YQ+RVL +GI G I+FR +I G
Sbjct: 59 HAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPWQYQHRVLFFGIIGVIIFRAVMIYGGI 118
Query: 68 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
+ +F + + A IL+ + K F D+ +++I K+ + + +T +GN+F
Sbjct: 119 ILINKFAWLLYIFAVILIATGIKTFYVSHKTFDIQNSYIYKSIIKNLNITPNLEGNKFIV 178
Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
++ TPL +++ +IE D+ FA+DSIPA+F +T D +I+++SN+FAILGLR+LF
Sbjct: 179 KRNNKLYCTPLFISLVLIEAIDLVFAIDSIPAIFAITNDVYIIYTSNIFAILGLRALFFC 238
Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS 247
++E + Y++ S+A++L FI K+ + ++ I + + T L G++ S+++K+
Sbjct: 239 LAEIVERFSYIKYSLALILIFISFKIFIHHY-IAIPEYVAFTVTMTLLLFGIIASIIRKN 297
>sp|Q52356|TERC_SERMA Tellurium resistance protein TerC OS=Serratia marcescens GN=terC
PE=3 SV=1
Length = 346
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 147/259 (56%), Gaps = 30/259 (11%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y LE+ LSVDNLFV + IF +F VP Y++RVL +GI GAIVFR + +GT+ L
Sbjct: 76 YALEKVLSVDNLFVMMAIFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIGTSLLSLGPY 135
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSD---NFIVKTCQRFIPVTTYYDGNRFFTNQD-- 130
V +V A I+ +++ + S +DD ++ D + + +RF P+ G+ F NQ
Sbjct: 136 VEVVFAIIVAWTAVMMLKSGDDDDEIEDYSQHLAYRMVKRFFPIWPKLRGHAFLLNQKEV 195
Query: 131 --------------GMRK-----ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVF 171
G K ATPL L VAV+ELSD+ FA DS+PA+ V+R+P IV+
Sbjct: 196 DAELAKPENSDVTIGRGKKAALYATPLFLCVAVVELSDVMFAFDSVPAIIAVSREPLIVY 255
Query: 172 SSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD------YFGFHISTE 225
S+ +FAILGLR+L+ ++ L +L+ ++ V+L FI K+ L+ + G+ I+
Sbjct: 256 SAMMFAILGLRTLYFVLEALKQYLVHLEKAVIVLLFFIAAKLGLNATDHIWHHGYSIAAT 315
Query: 226 ASLSFVATSLSAGVLLSLM 244
SL V L+ G+L S+M
Sbjct: 316 TSLYVVLGVLALGILASVM 334
>sp|P18780|TERC_ALCSP Tellurium resistance protein TerC OS=Alcaligenes sp. GN=terC PE=3
SV=1
Length = 346
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 142/259 (54%), Gaps = 30/259 (11%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y LE+ LSVDNLFV + IF +F VP Y++R L +GI GAIVFR + +GT L
Sbjct: 76 YALEKVLSVDNLFVMMAIFSWFSVPDRYRHRGLYWGIIGAIVFRGIFVAIGTGLLSLGPY 135
Query: 76 VNLVLAGILLFSSFKLFASEEDDTDLSD---NFIVKTCQRFIPVTTYYDGNRFFTNQD-- 130
V L+ A ++ +++ + DD ++ D + + +RF P+ G+ F Q
Sbjct: 136 VELIFAVVVAWTAVMMLKGGGDDDEIEDYSQHLAYRLVKRFFPIWPKLSGHAFLLTQKEV 195
Query: 131 --------------GMRK-----ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVF 171
G K ATPL+L VAV+ELSD+ FA DS+PA+ V+R+P IV+
Sbjct: 196 DAELAKPENKDVSVGRLKKAALYATPLMLCVAVVELSDVMFAFDSVPAIIAVSREPLIVY 255
Query: 172 SSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD------YFGFHISTE 225
S+ +FAILGLR+L+ ++ L L+ ++ V+L FI K+ L+ + G+ +S
Sbjct: 256 SAMMFAILGLRTLYFVLEALKQYLSQLEKAVIVLLFFIAFKLGLNATDHIWHHGYSLSAT 315
Query: 226 ASLSFVATSLSAGVLLSLM 244
SL V L+ G+L S++
Sbjct: 316 TSLYVVLGVLALGILASVI 334
>sp|Q68VW2|Y774_RICTY Uncharacterized membrane protein RT0774 OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=RT0774 PE=3 SV=1
Length = 302
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 151/240 (62%), Gaps = 1/240 (0%)
Query: 8 QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
E Y +++E+++++DN+F+ +IF++FK+P YQ+RVL +GI G I+F+ +I G
Sbjct: 59 HAREYYTCFLIEKAMALDNIFIISIIFQFFKIPTTYQHRVLFFGIIGVIIFKAIIIYGGI 118
Query: 68 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
+ +F + + A IL+ + K F D+ +++I K+ + + +T +G++F
Sbjct: 119 MLIHKFSWLLYIFAVILIATGIKTFNVSHKTYDIQNSYIYKSIIKNLNITHNLEGHKFVI 178
Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
++ +PL +++ +IE D+ FA+DSI A+F +T D +I+++SN+FAILGLRSLF
Sbjct: 179 KRNNKLYFSPLFVSLILIETIDVVFAIDSIAAIFAITNDVYIIYTSNIFAILGLRSLFFC 238
Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKS 247
+SE + Y++ S+A++L FIG K+ + ++ I SL+ TSL G++ S+M+K+
Sbjct: 239 LSEIVERFSYIKYSLALILIFIGFKIFMHHY-IAIPAYISLTVTITSLLLGIIASIMRKN 297
>sp|Q89AT3|Y156_BUCBP Uncharacterized membrane protein bbp_156 OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=bbp_156 PE=3
SV=1
Length = 321
Score = 144 bits (362), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 129/205 (62%), Gaps = 2/205 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y+LEQSLS+DN+ ++ +F+ F + +++Q +L YG A+VFR S+I G L ++
Sbjct: 84 YLLEQSLSMDNVAMWFFLFQLFSISMVHQRVILFYGTFLALVFRSSIIFFGVWLLSKWSF 143
Query: 76 VNLVLAGILLFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR 133
+ VL+ ILLF+ S TD+ + FI+ + +T + N FFT ++G+
Sbjct: 144 LFYVLSIILLFTGIITILSNGVNKKTDVQNTFIMSWIYKKFRITKNFSKNNFFTKENGVI 203
Query: 134 KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMA 193
ATPL L + +IEL+DI F++DSIPA+F +T+DPFI+ +S+ F+I+GLRS++ +++ +
Sbjct: 204 VATPLFLVLILIELNDIIFSIDSIPAIFLITKDPFIIITSSFFSIIGLRSIYVILANSIQ 263
Query: 194 DLEYLQPSIAVVLGFIGCKMILDYF 218
++ I ++L FI K++L F
Sbjct: 264 KFYIIKYGITLILIFISIKILLKEF 288
>sp|P0A615|Y2742_MYCBO Uncharacterized membrane protein Mb2742 OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb2742 PE=3 SV=1
Length = 397
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 127/210 (60%), Gaps = 4/210 (1%)
Query: 11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 70
E + Y+ +++LSVDNLFVF++I F VP + Q +VL +GIA A+V R I +G A +
Sbjct: 67 EYFACYLTDEALSVDNLFVFLVIISSFGVPRLAQQKVLLFGIAFALVTRTGFIFVGAALI 126
Query: 71 QRFEAVNLVLAGILLFSSFKLFA----SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFF 126
+ F + + +LL + L D L + I++ RF+ + Y+G+R F
Sbjct: 127 ENFNSAFYLFGLVLLVMAGNLARPTGLESRDAETLKRSVIIRLADRFLRTSQDYNGDRLF 186
Query: 127 TNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFT 186
T + R TPLLL + + +DI FA DSIPA+FG+T++ ++VF++ F++LGLR L+
Sbjct: 187 TVSNNKRMMTPLLLVMIAVGGTDILFAFDSIPALFGLTQNVYLVFAATAFSLLGLRQLYF 246
Query: 187 LISEGMADLEYLQPSIAVVLGFIGCKMILD 216
LI + L YL +AV+LGFIG K++L+
Sbjct: 247 LIDGLLDRLVYLSYGLAVILGFIGVKLMLE 276
>sp|P0A614|Y2723_MYCTU Uncharacterized membrane protein Rv2723/MT2795 OS=Mycobacterium
tuberculosis GN=Rv2723 PE=3 SV=1
Length = 397
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 127/210 (60%), Gaps = 4/210 (1%)
Query: 11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 70
E + Y+ +++LSVDNLFVF++I F VP + Q +VL +GIA A+V R I +G A +
Sbjct: 67 EYFACYLTDEALSVDNLFVFLVIISSFGVPRLAQQKVLLFGIAFALVTRTGFIFVGAALI 126
Query: 71 QRFEAVNLVLAGILLFSSFKLFA----SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFF 126
+ F + + +LL + L D L + I++ RF+ + Y+G+R F
Sbjct: 127 ENFNSAFYLFGLVLLVMAGNLARPTGLESRDAETLKRSVIIRLADRFLRTSQDYNGDRLF 186
Query: 127 TNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFT 186
T + R TPLLL + + +DI FA DSIPA+FG+T++ ++VF++ F++LGLR L+
Sbjct: 187 TVSNNKRMMTPLLLVMIAVGGTDILFAFDSIPALFGLTQNVYLVFAATAFSLLGLRQLYF 246
Query: 187 LISEGMADLEYLQPSIAVVLGFIGCKMILD 216
LI + L YL +AV+LGFIG K++L+
Sbjct: 247 LIDGLLDRLVYLSYGLAVILGFIGVKLMLE 276
>sp|O05976|Y786_RICPR Uncharacterized membrane protein RP786 OS=Rickettsia prowazekii
(strain Madrid E) GN=RP786 PE=3 SV=1
Length = 297
Score = 137 bits (344), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 148/239 (61%), Gaps = 1/239 (0%)
Query: 8 QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT 67
E Y +++E+++++DN+F+ +IF++F +P YQ+RVL +GI G I+F+ +I G
Sbjct: 59 HAREYYTCFLIEKAMALDNIFIISIIFQFFNIPSTYQHRVLFFGIIGVIIFKAIIIYGGI 118
Query: 68 ATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFT 127
+ +F + +LA IL+ + K F D+ +++I K+ + + +T +G +F
Sbjct: 119 MLIHKFSWLLYILAVILIATGIKTFNVSHKTYDIQNSYIYKSIIKNLNITHDLEGQKFVI 178
Query: 128 NQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTL 187
++ + L +++ +IE D+ FA+DSI A+F +T D +I+++SN+FAILGLRSLF
Sbjct: 179 KRNNKLYFSTLFVSLILIETIDLVFAIDSIAAIFAITNDVYIIYTSNIFAILGLRSLFFC 238
Query: 188 ISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKK 246
+SE + Y++ S+A++L FIG K+ + ++ I SL+ +SL G++ S+++K
Sbjct: 239 LSEIVERFSYIKYSLALILIFIGFKIFIHHY-IEIPAYISLTVTISSLLFGIIASILEK 296
>sp|Q8K9X4|Y160_BUCAP Uncharacterized membrane protein BUsg_160 OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=BUsg_160 PE=3
SV=1
Length = 310
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 2/230 (0%)
Query: 16 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 75
Y LE LS+DN+F + IFK K+P++YQ +VL YG+ GA++ R G+ ++
Sbjct: 76 YFLEILLSIDNVFAWFFIFKSLKIPLIYQKKVLLYGLWGALILRSIFSFSGSFLFSKWHW 135
Query: 76 VNLVLAGILLFSSFK-LFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK 134
+ + G + +S K +F S + + +N +F VT + FF +
Sbjct: 136 ILYLFGGFFILTSLKFIFFSNLECDNKEENIKKLWIYKFFRVTENINNENFFVKIEKKIF 195
Query: 135 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMAD 194
TPL +++ +IELSDI F+VDSIPA V D FI+FSSN FA+LGLRS++ + + +
Sbjct: 196 ITPLFVSLILIELSDIVFSVDSIPAALSVNNDLFIIFSSNFFAVLGLRSMYLFTAYFLKN 255
Query: 195 LEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLM 244
++ +++++L FIG K++++ F F S +L+ + L L++L+
Sbjct: 256 FPIMKYALSLILMFIGFKILIEKF-FTFSIFLTLAVILIILITTFLINLI 304
>sp|O34447|YCEF_BACSU Uncharacterized membrane protein YceF OS=Bacillus subtilis (strain
168) GN=yceF PE=3 SV=1
Length = 257
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 32/201 (15%)
Query: 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 76
+LE LS DN V ++ K+ +P + + L+YG+ GA +FR I LG L +F +
Sbjct: 38 VLEGLLSADNALVLAVMVKH--LPEKQRKKALTYGLFGAYIFRFIFIGLGM-LLIKFWWI 94
Query: 77 NLVLAGILLFSSFKLF----ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGM 132
++ A L + K F EE D ++++V+T F
Sbjct: 95 KVLGALYLAWLVIKHFWIGEKEEEADGMKKNSWMVRTFGIFWA----------------- 137
Query: 133 RKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGM 192
TV +EL D+AF+VDSI A F V+ +++ + IL +R++ + +
Sbjct: 138 --------TVISVELMDLAFSVDSILAAFAVSEKVWVLLIGGMLGILMMRTVAKVFLVLI 189
Query: 193 ADLEYLQPSIAVVLGFIGCKM 213
+ L+ + V++G I KM
Sbjct: 190 DKIPELENTAFVLIGIIALKM 210
>sp|Q6BMD6|M28P1_DEBHA Probable zinc metalloprotease DEHA2F06380g OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DEHA2F06380g PE=3 SV=2
Length = 1016
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 91 LFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDI 150
LF ++D + ++N I KT TYY+ N +G + P LL A
Sbjct: 138 LFIECDNDVNYTNNIIFKTENDLYNQVTYYESNNLLVRINGSDSSLPALLVSA------- 190
Query: 151 AFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGF 208
DS+P+ FGVT D + S +LG+ + ++ S+G+ QP ++L F
Sbjct: 191 --HFDSVPSSFGVTDDGMGIAS-----LLGILNYYS--SDGID-----QPMRTIILNF 234
>sp|O34997|YKOY_BACSU Uncharacterized membrane protein YkoY OS=Bacillus subtilis (strain
168) GN=ykoY PE=3 SV=1
Length = 324
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 53/218 (24%)
Query: 18 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVN 77
LE L+ DN V ++ K+ +P + + L YG+AGA V R L + L V
Sbjct: 79 LEGILAADNALVMAVMVKH--LPEEKRKKALFYGLAGAFVLRFG-SLFAISFLVNVWQVQ 135
Query: 78 LVLAGILLFSS----FKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR 133
+ A LL+ S K + +++DT T Q G
Sbjct: 136 AIGAIYLLYISASHLLKRYVFKKEDTHKE------------------------TKQSGFW 171
Query: 134 KATPLLLTVAVIELSDIAFAVDSI---------------PAVFGVTRDPFIV-FSSNLFA 177
TV +EL+DIAFAVDSI P + G+ F+V + +
Sbjct: 172 P------TVLKVELADIAFAVDSILAAVALAVTLPGTSLPKIGGLDGGQFLVILAGGIIG 225
Query: 178 ILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 215
++ +R ++ + + + L+ + V++G++G K+ L
Sbjct: 226 LVIMRFAASMFVKLLKERPSLETAAFVIVGWVGVKLAL 263
>sp|P67127|YGDQ_ECOLI UPF0053 inner membrane protein YgdQ OS=Escherichia coli (strain
K12) GN=ygdQ PE=1 SV=1
Length = 237
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 76
+LE L +DN+ L+ K+P + G+AGA+V RL+L L A + R
Sbjct: 20 LLEIVLGIDNIIFLSLVVA--KLPTAQRAHARRLGLAGAMVMRLAL-LASIAWVTR---- 72
Query: 77 NLVLAGILLFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR- 133
L F +F+ E D L + + + +G ++G++
Sbjct: 73 -------LTNPLFTIFSQEISARDLILLLGGLFLIWKASKEIHESIEGE-----EEGLKT 120
Query: 134 KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMA 193
+ + L + I L DI F++DS+ G++ FI+ ++ + A+ + + +
Sbjct: 121 RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAV----GVMMFAARSIG 176
Query: 194 DLEYLQPSIAVV----LGFIGCKMILDYFGFHI 222
D PS+ ++ L +G +IL+ F H+
Sbjct: 177 DFVERHPSVKMLALSFLILVGFTLILESFDIHV 209
>sp|P67128|YGDQ_ECOL6 UPF0053 inner membrane protein YgdQ OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ygdQ PE=3 SV=1
Length = 237
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 76
+LE L +DN+ L+ K+P + G+AGA+V RL+L L A + R
Sbjct: 20 LLEIVLGIDNIIFLSLVVA--KLPTAQRAHARRLGLAGAMVMRLAL-LASIAWVTR---- 72
Query: 77 NLVLAGILLFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR- 133
L F +F+ E D L + + + +G ++G++
Sbjct: 73 -------LTNPLFTIFSQEISARDLILLLGGLFLIWKASKEIHESIEGE-----EEGLKT 120
Query: 134 KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMA 193
+ + L + I L DI F++DS+ G++ FI+ ++ + A+ + + +
Sbjct: 121 RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAV----GVMMFAARSIG 176
Query: 194 DLEYLQPSIAVV----LGFIGCKMILDYFGFHI 222
D PS+ ++ L +G +IL+ F H+
Sbjct: 177 DFVERHPSVKMLALSFLILVGFTLILESFDIHV 209
>sp|P67129|YGDQ_ECO57 UPF0053 inner membrane protein YgdQ OS=Escherichia coli O157:H7
GN=ygdQ PE=3 SV=1
Length = 237
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 30/213 (14%)
Query: 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAV 76
+LE L +DN+ L+ K+P + G+AGA+V RL+L L A + R
Sbjct: 20 LLEIVLGIDNIIFLSLVVA--KLPTAQRAHARRLGLAGAMVMRLAL-LASIAWVTR---- 72
Query: 77 NLVLAGILLFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR- 133
L F +F+ E D L + + + +G ++G++
Sbjct: 73 -------LTNPLFTIFSQEISARDLILLLGGLFLIWKASKEIHESIEGE-----EEGLKT 120
Query: 134 KATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMA 193
+ + L + I L DI F++DS+ G++ FI+ ++ + A+ + + +
Sbjct: 121 RVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAV----GVMMFAARSIG 176
Query: 194 DLEYLQPSIAVV----LGFIGCKMILDYFGFHI 222
D PS+ ++ L +G +IL+ F H+
Sbjct: 177 DFVERHPSVKMLALSFLILVGFTLILESFDIHV 209
>sp|Q2RFN9|RPOB_MOOTA DNA-directed RNA polymerase subunit beta OS=Moorella thermoacetica
(strain ATCC 39073) GN=rpoB PE=3 SV=1
Length = 1141
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 93 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVI 145
AS+ D D+S +V IP + D NR + R+A PLL T A I
Sbjct: 525 ASQVDYMDVSPKQMVSVATALIPFLEHDDANRALMGANMQRQAVPLLRTEAPI 577
>sp|A6TWJ0|RPOB_ALKMQ DNA-directed RNA polymerase subunit beta OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rpoB PE=3 SV=1
Length = 1246
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 95 EEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAV 154
E D D+S +V IP D NR + R+A PLL+T A I + + +
Sbjct: 628 EVDYMDVSPKQVVSVATAMIPFLENDDANRALMGSNMQRQAVPLLITDAPIIGTGMEYKA 687
Query: 155 DSIPAVFGVTRDPFIV 170
V V R+ IV
Sbjct: 688 AKDSGVVVVARNSGIV 703
>sp|B9MQG5|RPOB_CALBD DNA-directed RNA polymerase subunit beta OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=rpoB PE=3 SV=1
Length = 1228
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 95 EEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAF-- 152
E D D+S IV IP D NR + R+A PLL+T + I + + +
Sbjct: 634 EVDLIDISPKQIVSVSTSLIPFLENDDANRALMGSNMQRQAVPLLMTESPIIGTGVEYRA 693
Query: 153 AVDS 156
AVDS
Sbjct: 694 AVDS 697
>sp|A8MLD2|RPOB_ALKOO DNA-directed RNA polymerase subunit beta OS=Alkaliphilus oremlandii
(strain OhILAs) GN=rpoB PE=3 SV=1
Length = 1241
Score = 32.7 bits (73), Expect = 2.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 93 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVI 145
A+E D D+S +V IP D NR + R+A PLL+T A I
Sbjct: 627 ANEVDYMDVSPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLLITDAPI 679
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp.
japonica GN=Os07g0143700 PE=2 SV=2
Length = 602
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 24/104 (23%)
Query: 2 TRACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLS 61
TR RQ E+E+ ++S +D+L V Y VP+ +Q R L+YG+
Sbjct: 167 TRELARQVEKEF-----KESAPLDSLCV------YGGVPISHQMRALNYGVD-------- 207
Query: 62 LILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNF 105
+++GT ++L+ G+L S + +E D L+ F
Sbjct: 208 -VVVGTPG----RIIDLLRRGVLNLSEIQFVVLDEADQMLAVGF 246
>sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase subunit beta OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=rpoB PE=3 SV=1
Length = 1303
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 91 LFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVI 145
+ A E + D+S IV IP + DGNR + R+A PLL++ A I
Sbjct: 633 VLAEEVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQAVPLLVSEAPI 687
>sp|Q3A9Q7|RPOB_CARHZ DNA-directed RNA polymerase subunit beta OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpoB PE=3
SV=1
Length = 1132
Score = 31.6 bits (70), Expect = 5.6, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 94 SEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFA 153
S+ D D+S + IP + D NR + R+A PL+ T A + + I +
Sbjct: 541 SKVDFVDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGIEYK 600
Query: 154 VDSIPAVFGVTRDPFIV 170
V + ++P +V
Sbjct: 601 AAKDSGVVVLAKNPGVV 617
>sp|A5DDN8|M28P1_PICGU Probable zinc metalloprotease PGUG_01389 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PGUG_01389 PE=3
SV=2
Length = 970
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 90 KLFASEEDDTDLSDNFIVKTCQRFIPVT-TYYDGNRFFTNQDGMRKATPLLLTVAVIELS 148
K + ++D + + +F+ +T P T TYY+ N +G P LL A
Sbjct: 136 KSYMEYDNDLNNTHSFLRQTA----PSTVTYYESNNLIVRINGSDPELPALLLSA----- 186
Query: 149 DIAFAVDSIPAVFGVTRD 166
DS+P+ FGVT D
Sbjct: 187 ----HYDSVPSSFGVTDD 200
>sp|Q8A469|RPOB_BACTN DNA-directed RNA polymerase subunit beta OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=rpoB PE=3 SV=1
Length = 1270
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 93 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVI 145
SE D D+S I IP + D NR + MR+A PLL + A I
Sbjct: 611 PSEVDLMDVSPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSEAPI 663
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,069,741
Number of Sequences: 539616
Number of extensions: 3012045
Number of successful extensions: 9145
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9095
Number of HSP's gapped (non-prelim): 44
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)