Query 025803
Match_columns 248
No_of_seqs 113 out of 1050
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 2.4E-71 5.2E-76 504.4 27.7 245 4-248 57-302 (302)
2 COG0861 TerC Membrane protein 100.0 7.3E-53 1.6E-57 376.4 26.7 225 7-245 15-244 (254)
3 TIGR03716 R_switched_YkoY inte 100.0 1.8E-52 4E-57 365.8 24.2 201 17-245 2-215 (215)
4 PF03741 TerC: Integral membra 100.0 7.2E-51 1.6E-55 348.6 20.7 183 13-216 1-183 (183)
5 TIGR03717 R_switched_YjbE inte 100.0 4.1E-45 8.8E-50 311.3 22.3 174 12-217 2-176 (176)
6 PRK14013 hypothetical protein; 100.0 1.3E-44 2.9E-49 330.8 25.3 238 7-248 27-332 (338)
7 PF04332 DUF475: Protein of un 100.0 3.7E-33 8E-38 250.7 10.8 221 24-248 1-293 (294)
8 COG2899 Uncharacterized protei 100.0 6E-33 1.3E-37 247.4 10.4 225 17-248 44-340 (346)
9 PF01914 MarC: MarC family int 97.9 0.0016 3.5E-08 56.8 17.8 74 21-96 15-92 (203)
10 COG1971 Predicted membrane pro 97.9 0.0031 6.7E-08 54.6 18.9 171 11-218 2-188 (190)
11 PRK10995 inner membrane protei 97.8 0.0048 1E-07 54.4 18.9 71 23-95 21-95 (221)
12 TIGR00427 membrane protein, Ma 97.7 0.0069 1.5E-07 52.9 17.7 75 19-95 16-94 (201)
13 PRK10739 putative antibiotic t 97.7 0.013 2.7E-07 51.2 19.2 73 21-95 15-91 (197)
14 PRK11469 hypothetical protein; 97.6 0.016 3.4E-07 50.1 18.4 169 11-217 2-185 (188)
15 PRK11111 hypothetical protein; 97.4 0.028 6E-07 49.6 18.5 72 22-95 22-97 (214)
16 COG2095 MarC Multiple antibiot 97.4 0.021 4.6E-07 50.0 17.2 76 19-96 16-95 (203)
17 PRK10323 cysteine/O-acetylseri 97.4 0.076 1.6E-06 45.6 20.7 84 7-95 4-94 (195)
18 PF03741 TerC: Integral membra 97.3 0.0051 1.1E-07 52.9 11.7 75 10-93 107-182 (183)
19 COG1280 RhtB Putative threonin 97.0 0.12 2.6E-06 45.0 18.3 78 14-95 12-94 (208)
20 PF03596 Cad: Cadmium resistan 97.0 0.018 4E-07 50.0 12.2 73 23-97 5-79 (191)
21 COG0861 TerC Membrane protein 96.9 0.0082 1.8E-07 54.3 10.3 75 12-95 137-212 (254)
22 PF01810 LysE: LysE type trans 96.9 0.22 4.7E-06 42.0 18.8 70 23-96 8-82 (191)
23 TIGR03716 R_switched_YkoY inte 96.9 0.015 3.2E-07 51.5 11.1 76 11-95 98-174 (215)
24 TIGR03717 R_switched_YjbE inte 96.7 0.026 5.7E-07 48.3 11.5 75 142-217 2-82 (176)
25 PRK10958 leucine export protei 96.7 0.33 7.2E-06 42.2 18.6 74 18-95 20-98 (212)
26 PRK09304 arginine exporter pro 96.0 0.87 1.9E-05 39.3 19.8 79 11-95 8-91 (207)
27 TIGR02840 spore_YtaF putative 95.6 1.4 3E-05 38.5 18.6 77 14-94 2-81 (206)
28 PRK10229 threonine efflux syst 95.5 0.17 3.7E-06 43.5 10.4 77 15-95 12-93 (206)
29 TIGR00949 2A76 The Resistance 95.3 1.5 3.3E-05 36.7 17.4 68 23-94 3-75 (185)
30 TIGR03718 R_switched_Alx integ 95.1 0.16 3.5E-06 47.1 9.3 77 140-217 63-148 (302)
31 PRK10520 rhtB homoserine/homos 94.9 0.25 5.4E-06 42.4 9.6 75 17-95 15-94 (205)
32 TIGR00948 2a75 L-lysine export 94.9 0.22 4.8E-06 41.8 9.0 67 23-95 6-77 (177)
33 COG4280 Predicted membrane pro 93.7 4.6 9.9E-05 35.7 14.7 80 166-245 146-229 (236)
34 COG2119 Predicted membrane pro 93.3 4.8 0.0001 35.0 14.0 156 24-217 17-185 (190)
35 COG1279 Lysine efflux permease 86.6 22 0.00047 31.3 18.6 75 12-95 9-91 (202)
36 COG4300 CadD Predicted permeas 75.2 15 0.00032 32.1 7.2 84 10-97 3-90 (205)
37 PRK11469 hypothetical protein; 72.4 41 0.00088 29.0 9.5 74 143-218 4-89 (188)
38 TIGR00779 cad cadmium resistan 71.4 5.5 0.00012 34.8 3.9 71 23-97 5-78 (193)
39 COG1971 Predicted membrane pro 67.0 87 0.0019 27.3 11.3 74 143-218 4-89 (190)
40 PF11298 DUF3099: Protein of u 61.9 32 0.00069 25.4 5.8 50 41-92 11-62 (73)
41 PRK07668 hypothetical protein; 58.3 1.5E+02 0.0032 27.0 11.5 76 168-244 115-195 (254)
42 KOG2881 Predicted membrane pro 57.8 54 0.0012 30.3 7.6 68 146-218 80-152 (294)
43 TIGR02840 spore_YtaF putative 55.5 89 0.0019 27.2 8.6 71 146-218 4-83 (206)
44 PF06695 Sm_multidrug_ex: Puta 50.7 51 0.0011 26.3 5.8 45 156-200 5-53 (121)
45 PF11947 DUF3464: Protein of u 44.2 58 0.0013 27.4 5.3 36 205-240 77-112 (153)
46 PF05661 DUF808: Protein of un 43.9 71 0.0015 29.7 6.2 19 74-92 88-106 (295)
47 PRK14013 hypothetical protein; 40.4 1.6E+02 0.0035 27.9 8.2 78 9-94 222-301 (338)
48 COG2119 Predicted membrane pro 39.5 1.5E+02 0.0032 25.9 7.2 59 160-218 26-87 (190)
49 PF09597 IGR: IGR protein moti 38.7 52 0.0011 23.1 3.6 40 3-50 10-50 (57)
50 KOG1688 Golgi proteins involve 36.7 2.3E+02 0.0049 24.6 7.8 50 39-95 36-85 (188)
51 TIGR00948 2a75 L-lysine export 35.1 1.8E+02 0.0039 24.0 7.0 23 195-217 55-77 (177)
52 KOG2881 Predicted membrane pro 33.9 3.5E+02 0.0075 25.1 8.9 83 8-95 61-151 (294)
53 TIGR00949 2A76 The Resistance 33.8 1.9E+02 0.0042 23.8 7.1 47 170-216 24-75 (185)
54 PRK10229 threonine efflux syst 32.4 2E+02 0.0044 24.3 7.1 20 197-216 73-92 (206)
55 COG2899 Uncharacterized protei 32.0 2.5E+02 0.0054 26.3 7.8 80 136-216 34-144 (346)
56 PRK10062 hypothetical protein; 30.2 1.9E+02 0.0042 27.0 6.8 19 74-92 88-106 (303)
57 PF02659 DUF204: Domain of unk 25.1 2.4E+02 0.0052 19.5 8.2 14 74-87 53-66 (67)
58 PRK10323 cysteine/O-acetylseri 25.0 2.8E+02 0.006 23.5 6.6 20 197-216 74-93 (195)
59 PF06570 DUF1129: Protein of u 24.0 4.6E+02 0.01 22.4 10.7 68 170-238 117-194 (206)
60 PF01810 LysE: LysE type trans 22.8 4.3E+02 0.0094 21.7 7.3 24 195-218 59-82 (191)
61 TIGR03141 cytochro_ccmD heme e 22.6 78 0.0017 20.8 2.1 25 223-247 7-31 (45)
62 PF10797 YhfT: Protein of unkn 22.6 1.5E+02 0.0032 28.9 4.7 39 164-202 307-345 (420)
63 COG1280 RhtB Putative threonin 22.3 3.4E+02 0.0074 23.3 6.7 29 189-217 66-94 (208)
64 PRK10520 rhtB homoserine/homos 22.0 3.5E+02 0.0076 22.8 6.7 22 195-216 72-93 (205)
65 COG2354 Uncharacterized protei 21.8 1E+02 0.0022 28.5 3.3 41 43-92 66-106 (303)
66 KOG2532 Permease of the major 21.7 4.7E+02 0.01 25.6 8.2 73 21-95 141-218 (466)
67 PRK10692 hypothetical protein; 21.7 3.7E+02 0.008 20.7 5.8 41 201-241 17-57 (92)
68 PRK10995 inner membrane protei 21.5 4.5E+02 0.0098 22.9 7.4 63 154-216 22-94 (221)
69 PF04995 CcmD: Heme exporter p 21.3 82 0.0018 20.7 2.0 24 224-247 7-30 (46)
70 PF14036 YlaH: YlaH-like prote 20.7 3.7E+02 0.008 20.1 9.0 47 190-237 26-72 (77)
71 PF10762 DUF2583: Protein of u 20.5 3.7E+02 0.008 20.6 5.6 41 201-241 17-57 (89)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=2.4e-71 Score=504.43 Aligned_cols=245 Identities=44% Similarity=0.748 Sum_probs=237.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 025803 4 ACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGI 83 (248)
Q Consensus 4 ~~~~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~ 83 (248)
.++|.+.||+|+|++|++||+||++|+++++++|++|++||||+|+||+.+|+++|++|+++++++++++||++++||+|
T Consensus 57 ~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~f 136 (302)
T TIGR03718 57 LGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHWVLYIFGAF 136 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHh
Q 025803 84 LLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV 163 (248)
Q Consensus 84 Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ai 163 (248)
|+|+|+|++++++|++|+++|+.+|+++|++|++++|||++|++|+||++.+||++.++++||.+|++||+|||||++|+
T Consensus 137 Li~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tpl~~vli~Ie~~DlvFslDSIpAi~ai 216 (302)
T TIGR03718 137 LLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRYATPLFLVLVLVETTDLIFAVDSIPAIFAI 216 (302)
T ss_pred HHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCceecCcHHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 99999999998777777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhccc-ccChhHHHHHHHHHHHHHHHHH
Q 025803 164 TRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGF-HISTEASLSFVATSLSAGVLLS 242 (248)
Q Consensus 164 t~~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~~~-~ip~~~~~~~i~~vl~~~i~~S 242 (248)
|+||+++++||++|++++|++|+.+++++|||||+||+++.+|+++|+||++++.|+ |+|+++|+++++++++.++++|
T Consensus 217 T~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~fIGvkmll~~~~~~~ip~~~sl~vi~~~l~~~i~~S 296 (302)
T TIGR03718 217 TQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVFIGVKMLLHATDVYHIPIGVSLGVIVGILAVSIVAS 296 (302)
T ss_pred hcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCcCCCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998765 9999999999999999999999
Q ss_pred hhccCC
Q 025803 243 LMKKSD 248 (248)
Q Consensus 243 ~~~~~~ 248 (248)
+.++|+
T Consensus 297 l~~~~~ 302 (302)
T TIGR03718 297 LWKTRK 302 (302)
T ss_pred hcccCC
Confidence 988875
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-53 Score=376.44 Aligned_cols=225 Identities=28% Similarity=0.385 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Q 025803 7 RQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLF 86 (248)
Q Consensus 7 ~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~ 86 (248)
+.+.+++|++++|++||+||++|+++++++ +||+||||+++||+.+|+++|+++++.++++++.++|..++||.+|+|
T Consensus 15 ~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~l~~~fg~~L~~ 92 (254)
T COG0861 15 AAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQPLLYIFGLYLLW 92 (254)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344699999999999999999999999995 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCcc-ccchHHHHHHHHHHHHHHhccchhHHHHHhcC
Q 025803 87 SSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAFAVDSIPAVFGVTR 165 (248)
Q Consensus 87 ~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~-~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~ 165 (248)
+++|++.+++++. .|+.++.. ++++|++++. +++. ..||+|.++.+||++|++||+|||||++|+|+
T Consensus 93 ~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~~ 160 (254)
T COG0861 93 RDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVFSLDSVIAAVGMAG 160 (254)
T ss_pred HHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 9999998765432 23333333 6788888887 3333 77999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh---cccccChhH-HHHHHHHHHHHHHHH
Q 025803 166 DPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY---FGFHISTEA-SLSFVATSLSAGVLL 241 (248)
Q Consensus 166 ~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~---~~~~ip~~~-~~~~i~~vl~~~i~~ 241 (248)
|++++++|+++|+++||++|+.+.+++||||+++|+++.+|+++|+||+.++ .++|+|+++ +..+...+++..+..
T Consensus 161 ~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~IG~kli~~~~~~~~~~ip~~~~~~~v~f~vl~~~~~~ 240 (254)
T COG0861 161 HPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLFIGVKLILEGLAHFGFHIPKGYLYLAVGFSVLIELLNI 240 (254)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHHHHHHHHhhhccccccCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 667888665 445556677777777
Q ss_pred Hhhc
Q 025803 242 SLMK 245 (248)
Q Consensus 242 S~~~ 245 (248)
|.++
T Consensus 241 ~~~~ 244 (254)
T COG0861 241 SARK 244 (254)
T ss_pred HHHH
Confidence 7665
No 3
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=1.8e-52 Score=365.82 Aligned_cols=201 Identities=26% Similarity=0.413 Sum_probs=178.1
Q ss_pred HHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhccc
Q 025803 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 96 (248)
Q Consensus 17 ~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~~~~~ 96 (248)
++|++||+||++|++++++ ++|++||||+++||+.+|+++|++|++++++++ +++|++++||+||+|+++|++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-KFWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999 599999999999999999999999999999999 6789999999999999999999765
Q ss_pred CCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHH
Q 025803 97 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF 176 (248)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ 176 (248)
++++.++++ .+...+++|.++.+||.+|++||+|||+|++|+|+|++++++|+++
T Consensus 79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~ 133 (215)
T TIGR03716 79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII 133 (215)
T ss_pred ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence 443322221 0111246889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh--------cccccChh-----HHHHHHHHHHHHHHHHHh
Q 025803 177 AILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY--------FGFHISTE-----ASLSFVATSLSAGVLLSL 243 (248)
Q Consensus 177 ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~--------~~~~ip~~-----~~~~~i~~vl~~~i~~S~ 243 (248)
|+++||++|+.+++++||||++||+++.+|+++|+||++++ .++|+|+. .+..+++.++.++.+.|.
T Consensus 134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ig~kLil~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~~~~~~~ 213 (215)
T TIGR03716 134 GILIMRFAATIFVKLLERFPELETAAFLLIGWIGVKLLLETLAHPSIPILHIEFPHSALWKLIFWGVLVAIAVVGWILSY 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCcchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999964 45667765 888889999988888876
Q ss_pred hc
Q 025803 244 MK 245 (248)
Q Consensus 244 ~~ 245 (248)
+|
T Consensus 214 ~~ 215 (215)
T TIGR03716 214 RR 215 (215)
T ss_pred cC
Confidence 54
No 4
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=100.00 E-value=7.2e-51 Score=348.61 Aligned_cols=183 Identities=38% Similarity=0.587 Sum_probs=163.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 025803 13 YWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 92 (248)
Q Consensus 13 ~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~ 92 (248)
++++++|.+||+||++|+++++++ +|++||||+++||+.+|+++|++++++++++++.+||++++||+||+|+++|++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999995 999999999999999999999999999999997779999999999999999999
Q ss_pred hcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHH
Q 025803 93 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 172 (248)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~ 172 (248)
++++ ++|+ +++..++.++..| ....++|.++.+||++|++||+|||||++|+|+|++++++
T Consensus 79 ~~~~-~~d~-~~~~~~~~~~~~~-----------------~~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~ 139 (183)
T PF03741_consen 79 HEER-DEDP-ENAEVEEEKKFFP-----------------VSKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT 139 (183)
T ss_pred Hhcc-cccc-chhhhhhhhcccc-----------------chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 9875 2333 3333333332222 1224589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHh
Q 025803 173 SNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 173 g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~ 216 (248)
|+++|+++||++|+.+++++||||+++++++.+|+++|+||++|
T Consensus 140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999875
No 5
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=4.1e-45 Score=311.31 Aligned_cols=174 Identities=24% Similarity=0.309 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 025803 12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 91 (248)
Q Consensus 12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~ 91 (248)
+++..++|.+||+||++|++++++ ++|++||||++.||+.+|+++|.+|+++|.++++ +||+++.||++|+|+|+||
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888 6999999999999999999999999999999995 7999999999999999999
Q ss_pred hhcccCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHhcC-ChhHH
Q 025803 92 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV 170 (248)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~-~~~li 170 (248)
++++++++|.++ ...+|+|.++.+||.+|++||+|||||++|+|+ |++++
T Consensus 79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li 129 (176)
T TIGR03717 79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL 129 (176)
T ss_pred Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 986544333211 123789999999999999999999999999997 67889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh
Q 025803 171 FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 217 (248)
Q Consensus 171 ~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~ 217 (248)
++|.++|++.||+.+..+.+++||||++||+++.+|+|+|+||+++|
T Consensus 130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~d 176 (176)
T TIGR03717 130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVTD 176 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999864
No 6
>PRK14013 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=330.83 Aligned_cols=238 Identities=21% Similarity=0.249 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-------------
Q 025803 7 RQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------- 72 (248)
Q Consensus 7 ~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~------------- 72 (248)
+......+..++|.+||.||++++|.+.+ ++|++||||+|.||+.+|+ ++|++|++..+++.+.
T Consensus 27 ~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgmRlvfp~~iv~i~a~~~p~~~~~~a~s~ 104 (338)
T PRK14013 27 SALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGMRLVFPLLIVAVAAGLGPIEALKLALND 104 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHcCC
Confidence 44555677779999999999999999999 5899999999999999996 9999999999998764
Q ss_pred -----------chHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHHhhhhccc-------------------ccccCC
Q 025803 73 -----------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPV-------------------TTYYDG 122 (248)
Q Consensus 73 -----------~~~i~~~gG~~Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 122 (248)
.|.+..+||.||++.+.++++++|+|.++-. ++.|.++|.-+. .++.+.
T Consensus 105 ~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g~~~~~~v~~~l~~l~~~~~~~~~~~~~ 183 (338)
T PRK14013 105 PDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLGKLDGISVIVALVLLLIFSLLLPADEAL 183 (338)
T ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhcCccchHHHHHHHHHHHHHHHcccchhh
Confidence 2347889999999999999998877666432 222333332221 111100
Q ss_pred -------------------Cceeecc--C-CccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHH
Q 025803 123 -------------------NRFFTNQ--D-GMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILG 180 (248)
Q Consensus 123 -------------------~~f~~~~--~-g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~ 180 (248)
++++..+ + .+...+.-+..++++|++|++||+|||||++|+|+|++++++||++|+++
T Consensus 184 ~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS~DsV~aafAiT~d~~II~~g~~igil~ 263 (338)
T PRK14013 184 TVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFSFDGVIGAFAITNDIFIIALGLGIGAMF 263 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHhccchhheeecCcHHHHHHHHHHHHHH
Confidence 0122111 1 11234566789999999999999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 025803 181 LRSL--FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD 248 (248)
Q Consensus 181 lr~l--~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~S~~~~~~ 248 (248)
+|++ |++..+.++|||||||+++++++++|+||+++ .++|+|+|+++.+++.++..++.+|++++|+
T Consensus 264 lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lgvkmll~-~~~~IPe~vs~~i~~~~i~~si~~S~~~~r~ 332 (338)
T PRK14013 264 VRSLTIYLVEKGTLDEYVYLEHGAHYAIGALAVIMLLS-IGVHIPEVITGLIGVALIGLAFWSSIRYNRR 332 (338)
T ss_pred HHHHHHHHHHHHHHHHhHhhhccHHHHHHHHHHHHHHh-cCcCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 88888899999999999999999999999998 5689999999999999999999999987653
No 7
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=100.00 E-value=3.7e-33 Score=250.67 Aligned_cols=221 Identities=20% Similarity=0.283 Sum_probs=179.2
Q ss_pred hhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------chHHHH
Q 025803 24 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL 78 (248)
Q Consensus 24 ~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~------------------------~~~i~~ 78 (248)
.|||+|+|.+.+. +.+.|||+.|.||+++|+ ++|++|++++++..++ .+.+..
T Consensus 1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa 78 (294)
T PF04332_consen 1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA 78 (294)
T ss_pred CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence 4999999999995 789999999999999995 9999999999997654 234788
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcchhHHHHHhhhhccc-------------------ccccC--CC--------------
Q 025803 79 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPV-------------------TTYYD--GN-------------- 123 (248)
Q Consensus 79 ~gG~~Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~--~~-------------- 123 (248)
+||.||++.+.+++++++| .++-. ++.|.+.|.-+. .++-+ ..
T Consensus 79 FGG~FLlmvfL~f~f~~~k-~~Wl~-~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~ 156 (294)
T PF04332_consen 79 FGGMFLLMVFLDFFFDEEK-VHWLR-WIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI 156 (294)
T ss_pred HhHHHHHHHHHheeecCCc-ceeeh-HHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999998766 44321 122222222111 00000 00
Q ss_pred -----ceeeccCC-----ccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH--HH
Q 025803 124 -----RFFTNQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLIS--EG 191 (248)
Q Consensus 124 -----~f~~~~~g-----~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~lr~l~~~~~--~~ 191 (248)
+++..+++ ......-+..+++.|+.|.+||+|+|++|+|+|+|++++..|+.+|.+.+|++.-.+. +.
T Consensus 157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt 236 (294)
T PF04332_consen 157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT 236 (294)
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence 11112111 1234567889999999999999999999999999999999999999999999965555 79
Q ss_pred HHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 025803 192 MADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD 248 (248)
Q Consensus 192 l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~S~~~~~~ 248 (248)
+++|+||||++.+.++..|+-|+++..|+|+|++++..+.+..+.+++..|++++|+
T Consensus 237 L~~Y~YLEhGA~yAIg~La~IMll~~~~~~iPE~vTglig~~~Ig~a~~sSi~~~r~ 293 (294)
T PF04332_consen 237 LSEYRYLEHGAHYAIGALAVIMLLSIFGFHIPEVVTGLIGVVFIGLAFWSSIRYNRR 293 (294)
T ss_pred HHHhHHHhcchHHHHHHHHHHHHHHhhcccchHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999988775
No 8
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6e-33 Score=247.43 Aligned_cols=225 Identities=23% Similarity=0.287 Sum_probs=184.1
Q ss_pred HHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-----------------------
Q 025803 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR----------------------- 72 (248)
Q Consensus 17 ~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~----------------------- 72 (248)
++|.+||.||++|+|-+.+. ++|.|||+.|.|||++|+ .||++|+..+++.-..
T Consensus 44 vLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlIAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~ 121 (346)
T COG2899 44 VLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITD 121 (346)
T ss_pred HhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHh
Confidence 78999999999999999995 799999999999999995 9999999999986543
Q ss_pred -chHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHHhhhhcc----c-------------------ccccCCCceee-
Q 025803 73 -FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIP----V-------------------TTYYDGNRFFT- 127 (248)
Q Consensus 73 -~~~i~~~gG~~Ll~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~f~~- 127 (248)
.+.+..+||.||++.+.++++|.|++.++ .||++|.+. + +.+-|...+..
T Consensus 122 aH~~IAAFGG~FLlMv~L~fffd~erd~hW-----l~~iE~~~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~A 196 (346)
T COG2899 122 AHPQIAAFGGTFLLMVFLDFFFDHERDVHW-----LKWIERPLARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIA 196 (346)
T ss_pred cCchhhhhhhHHHHHHHHHHhcCccccchh-----hhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHH
Confidence 34578999999999999999986655543 344443331 1 11111111111
Q ss_pred -------------------ccCC--ccccchHHHHHHHHHHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHHHHHH--
Q 025803 128 -------------------NQDG--MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSL-- 184 (248)
Q Consensus 128 -------------------~~~g--~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~lr~l-- 184 (248)
..++ ......-+.+.++.|+.|.+||+|.|++++|+|+|++++..|+.+|.+.+|++
T Consensus 197 gl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVLDAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi 276 (346)
T COG2899 197 GLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVLDASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITI 276 (346)
T ss_pred HHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHHhhhccccceeeeeeeccCchhheeccchhheeeeeeEE
Confidence 0000 01223457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHHHhhccCC
Q 025803 185 FTLISEGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLLSLMKKSD 248 (248)
Q Consensus 185 ~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~S~~~~~~ 248 (248)
|-+-.+.+|+|+||||++.+.++..++-|+++.--+|||++++..+.+..+.+++.+|++++|+
T Consensus 277 ~LV~kgTL~~y~yLEHGAhyAI~~Laviml~s~~~~hIpEvvTgL~Ga~fIgls~~sSv~~Nr~ 340 (346)
T COG2899 277 YLVEKGTLDEYVYLEHGAHYAIGALAVIMLLSTDRFHIPEVVTGLVGAVFIGLSLWSSVRYNRR 340 (346)
T ss_pred EEEecCcHHHHHHHhcchHHHHHHHHHHHHHhhhheehHHHHHHhhHHHHHHHHHHHHHHHhHh
Confidence 6666799999999999999999999999999874589999999999999999999999988764
No 9
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=97.91 E-value=0.0016 Score=56.83 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred HhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhccc
Q 025803 21 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASEE 96 (248)
Q Consensus 21 ~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~~~ 96 (248)
+=-..|+-++...++. .|+++|||...-....|.+.=.+|.++|.++++.| +-.+..||+.|...|++|+.+++
T Consensus 15 inP~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 15 INPIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred HhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3346789999999994 78999999999999999999999999999999653 34899999999999999998654
No 10
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.89 E-value=0.0031 Score=54.64 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhhhHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----hHHHHHHHHHH
Q 025803 11 EEYWRYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGIL 84 (248)
Q Consensus 11 ~f~~~~~lE~~LS~DNa~v-ia~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~-----~~i~~~gG~~L 84 (248)
++++..++-..+|.||..| ++.=.+. .+++. +.++..|+.... +..+++..|.+.=.-+ .|-..+|++.|
T Consensus 2 ~~~sllllA~alsmDAFav~l~~G~~~--~k~~~-~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL 77 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLGKGLAK--HKIRF-KEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLL 77 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHhhhhh--ccccH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999655 2222232 23332 445555554443 5667777766543222 36678899999
Q ss_pred HHHHHHHhhcc--cCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHH
Q 025803 85 LFSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFG 162 (248)
Q Consensus 85 l~~a~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~a 162 (248)
.+.+.+|+.+. +||++..+++ +++. + -.....+.-+.-|+|+.+..++
T Consensus 78 ~~lG~~mI~e~f~~~~~~~~~~~-----------------------~~~~-----~--~~~~~~~laiatSidal~vG~~ 127 (190)
T COG1971 78 IILGLKMIIEGFKNEEDEFVDPA-----------------------EKHD-----L--NFKELILLAIATSIDALAVGVG 127 (190)
T ss_pred HHHHHHHHHHHhchhhcchhccc-----------------------ccch-----h--hHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999864 2222211110 0010 0 0122334556779999988887
Q ss_pred hcC---Chh--HHHHH---HHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhhc
Q 025803 163 VTR---DPF--IVFSS---NLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDYF 218 (248)
Q Consensus 163 it~---~~~--li~~g---~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~~ 218 (248)
.+. |.+ .+.+| .+.+..+.-.. ..+.++..| |-|..+..+|..+|.|++.+..
T Consensus 128 ~a~lgv~i~~~av~iG~~T~il~~~G~~IG-~~~g~~~g~--~ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 128 LAFLGVNILLAAVAIGLITLILSALGAIIG-RKLGKFLGK--YAEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 765 222 22333 23333333333 344445444 5678899999999999998764
No 11
>PRK10995 inner membrane protein; Provisional
Probab=97.78 E-value=0.0048 Score=54.44 Aligned_cols=71 Identities=10% Similarity=0.153 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHHHHhhcc
Q 025803 23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR----FEAVNLVLAGILLFSSFKLFASE 95 (248)
Q Consensus 23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~----~~~i~~~gG~~Ll~~a~k~~~~~ 95 (248)
=..|+-++...++. .++++|||.-....+.|.+.=.++.+.|..+++- .+..+..||++|++.|++|++++
T Consensus 21 P~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 21 PLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred hhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45788899999984 7899999999999999988888999999999864 35789999999999999999754
No 12
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=97.66 E-value=0.0069 Score=52.87 Aligned_cols=75 Identities=13% Similarity=0.273 Sum_probs=64.4
Q ss_pred HHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhc
Q 025803 19 EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS 94 (248)
Q Consensus 19 E~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~ 94 (248)
=.+=-..|+-++...++ +.|+++|+|........|.+.=++|.+.|.++++.| +-.+..||+.|+.+|++|+..
T Consensus 16 ~iinPig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 16 AIINPIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHhCcchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445789999999999 479999999999999999988889999999999643 448999999999999999965
Q ss_pred c
Q 025803 95 E 95 (248)
Q Consensus 95 ~ 95 (248)
+
T Consensus 94 ~ 94 (201)
T TIGR00427 94 E 94 (201)
T ss_pred C
Confidence 4
No 13
>PRK10739 putative antibiotic transporter; Provisional
Probab=97.65 E-value=0.013 Score=51.18 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=62.7
Q ss_pred HhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhcc
Q 025803 21 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 95 (248)
Q Consensus 21 ~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~~ 95 (248)
+=-..|+-++...++. .|+++|||...-....|.+.=++|.+.|..+++.| +-.+..||+.|+..|++|++++
T Consensus 15 inPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 15 MDPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HhHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456799999999994 79999999999999999888889999999999653 4489999999999999999765
No 14
>PRK11469 hypothetical protein; Provisional
Probab=97.56 E-value=0.016 Score=50.14 Aligned_cols=169 Identities=13% Similarity=0.092 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhc-hHHHHHHHHHHH
Q 025803 11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL----GTATLQRF-EAVNLVLAGILL 85 (248)
Q Consensus 11 ~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~----~~~ll~~~-~~i~~~gG~~Ll 85 (248)
++++..++=..||.||..|=-..=. +.|+...++.+......+. +..+++.+ |..+-+-. ++-..+++..|+
T Consensus 2 ~~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~ 78 (188)
T PRK11469 2 NITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLI 78 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999766433221 1344444554444444443 33444443 33222111 245678899999
Q ss_pred HHHHHHhhcc--cCCCCcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHHHHHHHHHHHHHhccchhHHHHHh
Q 025803 86 FSSFKLFASE--EDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGV 163 (248)
Q Consensus 86 ~~a~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~~v~~Ie~~Dl~FSlDSV~A~~ai 163 (248)
.++.+|+.+. ++++++++.. .+ +..+ .....=+.-|+|+..+-++.
T Consensus 79 ~lG~~mi~e~~~~~~~~~~~~~-------------------------~~---~~~~----~~l~LaiAtSiDAlavGi~~ 126 (188)
T PRK11469 79 FLGGRMIIEGFRGADDEDEEPR-------------------------RR---HGFW----LLVTTAIATSLDAMAVGVGL 126 (188)
T ss_pred HHHHHHHHHHHhcccccccccc-------------------------cC---CCHH----HHHHHHHHHHHHHHHHHHHH
Confidence 9999999864 1111111100 00 0111 12233456799998887766
Q ss_pred c--C-ChhH--H---HHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHhh
Q 025803 164 T--R-DPFI--V---FSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILDY 217 (248)
Q Consensus 164 t--~-~~~l--i---~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~~ 217 (248)
+ + |++. + .++.+++..+++... .+.+...|+ .+..+..+|..+|+|++++.
T Consensus 127 ~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~-~~g~~~g~~--a~~lgG~iLI~iGi~il~~h 185 (188)
T PRK11469 127 AFLQVNIIATALAIGCATLIMSTLGMMVGR-FIGSIIGKK--AEILGGLVLIGIGVQILWTH 185 (188)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4 3 2221 1 222333444444333 333455554 57799999999999999874
No 15
>PRK11111 hypothetical protein; Provisional
Probab=97.43 E-value=0.028 Score=49.63 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=61.5
Q ss_pred hhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhcc
Q 025803 22 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 95 (248)
Q Consensus 22 LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~~ 95 (248)
==..|+-++...++. .++++|||........|.+.=..|.+.|.++++-| +-.+..||+.|+..|++|++.+
T Consensus 22 nPig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 22 NPVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred CcchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345788899999994 78999999999999999888889999999999643 4489999999999999999653
No 16
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.021 Score=50.05 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=65.2
Q ss_pred HHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHhhc
Q 025803 19 EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS 94 (248)
Q Consensus 19 E~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~----~~i~~~gG~~Ll~~a~k~~~~ 94 (248)
=.+=...|+-++..+.++ .|+++|+|+..--...|...=.+|.++|.++++-| +-.+..||..|.+.|++|+..
T Consensus 16 ~i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~ 93 (203)
T COG2095 16 AIIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFG 93 (203)
T ss_pred HHhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcC
Confidence 345567899999999995 79999999999999999988889999999999633 347899999999999999986
Q ss_pred cc
Q 025803 95 EE 96 (248)
Q Consensus 95 ~~ 96 (248)
+.
T Consensus 94 ~~ 95 (203)
T COG2095 94 PT 95 (203)
T ss_pred Cc
Confidence 53
No 17
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=97.37 E-value=0.076 Score=45.61 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHh--hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHH
Q 025803 7 RQTEEEYWRYILEQSL--SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLV 79 (248)
Q Consensus 7 ~~a~~f~~~~~lE~~L--S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~ 79 (248)
|....|+...++ ... +-||+.+.+.-.++ + ..+-.....|+..+...=......+. .++++.|| ++++
T Consensus 4 ~~~~~f~~~~~~-~~~sPGP~~~~v~~~~~~~-G---~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~ 78 (195)
T PRK10323 4 TLLSAFWTYTLI-TAMTPGPNNILALSSATSH-G---FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWA 78 (195)
T ss_pred HHHHHHHHHHHH-HhCCCChHHHHHHHHHHHh-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 444 78999999887763 2 33334566777777655555444444 45556555 7899
Q ss_pred HHHHHHHHHHHHhhcc
Q 025803 80 LAGILLFSSFKLFASE 95 (248)
Q Consensus 80 gG~~Ll~~a~k~~~~~ 95 (248)
|++||+|.|+|+++++
T Consensus 79 Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 79 GAAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999864
No 18
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.26 E-value=0.0051 Score=52.95 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Q 025803 10 EEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSS 88 (248)
Q Consensus 10 ~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a 88 (248)
....+..+.|.+.|.||+.....+.+ +......|...|+ ++|...-.+.. +++++|++.+.++++|.|+|
T Consensus 107 ~~v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~~-~l~~~p~l~~~~~~~L~~ig 177 (183)
T PF03741_consen 107 LAVIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLAK-LLERFPYLKYLAAAILGFIG 177 (183)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33455568899999999998888773 4578888988886 78877666654 67899999999999999999
Q ss_pred HHHhh
Q 025803 89 FKLFA 93 (248)
Q Consensus 89 ~k~~~ 93 (248)
.|++.
T Consensus 178 ~~li~ 182 (183)
T PF03741_consen 178 VKLIL 182 (183)
T ss_pred HHHhh
Confidence 99975
No 19
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=97.04 E-value=0.12 Score=45.00 Aligned_cols=78 Identities=24% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh----chHHHHHHHHHHHHHH
Q 025803 14 WRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG-TATLQR----FEAVNLVLAGILLFSS 88 (248)
Q Consensus 14 ~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~-~~ll~~----~~~i~~~gG~~Ll~~a 88 (248)
.....-.+=+=||..+++.-.++ -+.+-..--.|+..+...=......| +.++.. +..++++|++||+|.+
T Consensus 12 ~~~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg 87 (208)
T COG1280 12 AALVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG 87 (208)
T ss_pred HHHHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445555577999999987663 24444445555555555555555555 345544 3458999999999999
Q ss_pred HHHhhcc
Q 025803 89 FKLFASE 95 (248)
Q Consensus 89 ~k~~~~~ 95 (248)
+|++++.
T Consensus 88 ~~~~ra~ 94 (208)
T COG1280 88 WKALRAG 94 (208)
T ss_pred HHHHhcc
Confidence 9999865
No 20
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=96.95 E-value=0.018 Score=50.00 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHhhcccC
Q 025803 23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGILLFSSFKLFASEED 97 (248)
Q Consensus 23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~--~~~i~~~gG~~Ll~~a~k~~~~~~~ 97 (248)
++|+.++....|+. .+.+.|+|-..+|=..+...=+..-+.+...... -+|+.-+-|..=++.|+|.+.+.||
T Consensus 5 niDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~~~~ 79 (191)
T PF03596_consen 5 NIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFSGED 79 (191)
T ss_pred cHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 58999999999995 4555566777777333332222222222222323 3588777799999999998776443
No 21
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0082 Score=54.35 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 025803 12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 90 (248)
Q Consensus 12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k 90 (248)
..+..++|.+-|.||+....-+++ +.-+...|...|+ ++|...-.+.. +++++|++.+.+.++|.|+|.|
T Consensus 137 i~~I~i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~l~~-ll~r~p~l~~~~~~iL~~IG~k 207 (254)
T COG0861 137 IIQIELADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFLLAR-LLERHPTLKYLALVILLFIGVK 207 (254)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHH-HHHHchHHHHHHHHHHHHHHHH
Confidence 344558999999999998888775 3468899999996 88877766655 6789999999999999999999
Q ss_pred Hhhcc
Q 025803 91 LFASE 95 (248)
Q Consensus 91 ~~~~~ 95 (248)
++.+.
T Consensus 208 li~~~ 212 (254)
T COG0861 208 LILEG 212 (254)
T ss_pred HHHhh
Confidence 99875
No 22
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=96.88 E-value=0.22 Score=41.96 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhch----HHHHHHHHHHHHHHHHHhhccc
Q 025803 23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL-QRFE----AVNLVLAGILLFSSFKLFASEE 96 (248)
Q Consensus 23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll-~~~~----~i~~~gG~~Ll~~a~k~~~~~~ 96 (248)
+-+|+.++..-.++ ..++--....|...+-..=......+...+ +..+ +++++|++||+|.|++.+++..
T Consensus 8 GP~~~~~i~~~~~~----G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 8 GPVNLLVISNGLRK----GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred CHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56788888876652 122223334444444444444444444433 3233 5789999999999999998653
No 23
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=96.87 E-value=0.015 Score=51.48 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 025803 11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSF 89 (248)
Q Consensus 11 ~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~ 89 (248)
...+....|.+.|.||+.....+.+ .......|...++ ++|..--.+ +.+++++|++.+.|.++|.|+|.
T Consensus 98 av~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~ 168 (215)
T TIGR03716 98 TVLKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGV 168 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668899999999998887754 3357888888885 888776666 45778999999999999999999
Q ss_pred HHhhcc
Q 025803 90 KLFASE 95 (248)
Q Consensus 90 k~~~~~ 95 (248)
|++.+.
T Consensus 169 kLil~~ 174 (215)
T TIGR03716 169 KLLLET 174 (215)
T ss_pred HHHHHH
Confidence 999864
No 24
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.74 E-value=0.026 Score=48.27 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhccchhHHHHHhcCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhH
Q 025803 142 VAVIELSDIAFAVDSIPAVFGVTRDP------FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMIL 215 (248)
Q Consensus 142 v~~Ie~~Dl~FSlDSV~A~~ait~~~------~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll 215 (248)
+.++.+.|++.|.||.....-.|++. -....|...+. .+|...-.+...+=++|++++++..+|.++|.||+.
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~~lp~~~r~~~~~~G~~~A~-vlr~if~~~G~~ll~~~~~~iaGGllLl~ia~~ml~ 80 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAARNLPAHQRKKAIFWGTAGAI-VLRILLTAVAVYLLAIPFLKLIGGLLLLWIGWKLLL 80 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999888788742 35566665554 555555555545555899999999999999999987
Q ss_pred hh
Q 025803 216 DY 217 (248)
Q Consensus 216 ~~ 217 (248)
+.
T Consensus 81 ~~ 82 (176)
T TIGR03717 81 EE 82 (176)
T ss_pred cc
Confidence 54
No 25
>PRK10958 leucine export protein LeuE; Provisional
Probab=96.73 E-value=0.33 Score=42.21 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhchH----HHHHHHHHHHHHHHHHh
Q 025803 18 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLFSSFKLF 92 (248)
Q Consensus 18 lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~-ll~~~~~----i~~~gG~~Ll~~a~k~~ 92 (248)
.-.+=+-||+.+++.-.++ .+.+--.-..|+..+...=.....++.. +++..|+ ++++|++||+|.|+|.+
T Consensus 20 ~~~sPGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~ 95 (212)
T PRK10958 20 IVLLPGPNSLYVLSTAARR----GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML 95 (212)
T ss_pred HhcCCchHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577999999987653 1222233344555555555444444443 4434444 78999999999999999
Q ss_pred hcc
Q 025803 93 ASE 95 (248)
Q Consensus 93 ~~~ 95 (248)
+++
T Consensus 96 ~~~ 98 (212)
T PRK10958 96 RAA 98 (212)
T ss_pred Hhh
Confidence 864
No 26
>PRK09304 arginine exporter protein; Provisional
Probab=96.03 E-value=0.87 Score=39.33 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHH
Q 025803 11 EEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILL 85 (248)
Q Consensus 11 ~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll 85 (248)
-++.|+.+-..=+-||+.+.+.-.++ .+......|+..+..+=.....+|. .+++..|| ++++|++||+
T Consensus 8 g~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLl 81 (207)
T PRK09304 8 GFALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLL 81 (207)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666677999999885541 2234555566555555444433444 35556665 6889999999
Q ss_pred HHHHHHhhcc
Q 025803 86 FSSFKLFASE 95 (248)
Q Consensus 86 ~~a~k~~~~~ 95 (248)
|.|+|.++++
T Consensus 82 yLg~~~~rs~ 91 (207)
T PRK09304 82 WYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 27
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=95.63 E-value=1.4 Score=38.54 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhhHHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-h-HHHHHHHHHHHHHHHH
Q 025803 14 WRYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFK 90 (248)
Q Consensus 14 ~~~~lE~~LS~DNa~v-ia~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~-~-~i~~~gG~~Ll~~a~k 90 (248)
+..++=.++|.|+..| ++.-.+. .+. .-+..+..|+.-+. +=.+-..+|..+-+.+ + +-.++|++.|++++.+
T Consensus 2 ~i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~~-~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~ 77 (206)
T TIGR02840 2 SLLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISGL-FIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIW 77 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 3466788999999877 5443332 222 23345555554442 2222233334333222 2 4678999999999999
Q ss_pred Hhhc
Q 025803 91 LFAS 94 (248)
Q Consensus 91 ~~~~ 94 (248)
++.+
T Consensus 78 mi~~ 81 (206)
T TIGR02840 78 IIYN 81 (206)
T ss_pred HHHH
Confidence 9875
No 28
>PRK10229 threonine efflux system; Provisional
Probab=95.49 E-value=0.17 Score=43.45 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHHHHHH
Q 025803 15 RYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSF 89 (248)
Q Consensus 15 ~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll~~a~ 89 (248)
..+...+=+-||+.++..-.++ ..++--....|+..+...=.....+|. .++++.|+ ++++|++||+|.|+
T Consensus 12 ~~~~~~sPGP~~~~vi~~~~~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~ 87 (206)
T PRK10229 12 HIVALMSPGPDFFFVSQTAVSR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY 87 (206)
T ss_pred HHHHhcCCCchhHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555677999999887763 233444455666666655555544444 45555554 78999999999999
Q ss_pred HHhhcc
Q 025803 90 KLFASE 95 (248)
Q Consensus 90 k~~~~~ 95 (248)
|.+++.
T Consensus 88 ~~~~~~ 93 (206)
T PRK10229 88 QMLRGA 93 (206)
T ss_pred HHHHhc
Confidence 999854
No 29
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=95.27 E-value=1.5 Score=36.73 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHHHHHHHHhhc
Q 025803 23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKLFAS 94 (248)
Q Consensus 23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll~~a~k~~~~ 94 (248)
+-||+.++..-.++ ..++--....|+..+...=+....++. .+++..++ ++++|++||+|.|++.+++
T Consensus 3 GP~~~~~~~~~~~~----G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 3 GPNFFVVMQTSLSS----GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred CcchHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34788888776652 233334455566666555544444433 45555554 7899999999999999985
No 30
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=95.06 E-value=0.16 Score=47.09 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhccchhHHHHHhcC--------ChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcHHHHHHHHHHHHH
Q 025803 140 LTVAVIELSDIAFAVDSIPAVFGVTR--------DPFIVFSSNLFAILGLRSLF-TLISEGMADLEYLQPSIAVVLGFIG 210 (248)
Q Consensus 140 ~~v~~Ie~~Dl~FSlDSV~A~~ait~--------~~~li~~g~~~ai~~lr~l~-~~~~~~l~k~~~L~~~~~~iL~~ig 210 (248)
....+.-+.|.+.|+||+.....+.. ..-....|. .+.+++|... ..-+.++++|+++.+.+.++|.|+|
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi-~gAlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a 141 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGI-LGALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTG 141 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45677778899999999986666532 123555554 5667788774 4456778899999999999999999
Q ss_pred HHHhHhh
Q 025803 211 CKMILDY 217 (248)
Q Consensus 211 ~klll~~ 217 (248)
.||+.+.
T Consensus 142 ~k~~~~~ 148 (302)
T TIGR03718 142 IKMLFEG 148 (302)
T ss_pred HHHHhhc
Confidence 9999864
No 31
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=94.89 E-value=0.25 Score=42.44 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhchH----HHHHHHHHHHHHHHHH
Q 025803 17 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKL 91 (248)
Q Consensus 17 ~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~~----i~~~gG~~Ll~~a~k~ 91 (248)
.+-.+=+=||+.++.--.++ ..++-.....|+..+...=.....+|. .+++..|+ ++++|++||+|.|+|.
T Consensus 15 ~~~~sPGP~~~~v~~~~~~~----G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~ 90 (205)
T PRK10520 15 ILSLSPGSGAINTMSTSISH----GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQ 90 (205)
T ss_pred HHhcCCchhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567899998886652 223333344466666555545444444 35555444 7899999999999999
Q ss_pred hhcc
Q 025803 92 FASE 95 (248)
Q Consensus 92 ~~~~ 95 (248)
++++
T Consensus 91 ~~s~ 94 (205)
T PRK10520 91 WRAA 94 (205)
T ss_pred HhCC
Confidence 9864
No 32
>TIGR00948 2a75 L-lysine exporter.
Probab=94.87 E-value=0.22 Score=41.79 Aligned_cols=67 Identities=15% Similarity=0.041 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhch----HHHHHHHHHHHHHHHHHhhcc
Q 025803 23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFASE 95 (248)
Q Consensus 23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~-~ll~~~~----~i~~~gG~~Ll~~a~k~~~~~ 95 (248)
+-||+.+++.-.++ .+--....|+..+...=.+...+|. .++++.+ .++++|++||+|.|+|.+++.
T Consensus 6 GP~~~~vi~~~~~~------~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 6 GAQNAFVLRQGIRR------EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cchHHHHHHHHHcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888886662 1233455666666555544444444 3554444 478999999999999999864
No 33
>COG4280 Predicted membrane protein [Function unknown]
Probab=93.73 E-value=4.6 Score=35.70 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHhHhhcccccC-hhHHHHHHHHHHHH-HHHH
Q 025803 166 DPFIVFSSNLFAILGLRSLFTLISEGMADLE--YLQPSIAVVLGFIGCKMILDYFGFHIS-TEASLSFVATSLSA-GVLL 241 (248)
Q Consensus 166 ~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~--~L~~~~~~iL~~ig~klll~~~~~~ip-~~~~~~~i~~vl~~-~i~~ 241 (248)
+..-.+.|..++-.....+...+-.-+.|-| .+|..+...|.-.|.-=+-++.+.|.| +-...........+ ..++
T Consensus 146 qwleAi~gagfA~vlvlvl~~~lh~plarvpe~~lKfvag~lL~sfGtfWlgegvg~dwPgdeLaiL~l~a~~gl~~aii 225 (236)
T COG4280 146 QWLEAIMGAGFASVLVLVLTAILHSPLARVPEPHLKFVAGALLFSFGTFWLGEGVGFDWPGDELAILFLLAYLGLNYAII 225 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHhhCCchhHHHHHHHHHHHhhHHHhccccCCCCCchHHHHHHHHHHHHHhHHHh
Confidence 4455677888887777777777777777765 688899998888888888888889999 66666555555555 3455
Q ss_pred Hhhc
Q 025803 242 SLMK 245 (248)
Q Consensus 242 S~~~ 245 (248)
|+++
T Consensus 226 sv~W 229 (236)
T COG4280 226 SVYW 229 (236)
T ss_pred eeee
Confidence 5544
No 34
>COG2119 Predicted membrane protein [Function unknown]
Probab=93.29 E-value=4.8 Score=34.99 Aligned_cols=156 Identities=16% Similarity=0.244 Sum_probs=97.1
Q ss_pred hhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHHHHhhcccC-CC
Q 025803 24 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASEED-DT 99 (248)
Q Consensus 24 ~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~~--~i~~~gG~~Ll~~a~k~~~~~~~-~~ 99 (248)
+|.-+.++++.. -++||+-.+.|+.+|. .+-+.-...|-+..+-+| |..+..|...+-.|+|++.++.+ ++
T Consensus 17 GDKT~lia~llA-----~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~~~~ 91 (190)
T COG2119 17 GDKTQLIAMLLA-----MRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKEDDE 91 (190)
T ss_pred ccHHHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 799999999887 3667889999999995 777777777777765556 78888888888889999886532 22
Q ss_pred CcchhHHHHHhhhhcccccccCCCceeeccCCccccchHHH---HHHHHHHHHHHhccchhHHHHHhc---CChhHHHHH
Q 025803 100 DLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLL---TVAVIELSDIAFAVDSIPAVFGVT---RDPFIVFSS 173 (248)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~g~~~~t~l~~---~v~~Ie~~Dl~FSlDSV~A~~ait---~~~~li~~g 173 (248)
|++.. .+. .++.. .+..=|+=| -+=+|.++++ ++++.++.|
T Consensus 92 e~~~~-------------------------~~~---~~f~~tfi~~FlaE~GD-----KTQiATIaLaA~~~~~~~V~~G 138 (190)
T COG2119 92 EAQAA-------------------------SPR---GVFVTTFITFFLAELGD-----KTQIATIALAADYHSPWAVFAG 138 (190)
T ss_pred ccccc-------------------------ccc---cHHHHHHHHHHHHHhcc-----HHHHHHHHHhhcCCCceeeehh
Confidence 22100 000 12222 233334434 2344555554 345778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-h--hcHHHHHHHHHHHHHHHHhHhh
Q 025803 174 NLFAILGLRSLFTLISEGMAD-L--EYLQPSIAVVLGFIGCKMILDY 217 (248)
Q Consensus 174 ~~~ai~~lr~l~~~~~~~l~k-~--~~L~~~~~~iL~~ig~klll~~ 217 (248)
-.+|.+.--...-..-+++.+ . +.++..+.......|..++.+.
T Consensus 139 t~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 139 TTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766655555555444433 2 2455566666666776666654
No 35
>COG1279 Lysine efflux permease [General function prediction only]
Probab=86.59 E-value=22 Score=31.31 Aligned_cols=75 Identities=20% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhchH----HHHHHHHH
Q 025803 12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGI 83 (248)
Q Consensus 12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~----~ll~~~~~----i~~~gG~~ 83 (248)
|+-+.-+=..++..|++|+-.-.+ |++++..-+.- .+.=.+++..++ .++++.|| +.+.|.+|
T Consensus 9 fll~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c-~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F 79 (202)
T COG1279 9 FLLGASLILPIGAQNAFVLNQGIR--------REYVLPIALLC-AISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF 79 (202)
T ss_pred HHHHHHHHHhccchhHHHHHHHHh--------hccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 333444556779999999876332 34554443332 334444444433 35556666 56779999
Q ss_pred HHHHHHHHhhcc
Q 025803 84 LLFSSFKLFASE 95 (248)
Q Consensus 84 Ll~~a~k~~~~~ 95 (248)
|+|.|++-+++.
T Consensus 80 Ll~yg~~a~~~a 91 (202)
T COG1279 80 LLYYGLLALKSA 91 (202)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 36
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=75.17 E-value=15 Score=32.07 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 025803 10 EEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA----IVFRLSLILLGTATLQRFEAVNLVLAGILL 85 (248)
Q Consensus 10 ~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A----~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll 85 (248)
+.+.+...+-..=++|-.++....|++++ .+.|++=...|=... +..-..+.+ +.-.+ .-.|+.-+.|..=+
T Consensus 3 ~~~v~sivly~aTaiD~lIiL~l~Far~~--~~k~~~~I~~GQyLGs~~lilaSL~~a~-v~~fv-p~e~I~glLGLIPi 78 (205)
T COG4300 3 QTVVSSIVLYIATAIDLLIILLLFFARRK--SRKDILHIYLGQYLGSVILILASLLFAF-VLNFV-PEEWILGLLGLIPI 78 (205)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhc--ccCcEEEEeHHHHHhHHHHHHHHHHHHH-HHhhC-cHHHHHHHHhHHHH
Confidence 44566777778889999999999999643 343443333332222 111222222 22222 33688877788899
Q ss_pred HHHHHHhhcccC
Q 025803 86 FSSFKLFASEED 97 (248)
Q Consensus 86 ~~a~k~~~~~~~ 97 (248)
|.|+|....+|+
T Consensus 79 ~LGik~l~~~d~ 90 (205)
T COG4300 79 YLGIKVLILGDD 90 (205)
T ss_pred HHhhHHhhcccC
Confidence 999998875543
No 37
>PRK11469 hypothetical protein; Provisional
Probab=72.41 E-value=41 Score=28.98 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccchhHHHHHhc----CChh------HHHHHHHHHHH-HHHH-HHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 025803 143 AVIELSDIAFAVDSIPAVFGVT----RDPF------IVFSSNLFAIL-GLRS-LFTLISEGMADLEYLQPSIAVVLGFIG 210 (248)
Q Consensus 143 ~~Ie~~Dl~FSlDSV~A~~ait----~~~~------li~~g~~~ai~-~lr~-l~~~~~~~l~k~~~L~~~~~~iL~~ig 210 (248)
..+.+.=+..|+|+-...++.- +-++ ...+|..=+++ ..-+ +-..+.+++.++. ++.++.+|.++|
T Consensus 4 ~~i~llaialsmDaF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~--~~i~~~lL~~lG 81 (188)
T PRK11469 4 TATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWN--HWIAFVLLIFLG 81 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3455566788999998888765 2222 12333322222 2222 2345566666644 899999999999
Q ss_pred HHHhHhhc
Q 025803 211 CKMILDYF 218 (248)
Q Consensus 211 ~klll~~~ 218 (248)
.+|+.|.+
T Consensus 82 ~~mi~e~~ 89 (188)
T PRK11469 82 GRMIIEGF 89 (188)
T ss_pred HHHHHHHH
Confidence 99999864
No 38
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=71.38 E-value=5.5 Score=34.77 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHhhcccC
Q 025803 23 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRL--SLI-LLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 97 (248)
Q Consensus 23 S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~--ifi-~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~~~~~~ 97 (248)
.+|..++....|+. .+ +.|+|-..+|=-.....=+ -++ ..+...+ .-+|+.-+-|..=++.|+|.+.++|+
T Consensus 5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~i-P~~wIlGlLGliPI~lGi~~l~~~~~ 78 (193)
T TIGR00779 5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLI-PEKWVLGLLGLIPIYLGIKVAIKGEC 78 (193)
T ss_pred cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhHHhHHHHHHHHHHHhcccc
Confidence 57999999999874 44 5555555555433321111 111 2333233 23588777788899999988776543
No 39
>COG1971 Predicted membrane protein [Function unknown]
Probab=66.99 E-value=87 Score=27.33 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=43.4
Q ss_pred HHHHHHHHHhccchhHHHHHhc--C--Chh--HHHHHHHHHH-----HHHHHH-HHHHHHHHHhhhcHHHHHHHHHHHHH
Q 025803 143 AVIELSDIAFAVDSIPAVFGVT--R--DPF--IVFSSNLFAI-----LGLRSL-FTLISEGMADLEYLQPSIAVVLGFIG 210 (248)
Q Consensus 143 ~~Ie~~Dl~FSlDSV~A~~ait--~--~~~--li~~g~~~ai-----~~lr~l-~~~~~~~l~k~~~L~~~~~~iL~~ig 210 (248)
..+.+.-+..|.|+...+++.- . .++ ...+|.++|+ |.+-+. ...+++++..+ =++.+..+|.++|
T Consensus 4 ~sllllA~alsmDAFav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~--~~wigf~lL~~lG 81 (190)
T COG1971 4 ISLLLLAIALSMDAFAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEW--AHWIGFVLLIILG 81 (190)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4455667789999988777652 1 111 2233443333 233333 22223233222 2568999999999
Q ss_pred HHHhHhhc
Q 025803 211 CKMILDYF 218 (248)
Q Consensus 211 ~klll~~~ 218 (248)
.+|+.|.+
T Consensus 82 ~~mI~e~f 89 (190)
T COG1971 82 LKMIIEGF 89 (190)
T ss_pred HHHHHHHh
Confidence 99999875
No 40
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=61.86 E-value=32 Score=25.39 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHHHh
Q 025803 41 VMYQNRVLSYGIAGAIVFRLSLILLGTATLQ--RFEAVNLVLAGILLFSSFKLF 92 (248)
Q Consensus 41 ~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~--~~~~i~~~gG~~Ll~~a~k~~ 92 (248)
+++++|-+.|.+ .+.+|+.++.++..... -+.|....+++.|=|.|.=.-
T Consensus 11 ~d~~~R~r~Y~i--~M~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAVviA 62 (73)
T PF11298_consen 11 QDQRRRRRRYLI--MMGIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAVVIA 62 (73)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhheeec
Confidence 455566666655 45689888888777662 234567788999999998544
No 41
>PRK07668 hypothetical protein; Validated
Probab=58.29 E-value=1.5e+02 Score=27.03 Aligned_cols=76 Identities=9% Similarity=0.094 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHH--HHHHHHHHhHhhcc---cccChhHHHHHHHHHHHHHHHHH
Q 025803 168 FIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSIAVV--LGFIGCKMILDYFG---FHISTEASLSFVATSLSAGVLLS 242 (248)
Q Consensus 168 ~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~~~i--L~~ig~klll~~~~---~~ip~~~~~~~i~~vl~~~i~~S 242 (248)
.++..+..+....+|-.++--. .-+|..-+.+....+ ...+++.++...++ ++++.|.|+....+++.+.++.+
T Consensus 115 ~~~~l~i~~~~~~~r~~~fk~~-~~~~~~i~~~~~~~~p~~l~i~i~~l~k~yp~~~~~ls~~qs~il~~~~~i~~~~~~ 193 (254)
T PRK07668 115 ISLILTIIGLIFLLRMASFKSK-LTEKWFLIIYLVILIPMLLIVAIMFLNKWYGTPMLQFTQMQSYILAGLIFLITVIIN 193 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEecchHHHHHHHHHHHHHHHHH
Confidence 5667777788888888877332 223222233333332 44555555555433 57889999999999988888877
Q ss_pred hh
Q 025803 243 LM 244 (248)
Q Consensus 243 ~~ 244 (248)
.+
T Consensus 194 ~~ 195 (254)
T PRK07668 194 IY 195 (254)
T ss_pred HH
Confidence 64
No 42
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=57.78 E-value=54 Score=30.26 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=49.4
Q ss_pred HHHHHHhccchhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhcHHHHHHHHHHHHHHHHhHhhc
Q 025803 146 ELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGM-----ADLEYLQPSIAVVLGFIGCKMILDYF 218 (248)
Q Consensus 146 e~~Dl~FSlDSV~A~~ait~~~~li~~g~~~ai~~lr~l~~~~~~~l-----~k~~~L~~~~~~iL~~ig~klll~~~ 218 (248)
|+=|=+|= |.|..|+-++-..++.|..-+...|-.++..+-+.- ++|. .|.+-.+..+-|+||+.+++
T Consensus 80 EiGDKTFf---iAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T--~~~~t~LF~iFGlkmL~eg~ 152 (294)
T KOG2881|consen 80 EIGDKTFF---IAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYT--YYLATALFLIFGLKMLKEGW 152 (294)
T ss_pred eccchHHH---HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 44455552 445566767778899999888888888887776655 2333 37777888889999999975
No 43
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=55.54 E-value=89 Score=27.17 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHHHHhccchhHHHHHhcC-C---hh--HHHHHHHHHHHHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHhHh
Q 025803 146 ELSDIAFAVDSIPAVFGVTR-D---PF--IVFSSNLFAILGLRSLFTLISEGMADLE---YLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 146 e~~Dl~FSlDSV~A~~ait~-~---~~--li~~g~~~ai~~lr~l~~~~~~~l~k~~---~L~~~~~~iL~~ig~klll~ 216 (248)
.+.=+.-|+|+-.+.++..- + ++ .+..|.+-+++. .....+.+.+.++- +=++.+..+|.++|.+|+.|
T Consensus 4 ~llaials~Daf~vgi~~G~~~~~~~~~~~l~ig~~~~~~~--~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~ 81 (206)
T TIGR02840 4 LLLAFAVSLDSFGVGIAYGLRKIKIPFLSNLIIAVISGLFI--FISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYN 81 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Confidence 34456789998777776532 1 12 234444333322 22233333444332 45789999999999999997
Q ss_pred hc
Q 025803 217 YF 218 (248)
Q Consensus 217 ~~ 218 (248)
.+
T Consensus 82 ~~ 83 (206)
T TIGR02840 82 AF 83 (206)
T ss_pred HH
Confidence 63
No 44
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=50.73 E-value=51 Score=26.31 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=34.9
Q ss_pred hhHHHHHhcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHH
Q 025803 156 SIPAVFGVTRDPF----IVFSSNLFAILGLRSLFTLISEGMADLEYLQP 200 (248)
Q Consensus 156 SV~A~~ait~~~~----li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~ 200 (248)
+||.+.+.--|++ +.+.||++.++.+-.+...+.++++|.|+++.
T Consensus 5 aIP~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~ 53 (121)
T PF06695_consen 5 AIPLGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKK 53 (121)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4666666655653 45889999999999998888888888888775
No 45
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=44.20 E-value=58 Score=27.44 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHH
Q 025803 205 VLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVL 240 (248)
Q Consensus 205 iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~ 240 (248)
+..+.+.-.+.+..++++|.|+.+.+..+.|.+|++
T Consensus 77 ~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gll 112 (153)
T PF11947_consen 77 VAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLL 112 (153)
T ss_pred HHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHH
Confidence 344455555555556899999999888888877653
No 46
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=43.91 E-value=71 Score=29.66 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 025803 74 EAVNLVLAGILLFSSFKLF 92 (248)
Q Consensus 74 ~~i~~~gG~~Ll~~a~k~~ 92 (248)
.+++.+||+||-|=|..-.
T Consensus 88 tplLmlGG~yLcfEGaEKv 106 (295)
T PF05661_consen 88 TPLLMLGGAYLCFEGAEKV 106 (295)
T ss_pred HHHHHHhHHHHHHhHHHHH
Confidence 4577999999999997443
No 47
>PRK14013 hypothetical protein; Provisional
Probab=40.42 E-value=1.6e+02 Score=27.92 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH
Q 025803 9 TEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA-GAIVFRLSLILLGTA-TLQRFEAVNLVLAGILLF 86 (248)
Q Consensus 9 a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~-~A~vlR~ifi~~~~~-ll~~~~~i~~~gG~~Ll~ 86 (248)
...|+..=++|.+-|.|++...-.+++ +......|.. +++.+|..-..+.-. .+++++.+..-....+.+
T Consensus 222 ~~~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~ 293 (338)
T PRK14013 222 LGGFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGA 293 (338)
T ss_pred HHHHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHH
Confidence 345666668999999999876544443 3466666664 457999884433332 467899988888888899
Q ss_pred HHHHHhhc
Q 025803 87 SSFKLFAS 94 (248)
Q Consensus 87 ~a~k~~~~ 94 (248)
+|.||+.+
T Consensus 294 lgvkmll~ 301 (338)
T PRK14013 294 LAVIMLLS 301 (338)
T ss_pred HHHHHHHh
Confidence 99999986
No 48
>COG2119 Predicted membrane protein [Function unknown]
Probab=39.48 E-value=1.5e+02 Score=25.90 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=49.7
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--cHHHHHHHHHHHHHHHHhHhhc
Q 025803 160 VFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADL-E--YLQPSIAVVLGFIGCKMILDYF 218 (248)
Q Consensus 160 ~~ait~~~~li~~g~~~ai~~lr~l~~~~~~~l~k~-~--~L~~~~~~iL~~ig~klll~~~ 218 (248)
..|.-..++.+++|...+...|-.++..+-+..--+ | ++.+.....-...|+||+.++.
T Consensus 26 llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk 87 (190)
T COG2119 26 LLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDK 87 (190)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 345555688999999999999999999999888777 5 7888888888889999999874
No 49
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=38.74 E-value=52 Score=23.11 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=25.5
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 025803 3 RACIRQTEEEYWRYILEQSLSVDNLFVFV-LIFKYFKVPVMYQNRVLSY 50 (248)
Q Consensus 3 ~~~~~~a~~f~~~~~lE~~LS~DNa~via-~i~~~f~lp~~~q~~~l~~ 50 (248)
|.|.+.+..|=+- -||++-.. .-.+..++|+++||.+|.|
T Consensus 10 R~~~~~~~kf~~~--------w~~lf~~~s~~LK~~GIp~r~RryiL~~ 50 (57)
T PF09597_consen 10 RGCEEHAEKFESD--------WEKLFTTSSKQLKELGIPVRQRRYILRW 50 (57)
T ss_pred ccHHHHHHHHHHH--------HHHHHhcCHHHHHHCCCCHHHHHHHHHH
Confidence 4555655555332 25555543 3356779999999988866
No 50
>KOG1688 consensus Golgi proteins involved in ER retention (RER) [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.74 E-value=2.3e+02 Score=24.59 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhcc
Q 025803 39 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 95 (248)
Q Consensus 39 lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~~~~ 95 (248)
.|....|++...|+..-+..|+ ++++.|-.+-|.-|+||+-.-+-++..+
T Consensus 36 tPh~~~RW~~tl~l~~iy~iRi-------~~~~G~YII~Y~LgIYlLNlfiaFLtPk 85 (188)
T KOG1688|consen 36 TPHTAVRWVVTLVLLLIYCIRI-------YLVQGFYIITYALGIYLLNLFIAFLTPK 85 (188)
T ss_pred CCcchhhHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5777777777777777677774 4555555678888999998888887654
No 51
>TIGR00948 2a75 L-lysine exporter.
Probab=35.08 E-value=1.8e+02 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=17.5
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhh
Q 025803 195 LEYLQPSIAVVLGFIGCKMILDY 217 (248)
Q Consensus 195 ~~~L~~~~~~iL~~ig~klll~~ 217 (248)
+..+++.+..+|.|+|.|+.-+.
T Consensus 55 ~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 55 LAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888887754
No 52
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=33.92 E-value=3.5e+02 Score=25.10 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHh-----hhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc--hHHHHH
Q 025803 8 QTEEEYWRYILEQSL-----SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRF--EAVNLV 79 (248)
Q Consensus 8 ~a~~f~~~~~lE~~L-----S~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~-vlR~ifi~~~~~ll~~~--~~i~~~ 79 (248)
.+.+|+.++..-.++ =+|--+++|.+.+. ++-|.-.+-|-..|+ +|-++-..+|-..-+-+ .|..++
T Consensus 61 ~~~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAm-----r~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~ 135 (294)
T KOG2881|consen 61 TASSFLQGFTASISMIFVSEIGDKTFFIAALMAM-----RYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYL 135 (294)
T ss_pred chHHHHHHHHHhhheeeeeeccchHHHHHHHHHh-----hccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHH
Confidence 445566666543332 26999999988873 444566778888886 44444333332221122 366788
Q ss_pred HHHHHHHHHHHHhhcc
Q 025803 80 LAGILLFSSFKLFASE 95 (248)
Q Consensus 80 gG~~Ll~~a~k~~~~~ 95 (248)
+++..+.-|+|++++.
T Consensus 136 ~t~LF~iFGlkmL~eg 151 (294)
T KOG2881|consen 136 ATALFLIFGLKMLKEG 151 (294)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888888754
No 53
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=33.85 E-value=1.9e+02 Score=23.79 Aligned_cols=47 Identities=11% Similarity=-0.034 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhh----cHHHHHHHHHHHHHHHHhHh
Q 025803 170 VFSSNLFAILGLRSL-FTLISEGMADLE----YLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 170 i~~g~~~ai~~lr~l-~~~~~~~l~k~~----~L~~~~~~iL~~ig~klll~ 216 (248)
...|..+|-...-.+ +.-+..+++.+| .++..++.+|.|.|.++.-+
T Consensus 24 ~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 24 TILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444333 233444555444 46777777788888887763
No 54
>PRK10229 threonine efflux system; Provisional
Probab=32.42 E-value=2e+02 Score=24.29 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=11.5
Q ss_pred cHHHHHHHHHHHHHHHHhHh
Q 025803 197 YLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 197 ~L~~~~~~iL~~ig~klll~ 216 (248)
.+++.+..+|.|.|.++.-+
T Consensus 73 ~l~~~Ga~yLlylg~~~~~~ 92 (206)
T PRK10229 73 IIMVGGGLYLCWMGYQMLRG 92 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666665543
No 55
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.01 E-value=2.5e+02 Score=26.31 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHhccchhHHHHHhcCC--h-h---HHHHHHHHHHHHHHHHHHHHHH-------------------
Q 025803 136 TPLLLTVAVIELSDIAFAVDSIPAVFGVTRD--P-F---IVFSSNLFAILGLRSLFTLISE------------------- 190 (248)
Q Consensus 136 t~l~~~v~~Ie~~Dl~FSlDSV~A~~ait~~--~-~---li~~g~~~ai~~lr~l~~~~~~------------------- 190 (248)
+.++.|. ...+..++.|+||-+-=.++-++ + | -.-.|..+++.+||..+.++.-
T Consensus 34 ~~l~i~~-vLavLEiSLSFDNAIvNA~iLk~MS~~Wqk~FLT~GIlIAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P 112 (346)
T COG2899 34 TALFICA-VLAVLEISLSFDNAIVNAAILKDMSPFWQKRFLTWGILIAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPP 112 (346)
T ss_pred HHHHHHH-HHHHhhhheechHHHhhHHHHHhccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCc
Confidence 3455544 36778899999998777777664 2 2 3567999999999999876642
Q ss_pred ------HHHhhhcHHHHHHHHHHHHHHHHhHh
Q 025803 191 ------GMADLEYLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 191 ------~l~k~~~L~~~~~~iL~~ig~klll~ 216 (248)
+.+.||-+.--+.-+|..++.+-..+
T Consensus 113 ~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd 144 (346)
T COG2899 113 ESYAKIITDAHPQIAAFGGTFLLMVFLDFFFD 144 (346)
T ss_pred HHHHHHHHhcCchhhhhhhHHHHHHHHHHhcC
Confidence 34556767666777888899998887
No 56
>PRK10062 hypothetical protein; Provisional
Probab=30.22 E-value=1.9e+02 Score=27.00 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 025803 74 EAVNLVLAGILLFSSFKLF 92 (248)
Q Consensus 74 ~~i~~~gG~~Ll~~a~k~~ 92 (248)
.+++.+||.||-|=|..-+
T Consensus 88 tpLLMlGG~yLcfEGaEKv 106 (303)
T PRK10062 88 TPLLMIGGAFLCFEGVEKV 106 (303)
T ss_pred HHHHHHhHHHHHHhhHHHH
Confidence 4577999999999997443
No 57
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.08 E-value=2.4e+02 Score=19.53 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHH
Q 025803 74 EAVNLVLAGILLFS 87 (248)
Q Consensus 74 ~~i~~~gG~~Ll~~ 87 (248)
++..++||+.|+.+
T Consensus 53 ~~~~~igg~iLi~i 66 (67)
T PF02659_consen 53 SYAEWIGGIILIFI 66 (67)
T ss_pred HHHHHHHHHHHHHH
Confidence 35778889888765
No 58
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=24.99 E-value=2.8e+02 Score=23.45 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHHHHHhHh
Q 025803 197 YLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 197 ~L~~~~~~iL~~ig~klll~ 216 (248)
.+++.++..|.|.|.|++-+
T Consensus 74 vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 74 LLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46677888888888887653
No 59
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.97 E-value=4.6e+02 Score=22.43 Aligned_cols=68 Identities=7% Similarity=0.007 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhcHHHHH---HHHHHHHHHHHhHh----hcccccChhHHHHHHHHHHHHH
Q 025803 170 VFSSNLFAILGLRSLFTLISE---GMADLEYLQPSI---AVVLGFIGCKMILD----YFGFHISTEASLSFVATSLSAG 238 (248)
Q Consensus 170 i~~g~~~ai~~lr~l~~~~~~---~l~k~~~L~~~~---~~iL~~ig~klll~----~~~~~ip~~~~~~~i~~vl~~~ 238 (248)
+..+.+.| ..+...+..+.+ --+|.++.++.. ...+.|+++-.+.+ .....+|.|+...+.++.+++.
T Consensus 117 i~~~i~~G-~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~ 194 (206)
T PF06570_consen 117 ILVSIVGG-LVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR 194 (206)
T ss_pred HHHHHHHH-HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH
Confidence 34443333 344445544443 344555555533 33333333333322 2346788888876555555443
No 60
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=22.84 E-value=4.3e+02 Score=21.69 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.7
Q ss_pred hhcHHHHHHHHHHHHHHHHhHhhc
Q 025803 195 LEYLQPSIAVVLGFIGCKMILDYF 218 (248)
Q Consensus 195 ~~~L~~~~~~iL~~ig~klll~~~ 218 (248)
...++..+..+|.++|.+++-+..
T Consensus 59 ~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 59 FMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 445678889999999999998754
No 61
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=22.61 E-value=78 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhccC
Q 025803 223 STEASLSFVATSLSAGVLLSLMKKS 247 (248)
Q Consensus 223 p~~~~~~~i~~vl~~~i~~S~~~~~ 247 (248)
=.|.++++.+++++.-++.|..+.|
T Consensus 7 yVW~sYg~t~l~l~~li~~~~~~~r 31 (45)
T TIGR03141 7 YVWLAYGITALVLAGLILWSLLDRR 31 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888876654
No 62
>PF10797 YhfT: Protein of unknown function; InterPro: IPR019733 This entry contains predicted inner membrane proteins, whose function is unknown.
Probab=22.60 E-value=1.5e+02 Score=28.92 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=26.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q 025803 164 TRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQPSI 202 (248)
Q Consensus 164 t~~~~li~~g~~~ai~~lr~l~~~~~~~l~k~~~L~~~~ 202 (248)
+.||++.......-+..=..+-..+.|++||||-++..+
T Consensus 307 ~pNp~vA~i~Ga~v~~~EV~lL~~iak~LdkfPgvr~~g 345 (420)
T PF10797_consen 307 APNPIVAAILGALVMFLEVLLLSSIAKFLDKFPGVRDSG 345 (420)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhh
Confidence 357887655444444444555667889999999987654
No 63
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=22.27 E-value=3.4e+02 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=22.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHHhHhh
Q 025803 189 SEGMADLEYLQPSIAVVLGFIGCKMILDY 217 (248)
Q Consensus 189 ~~~l~k~~~L~~~~~~iL~~ig~klll~~ 217 (248)
...=.-|..+++.++.+|.|+|.|++-+.
T Consensus 66 ~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 66 ATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344466789999999999999998853
No 64
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=22.05 E-value=3.5e+02 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=15.8
Q ss_pred hhcHHHHHHHHHHHHHHHHhHh
Q 025803 195 LEYLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 195 ~~~L~~~~~~iL~~ig~klll~ 216 (248)
+..+++.+..+|.|+|.|++-+
T Consensus 72 ~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 72 FEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3456777778888888877754
No 65
>COG2354 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.79 E-value=1e+02 Score=28.52 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 025803 43 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 92 (248)
Q Consensus 43 ~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~~i~~~gG~~Ll~~a~k~~ 92 (248)
.|+|.++. .+|.++-...+++ + .+++.+||+||-|=+..-+
T Consensus 66 l~NK~Ilv--P~ALllSaFaPwa----i---tPLLmlGG~yLcFEG~EKv 106 (303)
T COG2354 66 LRNKLILV--PAALLLSAFAPWA----I---TPLLMLGGAYLCFEGAEKV 106 (303)
T ss_pred cccchhhh--hHHHHHHHHhHHH----H---HHHHHhcchhhhhccHHHH
Confidence 46666665 5555433333222 2 3477999999999887433
No 66
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.72 E-value=4.7e+02 Score=25.60 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=43.8
Q ss_pred HhhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHH--HHHHHHHhhcc
Q 025803 21 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR---FEAVNLVLAGIL--LFSSFKLFASE 95 (248)
Q Consensus 21 ~LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~---~~~i~~~gG~~L--l~~a~k~~~~~ 95 (248)
..|+|.-.+-.+..++ -|+++|.+....=..+....=++-.-++.++.+. |+++.|+.|+.- .+..|-.+..+
T Consensus 141 ~~g~~~pa~~~i~~~W--~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKW--APPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHhHHHhhhhceeeeE--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577888888888887 6988887776555555532222323234445555 777888876654 33334444443
No 67
>PRK10692 hypothetical protein; Provisional
Probab=21.67 E-value=3.7e+02 Score=20.70 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHH
Q 025803 201 SIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLL 241 (248)
Q Consensus 201 ~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~ 241 (248)
+....++-+|..++-+.+....|+....+.+..+|+-++++
T Consensus 17 Gmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAllW 57 (92)
T PRK10692 17 GLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALLW 57 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHHH
Confidence 33445566777777777788889988888888888776654
No 68
>PRK10995 inner membrane protein; Provisional
Probab=21.46 E-value=4.5e+02 Score=22.91 Aligned_cols=63 Identities=11% Similarity=0.263 Sum_probs=38.1
Q ss_pred cchhHHHHHhcCCh------hHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHhHh
Q 025803 154 VDSIPAVFGVTRDP------FIVFSSNLFA----ILGLRSLFTLISEGMADLEYLQPSIAVVLGFIGCKMILD 216 (248)
Q Consensus 154 lDSV~A~~ait~~~------~li~~g~~~a----i~~lr~l~~~~~~~l~k~~~L~~~~~~iL~~ig~klll~ 216 (248)
+.|+|--.++|++. -+..-+.+.+ +...-.+...+.-+=-..|.++.++..+|.++|.+|+.+
T Consensus 22 ~g~~pif~~lt~~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~ 94 (221)
T PRK10995 22 LTTVALFLGLSGNMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFP 94 (221)
T ss_pred hhhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777778888741 1222222222 222233333333333455889999999999999999854
No 69
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.33 E-value=82 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccC
Q 025803 224 TEASLSFVATSLSAGVLLSLMKKS 247 (248)
Q Consensus 224 ~~~~~~~i~~vl~~~i~~S~~~~~ 247 (248)
.|.++++.+++++.-++.|..+.|
T Consensus 7 VW~sYg~t~~~l~~l~~~~~~~~r 30 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVWSLRRRR 30 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888876644
No 70
>PF14036 YlaH: YlaH-like protein
Probab=20.74 E-value=3.7e+02 Score=20.11 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=35.9
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHH
Q 025803 190 EGMADLEYLQPSIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSA 237 (248)
Q Consensus 190 ~~l~k~~~L~~~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~ 237 (248)
++-+|.|.+|.....++..+|.-++.- +++..|..-++.+.+.++..
T Consensus 26 gFA~kLpilK~vivYi~L~iG~~vLtf-l~~~lPi~e~L~VAaliL~i 72 (77)
T PF14036_consen 26 GFARKLPILKNVIVYILLAIGCFVLTF-LAVFLPIIEGLVVAALILGI 72 (77)
T ss_pred HHHHHchHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence 445599999999999999999877653 44568888777777666543
No 71
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=20.55 E-value=3.7e+02 Score=20.58 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhHhhcccccChhHHHHHHHHHHHHHHHH
Q 025803 201 SIAVVLGFIGCKMILDYFGFHISTEASLSFVATSLSAGVLL 241 (248)
Q Consensus 201 ~~~~iL~~ig~klll~~~~~~ip~~~~~~~i~~vl~~~i~~ 241 (248)
+....++-+|..++-+.+....|+....+.+..+|+-++++
T Consensus 17 Gmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGAllW 57 (89)
T PF10762_consen 17 GMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGALLW 57 (89)
T ss_pred hHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHHHHH
Confidence 33444566677777777778899998888888888776654
Done!