Query 025803
Match_columns 248
No_of_seqs 113 out of 1050
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 17:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 11.9 6.6E+02 0.023 21.2 10.2 53 172-224 36-95 (286)
2 2ke4_A CDC42-interacting prote 11.4 1E+02 0.0036 22.7 1.7 11 38-48 10-20 (98)
3 1upt_B Golgi autoantigen, golg 10.0 4.3E+02 0.015 17.8 4.5 41 8-48 5-45 (60)
4 1afo_A Glycophorin A; integral 9.6 3.7E+02 0.013 16.7 3.8 24 168-191 13-36 (40)
5 3udc_A Small-conductance mecha 7.4 9.9E+02 0.034 20.0 10.5 26 197-222 67-92 (285)
6 3arc_L Photosystem II reaction 7.1 2.7E+02 0.0094 16.9 2.0 23 39-61 8-30 (37)
7 2l9u_A Receptor tyrosine-prote 6.6 4.2E+02 0.014 16.0 2.7 16 76-91 20-35 (40)
8 3bkd_A Transmembrane domain of 6.3 3.7E+02 0.013 15.0 2.2 15 166-181 3-17 (26)
9 2wh0_Q Pkcev3, protein kinase 5.5 1.8E+02 0.0061 16.7 0.5 9 18-26 22-30 (31)
10 1pw4_A Glycerol-3-phosphate tr 5.5 1.3E+03 0.043 19.3 19.6 51 22-74 133-183 (451)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=11.93 E-value=6.6e+02 Score=21.23 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHhHhhcccccCh
Q 025803 172 SSNLFAILGLRSLFTLISEGMADL-------EYLQPSIAVVLGFIGCKMILDYFGFHIST 224 (248)
Q Consensus 172 ~g~~~ai~~lr~l~~~~~~~l~k~-------~~L~~~~~~iL~~ig~klll~~~~~~ip~ 224 (248)
.-.+++....|.....+.+.++|. +.+......++..+++-+++..+|+++..
T Consensus 36 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~ 95 (286)
T 2vv5_A 36 AIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTAS 95 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 334455566676666666666553 34666777778888888888877766543
No 2
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=11.38 E-value=1e+02 Score=22.74 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=9.0
Q ss_pred CCCHHHHHHHH
Q 025803 38 KVPVMYQNRVL 48 (248)
Q Consensus 38 ~lp~~~q~~~l 48 (248)
.+||+||++.|
T Consensus 10 ~LPpeqRkkkL 20 (98)
T 2ke4_A 10 HLPPEQQRKRL 20 (98)
T ss_dssp SSCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 48999999874
No 3
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=9.96 E-value=4.3e+02 Score=17.81 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHH
Q 025803 8 QTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL 48 (248)
Q Consensus 8 ~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l 48 (248)
+=.||+--++.|+..+-+.--..-.|..-.+.|++|.++++
T Consensus 5 an~EYLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~il 45 (60)
T 1upt_B 5 TEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKIL 45 (60)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34678888999999988764333333333346888887775
No 4
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=9.55 E-value=3.7e+02 Score=16.68 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 025803 168 FIVFSSNLFAILGLRSLFTLISEG 191 (248)
Q Consensus 168 ~li~~g~~~ai~~lr~l~~~~~~~ 191 (248)
.++++|.+.|+.+...+-.+..+-
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888774444433
No 5
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=7.37 E-value=9.9e+02 Score=20.02 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHHHHhHhhccccc
Q 025803 197 YLQPSIAVVLGFIGCKMILDYFGFHI 222 (248)
Q Consensus 197 ~L~~~~~~iL~~ig~klll~~~~~~i 222 (248)
.++.....++..+++-++++.+|+++
T Consensus 67 ~~~~~~~~~i~~~~~~~~l~~~g~~~ 92 (285)
T 3udc_A 67 LTKNAVRYIIYFLAGASILKLFNIDM 92 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 35556677788888888887776654
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.05 E-value=2.7e+02 Score=16.92 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 025803 39 VPVMYQNRVLSYGIAGAIVFRLS 61 (248)
Q Consensus 39 lp~~~q~~~l~~Gi~~A~vlR~i 61 (248)
.|-+.-|--|.||++.-+++-++
T Consensus 8 q~VELNRTSLy~GLLlifvlavl 30 (37)
T 3arc_L 8 QPVELNRTSLYLGLLLILVLALL 30 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CcceechhhHHHHHHHHHHHHHH
Confidence 45566778899999876655443
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.63 E-value=4.2e+02 Score=16.03 Aligned_cols=16 Identities=6% Similarity=0.083 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 025803 76 VNLVLAGILLFSSFKL 91 (248)
Q Consensus 76 i~~~gG~~Ll~~a~k~ 91 (248)
.+.+||.||-|-+-++
T Consensus 20 f~~lg~tflywrgrrh 35 (40)
T 2l9u_A 20 FMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhCceeEEEccccc
Confidence 4578999999988765
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=6.30 E-value=3.7e+02 Score=15.00 Aligned_cols=15 Identities=40% Similarity=0.809 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHHH
Q 025803 166 DPFIVFSSNLFAILGL 181 (248)
Q Consensus 166 ~~~li~~g~~~ai~~l 181 (248)
||. ++.++++||+=+
T Consensus 3 Dpl-v~aa~iiGilHL 17 (26)
T 3bkd_A 3 DPL-VVAASIMGILHL 17 (26)
T ss_dssp CHH-HHHHHHHHHHHH
T ss_pred Ccc-hhHHHHHHHHHH
Confidence 443 445778887644
No 9
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=5.50 E-value=1.8e+02 Score=16.68 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=6.7
Q ss_pred HHHHhhhhH
Q 025803 18 LEQSLSVDN 26 (248)
Q Consensus 18 lE~~LS~DN 26 (248)
+...||.||
T Consensus 22 irkalsfdn 30 (31)
T 2wh0_Q 22 IRKALSFDN 30 (31)
T ss_pred HHHHhcccc
Confidence 456788887
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=5.49 E-value=1.3e+03 Score=19.31 Aligned_cols=51 Identities=10% Similarity=-0.170 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 025803 22 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 74 (248)
Q Consensus 22 LS~DNa~via~i~~~f~lp~~~q~~~l~~Gi~~A~vlR~ifi~~~~~ll~~~~ 74 (248)
.+.-+....+.+.+. .|+++|.++.-+--.+.-+.-++...++.++++.+.
T Consensus 133 ~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHTHHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred hhhccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777888886 577777766554433444555666677777666544
Done!