Query 025803
Match_columns 248
No_of_seqs 113 out of 1050
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 17:56:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025803.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025803hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 14.1 1.5E+02 0.011 18.7 9.2 51 174-224 12-69 (86)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 13.0 57 0.0041 18.4 2.0 24 39-62 8-31 (37)
3 d1be3k_ f.23.15.1 (K:) Subunit 8.9 1.2E+02 0.0088 15.4 2.3 16 43-58 3-18 (26)
4 d1uptb_ a.193.1.1 (B:) Golgi a 4.0 4.5E+02 0.033 16.0 4.5 36 10-48 5-43 (58)
5 d1dxsa_ a.60.1.2 (A:) C-termin 3.5 1.8E+02 0.013 17.3 1.1 14 36-49 39-52 (57)
6 d1wfza_ d.224.1.2 (A:) Iron-su 3.2 3.7E+02 0.027 18.6 2.9 42 3-48 63-104 (130)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 3.0 9.1E+02 0.067 17.8 18.1 28 20-49 128-155 (447)
8 d1q90r_ f.23.12.1 (R:) ISP sub 2.2 6.2E+02 0.045 14.0 3.1 21 38-58 3-23 (39)
9 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.2 7.3E+02 0.053 14.7 2.9 25 194-218 24-48 (56)
10 d1i2ta_ a.144.1.1 (A:) hyperpl 2.1 5.1E+02 0.037 15.6 2.1 28 12-47 23-50 (61)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=14.07 E-value=1.5e+02 Score=18.72 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHhHhhcccccCh
Q 025803 174 NLFAILGLRSLFTLISEGMADL-------EYLQPSIAVVLGFIGCKMILDYFGFHIST 224 (248)
Q Consensus 174 ~~~ai~~lr~l~~~~~~~l~k~-------~~L~~~~~~iL~~ig~klll~~~~~~ip~ 224 (248)
..++....|.....+.+.++|. +.+....-..+..+++-+.++..|+++.+
T Consensus 12 l~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~ 69 (86)
T d2vv5a3 12 IIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTAS 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4556666777777777777763 23566777888899999999988887654
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.97 E-value=57 Score=18.41 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 025803 39 VPVMYQNRVLSYGIAGAIVFRLSL 62 (248)
Q Consensus 39 lp~~~q~~~l~~Gi~~A~vlR~if 62 (248)
.|-+.-|--|.||++.-+++-++|
T Consensus 8 q~veLNrtsLy~GlLlifvl~vLF 31 (37)
T d2axtl1 8 QPVELNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhhHHHHHHHHHHHHHHH
Confidence 466677888999998776655443
No 3
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.90 E-value=1.2e+02 Score=15.41 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025803 43 YQNRVLSYGIAGAIVF 58 (248)
Q Consensus 43 ~q~~~l~~Gi~~A~vl 58 (248)
+-+.+-+||-.||+.+
T Consensus 3 wvptaqlwgavgavgl 18 (26)
T d1be3k_ 3 WVPTAQLWGAVGAVGL 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhhhcceeE
Confidence 4456678999888754
No 4
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.01 E-value=4.5e+02 Score=15.95 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhhHHH---HHHHHhCCCCCCHHHHHHHH
Q 025803 10 EEEYWRYILEQSLSVDNLF---VFVLIFKYFKVPVMYQNRVL 48 (248)
Q Consensus 10 ~~f~~~~~lE~~LS~DNa~---via~i~~~f~lp~~~q~~~l 48 (248)
.||+--++-|+.++=.|.. |++.+.+ -|++|-+++|
T Consensus 5 ~EYLRnvLfeYMmG~E~~tlaKVi~av~k---F~~~Q~q~iL 43 (58)
T d1uptb_ 5 FEYLRKVLFEYMMGRETKTMAKVITTVLK---FPDDQTQKIL 43 (58)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHTT---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhHHHHHHHHHHh---CCHHHHHHHH
Confidence 4678888899998887755 5666665 5888888775
No 5
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.49 E-value=1.8e+02 Score=17.27 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHHHH
Q 025803 36 YFKVPVMYQNRVLS 49 (248)
Q Consensus 36 ~f~lp~~~q~~~l~ 49 (248)
.+++|..+|+|.+.
T Consensus 39 ~lGI~~~hr~kilk 52 (57)
T d1dxsa_ 39 ALKIPEQYRMTIWR 52 (57)
T ss_dssp HTTCCTTTHHHHHH
T ss_pred HcCCCHHHHHHHHH
Confidence 35788878887753
No 6
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=3.20 E-value=3.7e+02 Score=18.63 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=27.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHHH
Q 025803 3 RACIRQTEEEYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL 48 (248)
Q Consensus 3 ~~~~~~a~~f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~l 48 (248)
.|+.....+.+.|=-+|-++.++|--+...+ ++||.++|.+.
T Consensus 63 ~AsaS~~tel~~Gkt~~ea~~i~~~~i~~~l----~l~p~R~~CA~ 104 (130)
T d1wfza_ 63 IASSSLATEWVKGKTVEEALTIKNTDIAKEL----CLPPVKLHCSM 104 (130)
T ss_dssp HHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH----TCCGGGHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHhcCcHHHHHHc----CCCcchhhHHH
Confidence 3455555666666667778888888776654 47887666653
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.98 E-value=9.1e+02 Score=17.78 Aligned_cols=28 Identities=4% Similarity=-0.184 Sum_probs=18.1
Q ss_pred HHhhhhHHHHHHHHhCCCCCCHHHHHHHHH
Q 025803 20 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 49 (248)
Q Consensus 20 ~~LS~DNa~via~i~~~f~lp~~~q~~~l~ 49 (248)
...+.......+.+.+. .|+++|.++.-
T Consensus 128 ~~~~~~~~~~~~~i~~~--~~~~~r~~~~~ 155 (447)
T d1pw4a_ 128 WFQGMGWPPCGRTMVHW--WSQKERGGIVS 155 (447)
T ss_dssp HHHHHTHHHHHHHHHTT--CTTTHHHHHHH
T ss_pred HhhhhhhhHHHHHHHHH--HHhhccccccc
Confidence 33455666677777776 57777776653
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.24 E-value=6.2e+02 Score=14.04 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 025803 38 KVPVMYQNRVLSYGIAGAIVF 58 (248)
Q Consensus 38 ~lp~~~q~~~l~~Gi~~A~vl 58 (248)
++|...||..+..=++||+..
T Consensus 3 ~VpDMgrR~~MNLll~G~~~~ 23 (39)
T d1q90r_ 3 EVPDMNKRNIMNLILAGGAGL 23 (39)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhccch
Confidence 589899999988877777643
No 9
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.18 E-value=7.3e+02 Score=14.74 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=19.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHhHhhc
Q 025803 194 DLEYLQPSIAVVLGFIGCKMILDYF 218 (248)
Q Consensus 194 k~~~L~~~~~~iL~~ig~klll~~~ 218 (248)
-|.|+-.++..++.-.|.|-..+++
T Consensus 24 ~fsY~mvGs~g~~~a~~AKstV~~F 48 (56)
T d3cx5e2 24 SYAYFMVGAMGLLSSAGAKSTVETF 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeehhHHHHHHHHHHHHHHH
Confidence 4677778888888888888877765
No 10
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.09 E-value=5.1e+02 Score=15.63 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCCCCCHHHHHHH
Q 025803 12 EYWRYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV 47 (248)
Q Consensus 12 f~~~~~lE~~LS~DNa~via~i~~~f~lp~~~q~~~ 47 (248)
=+||-++| .||.=+..++-+ |...+.|+
T Consensus 23 KITGMLLE----m~~~ell~lL~~----~~~L~~kV 50 (61)
T d1i2ta_ 23 KITGMLLE----LSPAQLLLLLAS----EDSLRARV 50 (61)
T ss_dssp HHHHHHTT----SCHHHHHHHHHC----HHHHHHHH
T ss_pred chhHHHhc----CCHHHHHHHHCC----HHHHHHHH
Confidence 35666666 899999888776 55665554
Done!