BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025805
(248 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1
Length = 336
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 135/231 (58%), Gaps = 2/231 (0%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L +V++ LI ++KSL+ SGA+ G +V A F LL+FF +SSKLTK
Sbjct: 55 LFSVVVPVLIISNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWK 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
E K+R+D+++KEGGQRNWIQV N + L ++ G + +D + + +
Sbjct: 115 GEMKKRLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+L C GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G+ +G
Sbjct: 175 SLLAALACSAGDTWASEVGPVLSKSPPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVG 234
Query: 188 LTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGF 238
+ + L DI+ Q +I +AGL GS++DS LGAT+Q++G
Sbjct: 235 IAYFLTQLIFVN-DLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGL 284
>sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=2 SV=1
Length = 336
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 135/231 (58%), Gaps = 2/231 (0%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L +V++ LI ++KSL+ SGA+ G +V A F LL+FF +SSKLTK
Sbjct: 55 LFSVVVPVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWK 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
E K+R+D+++KEGGQRNW+QV N + L ++ G + +D + + +
Sbjct: 115 GEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+L C GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G+ +G
Sbjct: 175 SLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVG 234
Query: 188 LTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGF 238
+ + L DI+ Q +I +AGL GS++DS LGAT+Q++G
Sbjct: 235 IAYFLTQLIFVN-DLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGL 284
>sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1
Length = 336
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 137/238 (57%), Gaps = 2/238 (0%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L++VL +I +++SL+ SGA+ G +V A F + LL FFF SSKLTK
Sbjct: 55 LVSVLTPIIIVWHGIKKRSLDNSGALGGLLVGFILTIANYSFFSALLTFFFISSKLTKWK 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
E K+ D+++KEGGQRNW+QV N G+ A L ++ G + +D + + +
Sbjct: 115 GEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+LG GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G+ +G
Sbjct: 175 SLLGALASSAGDTWASEIGPVLSKSSPRLITTWEKVPVGTNGGVTPVGLISSLLGGTSVG 234
Query: 188 LTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKV 245
+ + + +IA Q ++ +AGL GSLIDS LGA +Q+SG+ K+
Sbjct: 235 VAYFVTQLIFVP-DLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQYSGYDESTGKI 291
>sp|Q6P726|TMM19_RAT Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2
Length = 351
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Query: 18 IAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDA 77
I+ +++KSL+ SGA+ G +V A F LL+FF TSSKLTK E K+R+D+
Sbjct: 79 ISCNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLTSSKLTKWRGEMKKRLDS 138
Query: 78 DFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCC 137
++KEGGQRNW+QV N G+ L ++ G + +D + + + +L
Sbjct: 139 EYKEGGQRNWVQVFCNGGVPTELALLYMIENGPGEMPIDFAKQHTASWMCLSLLAALASS 198
Query: 138 NGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFF 196
GDTW+SE+ VLS PRLITT++ V GTNGGVT GL++++ G+ +GL + L
Sbjct: 199 AGDTWASEVAPVLSKSSPRLITTWEKVPVGTNGGVTAVGLVSSLLGGTFVGLAYFLTQLV 258
Query: 197 TATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSG 237
DI+ Q +I +AGL GS++DS LGAT+QFSG
Sbjct: 259 FVN-DLDISAPQWPLIAFGGLAGLLGSIVDSFLGATMQFSG 298
>sp|Q91W52|TMM19_MOUSE Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=2 SV=1
Length = 336
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 132/230 (57%), Gaps = 2/230 (0%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L +V++ +IA +++KSL+ SGA+ G +V A F L+ FF +SSKLTK
Sbjct: 55 LFSVVVPVVIACNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLMTFFLSSSKLTKWR 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
K+++D+++KEGGQRNW+QV N + L ++ G + +D + + +
Sbjct: 115 GNIKKQLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEMPIDFSKQHTASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+L GDTW+SE+ VLS PRLITT++ V GTNGGVT GL +++ G+ +G
Sbjct: 175 SLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKVPVGTNGGVTAVGLASSLLGGTFVG 234
Query: 188 LTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSG 237
L + L DI+ Q +I +AGL GSL+DS LGAT+QFSG
Sbjct: 235 LAYFLTQLVFVN-DLDISAPQWPIIAFGGVAGLFGSLVDSFLGATMQFSG 283
>sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1
Length = 336
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 138/241 (57%), Gaps = 8/241 (3%)
Query: 9 LIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68
L+++L +I +++SL+ SGA+ G +V A F + LL FFF SSKLTK
Sbjct: 55 LVSLLTPIIIVSHGIKKRSLDSSGALGGLLVGFILTIANYSFFSALLAFFFISSKLTKWR 114
Query: 69 EERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIG 128
E K+ D+++KEGGQRNW+QV N G+ A L ++ G + +D + + +
Sbjct: 115 GEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWMCL 174
Query: 129 GILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIG 187
+LG C GDTW+SE+G VLS PRLITT++ V GTNGGVT GL++++ G +G
Sbjct: 175 SLLGALSCSAGDTWASEIGPVLSKSAPRLITTWEKVPVGTNGGVTPIGLISSLLGGISVG 234
Query: 188 LTFVLFGFFTATCTRD---IALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNK 244
+ + F T D IA Q ++ +AGL GSLIDS LGA +Q+SG+ K
Sbjct: 235 VAY----FVTQLVFVDDLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQYSGYDESTGK 290
Query: 245 V 245
+
Sbjct: 291 I 291
>sp|Q58343|Y933_METJA Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0933 PE=3 SV=1
Length = 238
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 120/248 (48%), Gaps = 52/248 (20%)
Query: 1 METFLNQTLIAVLISSLIAIRSYRRKSLNFSG----AVSGFIVMTAHIAAGSRFGALLLV 56
MET + + +++LI ++A+ + + L+ G ++ GFI++ G ++ LLL
Sbjct: 6 METLI-RLFVSILIICVLALMIKKSRCLDNEGVIGSSIMGFILLYF---CGFKYLILLLS 61
Query: 57 FFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIV------WKLTGQ 110
FF +++VG E+K+ D R+ VL+N G+ +L I+ W L G
Sbjct: 62 FFILGVLVSRVGLEKKKAKKMDET---CRSLKNVLAN-GLIPILFAILAIFGFNWALIGY 117
Query: 111 QDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGG 170
+ DT+SSELG+LS+E+PRLITTF+ V +GT+G
Sbjct: 118 --------------------ISSIAAATSDTFSSELGILSNEKPRLITTFEVVEKGTDGA 157
Query: 171 VTKAGLLAAVAAGSVIGL-TFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLL 229
+T G LA V +IGL ++LFG DI ++ G+ G+L DSL+
Sbjct: 158 ITIFGTLAGVLGAFLIGLFGYLLFG--------DIK-----IVLCGTAGGIAGNLADSLV 204
Query: 230 GATLQFSG 237
GA + G
Sbjct: 205 GALFERKG 212
>sp|P73555|Y875_SYNY3 Uncharacterized membrane protein sll0875 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1
Length = 258
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 45 AAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIV 104
A G R ++L +FF S +T++G++ K K GQR V ++ AA+ +
Sbjct: 58 ALGWRGYLVVLAYFFVGSAVTRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCAL-- 115
Query: 105 WKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVR 164
+ L +L G + + DT +SE+G + LITT +PV
Sbjct: 116 -------AIAFGPEPWQLWLAL--GYVASFSTKLSDTTASEVGKAYGKNTFLITTLQPVP 166
Query: 165 RGTNGGVTKAG 175
RGT G V+ G
Sbjct: 167 RGTEGAVSVEG 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,327,521
Number of Sequences: 539616
Number of extensions: 3381902
Number of successful extensions: 10852
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10822
Number of HSP's gapped (non-prelim): 14
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)