Query 025805
Match_columns 248
No_of_seqs 103 out of 426
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:45:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4491 Predicted membrane pro 100.0 8.4E-72 1.8E-76 491.9 14.5 243 4-246 38-282 (323)
2 TIGR00297 conserved hypothetic 100.0 6.4E-69 1.4E-73 477.4 21.8 218 6-247 2-220 (237)
3 PF01940 DUF92: Integral membr 100.0 1.9E-68 4.1E-73 472.5 20.2 214 11-247 1-216 (226)
4 COG1836 Predicted membrane pro 100.0 7.8E-62 1.7E-66 428.7 20.3 222 2-247 7-229 (247)
5 PF01148 CTP_transf_1: Cytidyl 94.7 0.23 4.9E-06 43.4 9.0 87 130-229 133-219 (259)
6 COG0170 SEC59 Dolichol kinase 71.3 9.5 0.00021 33.8 5.5 51 129-189 116-166 (216)
7 PRK14395 membrane protein; Pro 65.4 39 0.00084 29.7 8.0 74 10-83 119-192 (195)
8 COG1585 Membrane protein impli 59.1 37 0.00079 28.2 6.4 36 34-70 32-67 (140)
9 COG0575 CdsA CDP-diglyceride s 56.0 1.6E+02 0.0034 26.6 17.8 93 132-236 139-231 (265)
10 PRK04032 hypothetical protein; 55.9 58 0.0013 27.9 7.2 64 167-234 33-96 (159)
11 PRK14402 membrane protein; Pro 54.8 54 0.0012 28.9 7.1 71 11-81 122-192 (198)
12 PLN02953 phosphatidate cytidyl 54.5 66 0.0014 31.5 8.1 88 132-233 274-361 (403)
13 COG4854 Predicted membrane pro 54.0 19 0.00042 29.3 3.7 70 30-100 9-85 (126)
14 PRK14405 membrane protein; Pro 52.6 64 0.0014 28.4 7.2 61 23-83 136-196 (202)
15 PF01102 Glycophorin_A: Glycop 52.5 14 0.0003 30.3 2.7 26 31-59 63-88 (122)
16 TIGR00023 acyl-phosphate glyce 50.2 96 0.0021 27.2 7.9 62 21-83 133-194 (196)
17 PRK14416 membrane protein; Pro 49.4 73 0.0016 28.2 7.0 62 20-81 125-190 (200)
18 PF04973 NMN_transporter: Nico 47.0 1.8E+02 0.0038 24.6 11.2 92 6-97 3-96 (181)
19 PRK00220 putative glycerol-3-p 46.6 94 0.002 27.3 7.3 62 21-82 133-194 (198)
20 PF10031 DUF2273: Small integr 44.9 48 0.001 22.9 4.2 40 29-68 10-49 (51)
21 COG3167 PilO Tfp pilus assembl 43.8 15 0.00032 32.6 1.8 29 141-173 152-184 (211)
22 PRK11624 cdsA CDP-diglyceride 43.2 1.6E+02 0.0035 27.1 8.6 85 133-231 158-243 (285)
23 PRK14393 membrane protein; Pro 42.1 1.2E+02 0.0027 26.5 7.3 68 11-79 121-189 (194)
24 PRK14397 membrane protein; Pro 41.2 1.2E+02 0.0025 27.4 7.1 57 18-75 128-184 (222)
25 PRK10484 putative transporter; 39.5 1.9E+02 0.004 28.6 9.0 23 21-43 423-445 (523)
26 PRK14419 membrane protein; Pro 38.9 1.5E+02 0.0032 26.1 7.3 58 24-81 135-192 (199)
27 PRK14407 membrane protein; Pro 38.8 1.3E+02 0.0028 26.9 7.0 70 10-79 143-212 (219)
28 PRK14414 membrane protein; Pro 38.5 1.1E+02 0.0024 27.3 6.5 65 11-75 125-192 (210)
29 PF05545 FixQ: Cbb3-type cytoc 38.2 25 0.00054 23.7 1.8 29 50-78 13-41 (49)
30 PRK14392 membrane protein; Pro 37.9 1.4E+02 0.0031 26.4 7.1 67 12-79 123-189 (207)
31 PRK14412 membrane protein; Pro 36.5 1.5E+02 0.0033 26.0 7.0 71 10-81 119-190 (198)
32 PRK14406 membrane protein; Pro 35.7 1.5E+02 0.0033 26.1 6.9 62 20-83 126-187 (199)
33 PF10031 DUF2273: Small integr 35.3 1.5E+02 0.0033 20.5 5.8 42 175-226 9-50 (51)
34 PRK14400 membrane protein; Pro 33.0 1.7E+02 0.0037 25.8 6.7 64 16-79 134-198 (201)
35 PF11755 DUF3311: Protein of u 32.8 48 0.001 24.0 2.8 40 46-85 26-66 (66)
36 PRK09395 actP acetate permease 32.8 1.1E+02 0.0023 30.6 6.2 23 21-43 451-473 (551)
37 PRK14396 membrane protein; Pro 32.7 2E+02 0.0042 25.2 7.0 61 18-79 126-186 (190)
38 PF01925 TauE: Sulfite exporte 32.6 3.2E+02 0.0068 23.3 8.4 13 19-31 51-64 (240)
39 PF04093 MreD: rod shape-deter 31.6 1.7E+02 0.0037 23.5 6.3 51 19-71 42-93 (160)
40 PF11014 DUF2852: Protein of u 31.4 87 0.0019 25.5 4.2 39 31-72 9-47 (115)
41 TIGR01528 NMN_trans_PnuC nicot 31.2 3.4E+02 0.0074 23.3 9.4 54 11-64 8-62 (189)
42 COG4589 Predicted CDP-diglycer 30.7 1.9E+02 0.0042 26.9 6.8 61 161-228 200-260 (303)
43 PRK14403 membrane protein; Pro 30.3 2.1E+02 0.0045 25.2 6.8 69 11-81 121-190 (196)
44 PRK14398 membrane protein; Pro 29.8 2.1E+02 0.0046 25.0 6.8 66 11-78 121-186 (191)
45 KOG2468 Dolichol kinase [Lipid 29.3 1.1E+02 0.0024 30.6 5.3 48 130-188 413-460 (510)
46 COG5336 Uncharacterized protei 28.0 1.5E+02 0.0033 24.0 5.0 32 31-64 54-87 (116)
47 PRK06814 acylglycerophosphoeth 27.9 7.7E+02 0.017 26.4 13.7 33 214-246 340-372 (1140)
48 PF09946 DUF2178: Predicted me 27.8 1.2E+02 0.0026 24.2 4.4 11 82-93 64-74 (111)
49 PF02667 SCFA_trans: Short cha 27.2 1.7E+02 0.0036 29.2 6.2 48 3-50 108-156 (453)
50 PRK14411 membrane protein; Pro 27.0 2.6E+02 0.0057 24.8 6.9 59 19-79 129-187 (204)
51 TIGR02736 cbb3_Q_epsi cytochro 26.6 84 0.0018 22.4 2.9 23 50-72 6-28 (56)
52 TIGR00366 conserved hypothetic 26.4 2.4E+02 0.0051 28.0 7.1 49 3-51 105-154 (438)
53 KOG2962 Prohibitin-related mem 26.3 29 0.00064 31.8 0.8 14 160-173 71-84 (322)
54 PRK13718 conjugal transfer pro 25.2 93 0.002 23.8 3.2 44 27-77 37-80 (84)
55 PLN00411 nodulin MtN21 family 25.1 1.2E+02 0.0026 28.8 4.7 12 83-94 343-354 (358)
56 PRK14413 membrane protein; Pro 24.4 3.4E+02 0.0074 23.8 7.1 58 18-75 135-192 (197)
57 PRK14394 membrane protein; Pro 24.2 3E+02 0.0064 24.2 6.7 70 8-79 118-188 (195)
58 PRK12488 acetate permease; Pro 24.0 2.1E+02 0.0046 28.6 6.4 23 21-43 449-471 (549)
59 PF08570 DUF1761: Protein of u 23.7 3.7E+02 0.008 21.2 8.7 56 36-103 3-64 (126)
60 PRK09459 pspG phage shock prot 22.5 2.6E+02 0.0056 21.1 5.1 20 170-189 18-37 (76)
61 PRK14415 membrane protein; Pro 22.5 3.7E+02 0.008 23.9 7.0 70 11-81 136-210 (216)
62 PF06738 DUF1212: Protein of u 22.1 1.6E+02 0.0034 24.8 4.5 32 72-103 88-120 (193)
63 PF10101 DUF2339: Predicted me 22.1 8.5E+02 0.018 24.8 10.7 94 19-147 22-117 (745)
64 PRK13859 type IV secretion sys 21.9 77 0.0017 22.4 2.0 33 130-165 9-41 (55)
65 KOG4453 Predicted ER membrane 21.6 3.4E+02 0.0074 24.9 6.6 78 139-228 168-246 (269)
66 PRK15419 proline:sodium sympor 21.3 4E+02 0.0086 26.2 7.7 23 21-43 418-440 (502)
67 TIGR02711 symport_actP cation/ 21.1 3E+02 0.0064 27.6 6.8 23 21-43 449-471 (549)
68 COG0355 AtpC F0F1-type ATP syn 21.1 40 0.00087 27.9 0.6 22 140-162 26-47 (135)
69 PRK14418 membrane protein; Pro 20.9 5.9E+02 0.013 23.1 8.1 35 10-44 134-168 (236)
70 TIGR02230 ATPase_gene1 F0F1-AT 20.3 1.8E+02 0.0039 23.0 4.1 14 81-94 32-45 (100)
71 PF13829 DUF4191: Domain of un 20.2 1.9E+02 0.0041 26.1 4.7 33 208-242 52-84 (224)
No 1
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.4e-72 Score=491.94 Aligned_cols=243 Identities=45% Similarity=0.703 Sum_probs=236.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccC-
Q 025805 4 FLNQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEG- 82 (248)
Q Consensus 4 ~~~~~~~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~- 82 (248)
.|+||+++++++.+++..++||||||.||++++++||+++..++-+||..|++||++||++||+|++.|+++|.+++|+
T Consensus 38 pp~RwlFsvvvp~li~~~~lkrkSld~SGa~~G~lV~filtIa~h~ff~sl~~fF~sss~~tkfr~~~k~r~~s~~~eg~ 117 (323)
T KOG4491|consen 38 PPWRWLFSVVVPVLIVSNGLKRKSLDHSGALGGLLVGFILTIANHSFFTSLLMFFLSSSKLTKFRGEVKKRLDSEYKEGL 117 (323)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHhcchhHHHHHHHHHccchhhhHHHHHHHHHHHHHhhcc
Confidence 5799999999999999999999999999999999999998888888999999999999999999999999999988887
Q ss_pred CCCChhHHhhcchHHHHHHHHHHHHhCCCCcccCcCchhHHHHHHHHHHHHHHhhhchhhhhhhh-ccCCCCceeeeCCc
Q 025805 83 GQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFK 161 (248)
Q Consensus 83 g~R~~~QVlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~~~~g~~A~~~aDTwASEiG-~ls~~~PrlItt~k 161 (248)
|||||.||+|||++|..++++|...+|+.+.+.|+.+++..+|++++.++|+|||++|||+||+| +||+++||+|||||
T Consensus 118 GQRNWvQVlCNggva~~Lally~~~~G~ge~~vDf~~~y~~swl~~~~~~a~ACcnGDTWsSElG~VLS~~~PrlItTw~ 197 (323)
T KOG4491|consen 118 GQRNWVQVLCNGGVATELALLYMIENGPGEIPVDFSKQYSASWLCLSLLAALACCNGDTWSSELGPVLSKSSPRLITTWE 197 (323)
T ss_pred CccchhhhhcCCcchHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHhcCCChhhhhhcchhccCCCceEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhceEEecC
Q 025805 162 PVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSV 241 (248)
Q Consensus 162 ~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~DSlLGAtlQ~~~~~~~ 241 (248)
|||+|||||||.+|.+++++|+.++|+.|++.++++.+|..+++.+||+.++++.++|++||++||+||||+|.+++|+.
T Consensus 198 ~Vp~GTNGGVt~~Gl~~sLlgGt~VG~~yf~t~l~tv~c~ldis~pQwpiIafgglAGL~GSlvDS~LGat~QfsG~~e~ 277 (323)
T KOG4491|consen 198 KVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQLITVNCDLDISAPQWPIIAFGGLAGLLGSLVDSYLGATMQFSGFNEV 277 (323)
T ss_pred ecccCCCCCEeeHHHHHHHhccceeehHhhhhhhheeecccccCcccCcEeehhhHHHHHHHHHHHHhhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeee
Q 025805 242 RNKVN 246 (248)
Q Consensus 242 ~~~v~ 246 (248)
++|||
T Consensus 278 ~gkvV 282 (323)
T KOG4491|consen 278 RGKVV 282 (323)
T ss_pred cCeee
Confidence 99987
No 2
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=100.00 E-value=6.4e-69 Score=477.42 Aligned_cols=218 Identities=30% Similarity=0.350 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHH-hhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCCC
Q 025805 6 NQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHI-AAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQ 84 (248)
Q Consensus 6 ~~~~~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~-~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g~ 84 (248)
++|.+++++++++++++||||+||+||+++|+++|++++ ..|++|+.+++.||++||++||||+++|+++|..|+|+|+
T Consensus 2 ~~~~~a~~~~~~l~~~~~~~~~L~~sG~~~a~~vG~~~~~~~g~~~~~~ll~Ff~~sS~~Tk~~~~~K~~~~~~e~~gg~ 81 (237)
T TIGR00297 2 FLWLSAVILCVFLLALAAYAPLLDPWGYGHAWIMGVIIILFAGFRGLLVILAFFFLGSAVTRYGQEEKKAAGIAEKRSGQ 81 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHhccHHHHHhcccccccCCC
Confidence 579999999999999999999999999999999999885 6899999999999999999999999999999999999999
Q ss_pred CChhHHhhcchHHHHHHHHHHHHhCCCCcccCcCchhHHHHHHHHHHHHHHhhhchhhhhhhhccCCCCceeeeCCcccC
Q 025805 85 RNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVR 164 (248)
Q Consensus 85 R~~~QVlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~~~~g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp 164 (248)
||++||+||++++++++++|.+.+. .++ ++..+|++++|||+|||||||||++|+++||+||||||||
T Consensus 82 R~~~qVlaNg~~~~~~al~~~~~~~---------~~~---~~~~~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~ 149 (237)
T TIGR00297 82 RGPKNVWGNGLTPALFALAIAFGPE---------WDL---WLALGYVASVATALSDTMASEIGKAYGKNPRLITTLQRVE 149 (237)
T ss_pred CCHHHHHHhhHHHHHHHHHHHhccc---------chH---HHHHHHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCC
Confidence 9999999999999999998765221 112 2346899999999999999999999999999999999999
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhceEEecCCCe
Q 025805 165 RGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNK 244 (248)
Q Consensus 165 ~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~~~ 244 (248)
||||||||++||+|+++|+++|+..+++.+.. ++..+.+++++|++||++||+||||+|+|++.+ |+.
T Consensus 150 ~GT~GgVS~~Gt~As~~Ga~~I~~~~~~~~~~-----------~~~~~~~~~~aG~~Gsl~DSlLGAtlQ~~g~l~-N~~ 217 (237)
T TIGR00297 150 PGTDGAISVEGTLAGFAGALAIALLGYLLGLI-----------SFKGILFSTLAAFAGTNLDSLLGATLERKGYLT-NEH 217 (237)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhc-----------chHHHHHHHHHHHHHHHHHHHHhHHHhhccccc-cHH
Confidence 99999999999999999999999876554421 122345677999999999999999999999776 888
Q ss_pred eee
Q 025805 245 VNV 247 (248)
Q Consensus 245 v~~ 247 (248)
||.
T Consensus 218 VN~ 220 (237)
T TIGR00297 218 VNL 220 (237)
T ss_pred HHH
Confidence 875
No 3
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.9e-68 Score=472.51 Aligned_cols=214 Identities=45% Similarity=0.688 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHH-HhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCCCCChhH
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAH-IAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQ 89 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~-~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g~R~~~Q 89 (248)
+++++.++++++||||+||+||+++|+++|+++ ...||+|+++|+.||++||++||+|+++|+++|++|+|+|+|||+|
T Consensus 1 Al~~~~~l~~~a~~~k~Lt~sGa~aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~Q 80 (226)
T PF01940_consen 1 ALLLSLLLAILAYKKKSLTLSGALAAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQ 80 (226)
T ss_pred CcHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHH
Confidence 467889999999999999999999999999965 5689999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHHhCCCCcccCcCchhHHHHHHHHHHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCc
Q 025805 90 VLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNG 169 (248)
Q Consensus 90 VlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~~~~g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnG 169 (248)
|+||+++|++++++|++.+.. .++. +..++++++|||+|||||||||++||++||+|||||||||||||
T Consensus 81 VlaNg~~a~~~al~~~~~~~~--------~~~~---~~~~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~G 149 (226)
T PF01940_consen 81 VLANGGVAALCALLYAFFPST--------PAPL---LLLAFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSG 149 (226)
T ss_pred hhhccHHHHHHHHHHHHhccc--------chHH---HHHHHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCC
Confidence 999999999999998875411 1122 34589999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhc-eEEecCCCeeee
Q 025805 170 GVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQF-SGFCSVRNKVNV 247 (248)
Q Consensus 170 gVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~DSlLGAtlQ~-~~~~~~~~~v~~ 247 (248)
|||++||+|+++|+++|++++++.... +.+ .+.+++++|++||++||+||||+|+ +.+.+ |+.||.
T Consensus 150 gVS~lGt~as~~Ga~~Ia~~~~~~~~~--------~~~---~~~~~~~~G~~Gsl~DSlLGAtlQ~G~~~l~-N~~VN~ 216 (226)
T PF01940_consen 150 GVSLLGTLASLAGALLIALVAFLLGLI--------SFP---LVLLIALAGFLGSLLDSLLGATLQRGRGWLN-NDAVNF 216 (226)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHcc--------chH---HHHHHHHHHHHHHHHHHHhhHHHhCCCCCcC-hhHHHH
Confidence 999999999999999999987665421 111 2334579999999999999999999 77775 888875
No 4
>COG1836 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.8e-62 Score=428.70 Aligned_cols=222 Identities=34% Similarity=0.471 Sum_probs=200.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHH-hhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccc
Q 025805 2 ETFLNQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHI-AAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFK 80 (248)
Q Consensus 2 ~~~~~~~~~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~-~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~ 80 (248)
+.++++++.++++..++++.+||+|.||++|.++|+++|.++. .+|+.|+++|+.||++||.+||+|+++|++++.+|+
T Consensus 7 ~~~~~~~l~all~~~~L~~la~~~k~Ld~~G~~~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE~ 86 (247)
T COG1836 7 QMAIDPLLLALLLILFLGALAYKAKALDLSGSLSAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAEG 86 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 4568899999999999999999999999999999999999874 689999999999999999999999999999999999
Q ss_pred cCCCCChhHHhhcchHHHHHHHHHHHHhCCCCcccCcCchhHHHHHHHHHHHHHHhhhchhhhhhhhccCCCCceeeeCC
Q 025805 81 EGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELGVLSDEQPRLITTF 160 (248)
Q Consensus 81 ~~g~R~~~QVlaNg~va~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~~~~g~~A~~~aDTwASEiG~ls~~~PrlItt~ 160 (248)
++|+|+.+||+.|+..|.+|+++|.+++. ++ .+...+|++++|+++|||||||||+.++++||+||||
T Consensus 87 ~~g~R~~~NV~gn~l~~~l~av~~~~~~~----------~~--~~~~~~~~~SvAta~aDT~ASEiG~~~~~~p~lITtf 154 (247)
T COG1836 87 RDGARSLENVLGNGLAALLFAVLYAIYPD----------PQ--LWFLGGFAASVATANADTLASEIGKAYGKRPRLITTF 154 (247)
T ss_pred ccccccHHHHhhccHHHHHHHHHHHhCCC----------ch--HHHHHHHHHHHHHHhhhHHHHHHhHhhCCCeEEEEee
Confidence 99999999999999999999999865432 11 2234689999999999999999999999999999999
Q ss_pred cccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhceEEec
Q 025805 161 KPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCS 240 (248)
Q Consensus 161 k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~DSlLGAtlQ~~~~~~ 240 (248)
||||||||||||+.||+|+++|+++|++.++++++.. ...+..++++||+|+++||++|||+|+|||.+
T Consensus 155 krV~~Gt~GaVS~~GelAav~Ga~iIal~~~l~~~~~-----------~~~v~~vtlaGf~G~~iDSllGAtle~kg~Lt 223 (247)
T COG1836 155 KRVEPGTSGAVSLVGELAAVAGAFIIALLSYLVGYIS-----------LGGVLSVTLAGFAGTNIDSLLGATLERKGYLT 223 (247)
T ss_pred eEcCCCCCCccchhhhHHHHHHHHHHHHHHHHHHhcc-----------cchhHHHHHHHHHhhhHHHHhhHHHHhheeec
Confidence 9999999999999999999999999999877666531 12344678999999999999999999999997
Q ss_pred CCCeeee
Q 025805 241 VRNKVNV 247 (248)
Q Consensus 241 ~~~~v~~ 247 (248)
|+.||.
T Consensus 224 -N~~VNf 229 (247)
T COG1836 224 -NEGVNF 229 (247)
T ss_pred -ccchhH
Confidence 888885
No 5
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=94.69 E-value=0.23 Score=43.43 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhH
Q 025805 130 ILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQL 209 (248)
Q Consensus 130 ~~g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~ 209 (248)
..+-...+.+|++|+=+|+..++++ .|-.|..=|++|++++++++++++....... ... . .......
T Consensus 133 ~~~i~~~~~gD~~A~l~G~~fGk~~---------~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~--~~~-~-~~~~~~~ 199 (259)
T PF01148_consen 133 LIGILILGIGDSFAYLVGRRFGKHL---------APKISPKKTWEGSIAGFISSFIISFLLLYYL--SSF-F-LSWWQAI 199 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---------CCCCCCCCCHHHHhHHHHHHHHHHHHHHHHh--cch-h-hHHHHHH
Confidence 3456778899999999999988652 2223444499999999999999976432111 100 0 0011112
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025805 210 LVIPISAIAGLCGSLIDSLL 229 (248)
Q Consensus 210 ~~~~i~~~~G~~Gsl~DSlL 229 (248)
....+..+.+.+|.+++|.+
T Consensus 200 ~~~~~~~i~~~~gdl~~S~~ 219 (259)
T PF01148_consen 200 LISLLASIVEAFGDLFESAI 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22234456677777777876
No 6
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=71.28 E-value=9.5 Score=33.78 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=39.3
Q ss_pred HHHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHH
Q 025805 129 GILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLT 189 (248)
Q Consensus 129 ~~~g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~ 189 (248)
+.++=+..+.+|+.||=+|+.++++++-.-+ +=|+.|++|.+..++++...
T Consensus 116 ~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~----------~KSleGSla~fi~~~l~~~~ 166 (216)
T COG0170 116 AIAGILVLALGDGLASIIGKRYGRHKRILGN----------GKSLEGSLAFFIASFLVLLV 166 (216)
T ss_pred HHHHHHHHHHhhHHHHHhCcccCccccccCC----------CCchhhhHHHHHHHHHHHHH
Confidence 3456778889999999999999876433333 34788999999999888753
No 7
>PRK14395 membrane protein; Provisional
Probab=65.39 E-value=39 Score=29.68 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCC
Q 025805 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGG 83 (248)
Q Consensus 10 ~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g 83 (248)
..++............|..|.+...+++.+-...+..+......+....+.--..-|+|++.||-++-+|+|=+
T Consensus 119 ~~l~~~~v~~~~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~rH~~NI~Rl~~g~E~k~~ 192 (195)
T PRK14395 119 ITVMAIVLFVLVVFLTRYVSVGSVLAALTVGILVFLFNEPMAYKVFAVIAVSGVVIRHRTNIQRVLKGTENKFN 192 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 33333334444555678889988887776665544332211112222223344667888888877665555544
No 8
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=59.07 E-value=37 Score=28.22 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchh
Q 025805 34 VSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEE 70 (248)
Q Consensus 34 laa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~ 70 (248)
++|+.+| +....+++|..-++.|-+.|-.+.-+.++
T Consensus 32 ~aA~~vg-~~~l~~~~~~~q~v~f~~lsv~~~~l~rr 67 (140)
T COG1585 32 LAALAVG-LALLLLLSWWLQLVLFAILSVLLALLGRR 67 (140)
T ss_pred HHHHHHH-HHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888 44455666666666666666554444333
No 9
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=56.01 E-value=1.6e+02 Score=26.64 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=61.8
Q ss_pred HHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHH
Q 025805 132 GHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLV 211 (248)
Q Consensus 132 g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~ 211 (248)
-....-.+|+.|+=.|+.-+++| -.|-.|-.-|++|.+.+++++.+++.......-.. ... .......
T Consensus 139 l~~~vw~~Di~Ayf~Gr~fGk~k--------l~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~---~~~-~~~~~~l 206 (265)
T COG0575 139 LFLGVWAGDIGAYFVGRRFGKHK--------LAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSL---ILN-IWTLLIL 206 (265)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCC--------CCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhh---hHH-HHHHHHH
Confidence 35667789999999999988777 33445666799999999999998886432111000 000 0011123
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhce
Q 025805 212 IPISAIAGLCGSLIDSLLGATLQFS 236 (248)
Q Consensus 212 ~~i~~~~G~~Gsl~DSlLGAtlQ~~ 236 (248)
..+..+.+.+|-++.|.+--.++-|
T Consensus 207 ~~~~~l~~~lGDL~eS~iKR~~gvK 231 (265)
T COG0575 207 GLLLVLTSQLGDLFESYIKRLLGIK 231 (265)
T ss_pred HHHHHHHHHHhhHHHHHHHHccCCC
Confidence 3445678899999999988776655
No 10
>PRK04032 hypothetical protein; Provisional
Probab=55.90 E-value=58 Score=27.85 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=37.2
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025805 167 TNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQ 234 (248)
Q Consensus 167 TnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~DSlLGAtlQ 234 (248)
.|=.-|++|...+++++.+.+.++. .+........ ......-.+..+.|.+|.+..|.+=.-.|
T Consensus 33 iSP~KTwEG~iGGv~~~~l~~~~~~---~~~~~~~~~~-~~~~~~g~li~v~~~~GDL~eS~iKR~~g 96 (159)
T PRK04032 33 LGDGKTWRGLIGGILFGTLVGLIQN---LLVPAYIGAL-GVAIILAFLLSFGALLGDMLGSFIKRRLG 96 (159)
T ss_pred CCCCCcHHHhHHHHHHHHHHHHHHH---HHHccchhHH-HHHHHHHHHHHHHHHHhhHHHHHHhhccC
Confidence 5556799999999999988876432 1111100000 01111123345888999999998744433
No 11
>PRK14402 membrane protein; Provisional
Probab=54.78 E-value=54 Score=28.89 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccccc
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~ 81 (248)
.++............|..|.+..+++..+-...+..+.+....+....+..-..-|+|++.||-+.-+|+|
T Consensus 122 ~l~~~~v~~i~~~itr~vSl~Si~a~~~~~~~~~~~~~~~~~~~~~~~la~lii~rHr~NI~Rl~~g~E~k 192 (198)
T PRK14402 122 ALLTFPVGVACMWLTRFVSAGSMIGAVTAGVLALALGRPLWEVATVVLLAALLFWTHRENIRRLQAGTERR 192 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 33333333344555677888877776655554333221111122223344456678888888766655544
No 12
>PLN02953 phosphatidate cytidylyltransferase
Probab=54.47 E-value=66 Score=31.47 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHH
Q 025805 132 GHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLV 211 (248)
Q Consensus 132 g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~ 211 (248)
.-...-.+||.|=-.|...+++|. . ++.|+ -|+.|.+.|++++.+++..+... ... +... +....+
T Consensus 274 ~~~~vw~~Di~AY~~G~~fGk~kl--~---~ISPk----KTwEG~iGGil~~vlv~~l~~~~---l~~-~~~~-~~~i~l 339 (403)
T PLN02953 274 SFSGVIATDTFAFLGGKAFGRTPL--T---SISPK----KTWEGTFVGLVGCIAITILLSKS---LSW-PQSL-FSSIAF 339 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC--C---cCCCC----CeeeeehhHHHHHHHHHHHHHHH---Hcc-chHH-HHHHHH
Confidence 345566789999999988876653 1 45554 58999999999999988653211 110 1110 011112
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 025805 212 IPISAIAGLCGSLIDSLLGATL 233 (248)
Q Consensus 212 ~~i~~~~G~~Gsl~DSlLGAtl 233 (248)
-.+..+.|++|.++.|.+=.-.
T Consensus 340 g~li~~~~~~GDL~eS~iKR~~ 361 (403)
T PLN02953 340 GFLNFFGSVFGDLTESMIKRDA 361 (403)
T ss_pred HHHHHHHHHhhHHHHHHHhHcc
Confidence 2334578889999988874433
No 13
>COG4854 Predicted membrane protein [Function unknown]
Probab=53.96 E-value=19 Score=29.34 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHH-Hh-hChhHHHHHHHHHHhhhhhhhcchhhhhhccccc-----ccCCCCChhHHhhcchHHHHH
Q 025805 30 FSGAVSGFIVMTAH-IA-AGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF-----KEGGQRNWIQVLSNSGIAAVL 100 (248)
Q Consensus 30 ~sGalaa~~vG~l~-~~-~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~-----~~~g~R~~~QVlaNg~va~~~ 100 (248)
..+.+...++|.++ +. -...|++.+.+||.---.++-+|++..+-.|++- ++..+|+ .||++-|..-.-.
T Consensus 9 ~~l~~ivm~~GA~~g~a~~sGn~~iav~af~ag~~~l~l~k~Rv~~vvEDER~lrvse~aSr~T-iqV~~is~Al~ga 85 (126)
T COG4854 9 KILFAIVMAVGAAVGYAVESGNWFIAVIAFFAGAALLSLVKRRVDEVVEDERTLRVSERASRRT-IQVFSISAALGGA 85 (126)
T ss_pred HHHHHHHHHHHHHHheeecCCCeehHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhee-EEEEEehHHHHHH
Confidence 44555666677655 33 2334789999999877777777776665554431 3344455 5999877543333
No 14
>PRK14405 membrane protein; Provisional
Probab=52.56 E-value=64 Score=28.42 Aligned_cols=61 Identities=5% Similarity=-0.062 Sum_probs=32.5
Q ss_pred HHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCC
Q 025805 23 YRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGG 83 (248)
Q Consensus 23 ~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g 83 (248)
...|..|.+...++...-...+..+......+....+..-..-|+|++.|+-++-+|+|=+
T Consensus 136 ~itr~vSl~si~~~~~~~~~~~~~~~~~~~~~~~~~l~~lvi~rHr~NI~rl~~g~E~k~~ 196 (202)
T PRK14405 136 VITRYVSLGSLLFVTLTPVLLYIFDYPIPYIWLSLIIAIFAFWRHRTNIVRLLSGTENKLG 196 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 4467777777776665544433332211112222334444567888888877665554433
No 15
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.46 E-value=14 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHhhChhHHHHHHHHHH
Q 025805 31 SGAVSGFIVMTAHIAAGSRFGALLLVFFF 59 (248)
Q Consensus 31 sGalaa~~vG~l~~~~g~~~~~~Ll~FF~ 59 (248)
.|+++++++|++ +|.-+.++|+.|++
T Consensus 63 ~~~i~~Ii~gv~---aGvIg~Illi~y~i 88 (122)
T PF01102_consen 63 EPAIIGIIFGVM---AGVIGIILLISYCI 88 (122)
T ss_dssp -TCHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred ccceeehhHHHH---HHHHHHHHHHHHHH
Confidence 456777777765 33333456666666
No 16
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=50.20 E-value=96 Score=27.20 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=32.8
Q ss_pred HHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCC
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGG 83 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g 83 (248)
.....|..|.+..+++..+-...+..+... ..+....+.--.+-|+|++.||-++.+|+|=+
T Consensus 133 ~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~-~~~~~~~~~~lii~rHr~NI~Rl~~g~E~k~~ 194 (196)
T TIGR00023 133 VTLVTKYVSLSSIVTAIVLPFYVLWFHLPY-LYIPVTLLLIFVIYRHRANIQRLLNGTEPKVW 194 (196)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence 344556778777776665554433332221 11222233344567778777776665554433
No 17
>PRK14416 membrane protein; Provisional
Probab=49.39 E-value=73 Score=28.21 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=35.3
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHHHhhChhHHH----HHHHHHHhhhhhhhcchhhhhhccccccc
Q 025805 20 IRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGA----LLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (248)
Q Consensus 20 ~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~----~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~ 81 (248)
......|..|.+..++++..-+..+..+-.... .++..++.--..-|.|++.++-++..|+|
T Consensus 125 i~~~itr~vSL~Si~a~~~~p~~~~~~~~~~~~~~~~~~l~~~i~~~v~~~h~~nI~r~~~~~e~k 190 (200)
T PRK14416 125 IPLALTRNIALATGIALFSLPFLVWYGSHSEFATLISVLLFLMIGIKFVLDNRKSLRDPANRRNLI 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhhHhhHHHHHcCCccc
Confidence 344557788888888877766655443322222 33344444445557777777666555544
No 18
>PF04973 NMN_transporter: Nicotinamide mononucleotide transporter; InterPro: IPR006419 The PnuC protein of Escherichia coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see IPR006417 from INTERPRO). The extreme N- and C-terminal regions are poorly conserved. ; GO: 0006810 transport, 0016020 membrane
Probab=47.01 E-value=1.8e+02 Score=24.60 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhh--cchhhhhhcccccccCC
Q 025805 6 NQTLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTK--VGEERKRRVDADFKEGG 83 (248)
Q Consensus 6 ~~~~~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk--~k~~~K~~~~~~~~~~g 83 (248)
..++.++.-.+.+...+.+|+.-=+-|.++.++-+.+-+-.+...-..+=.||+..+...= ++++++++.+..-++-.
T Consensus 3 ~~~~~~i~g~l~v~l~~k~~~~~~~~giis~~~y~~i~~~~~ly~~~~lq~~~~~~~i~G~~~W~~~~~~~~~~~v~~~~ 82 (181)
T PF04973_consen 3 LELIASILGLLCVILAAKGNIWNWPFGIISSLLYAYIFYQAGLYGDMLLQLFYFIMSIYGWYQWKKGRDENDEVKVRRLS 82 (181)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccCcccceeeCC
Confidence 3344333333333444444445456677777766666566666666667677777665433 33222233333334445
Q ss_pred CCChhHHhhcchHH
Q 025805 84 QRNWIQVLSNSGIA 97 (248)
Q Consensus 84 ~R~~~QVlaNg~va 97 (248)
+|++.+++.-..+.
T Consensus 83 ~~~~~~~~~~~~i~ 96 (181)
T PF04973_consen 83 KKQWILLLIGILIG 96 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666444333
No 19
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=46.60 E-value=94 Score=27.26 Aligned_cols=62 Identities=6% Similarity=-0.024 Sum_probs=30.5
Q ss_pred HHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccC
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEG 82 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~ 82 (248)
.....|..+.+..+++...-...+..+......+....+..-.+-|+|++.||-++.+|+|=
T Consensus 133 ~~~~tr~vsl~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~rH~~Ni~rl~~g~E~k~ 194 (198)
T PRK00220 133 VALLTRYSSLAALVAALIAPIYVWWFPPDWQFTIPVALLSVLIIYRHRDNIQRLLAGTESKI 194 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34445667777666655544433333221011122222333456677777777665555443
No 20
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=44.85 E-value=48 Score=22.95 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred ChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcc
Q 025805 29 NFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVG 68 (248)
Q Consensus 29 t~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k 68 (248)
..-|++.++++|.+....|..-.+.++++-..+-..-|+.
T Consensus 10 ~iiG~~~G~ila~l~l~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 10 KIIGGLIGLILALLILTFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888888877778766666777777776665543
No 21
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.78 E-value=15 Score=32.58 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=20.9
Q ss_pred hhhhhhhccCCCCceeee----CCcccCCCCCcccch
Q 025805 141 TWSSELGVLSDEQPRLIT----TFKPVRRGTNGGVTK 173 (248)
Q Consensus 141 TwASEiG~ls~~~PrlIt----t~k~Vp~GTnGgVS~ 173 (248)
+++|.++.| ||.|| .+||||+|++|=.-+
T Consensus 152 ~F~~~VasL----pRIiTl~d~~i~~~~~~~ss~L~l 184 (211)
T COG3167 152 QFVSDVASL----PRIITLHDLKIKPVPEGKSSILNL 184 (211)
T ss_pred HHHHHHhhc----ceeeeeecceeccCCCCCcceEEe
Confidence 356667777 77776 488999999875443
No 22
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=43.25 E-value=1.6e+02 Score=27.08 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=53.6
Q ss_pred HHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhH-HH
Q 025805 133 HYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQL-LV 211 (248)
Q Consensus 133 ~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~-~~ 211 (248)
-+.+-.+||-|==.|+.-++++ + ..++.|+ =|++|.+.+++++.+++..+. .+... +.+..++ ..
T Consensus 158 ~~~vw~sDt~AYf~Gr~fGk~K-L---~P~ISPk----KTwEG~iGg~~~~~~~~~~~~---~~~~~---~~~~~~~~~~ 223 (285)
T PRK11624 158 MILVWGADSGAYMFGKLFGKHK-L---APKVSPG----KTWEGFIGGLATAAVISWLFG---MWAPL---DVAPVTLLIC 223 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-C---CCcCCCC----CchhhhHHHHHHHHHHHHHHH---HHHcc---cccHHHHHHH
Confidence 3457789999999998877543 3 2356665 489999999999998886532 11110 0111111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025805 212 IPISAIAGLCGSLIDSLLGA 231 (248)
Q Consensus 212 ~~i~~~~G~~Gsl~DSlLGA 231 (248)
-.+..+.|.+|-+++|.+=.
T Consensus 224 ~~~~~~~~~~GDL~ES~lKR 243 (285)
T PRK11624 224 SIVAALASVLGDLTESMFKR 243 (285)
T ss_pred HHHHHHHHHHhHHHHHHHhh
Confidence 23345788999999998744
No 23
>PRK14393 membrane protein; Provisional
Probab=42.06 E-value=1.2e+02 Score=26.50 Aligned_cols=68 Identities=7% Similarity=0.021 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhh-ChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~-g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
.++............|..|.+..+++...-...+.. +... ..+....+..-..-|+|++.||-+.-+|
T Consensus 121 ~l~~~~~~~~~~~~tr~vSl~si~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lii~rHr~NI~Rl~~g~E 189 (194)
T PRK14393 121 VLGALAIFVLLVAKWRYVSLGSITAAAAMPLLVAFTEGSPL-LVAMTVVIALIVIFKHRENIQRLRAGTE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcchH-HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333344445567788888877766554443332 2221 1111222333456677777676554443
No 24
>PRK14397 membrane protein; Provisional
Probab=41.19 E-value=1.2e+02 Score=27.40 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhc
Q 025805 18 IAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRV 75 (248)
Q Consensus 18 l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~ 75 (248)
........|..|.+..++++.+-...+..+.... .++...+.--.+-|+|.+.||-+
T Consensus 128 f~~v~~itr~vSL~Si~a~~~~pi~~~~~~~~~~-~~~~~~~a~lvi~rHr~NI~RL~ 184 (222)
T PRK14397 128 CLLVIWRSGFVSLGSLTLVTALPVMLLITGKWKL-IPLALVVMALVYWSHRENIGRLA 184 (222)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcchHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788888888877666555444333211 11112233334566666555444
No 25
>PRK10484 putative transporter; Provisional
Probab=39.49 E-value=1.9e+02 Score=28.65 Aligned_cols=23 Identities=9% Similarity=-0.126 Sum_probs=17.9
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~ 43 (248)
.+.--|..|..|++++.++|.+.
T Consensus 423 lgl~wkr~n~~ga~~g~i~G~~~ 445 (523)
T PRK10484 423 VGFFTKRVPALAAKVALGFGIIL 445 (523)
T ss_pred HHHHhCcCChHHHHHHHHHHHHH
Confidence 34344569999999999999864
No 26
>PRK14419 membrane protein; Provisional
Probab=38.87 E-value=1.5e+02 Score=26.05 Aligned_cols=58 Identities=5% Similarity=-0.031 Sum_probs=27.7
Q ss_pred HhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccccc
Q 025805 24 RRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (248)
Q Consensus 24 r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~ 81 (248)
..|..+.+..++++..-...+..+......+....+.--..-|+|++.||-+..+|+|
T Consensus 135 itr~vsl~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~~H~~Ni~rl~~g~E~k 192 (199)
T PRK14419 135 LSRIVSLSSISAAIALPLLMFLLNIPLPYILFSLAAGLLVIWRHRSNIERLLAGTEPK 192 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3456777766666555444333221111111122222335567777777665555444
No 27
>PRK14407 membrane protein; Provisional
Probab=38.78 E-value=1.3e+02 Score=26.95 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 10 ~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
..++.........+..|..|.+..+++...-...+..+......++...+.--.+-|+|++.||-+.-+|
T Consensus 143 ~~l~~~~~~~~v~~~tr~vSL~Si~a~~~~p~~~~~~~~~~~~~~~~~~~~~lvi~rHr~NI~Rl~~G~E 212 (219)
T PRK14407 143 VGLGAATVFGVALAISRIVSLSSMLAALTAIALVCGLEQPLPYRLLVIAGGVYVIVRHRANIRRLLAGTE 212 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333334444556677888998888776665544332211111111122333456677777777665444
No 28
>PRK14414 membrane protein; Provisional
Probab=38.52 E-value=1.1e+02 Score=27.30 Aligned_cols=65 Identities=12% Similarity=-0.081 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhC-hhH--HHHHHHHHHhhhhhhhcchhhhhhc
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAG-SRF--GALLLVFFFTSSKLTKVGEERKRRV 75 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g-~~~--~~~Ll~FF~~sS~~Tk~k~~~K~~~ 75 (248)
.++.........+..|..|.+..+++...-...+..+ ... ...++...+..-..-|.|++.++-+
T Consensus 125 ~li~~~if~i~~~~tr~vSL~Si~a~~~~pi~~~~~~~~~~~~~~~~~~~~i~~lv~~rH~~NI~rl~ 192 (210)
T PRK14414 125 IPIYIACFLILMAITRFPTLSYGISFISFILVAWLGQHDMGKVLFSLLVVMIPILMYIPRMKEIKNKA 192 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333334444566678889988888877766554433 322 1233344555555666666655544
No 29
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=38.18 E-value=25 Score=23.70 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhhhhcchhhhhhcccc
Q 025805 50 FGALLLVFFFTSSKLTKVGEERKRRVDAD 78 (248)
Q Consensus 50 ~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~ 78 (248)
++.+++..++.+-.+-.|++++|++.|+.
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~k~~~e~a 41 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRNKKRFEEA 41 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence 34444444555777777788878877664
No 30
>PRK14392 membrane protein; Provisional
Probab=37.93 E-value=1.4e+02 Score=26.44 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 12 VLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 12 l~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
++...+........|..|.+..+++...-...+..+ .+...+....+.--..-|+|++.||-+..+|
T Consensus 123 l~~~~i~~~~~~~tr~vSl~Si~~~~~~~~~~~~~~-~~~~~~~~~~~~~lvi~rHr~NI~Rl~~g~E 189 (207)
T PRK14392 123 VIASAIWFSLILLTSMVSVASMIGMVLITIISLVYH-DWLLTTVACGLTVVVFYRHRSNIKRIKAGTE 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333444455566777777776665554433322 1111122222333455677776666554443
No 31
>PRK14412 membrane protein; Provisional
Probab=36.53 E-value=1.5e+02 Score=26.03 Aligned_cols=71 Identities=7% Similarity=0.037 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhh-ChhHHHHHHHHHHhhhhhhhcchhhhhhccccccc
Q 025805 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (248)
Q Consensus 10 ~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~-g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~ 81 (248)
..++............|..|.+..+++...-...+.. +.... .++...+..-..-|+|++.||-++-+|+|
T Consensus 119 ~~l~~~~v~~~~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~~~-~~~~~~~~~lii~rHr~NI~Rl~~g~E~k 190 (198)
T PRK14412 119 LGIIALAIGVAIIALTKYVSLGSITGSVTFVLLNAIFWNSTQL-FVFSLILASLAIFQHRSNIKRLLAGTESK 190 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3333334444455667888888887766554443322 21111 11122233346677777777766555544
No 32
>PRK14406 membrane protein; Provisional
Probab=35.69 E-value=1.5e+02 Score=26.13 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=33.0
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCC
Q 025805 20 IRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGG 83 (248)
Q Consensus 20 ~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g 83 (248)
......|..|.+..+++..+-...+..+... ......+.--.+-|+|++.||-++.+|+|=+
T Consensus 126 ~~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~--~~~~~~~~~lii~rHr~NI~Rl~~g~E~k~~ 187 (199)
T PRK14406 126 AIVALTKYVSLASIIGLLAASIFTFFFGKDY--WVIFLALTLFSVLRHKENIKRLLNGNERKTD 187 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 3344456677777776666554443333221 1111223334567888887877665554433
No 33
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=35.29 E-value=1.5e+02 Score=20.46 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHH
Q 025805 175 GLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLID 226 (248)
Q Consensus 175 Gt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~D 226 (248)
|-..+.+-++++|+.....+++- ....+.+..++-++|..+|
T Consensus 9 ~~iiG~~~G~ila~l~l~~GF~~----------tl~i~~~~~iG~~iG~~~d 50 (51)
T PF10031_consen 9 GKIIGGLIGLILALLILTFGFWK----------TLFILLFAAIGYYIGKYLD 50 (51)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Confidence 34556666677776655555431 1223334445666666665
No 34
>PRK14400 membrane protein; Provisional
Probab=32.99 E-value=1.7e+02 Score=25.83 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHHHHhh-ChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 16 SLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 16 ~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~-g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
..........|..|.+..+++...-...+.. +.+.........+.--..-|+|++.||-+.-+|
T Consensus 134 ~i~~i~~~itr~vSL~Si~a~~~~~i~~~~~~~~~~~~~~~~~~~~~lii~rHr~NI~Rl~~g~E 198 (201)
T PRK14400 134 VGYAVAYGLTRISSVGSLTGTALCVAGGFATYGPRHPVSWAGLAIALLIFVRHRENIRRLVRGEE 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333445557788888888777666543332 221011112222333456677777777655443
No 35
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=32.85 E-value=48 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=21.9
Q ss_pred hChh-HHHHHHHHHHhhhhhhhcchhhhhhcccccccCCCC
Q 025805 46 AGSR-FGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQR 85 (248)
Q Consensus 46 ~g~~-~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g~R 85 (248)
.|.+ +..-.++..+.+|..+-.-++.+++.+.+.++|+.|
T Consensus 26 ~G~Pff~~w~~~wv~lts~~~~~~y~l~~~~~~~~~~g~~~ 66 (66)
T PF11755_consen 26 FGMPFFYWWQLAWVVLTSVCMAIVYRLDEDRRAAREEGETR 66 (66)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccCCC
Confidence 4555 345555666677776665555533333444455555
No 36
>PRK09395 actP acetate permease; Provisional
Probab=32.83 E-value=1.1e+02 Score=30.57 Aligned_cols=23 Identities=30% Similarity=0.122 Sum_probs=18.0
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~ 43 (248)
.+.--|..|..|++++.++|.+.
T Consensus 451 lglfwkr~~~~gA~ag~i~G~~~ 473 (551)
T PRK09395 451 LSMYWKGLTTRGAVIGGWLGLIS 473 (551)
T ss_pred HHHhcCCCchhhHHHHHHHHHHH
Confidence 45445569999999999999763
No 37
>PRK14396 membrane protein; Provisional
Probab=32.74 E-value=2e+02 Score=25.25 Aligned_cols=61 Identities=10% Similarity=-0.053 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 18 IAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 18 l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
.....+..|..|.+..+++...-...+..+.... .+....+.--..-|+|++.||-+.-+|
T Consensus 126 ~~i~~~itr~vSl~Si~a~~~~~~~~~~~~~~~~-~~~~~~l~~lii~rHr~NI~Rl~~g~E 186 (190)
T PRK14396 126 WAVVFMIFRYSSLSSIISIISSCIYCAVTENFNS-SIFYIAMSIIILIKHRDNIIRMINGTE 186 (190)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344556678888888777666554433322111 122222333455677777776554433
No 38
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=32.62 E-value=3.2e+02 Score=23.35 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=6.0
Q ss_pred HHHHHHhc-CCChh
Q 025805 19 AIRSYRRK-SLNFS 31 (248)
Q Consensus 19 ~~~a~r~~-sLt~s 31 (248)
....+||+ ..|.+
T Consensus 51 ~~~~~~~~~~i~~~ 64 (240)
T PF01925_consen 51 AALRHRKHGNIDWK 64 (240)
T ss_pred HHHHHHHccccchh
Confidence 34445443 45553
No 39
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=31.57 E-value=1.7e+02 Score=23.54 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHhcCCChhhhHHHHHHHHHH-HhhChhHHHHHHHHHHhhhhhhhcchhh
Q 025805 19 AIRSYRRKSLNFSGAVSGFIVMTAH-IAAGSRFGALLLVFFFTSSKLTKVGEER 71 (248)
Q Consensus 19 ~~~a~r~~sLt~sGalaa~~vG~l~-~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~ 71 (248)
.+.+.+++ +..|+..|+++|.+. ...|-..+.-.+.|-+.+-...|.+++.
T Consensus 42 ~~~a~~~~--~~~g~~~~~~~GLl~D~~~~~~lG~~al~~~l~~~~~~~~~~~~ 93 (160)
T PF04093_consen 42 VFWALYRG--NRAGLWLGFIIGLLQDIYYGGPLGIYALAYVLIGYLVGKLRKRF 93 (160)
T ss_pred HHHHHHcc--chhHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 578999999999986 4444444555556666666666654443
No 40
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=31.38 E-value=87 Score=25.48 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhh
Q 025805 31 SGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERK 72 (248)
Q Consensus 31 sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K 72 (248)
+..+++.|+|++++ |+.++.+++|-+-|-.+-.++++.+
T Consensus 9 ~a~Ia~mVlGFi~f---WPlGla~Lay~iw~~rm~~~~~~~~ 47 (115)
T PF11014_consen 9 PAWIAAMVLGFIVF---WPLGLALLAYMIWGKRMFGFKRSCR 47 (115)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 56788889999886 4556777777777755554444333
No 41
>TIGR01528 NMN_trans_PnuC nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model.
Probab=31.17 E-value=3.4e+02 Score=23.27 Aligned_cols=54 Identities=24% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhc-CCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhh
Q 025805 11 AVLISSLIAIRSYRRK-SLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKL 64 (248)
Q Consensus 11 al~~~~~l~~~a~r~~-sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~ 64 (248)
+.+.+++=.+.+.|.| .-=+-|.++..+-+++.+-.+...-..+=.||+.-+.-
T Consensus 8 a~i~g~~~v~l~~k~~~~~w~~Giis~~ly~~i~~~~~lYgd~~lq~~y~~~~~y 62 (189)
T TIGR01528 8 AGLMGILCVVLASEGKVSNYIFGLISAVIYLYIAYQTGLYAEVLLQLFFVIANIY 62 (189)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 33456777776666665556665556676777776653
No 42
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=30.74 E-value=1.9e+02 Score=26.95 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=34.2
Q ss_pred cccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 025805 161 KPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSL 228 (248)
Q Consensus 161 k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~G~~Gsl~DSl 228 (248)
+||.|-.|=.-|+.|.+.+++-....+.. +.++++. +........+.|+ +.||+|-++=|=
T Consensus 200 ~Ki~P~vSPnKTveGl~GGilt~~~~~~~---l~~lTp~---~~lqa~~~~~~I~-l~GF~GdlvmSa 260 (303)
T COG4589 200 RKIVPKVSPNKTVEGLIGGILTTMIASAI---LGLLTPL---NTLQALLAGLLIG-LSGFCGDLVMSA 260 (303)
T ss_pred cccCCCcCCcchHHHHhhhHHHHHHHHHH---HHHhCCC---cHHHHHHHHHHHH-HHHhhhHHHHHH
Confidence 46777766677777777777666666542 3333321 1111111222344 899999887664
No 43
>PRK14403 membrane protein; Provisional
Probab=30.33 E-value=2.1e+02 Score=25.17 Aligned_cols=69 Identities=9% Similarity=0.093 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhh-ChhHHHHHHHHHHhhhhhhhcchhhhhhccccccc
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~-g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~ 81 (248)
+++............|..|.+..+++...-...+.. +... ..+...+..-.+-|+|++.||-++-+|+|
T Consensus 121 ~li~~~i~~~~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~~--~~~~~~~~~lvi~rHr~NI~Rl~~g~E~k 190 (196)
T PRK14403 121 GLVFTLTWLVIVMLTKYASLGSLVALYVSALLGYLLKGYDT--GMLILILAVLSTLRHSENIQRLLNGTERK 190 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333334444556667888888887776655544332 3222 12222234446678888777766544433
No 44
>PRK14398 membrane protein; Provisional
Probab=29.84 E-value=2.1e+02 Score=25.04 Aligned_cols=66 Identities=5% Similarity=-0.057 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccc
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDAD 78 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~ 78 (248)
+++............|..|.+...++...-...+..+... .++..++..-..-|+|++.||-+.-+
T Consensus 121 ~l~~~~~~~~~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~--~~~~~~~~~lvi~rHr~NI~Rl~~g~ 186 (191)
T PRK14398 121 TLAFVFVWLIVFFAFRYSSLASLSATSAAVAWSFFFQRNL--FLTLLTVAILIFLKHYRNIVNLLQGR 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333333444556677888887777766655433322221 11222233345667777777655443
No 45
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=29.26 E-value=1.1e+02 Score=30.64 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=35.4
Q ss_pred HHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHH
Q 025805 130 ILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGL 188 (248)
Q Consensus 130 ~~g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~ 188 (248)
+.|-+|--.+||.||=+|.-+++.- | +|| -=|++||+|.+.-.+..-.
T Consensus 413 laGiLalGiGDTmASiiG~r~G~~R-----W----~~T--kKTlEGT~Afivs~~iv~~ 460 (510)
T KOG2468|consen 413 LAGILALGIGDTMASIIGKRYGRIR-----W----SGT--KKTLEGTLAFIVSSFIVCL 460 (510)
T ss_pred hhhheeeccchHHHHHHhhhhccee-----c----CCC--cceeehhhHHHHHHHHHHH
Confidence 4567888899999999998876432 2 233 2478999999887776654
No 46
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.01 E-value=1.5e+02 Score=24.04 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHH--HhhChhHHHHHHHHHHhhhhh
Q 025805 31 SGAVSGFIVMTAH--IAAGSRFGALLLVFFFTSSKL 64 (248)
Q Consensus 31 sGalaa~~vG~l~--~~~g~~~~~~Ll~FF~~sS~~ 64 (248)
+|.+-++.+|+++ +++--+|+ |++|.++|--+
T Consensus 54 sGilVGa~iG~llD~~agTsPwg--lIv~lllGf~A 87 (116)
T COG5336 54 SGILVGAGIGWLLDKFAGTSPWG--LIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHH
Confidence 5555555666654 33333343 34444555433
No 47
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=27.88 E-value=7.7e+02 Score=26.35 Aligned_cols=33 Identities=24% Similarity=-0.067 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhceEEecCCCeee
Q 025805 214 ISAIAGLCGSLIDSLLGATLQFSGFCSVRNKVN 246 (248)
Q Consensus 214 i~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~~~v~ 246 (248)
...+.|+.+.+.-..+-+.+|..--.+.++++.
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~ 372 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVI 372 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCcccceeee
Confidence 345677777777777888888876666666653
No 48
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=27.75 E-value=1.2e+02 Score=24.18 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=6.2
Q ss_pred CCCCChhHHhhc
Q 025805 82 GGQRNWIQVLSN 93 (248)
Q Consensus 82 ~g~R~~~QVlaN 93 (248)
..+|+ .||+.=
T Consensus 64 As~~T-l~V~~i 74 (111)
T PF09946_consen 64 ASRRT-LQVFII 74 (111)
T ss_pred HHHHH-HHHHHH
Confidence 34444 488854
No 49
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=27.24 E-value=1.7e+02 Score=29.20 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHhcCCChhhhHHHHHHHHHHHhhChhH
Q 025805 3 TFLNQTLIAVLISSLIAIR-SYRRKSLNFSGAVSGFIVMTAHIAAGSRF 50 (248)
Q Consensus 3 ~~~~~~~~al~~~~~l~~~-a~r~~sLt~sGalaa~~vG~l~~~~g~~~ 50 (248)
.++..|.++++++.+++-- +.|.|.+|-.=.+|+.-.|+++|..|.+.
T Consensus 108 ~s~inWG~gLV~gallArelarr~~~vdYpllvAaaY~g~~vWh~GlSg 156 (453)
T PF02667_consen 108 ASWINWGFGLVVGALLARELARRVKGVDYPLLVAAAYSGFVVWHGGLSG 156 (453)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhccccc
Confidence 3678999999999999874 55556699988888888888776655543
No 50
>PRK14411 membrane protein; Provisional
Probab=27.01 E-value=2.6e+02 Score=24.79 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=29.5
Q ss_pred HHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 19 AIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 19 ~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
.......|..|.+..+++...-...+..+... .++.+.+.--..-|+|++.||-+.-+|
T Consensus 129 ~i~~~itr~vSl~Si~a~~~~pi~~~~~~~~~--~~~~~~~~~lii~rHr~NI~RLl~G~E 187 (204)
T PRK14411 129 LVLTAIMQNLTIPPLVFMLLFSIYTFWNNQEA--GLVFLIITLIMIFKFRKDIVDFFTGHG 187 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444456677776666554443333322221 122223344456777777777665444
No 51
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=26.56 E-value=84 Score=22.43 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhhhcchhhh
Q 025805 50 FGALLLVFFFTSSKLTKVGEERK 72 (248)
Q Consensus 50 ~~~~Ll~FF~~sS~~Tk~k~~~K 72 (248)
++.++++.++-|=...-||+++|
T Consensus 6 ~~ti~lvv~LYgY~yhLYrsek~ 28 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYRSQKK 28 (56)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Confidence 44555555555656666666644
No 52
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=26.37 E-value=2.4e+02 Score=28.02 Aligned_cols=49 Identities=8% Similarity=0.010 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHhcCCChhhhHHHHHHHHHHHhhChhHH
Q 025805 3 TFLNQTLIAVLISSLIAIR-SYRRKSLNFSGAVSGFIVMTAHIAAGSRFG 51 (248)
Q Consensus 3 ~~~~~~~~al~~~~~l~~~-a~r~~sLt~sGalaa~~vG~l~~~~g~~~~ 51 (248)
.|+..|.++++++.+++-- +.|.|..|..=.+|+.-.|+++|..|.+.-
T Consensus 105 ~s~inWG~gLV~gallAre~Ar~~~~vdY~lliAaaY~G~~~W~~GlS~S 154 (438)
T TIGR00366 105 ACWINWGFGLVVGAIFAREVARRVKGSDYPLLIACAYIGFLTWHGGLSGS 154 (438)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 4678999999999999874 555667999999999999987776665533
No 53
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=26.25 E-value=29 Score=31.84 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=11.4
Q ss_pred CcccCCCCCcccch
Q 025805 160 FKPVRRGTNGGVTK 173 (248)
Q Consensus 160 ~k~Vp~GTnGgVS~ 173 (248)
-|.||.||+|||-.
T Consensus 71 v~nvPCGTsGGVlI 84 (322)
T KOG2962|consen 71 VKNVPCGTSGGVLI 84 (322)
T ss_pred cccCCCCCCCcEEE
Confidence 45789999999854
No 54
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=25.21 E-value=93 Score=23.82 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=22.0
Q ss_pred CCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccc
Q 025805 27 SLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDA 77 (248)
Q Consensus 27 sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~ 77 (248)
.=|.+..+.|.+ ++...|.- +++.||+ =|.+||..++.|++-|+
T Consensus 37 ~TTa~d~l~a~~---iI~~~gv~---~~~ly~f-fs~Ltkl~~~d~~ks~~ 80 (84)
T PRK13718 37 ETTADDMLAAVF---VILYSGVL---LFILYFF-FSALTKLQKHDERKSDE 80 (84)
T ss_pred ccchhHHHHHHH---HHHHHhHH---HHHHHHH-HHHHHHHHhcccccchh
Confidence 334555555543 34444532 2222222 26788887777765443
No 55
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=25.09 E-value=1.2e+02 Score=28.82 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=6.1
Q ss_pred CCCChhHHhhcc
Q 025805 83 GQRNWIQVLSNS 94 (248)
Q Consensus 83 g~R~~~QVlaNg 94 (248)
+..+-.|-++|+
T Consensus 343 ~~~~~~~~~~~~ 354 (358)
T PLN00411 343 GKEKTPLLLNGK 354 (358)
T ss_pred ccccchhhhhcc
Confidence 333444557664
No 56
>PRK14413 membrane protein; Provisional
Probab=24.38 E-value=3.4e+02 Score=23.78 Aligned_cols=58 Identities=7% Similarity=0.022 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhc
Q 025805 18 IAIRSYRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRV 75 (248)
Q Consensus 18 l~~~a~r~~sLt~sGalaa~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~ 75 (248)
........|..|.+..++++..-...+..+......+....+..-..-|+|++.||-+
T Consensus 135 ~~i~~~~tr~vSl~Si~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~rHr~NI~Rl~ 192 (197)
T PRK14413 135 YFILGLFTRIVSIRSIAIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLI 192 (197)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555677888888777666554433321111111111122245567777666544
No 57
>PRK14394 membrane protein; Provisional
Probab=24.17 E-value=3e+02 Score=24.22 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHhh-ChhHHHHHHHHHHhhhhhhhcchhhhhhccccc
Q 025805 8 TLIAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHIAA-GSRFGALLLVFFFTSSKLTKVGEERKRRVDADF 79 (248)
Q Consensus 8 ~~~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~~~-g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~ 79 (248)
|...++............|..|.+..+++...-...+.. +.. ..++.+.+.--..-|+|.+.||-+.-+|
T Consensus 118 p~~~l~~~~v~~i~~~~tr~vSl~Si~a~~~~~~~~~~~~~~~--~~~~~~~~~~lvi~rHr~NI~Rl~~g~E 188 (195)
T PRK14394 118 YKVAICFLTFWIICFLLCKYASLSSIVSTLIALLFICTYYTIV--QSVIFTITALLIITQHTDNIIRMLNKSE 188 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333333334444555667777766665554433321 211 1122222333456677777776655443
No 58
>PRK12488 acetate permease; Provisional
Probab=24.01 E-value=2.1e+02 Score=28.59 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=17.6
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~ 43 (248)
.+..-|..|..|++++.++|.+.
T Consensus 449 lgl~wkr~t~~ga~ag~i~G~~~ 471 (549)
T PRK12488 449 LSMFWKGLTTRGAVAGSYAGLVS 471 (549)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 34444559999999999999753
No 59
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=23.69 E-value=3.7e+02 Score=21.18 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=27.1
Q ss_pred HHHHHHHH-HhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCCCCCh-----hHHhhcchHHHHHHHH
Q 025805 36 GFIVMTAH-IAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNW-----IQVLSNSGIAAVLVVI 103 (248)
Q Consensus 36 a~~vG~l~-~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g~R~~-----~QVlaNg~va~~~al~ 103 (248)
|++++++. +..|.-|+.++ | +++..|..+..+++..+.+. .+.+++...+..++.+
T Consensus 3 avlvaa~~~~~~G~lWY~pl--F----------g~~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~a~~la~~ 64 (126)
T PF08570_consen 3 AVLVAAIAAFVLGFLWYGPL--F----------GKAWMRAMGITPEDAKKGNPAKPFIISFLGSLVQAYFLAHL 64 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHH--H----------HHHHHHHcCCCcccccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 45555543 34555555555 3 55555555443333223333 3455555555555444
No 60
>PRK09459 pspG phage shock protein G; Reviewed
Probab=22.54 E-value=2.6e+02 Score=21.15 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.0
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 025805 170 GVTKAGLLAAVAAGSVIGLT 189 (248)
Q Consensus 170 gVS~lGt~As~~Ga~~Ig~~ 189 (248)
|||++|.+++++=++.+-+.
T Consensus 18 GiSllgv~aAl~va~~vM~l 37 (76)
T PRK09459 18 GISLLGIIAALGVATLVMFL 37 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 79999999988877766553
No 61
>PRK14415 membrane protein; Provisional
Probab=22.49 E-value=3.7e+02 Score=23.91 Aligned_cols=70 Identities=9% Similarity=-0.017 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH-----HHhhChhHHHHHHHHHHhhhhhhhcchhhhhhccccccc
Q 025805 11 AVLISSLIAIRSYRRKSLNFSGAVSGFIVMTA-----HIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKE 81 (248)
Q Consensus 11 al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l-----~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~ 81 (248)
.++............|..|.+..++++. ..+ .+..+......++...+.--..-|+|++.||-+..+|+|
T Consensus 136 ~l~~~~v~~~~~~itr~vSl~Si~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~rHr~NI~Rl~~g~E~k 210 (216)
T PRK14415 136 AIFGGEVLIIGAGLSGFASLGSITGVVG-AYALLVPLTLISGFPTEYMIYAVIGSLLITIMHRDNIKRLLAGKERK 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3333333334455567777776665543 111 111121111111122223335678888777766555444
No 62
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.13 E-value=1.6e+02 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=22.9
Q ss_pred hhhcccccccC-CCCChhHHhhcchHHHHHHHH
Q 025805 72 KRRVDADFKEG-GQRNWIQVLSNSGIAAVLVVI 103 (248)
Q Consensus 72 K~~~~~~~~~~-g~R~~~QVlaNg~va~~~al~ 103 (248)
++++++-.++. ..+.|.++++++..+..++++
T Consensus 88 ~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~l 120 (193)
T PF06738_consen 88 IERLDEIDREPPRYPPWLVILAAGLASAAFALL 120 (193)
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44454443333 577899999999999988876
No 63
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=22.07 E-value=8.5e+02 Score=24.82 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=58.0
Q ss_pred HHHHHHhcCCChhhhHH-HHHHHHHHHhhChhHHHHHHHHHHhhhhhhhcchhhhhhcccccccCCCCChhHHhhcchHH
Q 025805 19 AIRSYRRKSLNFSGAVS-GFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIA 97 (248)
Q Consensus 19 ~~~a~r~~sLt~sGala-a~~vG~l~~~~g~~~~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g~R~~~QVlaNg~va 97 (248)
.-.+.-.+.+++.+=++ ++++|..+...|++ -+|| +.|...|+++-++.+
T Consensus 22 ~kya~~~g~l~p~~Rv~~g~~~g~~l~~~g~~-------------------l~~k----------~~~~~~~~L~g~G~a 72 (745)
T PF10101_consen 22 LKYAIDAGWLGPAVRVALGAALGLALLAAGER-------------------LRRK----------GYRAFAQALAGGGIA 72 (745)
T ss_pred HHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHc----------ccchHHHHHHHHHHH
Confidence 34566778999998877 44566666666652 2222 458889999999999
Q ss_pred HHHHHHHHHHhCCCCcccCcCchhHHHHHHHHHHHHHHhhhchhh-hhhhh
Q 025805 98 AVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTW-SSELG 147 (248)
Q Consensus 98 ~~~al~~~~~~~~~~~~~~~~~~~l~~~l~~~~~g~~A~~~aDTw-ASEiG 147 (248)
.+..-.+....-.+ .-+++. .+.....++..+...|+-+ +-++.
T Consensus 73 ~ly~t~~aa~~~y~-----l~~~~~-af~~~~~v~~~~~~la~r~~~~~la 117 (745)
T PF10101_consen 73 VLYLTVFAAYHLYG-----LIPPPV-AFALLALVTAAAVALALRYDSPALA 117 (745)
T ss_pred HHHHHHHHHHHHHH-----hcCHHH-HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98755443221110 011122 2234456788889999999 44443
No 64
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=21.92 E-value=77 Score=22.36 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=23.7
Q ss_pred HHHHHHhhhchhhhhhhhccCCCCceeeeCCcccCC
Q 025805 130 ILGHYCCCNGDTWSSELGVLSDEQPRLITTFKPVRR 165 (248)
Q Consensus 130 ~~g~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~ 165 (248)
+++--+|-+.|+.||--|... |--+-.|+|.|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiF---pLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIF---PLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCcc---ccccccccCChh
Confidence 456678899999999877654 545566777653
No 65
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=21.57 E-value=3.4e+02 Score=24.93 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=40.2
Q ss_pred chhhhhhhhccCCCCceeeeCCcccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccchhhhhh-hHHHHHHHHH
Q 025805 139 GDTWSSELGVLSDEQPRLITTFKPVRRGTNGGVTKAGLLAAVAAGSVIGLTFVLFGFFTATCTRDIALK-QLLVIPISAI 217 (248)
Q Consensus 139 aDTwASEiG~ls~~~PrlItt~k~Vp~GTnGgVS~lGt~As~~Ga~~Ig~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~ 217 (248)
.||-|+-+|.-.++.. -|+.|- -|+.|.++.+.-++++..+++ +++....+...+.. ...+...+.+
T Consensus 168 cDt~AdtvGRKfG~~t------pk~akn----KSlAGSIgaft~Gvf~c~vy~--gyf~s~g~~~l~~s~r~~~~~l~l~ 235 (269)
T KOG4453|consen 168 CDTIADTVGRKFGSTT------PKYAKN----KSLAGSIGAFTFGVFICIVYL--GYFSSLGPDYLHMSWRETTLQLVLM 235 (269)
T ss_pred hhhHHHHHhhhccccC------CCcCCC----ccccchHHHHHHHHHHHHHHH--HHHhccCcchhccccccchHHHHHH
Confidence 3999999996655322 123332 366677766666666665432 33321111111111 1122334556
Q ss_pred HHHHHHHHHHH
Q 025805 218 AGLCGSLIDSL 228 (248)
Q Consensus 218 ~G~~Gsl~DSl 228 (248)
.|+.+.+.+|+
T Consensus 236 ~g~vaAlvEsl 246 (269)
T KOG4453|consen 236 VGMVAALVESL 246 (269)
T ss_pred HHHHHHHHhcC
Confidence 77777777764
No 66
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=21.29 E-value=4e+02 Score=26.17 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=18.3
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~ 43 (248)
.+.--|..|..|++++.++|.+.
T Consensus 418 lgl~wkr~t~~ga~~g~i~G~~~ 440 (502)
T PRK15419 418 FSVMWSRMTRNGALAGMIIGALT 440 (502)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Confidence 34445669999999999999864
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=21.12 E-value=3e+02 Score=27.55 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=18.1
Q ss_pred HHHHhcCCChhhhHHHHHHHHHH
Q 025805 21 RSYRRKSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 21 ~a~r~~sLt~sGalaa~~vG~l~ 43 (248)
.+..-|..|..|++++.++|.+.
T Consensus 449 lgl~Wkr~n~~GA~ag~i~G~~~ 471 (549)
T TIGR02711 449 LSMYWSKLTTRGAMIGGWLGLIT 471 (549)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 44445579999999999999753
No 68
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=21.11 E-value=40 Score=27.88 Aligned_cols=22 Identities=50% Similarity=0.794 Sum_probs=17.0
Q ss_pred hhhhhhhhccCCCCceeeeCCcc
Q 025805 140 DTWSSELGVLSDEQPRLITTFKP 162 (248)
Q Consensus 140 DTwASEiG~ls~~~PrlItt~k~ 162 (248)
=|-.-|+|+|.+..| +||++|+
T Consensus 26 ~t~eGe~GILp~H~P-lit~Lk~ 47 (135)
T COG0355 26 PTTEGELGILPGHAP-LITALKP 47 (135)
T ss_pred ecCCeeeecCCCCcc-ceeeecC
Confidence 355679999999999 7777663
No 69
>PRK14418 membrane protein; Provisional
Probab=20.94 E-value=5.9e+02 Score=23.06 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 025805 10 IAVLISSLIAIRSYRRKSLNFSGAVSGFIVMTAHI 44 (248)
Q Consensus 10 ~al~~~~~l~~~a~r~~sLt~sGalaa~~vG~l~~ 44 (248)
.+++............|..|.+..++++.+-...+
T Consensus 134 ~~li~~~vf~iv~~itr~vSL~Si~a~~~~~i~~~ 168 (236)
T PRK14418 134 LALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMW 168 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33433344444556677888888888877766544
No 70
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.29 E-value=1.8e+02 Score=22.96 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=9.0
Q ss_pred cCCCCChhHHhhcc
Q 025805 81 EGGQRNWIQVLSNS 94 (248)
Q Consensus 81 ~~g~R~~~QVlaNg 94 (248)
+.+.|+..+=++.-
T Consensus 32 r~~~~~~~~~l~~~ 45 (100)
T TIGR02230 32 KNATRSIWEGLGMF 45 (100)
T ss_pred hcCCCcHHHHHHHH
Confidence 34567777777654
No 71
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.19 E-value=1.9e+02 Score=26.14 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhceEEecCC
Q 025805 208 QLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVR 242 (248)
Q Consensus 208 ~~~~~~i~~~~G~~Gsl~DSlLGAtlQ~~~~~~~~ 242 (248)
+|.+++++...|++..++ +|+-..|...|..-.
T Consensus 52 ~~~~~i~gi~~g~l~am~--vl~rra~ra~Y~qie 84 (224)
T PF13829_consen 52 WWYWLIIGILLGLLAAMI--VLSRRAQRAAYAQIE 84 (224)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 345566777888887776 788877777665433
Done!