Query 025805
Match_columns 248
No_of_seqs 103 out of 426
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 76.0 12 0.0004 35.6 9.4 83 22-105 416-511 (530)
2 2xq2_A Sodium/glucose cotransp 60.8 74 0.0025 30.5 11.5 19 25-43 448-466 (593)
3 3l1l_A Arginine/agmatine antip 34.4 1E+02 0.0036 27.2 7.4 26 44-69 403-428 (445)
4 2k1k_A Ephrin type-A receptor 32.0 77 0.0026 19.7 4.3 17 26-43 6-22 (38)
5 2l34_A TYRO protein tyrosine k 30.4 64 0.0022 19.5 3.6 25 31-59 6-30 (33)
6 1jb0_M Photosystem 1 reaction 22.8 1.1E+02 0.0036 18.5 3.5 26 1-26 1-26 (31)
7 2l2t_A Receptor tyrosine-prote 17.0 1.5E+02 0.0052 19.1 3.5 14 29-42 7-20 (44)
8 2ks1_B Epidermal growth factor 13.0 1E+02 0.0034 19.9 1.8 14 29-42 8-21 (44)
9 1wj6_A KIAA0049 protein, RSGI 12.4 71 0.0024 24.3 1.1 17 231-247 52-68 (101)
10 2k21_A Potassium voltage-gated 11.5 1.3E+02 0.0043 24.0 2.3 25 54-78 62-86 (138)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=76.05 E-value=12 Score=35.61 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=43.6
Q ss_pred HHHhcCCChhhhHHHHHHHHHHHh----h--ChhH-------HHHHHHHHHhhhhhhhcchhhhhhcccccccCCCCChh
Q 025805 22 SYRRKSLNFSGAVSGFIVMTAHIA----A--GSRF-------GALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWI 88 (248)
Q Consensus 22 a~r~~sLt~sGalaa~~vG~l~~~----~--g~~~-------~~~Ll~FF~~sS~~Tk~k~~~K~~~~~~~~~~g~R~~~ 88 (248)
+.--|..|..|++++.++|.+... . .+++ +..-++.++.-|++||-+.+++++.|.+.++-..+.+.
T Consensus 416 gl~wkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~~~~~~~~~~~~~~~~~~ 495 (530)
T 3dh4_A 416 GLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSF 495 (530)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCSSSSCTTCCCCCCSCCCCCTTH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchhhccCcchH
Confidence 333456899999999999986421 1 1111 22223345667888877666554444433222234444
Q ss_pred HHhhcchHHHHHHHHHH
Q 025805 89 QVLSNSGIAAVLVVIVW 105 (248)
Q Consensus 89 QVlaNg~va~~~al~~~ 105 (248)
++.+-..+..+ +.+|.
T Consensus 496 ~~~~~~~~~~~-~~~y~ 511 (530)
T 3dh4_A 496 NIAAYGIMIVL-AVLYT 511 (530)
T ss_dssp HHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHH-HHHHH
Confidence 44433333333 33443
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=60.76 E-value=74 Score=30.50 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.1
Q ss_pred hcCCChhhhHHHHHHHHHH
Q 025805 25 RKSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 25 ~~sLt~sGalaa~~vG~l~ 43 (248)
-|..|..|++++.++|.+.
T Consensus 448 wkr~~~~gA~~g~i~G~~~ 466 (593)
T 2xq2_A 448 WKKTTSKGAIIGVVASIPF 466 (593)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 4558999999999999864
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=34.37 E-value=1e+02 Score=27.22 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=12.3
Q ss_pred HhhChhHHHHHHHHHHhhhhhhhcch
Q 025805 44 IAAGSRFGALLLVFFFTSSKLTKVGE 69 (248)
Q Consensus 44 ~~~g~~~~~~Ll~FF~~sS~~Tk~k~ 69 (248)
+..++.-....+.+.+.+-..-.+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 403 VGSGAKEVMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33565544444445555554443333
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.02 E-value=77 Score=19.70 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.0
Q ss_pred cCCChhhhHHHHHHHHHH
Q 025805 26 KSLNFSGAVSGFIVMTAH 43 (248)
Q Consensus 26 ~sLt~sGalaa~~vG~l~ 43 (248)
+.|+ .|+++++++|.+.
T Consensus 6 ~~ls-~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 6 RGLT-GGEIVAVIFGLLL 22 (38)
T ss_dssp TTCC-HHHHHHHHHHHHH
T ss_pred CCCC-CCceeeeehHHHH
Confidence 3455 7999999999764
No 5
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=30.44 E-value=64 Score=19.53 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHhhChhHHHHHHHHHH
Q 025805 31 SGAVSGFIVMTAHIAAGSRFGALLLVFFF 59 (248)
Q Consensus 31 sGalaa~~vG~l~~~~g~~~~~~Ll~FF~ 59 (248)
.|+++++++|-+.... ++.+++||+
T Consensus 6 ~gaIaGIVvgdi~~t~----~i~~~vy~~ 30 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTV----LIALAVYFL 30 (33)
T ss_dssp THHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred cceEEeEeHHHHHHHH----HHHHHHhhe
Confidence 5889999998875432 345555554
No 6
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=22.82 E-value=1.1e+02 Score=18.47 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhc
Q 025805 1 METFLNQTLIAVLISSLIAIRSYRRK 26 (248)
Q Consensus 1 ~~~~~~~~~~al~~~~~l~~~a~r~~ 26 (248)
|+-+-.++.+++++++.-++++.|..
T Consensus 1 m~Isd~Qi~iAL~~Al~~~iLA~rLg 26 (31)
T 1jb0_M 1 MALTDTQVYVALVIALLPAVLAFRLS 26 (31)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999998854
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.99 E-value=1.5e+02 Score=19.06 Aligned_cols=14 Identities=0% Similarity=-0.114 Sum_probs=8.9
Q ss_pred ChhhhHHHHHHHHH
Q 025805 29 NFSGAVSGFIVMTA 42 (248)
Q Consensus 29 t~sGalaa~~vG~l 42 (248)
+..+++|+-+||-+
T Consensus 7 s~~~aIA~gVVgGv 20 (44)
T 2l2t_A 7 ARTPLIAAGVIGGL 20 (44)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred CCcceEEEeehHHH
Confidence 45667777776643
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.99 E-value=1e+02 Score=19.89 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=7.9
Q ss_pred ChhhhHHHHHHHHH
Q 025805 29 NFSGAVSGFIVMTA 42 (248)
Q Consensus 29 t~sGalaa~~vG~l 42 (248)
+..+++|+-+||-+
T Consensus 8 s~~~~IA~gVVgGv 21 (44)
T 2ks1_B 8 PKIPSIATGMVGAL 21 (44)
T ss_dssp SCSSSSTHHHHHHH
T ss_pred CCcceEEeehhHHH
Confidence 44556666666543
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=12.39 E-value=71 Score=24.30 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.3
Q ss_pred hhhhceEEecCCCeeee
Q 025805 231 ATLQFSGFCSVRNKVNV 247 (248)
Q Consensus 231 AtlQ~~~~~~~~~~v~~ 247 (248)
.++|-+|.|++++.|++
T Consensus 52 ~~~~IkY~DEenD~V~i 68 (101)
T 1wj6_A 52 NTIQIKYLDEENEEVSI 68 (101)
T ss_dssp SSBCCEEECTTSCEECC
T ss_pred CceEEEEecCCCCEEEE
Confidence 57899999999999986
No 10
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=11.48 E-value=1.3e+02 Score=24.03 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhhhcchhhhhhcccc
Q 025805 54 LLVFFFTSSKLTKVGEERKRRVDAD 78 (248)
Q Consensus 54 Ll~FF~~sS~~Tk~k~~~K~~~~~~ 78 (248)
+..||+.|-.++..|.+|.++-++.
T Consensus 62 ffgff~~GImLsYiRSKk~E~s~DP 86 (138)
T 2k21_A 62 FFGFFTLGIMLSYIRSKKLEHSNDP 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHhHhhhccccCCc
Confidence 3447788888888888877665443
Done!