Query 025805
Match_columns 248
No_of_seqs 103 out of 426
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 17:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025805.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025805hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 21.9 13 0.00093 25.5 0.9 13 28-40 4-16 (91)
2 d1jb0m_ f.23.19.1 (M:) Subunit 13.1 1.1E+02 0.0081 16.7 3.6 24 2-25 2-25 (31)
3 d1iz6a1 b.34.5.2 (A:2-70) Euka 12.7 28 0.0021 22.5 0.7 23 148-170 17-39 (69)
4 d1bkba1 b.34.5.2 (A:4-74) Euka 11.5 30 0.0022 22.6 0.5 23 148-170 20-42 (71)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 11.0 83 0.0061 17.0 2.3 23 1-23 1-23 (30)
6 d2eifa1 b.34.5.2 (A:1-73) Euka 9.1 44 0.0032 21.8 0.7 22 149-170 22-43 (73)
7 d1ciia1 f.1.1.1 (A:451-624) Co 5.8 1.2E+02 0.009 23.1 2.0 22 130-151 66-87 (174)
8 d1ml8a_ d.227.1.2 (A:) Hypothe 5.6 3.3E+02 0.024 18.2 4.3 26 164-189 27-52 (134)
9 d1dpta_ d.80.1.3 (A:) D-dopach 5.3 86 0.0063 21.6 0.7 35 133-170 75-112 (117)
10 d1hfoa_ d.80.1.3 (A:) Micropha 5.2 94 0.0069 21.3 0.9 33 134-169 75-110 (113)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=21.93 E-value=13 Score=25.54 Aligned_cols=13 Identities=15% Similarity=-0.028 Sum_probs=7.0
Q ss_pred CChhhhHHHHHHH
Q 025805 28 LNFSGAVSGFIVM 40 (248)
Q Consensus 28 Lt~sGalaa~~vG 40 (248)
|||.|=.|.-.--
T Consensus 4 ldP~gp~a~~i~~ 16 (91)
T d1fftb2 4 LDPKGQIGLEQRS 16 (91)
T ss_dssp SSCCSCCHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 5666655544433
No 2
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=13.14 E-value=1.1e+02 Score=16.71 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 025805 2 ETFLNQTLIAVLISSLIAIRSYRR 25 (248)
Q Consensus 2 ~~~~~~~~~al~~~~~l~~~a~r~ 25 (248)
.-|-.+..++++++++=+++++|.
T Consensus 2 ~lsdtqv~valvial~pg~lafrl 25 (31)
T d1jb0m_ 2 ALTDTQVYVALVIALLPAVLAFRL 25 (31)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888898888888888874
No 3
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.68 E-value=28 Score=22.54 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=19.6
Q ss_pred ccCCCCceeeeCCcccCCCCCcc
Q 025805 148 VLSDEQPRLITTFKPVRRGTNGG 170 (248)
Q Consensus 148 ~ls~~~PrlItt~k~Vp~GTnGg 170 (248)
+..+++|+.|+....+.||.+|+
T Consensus 17 i~~~g~p~~V~e~~~~kpGk~G~ 39 (69)
T d1iz6a1 17 IIIDDEPCRIVNITVSSPGKHGS 39 (69)
T ss_dssp EEETTEEEEEEEEEECCCCTTSC
T ss_pred EEECCEEEEEEEEEEEcCCCcCc
Confidence 34578999999999999999875
No 4
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=11.53 E-value=30 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.7
Q ss_pred ccCCCCceeeeCCcccCCCCCcc
Q 025805 148 VLSDEQPRLITTFKPVRRGTNGG 170 (248)
Q Consensus 148 ~ls~~~PrlItt~k~Vp~GTnGg 170 (248)
+..+++|+.|+..+.+.||.+|+
T Consensus 20 i~~~g~p~~V~~~~~~kpgk~G~ 42 (71)
T d1bkba1 20 VVIDGEPCRVVEIEKSKTGKHGS 42 (71)
T ss_dssp EEETTEEEEEEEEEEECCSTTSC
T ss_pred EEECCEEEEEEEEEEECCCCCCc
Confidence 45688999999999999999874
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.03 E-value=83 Score=16.98 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=14.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH
Q 025805 1 METFLNQTLIAVLISSLIAIRSY 23 (248)
Q Consensus 1 ~~~~~~~~~~al~~~~~l~~~a~ 23 (248)
||...+-++++.++++++-..-+
T Consensus 1 me~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 1 METITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceeehHHHHHHHHHHHHHHHHh
Confidence 67766777777777666544433
No 6
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.10 E-value=44 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.8
Q ss_pred cCCCCceeeeCCcccCCCCCcc
Q 025805 149 LSDEQPRLITTFKPVRRGTNGG 170 (248)
Q Consensus 149 ls~~~PrlItt~k~Vp~GTnGg 170 (248)
..+++|+.|+....+.||.+|.
T Consensus 22 ~~~g~p~~V~e~~~~kpGk~G~ 43 (73)
T d2eifa1 22 MIDGVPCEIVDISVSKPGKHGG 43 (73)
T ss_dssp EETTEEEEEEEEEECCCCSSSC
T ss_pred EECCEEEEEEEEEEECCCCccc
Confidence 3478999999999999999883
No 7
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=1.2e+02 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=16.8
Q ss_pred HHHHHHhhhchhhhhhhhccCC
Q 025805 130 ILGHYCCCNGDTWSSELGVLSD 151 (248)
Q Consensus 130 ~~g~~A~~~aDTwASEiG~ls~ 151 (248)
.+-++-...+|.+|.-++.+||
T Consensus 66 I~nAlk~~d~~~ma~nl~k~sK 87 (174)
T d1ciia1 66 IAAALESVKLSDISSNLNRFSR 87 (174)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHH
Confidence 4457777888888888888774
No 8
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=5.61 E-value=3.3e+02 Score=18.25 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=21.8
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHH
Q 025805 164 RRGTNGGVTKAGLLAAVAAGSVIGLT 189 (248)
Q Consensus 164 p~GTnGgVS~lGt~As~~Ga~~Ig~~ 189 (248)
.+|+|.|.++.=++.+.+|+.....+
T Consensus 27 ~gg~~~gp~P~elllaal~~C~~~~~ 52 (134)
T d1ml8a_ 27 GNSGDKAPSPMEMVLMAAGGCSAIDV 52 (134)
T ss_dssp TTTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 37999999999999998888877543
No 9
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.33 E-value=86 Score=21.65 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHhhhchhhhhhhhccCCCCceeeeCCcccCC---CCCcc
Q 025805 133 HYCCCNGDTWSSELGVLSDEQPRLITTFKPVRR---GTNGG 170 (248)
Q Consensus 133 ~~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~---GTnGg 170 (248)
.++....|-...|+|+- +=|.-.+|..++| |.||-
T Consensus 75 ~~s~~i~~~l~~~LgI~---~~RiyI~f~~~~~~~~G~nG~ 112 (117)
T d1dpta_ 75 SHSAHFFEFLTKELALG---QDRILIRFFPLESWQIGKIGT 112 (117)
T ss_dssp HHHHHHHHHHHHHHTCC---GGGEEEEEEEECGGGCEETTE
T ss_pred HHHHHHHHHHHHHcCCC---cCeEEEEEEECCHHHeeECCE
Confidence 57777889999999994 4577788888887 88884
No 10
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=5.21 E-value=94 Score=21.30 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHhhhchhhhhhhhccCCCCceeeeCCcccCC---CCCc
Q 025805 134 YCCCNGDTWSSELGVLSDEQPRLITTFKPVRR---GTNG 169 (248)
Q Consensus 134 ~A~~~aDTwASEiG~ls~~~PrlItt~k~Vp~---GTnG 169 (248)
++....|-...|+|+ .+=|...+|..++| |.||
T Consensus 75 ~s~~i~~~l~~~LgI---~~~RiyI~f~d~~~~~~G~nG 110 (113)
T d1hfoa_ 75 HSAKLFDHLNTKLGI---PKNRMYIHFVNLNGDDVGWNG 110 (113)
T ss_dssp HHHHHHHHHHHHHCC---CGGGEEEEEEECCGGGEEETT
T ss_pred HHHHHHHHHHHHcCC---CcceEEEEEEECCHHHeeeCC
Done!