BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025806
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
From Thermosynechococcus Elongatus
pdb|2J86|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
pdb|2J86|B Chain B, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
Length = 240
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 33/198 (16%)
Query: 68 VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
+ + +DAF++ + VADG+ G A L + +ED++ +DP
Sbjct: 12 IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
L+R+A HA A + +G+ V++ + E+ A VGD + RK Q
Sbjct: 70 TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ 129
Query: 174 ITFSSSPQ--------------EHYFDCPYQ-LSSEAVGQTYLDAM-VTTVELIEGDTIV 217
+ +S E P++ + S+ +G+ L + + ++L GD ++
Sbjct: 130 LQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLL 189
Query: 218 MGSDGLFDNVFDHEVVSM 235
+ SDGL + + D +V+S+
Sbjct: 190 LCSDGLTEELTD-DVISI 206
>pdb|2Y09|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 68 VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
+ + +DAF++ + VADG+ G A L + +ED++ +DP
Sbjct: 12 IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
L+R+A HA A + +G+ V++ + E+ A VG + RK Q
Sbjct: 70 TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGASRIYRWRKDQ 129
Query: 174 ITFSSSPQ--------------EHYFDCPYQ-LSSEAVGQTYLDAM-VTTVELIEGDTIV 217
+ +S E P++ + S+ +G+ L + + ++L GD ++
Sbjct: 130 LQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLL 189
Query: 218 MGSDGLFDNVFDHEVVSM 235
+ SDGL + + D +V+S+
Sbjct: 190 LCSDGLTEELTD-DVISI 206
>pdb|2XZV|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 68 VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
+ + +DAF++ + VADG+ G A L + +ED++ +DP
Sbjct: 12 IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
L+R+A HA A + +G+ V++ + E+ A VGD + RK Q
Sbjct: 70 TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ 129
Query: 174 ITFSSSPQ--------------EHYFDCPYQ-LSSEAVGQTYLDAM-VTTVELIEGDTIV 217
+ +S E P++ + S+ +G+ L + + ++L GD ++
Sbjct: 130 LQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLL 189
Query: 218 MGSDGLFDNVFDHEVVSM 235
+ S GL + + D +V+S+
Sbjct: 190 LCSAGLTEELTD-DVISI 206
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 193 SEAVGQTYL------DAMVTTVELI-EGDTIVMGSDGLFDNVFDHEVVSMTTRFI 240
S ++G YL D VT V+ + E D +++ SDG++D + D E M + I
Sbjct: 197 SRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRI 251
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 193 SEAVGQTYL------DAMVTTVELI-EGDTIVMGSDGLFDNVFDHEVVSMTTRFI 240
S ++G YL D VT V+ + E D +++ SDG++D + D E M + I
Sbjct: 194 SRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRI 248
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 193 SEAVGQTYL------DAMVTTVELI-EGDTIVMGSDGLFDNVFDHEVVSMTTRFI 240
S ++G YL D VT V+ + E D +++ SDG++D + D E M + I
Sbjct: 209 SRSIGDRYLKPSIIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRI 263
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 193 SEAVGQTYL------DAMVTTVELI-EGDTIVMGSDGLFDNVFDHEVVSMTTRFI 240
S ++G YL D VT+V + E D +++ SDGL+D + + EV + + I
Sbjct: 203 SRSIGDRYLKPSVIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEVCDLARKRI 257
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 39/186 (20%)
Query: 79 SCYNGG-VIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAAT 137
S Y G ++A+ADG+ G A V + +L+ A ++D E D L+ K AA
Sbjct: 46 SVYAGARLLALADGMGGHAAGEV-----ASQLVIAALAHLDDDEPGGD---LLAKLDAAV 97
Query: 138 SSVGSA---------------TVIVAMLERNGILKVASVGDCGLRIIRKGQITFSS---- 178
+ SA T + A+L L + +GD ++R G++T +
Sbjct: 98 RAGNSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDT 157
Query: 179 -----------SPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNV 227
+P+E + L A+ ++ +T E GD ++ SDGL D V
Sbjct: 158 FVQTLVDEGRITPEEAHSHPQRSLIMRALTGHEVEPTLTMREARAGDRYLLCSDGLSDPV 217
Query: 228 FDHEVV 233
D ++
Sbjct: 218 SDETIL 223
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|F Chain F, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|F Chain F, Crystal Structure Of A Translation Initiation Complex
Length = 284
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 125 DPQILMRKAHAATSSVGSATVIV---AMLERNGILKVASVGDCGLRIIRKGQITFSSSPQ 181
+P+++ + +AA S+ +V L R +L + +C R+++ + SP
Sbjct: 155 EPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKD----LTDSPS 210
Query: 182 EHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRF-- 239
E + +L + Q D+ T +EG ++ G+ DN+ +S +F
Sbjct: 211 EETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKL 270
Query: 240 IDVSE 244
ID+ E
Sbjct: 271 IDIKE 275
>pdb|3FJC|A Chain A, Crystal Structure Of L44w Mutant Of Human Acidic
Fibroblast Growth Factor
pdb|3FJC|B Chain B, Crystal Structure Of L44w Mutant Of Human Acidic
Fibroblast Growth Factor
Length = 146
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--WQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGLF 224
+ M +DGL
Sbjct: 71 LAMDTDGLL 79
>pdb|3FJI|A Chain A, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJI|B Chain B, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJI|C Chain C, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJI|D Chain D, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
Length = 146
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 155 ILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGD 214
+L S G LRI+ G + + + + QLS+E+VG+ Y+ + T G
Sbjct: 18 VLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQL--QLSAESVGEVYIKSTET------GQ 69
Query: 215 TIVMGSDGLF 224
+ M +DGL
Sbjct: 70 YLAMDTDGLL 79
>pdb|3RNR|A Chain A, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
pdb|3RNR|B Chain B, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
Length = 211
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 141 GSATVIVAMLERNGILKVASVGDCGLRIIRKGQIT 175
G+ + A+ R+G L+ ASVGDC + + + G+++
Sbjct: 71 GATXAVAAVNLRDGTLEWASVGDCRVYLFKGGRLS 105
>pdb|1TXO|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A.
pdb|1TXO|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A
Length = 237
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 141 GSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSS---------------SPQEHYF 185
G T + A+L L + +GD ++R G++T + +P+E +
Sbjct: 93 GXGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHS 152
Query: 186 DCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVV 233
L A+ ++ +T E GD ++ SDGL D V D ++
Sbjct: 153 HPQRSLIXRALTGHEVEPTLTXREARAGDRYLLCSDGLSDPVSDETIL 200
>pdb|3FJD|A Chain A, Crystal Structure Of L44fF132W MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJD|B Chain B, Crystal Structure Of L44fF132W MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
Length = 146
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGLF 224
+ M +DGL
Sbjct: 71 LAMDTDGLL 79
>pdb|2HWM|A Chain A, Crystal Structure Of Lys12valCYS117VAL MUTANT OF HUMAN
Acidic Fibroblast Growth Factor At 1.60 Angstrom
Resolution
pdb|2HWM|B Chain B, Crystal Structure Of Lys12valCYS117VAL MUTANT OF HUMAN
Acidic Fibroblast Growth Factor At 1.60 Angstrom
Resolution
Length = 146
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 155 ILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGD 214
+L S G LRI+ G + + + + QLS+E+VG+ Y+ + T G
Sbjct: 18 VLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQL--QLSAESVGEVYIKSTET------GQ 69
Query: 215 TIVMGSDGLF 224
+ M +DGL
Sbjct: 70 YLAMDTDGLL 79
>pdb|1JTC|A Chain A, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
(L44f)
pdb|1JTC|B Chain B, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
(L44f)
pdb|1JTC|C Chain C, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
(L44f)
pdb|1JTC|D Chain D, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
(L44f)
Length = 146
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGLF 224
+ M +DGL
Sbjct: 71 LAMDTDGLL 79
>pdb|2HZ9|A Chain A, Crystal Structure Of Lys12valASN95VALCYS117VAL MUTANT OF
Human Acidic Fibroblast Growth Factor At 1.70 Angstrom
Resolution.
pdb|2HZ9|B Chain B, Crystal Structure Of Lys12valASN95VALCYS117VAL MUTANT OF
Human Acidic Fibroblast Growth Factor At 1.70 Angstrom
Resolution
Length = 146
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 155 ILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGD 214
+L S G LRI+ G + + + + QLS+E+VG+ Y+ + T G
Sbjct: 18 VLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQL--QLSAESVGEVYIKSTET------GQ 69
Query: 215 TIVMGSDGLF 224
+ M +DGL
Sbjct: 70 YLAMDTDGLL 79
>pdb|3FGM|A Chain A, Crystal Structure Of L44fC83TC117VF132W MUTANT OF HUMAN
Acidic Fibroblast Growth Factor
pdb|3FGM|B Chain B, Crystal Structure Of L44fC83TC117VF132W MUTANT OF HUMAN
Acidic Fibroblast Growth Factor
Length = 146
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGLF 224
+ M +DGL
Sbjct: 71 LAMDTDGLL 79
>pdb|1M16|A Chain A, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced With Phe
(L44f), Leu 73 Replaced With Val (L73v), Val 109
Replaced With Leu (V109l) And Cys 117 Replaced With Val
(C117v).
pdb|1M16|B Chain B, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced With Phe
(L44f), Leu 73 Replaced With Val (L73v), Val 109
Replaced With Leu (V109l) And Cys 117 Replaced With Val
(C117v)
Length = 146
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGL 223
+ M +DGL
Sbjct: 71 LAMDTDGL 78
>pdb|1JT7|A Chain A, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
And Leu 73 Replaced By Val And Val 109 Replaced By Leu
(L44fL73VV109L)
pdb|1JT7|B Chain B, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
And Leu 73 Replaced By Val And Val 109 Replaced By Leu
(L44fL73VV109L)
pdb|1JT7|C Chain C, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
And Leu 73 Replaced By Val And Val 109 Replaced By Leu
(L44fL73VV109L)
pdb|1JT7|D Chain D, Human Acidic Fibroblast Growth Factor. 141 Amino Acid Form
With Amino Terminal His Tag And Leu 44 Replaced By Phe
And Leu 73 Replaced By Val And Val 109 Replaced By Leu
(L44fL73VV109L)
Length = 146
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGL 223
+ M +DGL
Sbjct: 71 LAMDTDGL 78
>pdb|1NZK|A Chain A, Crystal Structure Of A Multiple Mutant (L44f, L73v, V109l,
L111i, C117v) Of Human Acidic Fibroblast Growth Factor
pdb|1NZK|B Chain B, Crystal Structure Of A Multiple Mutant (L44f, L73v, V109l,
L111i, C117v) Of Human Acidic Fibroblast Growth Factor
pdb|1NZK|C Chain C, Crystal Structure Of A Multiple Mutant (L44f, L73v, V109l,
L111i, C117v) Of Human Acidic Fibroblast Growth Factor
pdb|1NZK|D Chain D, Crystal Structure Of A Multiple Mutant (L44f, L73v, V109l,
L111i, C117v) Of Human Acidic Fibroblast Growth Factor
Length = 143
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGL 223
+ M +DGL
Sbjct: 71 LAMDTDGL 78
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 136 ATSSVGSATVIVAMLERNGI-LKVASVGDCGLRIIRKG---QITFSSSPQ-----EHYFD 186
AT T VA+L R+GI L VASVGD + RKG ++T +P+ E
Sbjct: 210 ATLLTSGTTATVALL-RDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKK 268
Query: 187 CPYQLSSEAVGQTYLDAMVTTVELI 211
C ++ ++GQ +++ + I
Sbjct: 269 CGGFVAWNSLGQPHVNGRLAMTRSI 293
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 136 ATSSVGSATVIVAMLERNGI-LKVASVGDCGLRIIRKG---QITFSSSPQ-----EHYFD 186
AT T VA+L R+GI L VASVGD + RKG ++T +P+ E
Sbjct: 96 ATLLTSGTTATVALL-RDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKK 154
Query: 187 CPYQLSSEAVGQTYLDAMVTTVELI 211
C ++ ++GQ +++ + I
Sbjct: 155 CGGFVAWNSLGQPHVNGRLAMTRSI 179
>pdb|3O3Q|A Chain A, Crystal Structure Of "l44fM67IL73VA103GDELETION 104-
106F108YV109LL111IC117VR119GDELETION 120-122" Mutant
Form Of Human Acidic Fibroblast Growth Factor
pdb|3O3Q|B Chain B, Crystal Structure Of "l44fM67IL73VA103GDELETION 104-
106F108YV109LL111IC117VR119GDELETION 120-122" Mutant
Form Of Human Acidic Fibroblast Growth Factor
pdb|3O3Q|C Chain C, Crystal Structure Of "l44fM67IL73VA103GDELETION 104-
106F108YV109LL111IC117VR119GDELETION 120-122" Mutant
Form Of Human Acidic Fibroblast Growth Factor
pdb|3O3Q|D Chain D, Crystal Structure Of "l44fM67IL73VA103GDELETION 104-
106F108YV109LL111IC117VR119GDELETION 120-122" Mutant
Form Of Human Acidic Fibroblast Growth Factor
Length = 140
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVEL-IEGD 214
L S G LRI+ G + + + + +QLS+E+VG+ Y+ + T L I+ D
Sbjct: 19 LLYCSNGGHFLRILPDGTVDGTRDRSDQHIQ--FQLSAESVGEVYIKSTETGQYLAIDTD 76
Query: 215 TIVMGS 220
+V GS
Sbjct: 77 GLVYGS 82
>pdb|3FJB|A Chain A, Crystal Structure Of V31i Mutant Of Human Acidic
Fibroblast Growth Factor
pdb|3FJB|B Chain B, Crystal Structure Of V31i Mutant Of Human Acidic
Fibroblast Growth Factor
Length = 146
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 156 LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDT 215
L S G LRI+ G I + + + QLS+E+VG+ Y+ + T G
Sbjct: 19 LLYCSNGGHFLRILPDGTIDGTRDRSDQHIQL--QLSAESVGEVYIKSTET------GQY 70
Query: 216 IVMGSDGLF 224
+ M +DGL
Sbjct: 71 LAMDTDGLL 79
>pdb|1RY7|A Chain A, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
pdb|1RML|A Chain A, Nmr Study Of Acid Fibroblast Growth Factor Bound To 1,3,6-
Naphthalene Trisulphonate, 26 Structures
pdb|3OJ2|A Chain A, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJM|A Chain A, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 155
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 141 GSATVIVAMLERNGI---------LKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQL 191
G T A+ E+ + L S G LRI+ G + + + + QL
Sbjct: 4 GEITTFTALTEKFNLPPGNYKKPKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQL--QL 61
Query: 192 SSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLF 224
S+E+VG+ Y+ + T G + M +DGL
Sbjct: 62 SAESVGEVYIKSTET------GQYLAMDTDGLL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,976,330
Number of Sequences: 62578
Number of extensions: 270110
Number of successful extensions: 620
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 27
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)