Query 025806
Match_columns 248
No_of_seqs 196 out of 1556
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0631 PTC1 Serine/threonine 100.0 2E-37 4.2E-42 264.5 18.0 193 55-247 6-229 (262)
2 KOG1379 Serine/threonine prote 100.0 1.3E-34 2.9E-39 243.7 19.6 191 57-247 76-285 (330)
3 PLN03145 Protein phosphatase 2 100.0 1.9E-32 4.1E-37 242.7 18.5 188 57-247 65-307 (365)
4 PRK14559 putative protein seri 100.0 5E-32 1.1E-36 253.4 19.7 193 55-247 373-612 (645)
5 cd00143 PP2Cc Serine/threonine 100.0 3E-30 6.6E-35 218.1 16.5 186 62-247 5-232 (254)
6 PTZ00224 protein phosphatase 2 100.0 1.2E-29 2.5E-34 225.7 19.8 183 58-247 23-248 (381)
7 smart00332 PP2Cc Serine/threon 100.0 2.4E-29 5.2E-34 213.2 17.4 185 63-247 11-235 (255)
8 PF00481 PP2C: Protein phospha 100.0 8.5E-29 1.8E-33 210.8 8.3 179 67-247 9-239 (254)
9 KOG0698 Serine/threonine prote 99.9 1.3E-25 2.7E-30 197.8 15.2 183 65-247 47-281 (330)
10 KOG0697 Protein phosphatase 1B 99.9 1.3E-25 2.9E-30 185.7 13.4 193 51-247 18-268 (379)
11 PF13672 PP2C_2: Protein phosp 99.9 5E-24 1.1E-28 176.3 11.0 175 62-239 3-194 (212)
12 KOG0700 Protein phosphatase 2C 99.9 1.1E-21 2.4E-26 170.8 13.3 169 70-238 83-355 (390)
13 smart00331 PP2C_SIG Sigma fact 99.9 3.4E-20 7.3E-25 151.3 19.0 170 59-247 6-185 (193)
14 TIGR02865 spore_II_E stage II 99.7 4.3E-16 9.3E-21 150.4 16.9 177 51-247 548-738 (764)
15 KOG1323 Serine/threonine phosp 99.7 1.4E-16 3E-21 135.5 11.7 97 83-180 144-284 (493)
16 KOG0699 Serine/threonine prote 99.6 3.7E-16 8E-21 134.2 8.5 99 140-238 328-461 (542)
17 PF07228 SpoIIE: Stage II spor 99.4 7.6E-12 1.6E-16 101.7 16.5 146 83-246 4-166 (193)
18 COG2208 RsbU Serine phosphatas 98.7 9.6E-07 2.1E-11 79.2 17.0 162 69-247 159-339 (367)
19 KOG0618 Serine/threonine phosp 98.2 6.2E-06 1.3E-10 79.6 7.8 161 83-247 551-749 (1081)
20 KOG0699 Serine/threonine prote 96.9 0.00049 1.1E-08 60.3 1.6 54 55-111 22-78 (542)
21 PRK10693 response regulator of 89.2 9.4 0.0002 33.2 12.1 105 69-174 147-259 (303)
22 PF09436 DUF2016: Domain of un 80.2 0.99 2.2E-05 30.6 1.3 23 211-233 25-47 (72)
23 COG2168 DsrH Uncharacterized c 57.0 8.7 0.00019 27.5 2.0 31 209-239 21-51 (96)
24 TIGR03735 PRTRC_A PRTRC system 41.3 15 0.00032 29.9 1.3 23 211-233 24-46 (192)
25 PRK03982 heat shock protein Ht 34.4 41 0.00089 29.0 3.1 29 210-238 103-131 (288)
26 PRK05457 heat shock protein Ht 34.1 44 0.00095 28.9 3.2 32 207-238 109-140 (284)
27 PF06972 DUF1296: Protein of u 31.6 26 0.00056 22.7 1.0 23 226-248 18-41 (60)
28 COG3411 Ferredoxin [Energy pro 31.6 56 0.0012 21.5 2.6 29 211-239 15-44 (64)
29 PRK02391 heat shock protein Ht 30.7 39 0.00086 29.4 2.4 29 210-238 111-139 (296)
30 TIGR03406 FeS_long_SufT probab 26.3 1.6E+02 0.0034 23.6 4.9 75 163-243 6-89 (174)
31 PRK04897 heat shock protein Ht 25.0 60 0.0013 28.3 2.5 33 206-238 111-143 (298)
32 CHL00152 rpl32 ribosomal prote 23.5 29 0.00063 22.0 0.2 10 1-10 1-10 (53)
33 TIGR00722 ttdA_fumA_fumB hydro 23.5 93 0.002 26.9 3.3 68 89-158 182-252 (273)
34 PF06251 Caps_synth_GfcC: Caps 23.5 1.3E+02 0.0029 24.9 4.2 33 206-238 189-225 (229)
35 TIGR00074 hypC_hupF hydrogenas 23.2 99 0.0021 21.1 2.7 30 209-238 35-64 (76)
36 PRK02870 heat shock protein Ht 21.7 86 0.0019 27.9 2.8 28 211-238 152-179 (336)
37 PF01436 NHL: NHL repeat; Int 21.4 1.4E+02 0.0031 15.6 3.5 19 151-169 10-28 (28)
38 PRK01345 heat shock protein Ht 21.2 87 0.0019 27.6 2.7 28 211-238 103-130 (317)
39 PRK03072 heat shock protein Ht 21.1 78 0.0017 27.4 2.4 28 211-238 106-133 (288)
40 cd03062 TRX_Fd_Sucrase TRX-lik 20.5 82 0.0018 22.4 2.0 28 213-240 53-83 (97)
No 1
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-37 Score=264.48 Aligned_cols=193 Identities=24% Similarity=0.290 Sum_probs=157.4
Q ss_pred EEEeEEEeccCCCCCCCCCceEEEeccCC----eEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhc-----------
Q 025806 55 FCVGTHLIPHPNKVERGGEDAFFVSCYNG----GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED----------- 119 (248)
Q Consensus 55 ~~~~~~~~s~~g~~r~~neD~~~~~~~~~----~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~----------- 119 (248)
+....+..+++|.+|..|||++++..+.. .+|+|||||||+.++++||+++++.|.+.+.+....
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~ 85 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLK 85 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 44556778999999999999999987433 399999999999999999999999999886542111
Q ss_pred ccccccHHHHHHHHHhccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCccccc--------------cc
Q 025806 120 VEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH--------------YF 185 (248)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~--------------~~ 185 (248)
+.+...+..+...........++|||++++++.+++++++||||||+|++|+|++.++|.||.. ..
T Consensus 86 ~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~ 165 (262)
T COG0631 86 EAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEAR 165 (262)
T ss_pred HHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHH
Confidence 1223333344444443456689999999999999999999999999999999999999999942 12
Q ss_pred CCcc--eeeeccCCccccceeeEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhcCCChhhhhc
Q 025806 186 DCPY--QLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGI 247 (248)
Q Consensus 186 ~~p~--~l~~~~~~~~~~~~~~~~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~~~~~~~aa~ 247 (248)
.+|. .+++.+|.....+|++...+++++|++|||||||||.++++++.++|+...+|+++++
T Consensus 166 ~~~~~~~ltralG~~~~~~p~~~~~~~~~~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~ 229 (262)
T COG0631 166 SHPRRNALTRALGDFDLLEPDITELELEPGDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAAD 229 (262)
T ss_pred hCccchhhhhhcCCCcccceeEEEEEcCCCCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHH
Confidence 2454 3677777666699999999999999999999999999999999999998789999875
No 2
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-34 Score=243.72 Aligned_cols=191 Identities=42% Similarity=0.716 Sum_probs=162.7
Q ss_pred EeEEEeccCCCCCCCCCceEEEeccC-CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhccc-ccccHHHHHHHHH
Q 025806 57 VGTHLIPHPNKVERGGEDAFFVSCYN-GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVE-VNYDPQILMRKAH 134 (248)
Q Consensus 57 ~~~~~~s~~g~~r~~neD~~~~~~~~-~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 134 (248)
.+.+..+++-+.-+.+||+||+..+. ..+++||||+|||..-++.+..++++|++.+++..+... ....+..++.+++
T Consensus 76 ~~~~~~~~~~~~~~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay 155 (330)
T KOG1379|consen 76 SKDFIRPHPSKVGKGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAY 155 (330)
T ss_pred cccccCCccccCCCCCCcceeeccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHH
Confidence 34445556666678899999999854 569999999999999999999999999999999888644 3458999999998
Q ss_pred hccCCC-----CCceEEEEEEEe-CCeEEEEEeccccEEEEECCeeEEcCcccccccCCcceeeeccC------Cccccc
Q 025806 135 AATSSV-----GSATVIVAMLER-NGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAV------GQTYLD 202 (248)
Q Consensus 135 ~~~~~~-----~~~tt~~~~l~~-~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~~p~~l~~~~~------~~~~~~ 202 (248)
.+.... |++|+|++++.+ +++|+++|+|||...++|+|++++-|.+|+|.||+||||+.... .+.+..
T Consensus 156 ~~l~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ 235 (330)
T KOG1379|consen 156 AELKSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDS 235 (330)
T ss_pred HHHhhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCccc
Confidence 766555 889999988885 78999999999999999999999999999999999999987642 344556
Q ss_pred eeeEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhcC-----CChhhhhc
Q 025806 203 AMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRF-----IDVSEAGI 247 (248)
Q Consensus 203 ~~~~~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~~-----~~~~~aa~ 247 (248)
.+...+++++||+||++||||||+|.+++|.+++... .++|..|+
T Consensus 236 ad~~~~~v~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~ 285 (330)
T KOG1379|consen 236 ADVTSFDVQKGDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQ 285 (330)
T ss_pred cceEEEeccCCCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHH
Confidence 7899999999999999999999999999999999753 35666654
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=1.9e-32 Score=242.73 Aligned_cols=188 Identities=18% Similarity=0.211 Sum_probs=135.3
Q ss_pred EeEEEeccCCCCCCCCCceEEEecc-------------CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhh------hh
Q 025806 57 VGTHLIPHPNKVERGGEDAFFVSCY-------------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASY------FV 117 (248)
Q Consensus 57 ~~~~~~s~~g~~r~~neD~~~~~~~-------------~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~------~~ 117 (248)
+.+...+++|. |+.|||++++..+ ...||+|||||||+.++++|++.+.+.+.+.... ++
T Consensus 65 ~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al 143 (365)
T PLN03145 65 VRSGAWADIGS-RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVV 143 (365)
T ss_pred eEEEEEccccC-CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 45677889996 9999999876542 1359999999999999999999888877653210 01
Q ss_pred hcccccccHHHHHHHHHhccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCcccccccC-----------
Q 025806 118 EDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFD----------- 186 (248)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~----------- 186 (248)
. .++...+..+.+. ........+|||++++++.+++++++||||||+|++|+|++++||+||.....
T Consensus 144 ~-~af~~~d~~~~~~-~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 144 S-SAFLQTDTAFAEA-CSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred H-HHHHHHhHHHHhh-hccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 0 0111111121111 11112345899999999999999999999999999999999999999964221
Q ss_pred -------Cc-ceeeeccCCc------------cccceeeEEEEcCCCCE-EEEEcCCCCCCCCHHHHHHHhh----cCCC
Q 025806 187 -------CP-YQLSSEAVGQ------------TYLDAMVTTVELIEGDT-IVMGSDGLFDNVFDHEVVSMTT----RFID 241 (248)
Q Consensus 187 -------~p-~~l~~~~~~~------------~~~~~~~~~~~l~~gD~-ill~SDGl~d~l~~~~i~~~v~----~~~~ 241 (248)
.+ ..+++.+|.. ...+|++..+++.++|. ||||||||||+|+++++++++. +..+
T Consensus 222 ~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~ 301 (365)
T PLN03145 222 YVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHND 301 (365)
T ss_pred ceecceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCC
Confidence 11 1256665531 24689999999999886 5689999999999999866654 4458
Q ss_pred hhhhhc
Q 025806 242 VSEAGI 247 (248)
Q Consensus 242 ~~~aa~ 247 (248)
|+++|+
T Consensus 302 p~~aa~ 307 (365)
T PLN03145 302 PVMCSK 307 (365)
T ss_pred HHHHHH
Confidence 888875
No 4
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=5e-32 Score=253.41 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=145.8
Q ss_pred EEEeEEEeccCCCCCCCCCceEEEecc-------------CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhc--
Q 025806 55 FCVGTHLIPHPNKVERGGEDAFFVSCY-------------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-- 119 (248)
Q Consensus 55 ~~~~~~~~s~~g~~r~~neD~~~~~~~-------------~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-- 119 (248)
+.+..+..+++|.+|+.|||++.+... +.++|+|||||||+..|++||+++++.|.+.+.+....
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 456678889999999999999876531 23599999999999999999999999988776543221
Q ss_pred -------ccccccHHHHHHHHHhcc--CCCCCceEEEEEEEeCCeEEEEEeccccEEEE-ECCeeEEcCcccccc-----
Q 025806 120 -------VEVNYDPQILMRKAHAAT--SSVGSATVIVAMLERNGILKVASVGDCGLRII-RKGQITFSSSPQEHY----- 184 (248)
Q Consensus 120 -------~~~~~~~~~~~~~~~~~~--~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~-r~g~~~~lt~dh~~~----- 184 (248)
.++..++..+++...... ...++|||++++++.+++++++||||||+|++ |+|++.+||.||...
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~ 532 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQ 532 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHH
Confidence 112223333333322222 34579999999999999999999999999998 578999999999431
Q ss_pred --------cCCcc--eeeeccCCcc--ccceeeEEEEcCCCCEEEEEcCCCCCC--CCH---HHHHHHhhcCCChhhhhc
Q 025806 185 --------FDCPY--QLSSEAVGQT--YLDAMVTTVELIEGDTIVMGSDGLFDN--VFD---HEVVSMTTRFIDVSEAGI 247 (248)
Q Consensus 185 --------~~~p~--~l~~~~~~~~--~~~~~~~~~~l~~gD~ill~SDGl~d~--l~~---~~i~~~v~~~~~~~~aa~ 247 (248)
..+|. .|++.+|... ..+|++..+.+++||+||||||||||+ +.+ +++..++.+..+++++|+
T Consensus 533 ~Gi~~~~a~~~p~~~~LTrALG~~~~~~l~Pdi~~~~L~~gD~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~ 612 (645)
T PRK14559 533 RGVEPQIAYARPDAYQLTQALGPRDNSAIQPDIQFLEIEEDTLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLN 612 (645)
T ss_pred hCCCHHHHhcCcccceeeeccCCCCCCcccceEEEEEcCCCCEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 12343 4788777653 357999999999999999999999994 554 445667777678888875
No 5
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=3e-30 Score=218.14 Aligned_cols=186 Identities=23% Similarity=0.305 Sum_probs=142.4
Q ss_pred eccCCCCCCCCCceEEEeccC----CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhh--cccccccHHHHHHHHH-
Q 025806 62 IPHPNKVERGGEDAFFVSCYN----GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVE--DVEVNYDPQILMRKAH- 134 (248)
Q Consensus 62 ~s~~g~~r~~neD~~~~~~~~----~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~- 134 (248)
.+..|..|+.|||++++.... ..+|+|||||||+..++++++.+++.+.+.+..... ...+......+++.+.
T Consensus 5 ~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (254)
T cd00143 5 VSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADE 84 (254)
T ss_pred eecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 344555688999999988753 369999999999999999999999988887654321 0111112222222221
Q ss_pred -------hccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCccccccc-----------------CCcc-
Q 025806 135 -------AATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYF-----------------DCPY- 189 (248)
Q Consensus 135 -------~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~-----------------~~p~- 189 (248)
.......++||++++++.+++++++|+||||+|++|++++.++|.||.... ..|.
T Consensus 85 ~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~ 164 (254)
T cd00143 85 EILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGV 164 (254)
T ss_pred HHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCc
Confidence 112346789999999999999999999999999999999999999996541 2233
Q ss_pred -eeeeccCCc-----cccceeeEEEEc-CCCCEEEEEcCCCCCCCCHHHHHHHhhcCC---Chhhhhc
Q 025806 190 -QLSSEAVGQ-----TYLDAMVTTVEL-IEGDTIVMGSDGLFDNVFDHEVVSMTTRFI---DVSEAGI 247 (248)
Q Consensus 190 -~l~~~~~~~-----~~~~~~~~~~~l-~~gD~ill~SDGl~d~l~~~~i~~~v~~~~---~~~~aa~ 247 (248)
.+++.+|.. ...+|++...++ +++|+||||||||||++++++|.+++.... +++++|+
T Consensus 165 ~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~ 232 (254)
T cd00143 165 LAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQ 232 (254)
T ss_pred eeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHH
Confidence 356666655 367889999999 999999999999999999999999999876 7888875
No 6
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.97 E-value=1.2e-29 Score=225.73 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=122.6
Q ss_pred eEEEeccCCCCCCCCCceEEEecc-CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHh-
Q 025806 58 GTHLIPHPNKVERGGEDAFFVSCY-NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA- 135 (248)
Q Consensus 58 ~~~~~s~~g~~r~~neD~~~~~~~-~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (248)
.+...+.+|. |+.|||++++... +..+|+|||||||..+ |+++++.|.+.+.+.... ........++..+..
T Consensus 23 ~~g~~s~~G~-R~~nED~~~v~~~~~~~lfgVfDGHgG~~~----S~~~~~~l~~~l~~~~~~-~~~~~l~~a~~~~d~~ 96 (381)
T PTZ00224 23 RCASACVNGY-RESMEDAHLLYLTDDWGFFGVFDGHVNDEC----SQYLARAWPQALEKEPEP-MTDERMEELCLEIDEE 96 (381)
T ss_pred EEEEEeCCCC-CCCCCCeeEeccCCCceEEEEEeCCCcHHH----HHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHH
Confidence 3445577898 9999999876543 3469999999997654 444444444433221100 001111222222211
Q ss_pred --ccCCCCCceEEEEEEE-eCCeEEEEEeccccEEEEECCeeEEcCcccccccC-------------Ccc------eeee
Q 025806 136 --ATSSVGSATVIVAMLE-RNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFD-------------CPY------QLSS 193 (248)
Q Consensus 136 --~~~~~~~~tt~~~~l~-~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~-------------~p~------~l~~ 193 (248)
... ..+|||++++++ .+++++++||||||+|++|+|++.+||+||..... .+. .+++
T Consensus 97 i~~~~-~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTR 175 (381)
T PTZ00224 97 WMDSG-REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSR 175 (381)
T ss_pred HHhcc-cCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeec
Confidence 111 234666666555 46799999999999999999999999999954221 122 3555
Q ss_pred ccCCcc--------------ccceeeEEEEcCCCCEEEEEcCCCCC-CCCHHHHHHHhhc----CCChhhhhc
Q 025806 194 EAVGQT--------------YLDAMVTTVELIEGDTIVMGSDGLFD-NVFDHEVVSMTTR----FIDVSEAGI 247 (248)
Q Consensus 194 ~~~~~~--------------~~~~~~~~~~l~~gD~ill~SDGl~d-~l~~~~i~~~v~~----~~~~~~aa~ 247 (248)
.+|... ..+|++..++++++|+|||||||||| +++++++.+++.+ ..+++++|+
T Consensus 176 alGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~ 248 (381)
T PTZ00224 176 AFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSNDFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAG 248 (381)
T ss_pred ccCCcccccccccccccCcceeeeEEEEEECCCCCEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 555421 15799999999999999999999999 7999999999873 458888764
No 7
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=2.4e-29 Score=213.19 Aligned_cols=185 Identities=23% Similarity=0.261 Sum_probs=132.4
Q ss_pred ccCCCCCCCCCceEEEecc---CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhc-ccccccHHHHHHHHHh---
Q 025806 63 PHPNKVERGGEDAFFVSCY---NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-VEVNYDPQILMRKAHA--- 135 (248)
Q Consensus 63 s~~g~~r~~neD~~~~~~~---~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 135 (248)
++.|..|..|||++++... +..+|+|||||||...+.++++.+.+.+.+........ .........++..+..
T Consensus 11 ~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (255)
T smart00332 11 SSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEIL 90 (255)
T ss_pred ecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 4566679999999998874 34599999999966555555555554444332211100 0011112222222211
Q ss_pred -----ccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCccccc-------------------ccCCccee
Q 025806 136 -----ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEH-------------------YFDCPYQL 191 (248)
Q Consensus 136 -----~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~-------------------~~~~p~~l 191 (248)
......++||++++++.+++++++|+||||+|++|++++.++|.||.. ....+..+
T Consensus 91 ~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 170 (255)
T smart00332 91 EELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLAL 170 (255)
T ss_pred HhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEec
Confidence 112357899999999999999999999999999999999999999976 33333456
Q ss_pred eeccCCcc-----ccceeeEEEEc-CCCCEEEEEcCCCCCCCCHHHHHHHhhcCC---Chhhhhc
Q 025806 192 SSEAVGQT-----YLDAMVTTVEL-IEGDTIVMGSDGLFDNVFDHEVVSMTTRFI---DVSEAGI 247 (248)
Q Consensus 192 ~~~~~~~~-----~~~~~~~~~~l-~~gD~ill~SDGl~d~l~~~~i~~~v~~~~---~~~~aa~ 247 (248)
++.+|... ..+|++...++ +++|+||||||||||+++++++.+++.+.. +++++|+
T Consensus 171 t~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~ 235 (255)
T smart00332 171 SRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAK 235 (255)
T ss_pred ccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 77666553 36788888896 999999999999999999999999998865 5777765
No 8
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.95 E-value=8.5e-29 Score=210.76 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=122.1
Q ss_pred CCCCCCCceEEEecc--------CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHHH------
Q 025806 67 KVERGGEDAFFVSCY--------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRK------ 132 (248)
Q Consensus 67 ~~r~~neD~~~~~~~--------~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------ 132 (248)
..|+.|||.+++... ...+|+|||||||..++.+++..+.+.+.+........ .+.......+..
T Consensus 9 g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~-~~~~al~~a~~~~~~~~~ 87 (254)
T PF00481_consen 9 GVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGN-DIEEALRQAFLAFTDESL 87 (254)
T ss_dssp CTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhccccccc-chhhcccceeeecccccc
Confidence 359999999988762 23499999999998888888887776665554322210 111111111111
Q ss_pred ---HHhccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeE-EcCcccccccC--------------------Cc
Q 025806 133 ---AHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQIT-FSSSPQEHYFD--------------------CP 188 (248)
Q Consensus 133 ---~~~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~-~lt~dh~~~~~--------------------~p 188 (248)
.... ....+|||++++++.+++++++||||||+|+++.+... +||.||.+... ..
T Consensus 88 ~~~~~~~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~ 166 (254)
T PF00481_consen 88 YSDSENN-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGV 166 (254)
T ss_dssp HHHHHHH-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTT
T ss_pred ccccccc-ccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhc
Confidence 1111 45789999999999999999999999999999999888 99999953211 11
Q ss_pred ceeeeccCCcc---------ccceeeEEEEcCCCC-EEEEEcCCCCCCCCHHHHHHHhhcCCC----hhhhhc
Q 025806 189 YQLSSEAVGQT---------YLDAMVTTVELIEGD-TIVMGSDGLFDNVFDHEVVSMTTRFID----VSEAGI 247 (248)
Q Consensus 189 ~~l~~~~~~~~---------~~~~~~~~~~l~~gD-~ill~SDGl~d~l~~~~i~~~v~~~~~----~~~aa~ 247 (248)
..+++.+|... .++|++..+++.++| +||||||||||+++++++++++.+..+ |+++|+
T Consensus 167 l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~ 239 (254)
T PF00481_consen 167 LAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAE 239 (254)
T ss_dssp BSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred cccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 12445444332 256999999999986 799999999999999999999988643 788775
No 9
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-25 Score=197.78 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=119.8
Q ss_pred CCCCCCCCCceEEEecc----------CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHH-HH
Q 025806 65 PNKVERGGEDAFFVSCY----------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMR-KA 133 (248)
Q Consensus 65 ~g~~r~~neD~~~~~~~----------~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 133 (248)
.+..|..|||.+..... ...+|||||||||..+++++.+.+...+.+.............+..+.+. ..
T Consensus 47 ~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~ 126 (330)
T KOG0698|consen 47 IRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKT 126 (330)
T ss_pred cCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 34448889999876654 13599999999988777777766666666544322110001111111111 01
Q ss_pred ----Hh-ccCCCCCceEEEEEEE-eCCeEEEEEeccccEEEEECC-eeEEcCcccccccC---------------Cc--c
Q 025806 134 ----HA-ATSSVGSATVIVAMLE-RNGILKVASVGDCGLRIIRKG-QITFSSSPQEHYFD---------------CP--Y 189 (248)
Q Consensus 134 ----~~-~~~~~~~~tt~~~~l~-~~~~l~~a~vGDsr~~l~r~g-~~~~lt~dh~~~~~---------------~p--~ 189 (248)
.. ......+|||++++++ .+++|+++|+||||++|++.| +.++||.||++... .. .
T Consensus 127 D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~ 206 (330)
T KOG0698|consen 127 DSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVW 206 (330)
T ss_pred HHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcc
Confidence 00 1112344555555455 455999999999999999865 79999999965332 11 1
Q ss_pred e------eeeccCCc------cccceeeEEEEcCC-CCEEEEEcCCCCCCCCHHHHHHHhhc----CCChhhhhc
Q 025806 190 Q------LSSEAVGQ------TYLDAMVTTVELIE-GDTIVMGSDGLFDNVFDHEVVSMTTR----FIDVSEAGI 247 (248)
Q Consensus 190 ~------l~~~~~~~------~~~~~~~~~~~l~~-gD~ill~SDGl~d~l~~~~i~~~v~~----~~~~~~aa~ 247 (248)
+ +++.+|.. ...+|++....+.+ .++|||+||||||+++++|++++|+. ..++..+++
T Consensus 207 Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~ 281 (330)
T KOG0698|consen 207 RVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAK 281 (330)
T ss_pred eEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHH
Confidence 1 33333322 24689999889887 57999999999999999999999998 457776653
No 10
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-25 Score=185.73 Aligned_cols=193 Identities=18% Similarity=0.196 Sum_probs=134.2
Q ss_pred CcceEEEeEEEeccCCCCCCCCCceEEEecc------CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhh---cc-
Q 025806 51 PELSFCVGTHLIPHPNKVERGGEDAFFVSCY------NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVE---DV- 120 (248)
Q Consensus 51 ~~~~~~~~~~~~s~~g~~r~~neD~~~~~~~------~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~---~~- 120 (248)
....+.+|..++ +|+ |-.|||++....- +..||+|||||.|+..+.+++..+-+.+...- .+.. .+
T Consensus 18 ~GNglryg~SSM--QGW-R~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse-~F~~~~k~gs 93 (379)
T KOG0697|consen 18 EGNGLRYGVSSM--QGW-RVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSE-EFRGMTKNGS 93 (379)
T ss_pred cCCceeeeeccc--cch-hhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhH-HHhhhccCCc
Confidence 334566666544 788 9999999865431 35599999999988888877776666655431 1111 11
Q ss_pred ---------cccccHHHHHHHHHh-ccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCcccccccC----
Q 025806 121 ---------EVNYDPQILMRKAHA-ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFD---- 186 (248)
Q Consensus 121 ---------~~~~~~~~~~~~~~~-~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~---- 186 (248)
.......+.++.... ......+|+|.+++++...++|++|+||||++++|+|+++.-|.||++...
T Consensus 94 v~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~Eke 173 (379)
T KOG0697|consen 94 VENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKE 173 (379)
T ss_pred HHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHH
Confidence 011222233333222 122345899999999999999999999999999999999999999977553
Q ss_pred ---------------CcceeeeccCCcc--------------ccceeeEEEEc-CCCCEEEEEcCCCCCCCCHHHHHHHh
Q 025806 187 ---------------CPYQLSSEAVGQT--------------YLDAMVTTVEL-IEGDTIVMGSDGLFDNVFDHEVVSMT 236 (248)
Q Consensus 187 ---------------~p~~l~~~~~~~~--------------~~~~~~~~~~l-~~gD~ill~SDGl~d~l~~~~i~~~v 236 (248)
....+++++|... .++|++....- +.+|||||+||||||+|+++|+.++|
T Consensus 174 RIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv 253 (379)
T KOG0697|consen 174 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFV 253 (379)
T ss_pred HHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHH
Confidence 1112344444321 46888877665 45689999999999999999999999
Q ss_pred hc----CCChhhhhc
Q 025806 237 TR----FIDVSEAGI 247 (248)
Q Consensus 237 ~~----~~~~~~aa~ 247 (248)
+. ..|+++.|+
T Consensus 254 ~sRl~Vt~dL~~vcn 268 (379)
T KOG0697|consen 254 KSRLEVTSDLEEVCN 268 (379)
T ss_pred HhhheecccHHHHHH
Confidence 86 357777664
No 11
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.91 E-value=5e-24 Score=176.35 Aligned_cols=175 Identities=20% Similarity=0.252 Sum_probs=108.4
Q ss_pred eccCCCCCCCCCceEEEeccC-CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhccccc---ccHHHHHHHHH---
Q 025806 62 IPHPNKVERGGEDAFFVSCYN-GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVN---YDPQILMRKAH--- 134 (248)
Q Consensus 62 ~s~~g~~r~~neD~~~~~~~~-~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~--- 134 (248)
.++.|+ +..|||++.+...+ ..+++||||+|+...++.+|+++++.+.+++.......... .....+.+...
T Consensus 3 ~sh~~~-~~~nqD~~~~~~~~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (212)
T PF13672_consen 3 RSHRGR-GAPNQDAFGIRTDDDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSIV 81 (212)
T ss_dssp ----TT-SSS--EEEEEE-TCCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCCCCCEEeeeCCCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 356675 89999999877654 45889999999999999999999999998887655432111 11122221111
Q ss_pred --------hccCCCCCceEEEEEEEeCCeEEEEEeccccEEE-EECCeeEEcCcccccccCCcceeeeccCCccccceee
Q 025806 135 --------AATSSVGSATVIVAMLERNGILKVASVGDCGLRI-IRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMV 205 (248)
Q Consensus 135 --------~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l-~r~g~~~~lt~dh~~~~~~p~~l~~~~~~~~~~~~~~ 205 (248)
........+||++++++.+++++++||||||+|+ .++|++..++.+|...+. .++......+.....++
T Consensus 82 ~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 159 (212)
T PF13672_consen 82 RAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--NQTRSLTGDDPEPDVQY 159 (212)
T ss_dssp ----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH--HCTTSCCHHCCCTETEE
T ss_pred hhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh--hhhhccCccccccCCeE
Confidence 2345577899999999999999999999999965 579999999998853331 11111111123344577
Q ss_pred EEEEcCCCCEEEEEcCCCCCCCCHHH-HHHHhhcC
Q 025806 206 TTVELIEGDTIVMGSDGLFDNVFDHE-VVSMTTRF 239 (248)
Q Consensus 206 ~~~~l~~gD~ill~SDGl~d~l~~~~-i~~~v~~~ 239 (248)
..++++++|.|+|||||||+.+.+.+ +..++.+.
T Consensus 160 ~~~~~~~~d~ilL~SDG~~~~l~~~~~~~~~l~~~ 194 (212)
T PF13672_consen 160 GSIPLEEGDVILLCSDGVWDNLRSYEDLEQFLKDL 194 (212)
T ss_dssp EEEE--TT-EEEEE-HHHHTTS-HHHHHHHH----
T ss_pred EEEEcCCCCEEEEECcCccccCCCHHHHHHHhhhc
Confidence 88889999999999999999998655 66777653
No 12
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-21 Score=170.84 Aligned_cols=169 Identities=20% Similarity=0.164 Sum_probs=112.9
Q ss_pred CCCCceEEEecc---CCeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcc--------------------------
Q 025806 70 RGGEDAFFVSCY---NGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDV-------------------------- 120 (248)
Q Consensus 70 ~~neD~~~~~~~---~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~-------------------------- 120 (248)
+..||.+.+... +..|+||+|||||.+++++.+..+...+...+.......
T Consensus 83 ~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 83 KAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred CcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 456777644332 234999999999998888877766665553332110000
Q ss_pred -cccccHHHHHHHHHhc----------------cCCCCCceEEEEEEEeCCeEEEEEeccccEEEEE---CC---eeEEc
Q 025806 121 -EVNYDPQILMRKAHAA----------------TSSVGSATVIVAMLERNGILKVASVGDCGLRIIR---KG---QITFS 177 (248)
Q Consensus 121 -~~~~~~~~~~~~~~~~----------------~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r---~g---~~~~l 177 (248)
.......+.+.+++.. ....-+|+||++.++.++.|||||+|||||+|.+ +| ..++|
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 0022233333333221 2335688999999999999999999999999965 34 36799
Q ss_pred Cccccccc---------CCcc----------------eeeeccCCc--------------------------cccceeeE
Q 025806 178 SSPQEHYF---------DCPY----------------QLSSEAVGQ--------------------------TYLDAMVT 206 (248)
Q Consensus 178 t~dh~~~~---------~~p~----------------~l~~~~~~~--------------------------~~~~~~~~ 206 (248)
|.||.... .||. +.+++.|.. ..++|.+.
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEE
Confidence 99983211 1221 123333221 14689999
Q ss_pred EEEcCCCC-EEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 207 TVELIEGD-TIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 207 ~~~l~~gD-~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
..+|.|.| |+||+||||||+|+++|++++|-.
T Consensus 323 ~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~ 355 (390)
T KOG0700|consen 323 HHKLTPNDKFLILASDGLWEYLSNEEAVSLVHE 355 (390)
T ss_pred EEEcCCCCeEEEEeccchhhhcChHHHHHHHHH
Confidence 99999988 588899999999999999999987
No 13
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.86 E-value=3.4e-20 Score=151.26 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=118.3
Q ss_pred EEEeccCCCCCCCCCceEEEeccC--CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHh-
Q 025806 59 THLIPHPNKVERGGEDAFFVSCYN--GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA- 135 (248)
Q Consensus 59 ~~~~s~~g~~r~~neD~~~~~~~~--~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 135 (248)
.+.+..|+ ...++|.|.+...+ ..+++|+||+|+...+..++..+...+.+... .. ..+.++++...+
T Consensus 6 ~~~~~~p~--~~~~GD~~~~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~----~~---~~~~~~l~~~n~~ 76 (193)
T smart00331 6 IAQYYEDA--TQVGGDFYDVVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLS----EG---ISLSQILERLNRA 76 (193)
T ss_pred EEEEEcch--HhcCccEEEEEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhh----cC---CCHHHHHHHHHHH
Confidence 34455666 68899999777654 35999999999766666666555555444332 21 223444433322
Q ss_pred --ccCCCCCceEEEEEEE--eCCeEEEEEeccccEEEEE-CCeeEEcCcccccccCCcceeeeccCCccccceeeEEEEc
Q 025806 136 --ATSSVGSATVIVAMLE--RNGILKVASVGDCGLRIIR-KGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVEL 210 (248)
Q Consensus 136 --~~~~~~~~tt~~~~l~--~~~~l~~a~vGDsr~~l~r-~g~~~~lt~dh~~~~~~p~~l~~~~~~~~~~~~~~~~~~l 210 (248)
.......++|++++.+ .+++++++|+||+++++++ ++.....+.+.. ..+|.....+++...+++
T Consensus 77 l~~~~~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~----------~~lG~~~~~~~~~~~~~l 146 (193)
T smart00331 77 IYENGEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLG----------APLGLEPDVEVDVRELTL 146 (193)
T ss_pred HHhcCCCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCC----------ceeeeCCCCcceeEEEee
Confidence 2234557888888776 5789999999999999999 666555554421 122333344577889999
Q ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHhhcCC--Chhhhhc
Q 025806 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTRFI--DVSEAGI 247 (248)
Q Consensus 211 ~~gD~ill~SDGl~d~l~~~~i~~~v~~~~--~~~~aa~ 247 (248)
++||+|+|+||||||.++++++.+++.+.. ++++.++
T Consensus 147 ~~gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~ 185 (193)
T smart00331 147 EPGDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQ 185 (193)
T ss_pred CCCCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999999999998863 5777654
No 14
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.70 E-value=4.3e-16 Score=150.45 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=123.5
Q ss_pred CcceEEEeEEEeccCCCCCCCCCceEEEeccCC--eEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHH
Q 025806 51 PELSFCVGTHLIPHPNKVERGGEDAFFVSCYNG--GVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQI 128 (248)
Q Consensus 51 ~~~~~~~~~~~~s~~g~~r~~neD~~~~~~~~~--~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~ 128 (248)
+++.+.+|.+..+.+| +..++|.|.+.+.+. ..++|+||+|+...+..++..+.+.+.+.. ..+ ..+..
T Consensus 548 ~~~~~~~g~a~~~k~g--~~vsGD~y~~~~l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~----~~g---~~~~~ 618 (764)
T TIGR02865 548 PKYHVSTGVARAAKDG--ELVSGDSYSFGKLSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFL----ESG---FDREV 618 (764)
T ss_pred CceeehhhHHHhcCCC--CcccCceEEEEEECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHH----HcC---CCHHH
Confidence 5567778888888888 899999998876443 378999999966666666555555444332 221 12333
Q ss_pred HHHHHHh---ccCCCCCceEEEEEEEe--CCeEEEEEeccccEEEEECCeeEEcCcccccccCCcceeeeccCCccccce
Q 025806 129 LMRKAHA---ATSSVGSATVIVAMLER--NGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDA 203 (248)
Q Consensus 129 ~~~~~~~---~~~~~~~~tt~~~~l~~--~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~~p~~l~~~~~~~~~~~~ 203 (248)
+++.... ......+.+|+..++++ ++++.++|+||++.|+.|++++..++..+- | +|.....++
T Consensus 619 ai~~lN~~L~~~~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~l-----P------lGil~~~~~ 687 (764)
T TIGR02865 619 AIKTVNSILSLRSTDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNL-----P------IGILDEVDV 687 (764)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCc-----e------eEeccCCcc
Confidence 3333221 22334567888777774 689999999999999999999888875422 1 122233457
Q ss_pred eeEEEEcCCCCEEEEEcCCCCCCCCHHH-----HHHHhhcC--CChhhhhc
Q 025806 204 MVTTVELIEGDTIVMGSDGLFDNVFDHE-----VVSMTTRF--IDVSEAGI 247 (248)
Q Consensus 204 ~~~~~~l~~gD~ill~SDGl~d~l~~~~-----i~~~v~~~--~~~~~aa~ 247 (248)
+..+.++++||+++|+|||+||..++.+ +.+++.+. .+|++.++
T Consensus 688 ~~~~~~L~~GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~ 738 (764)
T TIGR02865 688 ELVRKKLKNGDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAE 738 (764)
T ss_pred ceEEEEeCCCCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHH
Confidence 7788999999999999999999886533 77788653 47888764
No 15
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.70 E-value=1.4e-16 Score=135.47 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhc-------------------------------cccc--ccHHHH
Q 025806 83 GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-------------------------------VEVN--YDPQIL 129 (248)
Q Consensus 83 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~-------------------------------~~~~--~~~~~~ 129 (248)
..+|.+||||.|...+-+|++++.+.+.+.+.+.+.. ..+. ....-.
T Consensus 144 ~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGA 223 (493)
T KOG1323|consen 144 GALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGA 223 (493)
T ss_pred ceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHHH
Confidence 4599999999999998999998888887776533221 0000 000011
Q ss_pred HHHHH-----------hccCCCCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCcc
Q 025806 130 MRKAH-----------AATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSP 180 (248)
Q Consensus 130 ~~~~~-----------~~~~~~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~d 180 (248)
++.++ ......| |||+++++.--++||++|.||||++++|+++++.++.+
T Consensus 224 lEsAFqemDeqiarer~~~~~~G-GCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~e 284 (493)
T KOG1323|consen 224 LESAFQEMDEQIARERQVWRLPG-GCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKE 284 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC-CceEEEeeeeccceEEccCCCceEEEEecCCeeecccc
Confidence 22221 1123344 45555555555789999999999999999999998854
No 16
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.65 E-value=3.7e-16 Score=134.18 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=81.4
Q ss_pred CCCceEEEEEEEeCCeEEEEEeccccEEEEECCeeEEcCcccccccC--------------------CcceeeeccCCcc
Q 025806 140 VGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFD--------------------CPYQLSSEAVGQT 199 (248)
Q Consensus 140 ~~~~tt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~--------------------~p~~l~~~~~~~~ 199 (248)
..+|||.+++|+.+.+|+++|.||||+++.|+|+.+-++.||++.-. ....|++++|...
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHa 407 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHA 407 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhh
Confidence 56899999999999999999999999999999999999999965322 2223555544331
Q ss_pred --------------ccceeeEEEEcCCC-CEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 200 --------------YLDAMVTTVELIEG-DTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 200 --------------~~~~~~~~~~l~~g-D~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
..-|++....|.|. +|+|++|||||++|+.++++.+|+.
T Consensus 408 YK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~ 461 (542)
T KOG0699|consen 408 YKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRD 461 (542)
T ss_pred hhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHH
Confidence 24589999999886 5899999999999999999999874
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.44 E-value=7.6e-12 Score=101.67 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=91.7
Q ss_pred CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHh----ccCCCCCceEEEEEEE--eCCeE
Q 025806 83 GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHA----ATSSVGSATVIVAMLE--RNGIL 156 (248)
Q Consensus 83 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~tt~~~~l~--~~~~l 156 (248)
..+++|+|+.| ++..|.+++..+...++....... .+.++++...+ .....+..+|++.+.+ .++++
T Consensus 4 ~~~~~v~D~~G----hG~~aa~~~~~~~~~~~~~~~~~~---~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 4 RYFIIVGDVSG----HGVSAALLSAALASAIRELLDEGL---DPEELLEALNRRLYRDLKGDNRYATACYAIIDPETGTL 76 (193)
T ss_dssp EEEEEEEEESS----SSHHHHHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEETTTTEE
T ss_pred EEEEEEEEecC----CCHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHhhhccccceEEEEEecccceEE
Confidence 35899999999 555566666666666655543321 15555544432 2233335556655554 46789
Q ss_pred EEEEeccccEEEEECC--eeEEcCcccccccCCcceeeeccCCccccceeeEEEEcCCCCEEEEEcCCCCCCCCHH----
Q 025806 157 KVASVGDCGLRIIRKG--QITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDH---- 230 (248)
Q Consensus 157 ~~a~vGDsr~~l~r~g--~~~~lt~dh~~~~~~p~~l~~~~~~~~~~~~~~~~~~l~~gD~ill~SDGl~d~l~~~---- 230 (248)
+++|+|+++++++|++ ....+...... +|.....++...++++++||+|+|+||||+|..+.+
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~~~~-----------lG~~~~~~~~~~~~~l~~gd~l~l~TDGl~e~~~~~~~~~ 145 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESEGPP-----------LGIFEDIDYQEQEIQLEPGDRLLLYTDGLFEALNEDGEFF 145 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCSSBB-----------CSSSCTTCEEEEEEE--TTEEEEEECHHHCTTTCHHCHHC
T ss_pred EEeCCCCCCEEEEeccccceeecccCccc-----------eeeeccccccceEEEeccccEEEEeCCChhhccCCccchh
Confidence 9999999999999983 34444322111 233344667788999999999999999999998544
Q ss_pred ---HHHHHhhc--CCChhhhh
Q 025806 231 ---EVVSMTTR--FIDVSEAG 246 (248)
Q Consensus 231 ---~i~~~v~~--~~~~~~aa 246 (248)
++.+++.+ ..++++.+
T Consensus 146 ~~~~~~~~l~~~~~~~~~~~~ 166 (193)
T PF07228_consen 146 GEERLLELLDENRGLSPQEII 166 (193)
T ss_dssp CCHHHHHHHHCHTTS-HHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHH
Confidence 44566663 24666654
No 18
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.72 E-value=9.6e-07 Score=79.19 Aligned_cols=162 Identities=13% Similarity=0.046 Sum_probs=102.0
Q ss_pred CCCCCceEEEeccC--CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHHHH---HhccCCCCCc
Q 025806 69 ERGGEDAFFVSCYN--GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKA---HAATSSVGSA 143 (248)
Q Consensus 69 r~~neD~~~~~~~~--~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 143 (248)
+..+.|.|.+...+ .-.++|.|..| .+..|.+........++ .+.. .....+..+++.. ..........
T Consensus 159 ~~vGGD~yd~~~~~~~~~~i~I~DvsG----~Gv~aal~m~~~~~~~~-~~~~-~~~~~p~~~l~~~n~~~~~~~~~~~f 232 (367)
T COG2208 159 SEVGGDYYDFIQLGEKRLRIGIGDVSG----KGVPAALLMLMPKLALR-LLLE-SGPLDPADVLETLNRVLKQNLEEDMF 232 (367)
T ss_pred HHcCCceEEEEEECCcEEEEEEEeccC----CCHHHHHHHHHHHHHHH-Hhhh-cccCCHHHHHHHHHHHHHhcccCCcE
Confidence 34889999777654 33899999988 44544444222222222 2211 1134455555443 3333333366
Q ss_pred eEEEEEEEe--CCeEEEEEeccccEEEEECCe---eEEcCcccccccCCcceeeeccCCccccceeeEEEEcCCCCEEEE
Q 025806 144 TVIVAMLER--NGILKVASVGDCGLRIIRKGQ---ITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVM 218 (248)
Q Consensus 144 tt~~~~l~~--~~~l~~a~vGDsr~~l~r~g~---~~~lt~dh~~~~~~p~~l~~~~~~~~~~~~~~~~~~l~~gD~ill 218 (248)
+|+...+++ .+.+.++++|.-.+++.+.++ +..++.. +...|..+...+.+....+++||.+++
T Consensus 233 ~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~~-----------g~piG~~~~~~~~~~~~~l~~gd~lvl 301 (367)
T COG2208 233 VTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTAL-----------GLPIGLLPDYQYEVASLQLEPGDLLVL 301 (367)
T ss_pred EEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccCC-----------CceeeecCCccchheeEEecCCCEEEE
Confidence 666666553 689999999999999999654 3444422 112234445667788899999999999
Q ss_pred EcCCCCC-------CCCHHHHHHHhhc--CCChhhhhc
Q 025806 219 GSDGLFD-------NVFDHEVVSMTTR--FIDVSEAGI 247 (248)
Q Consensus 219 ~SDGl~d-------~l~~~~i~~~v~~--~~~~~~aa~ 247 (248)
.|||+.| .+..+...+.+.. ..+++|+++
T Consensus 302 ~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 339 (367)
T COG2208 302 YTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILE 339 (367)
T ss_pred EcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999 4566677777763 246777653
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.15 E-value=6.2e-06 Score=79.65 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=95.2
Q ss_pred CeEEEEEcCCCCCCcccchHHHHHHHHHHHHhhhhhccc-ccccHHHHHHHHHhcc--CCCCCceEEEEEEEe-------
Q 025806 83 GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVE-VNYDPQILMRKAHAAT--SSVGSATVIVAMLER------- 152 (248)
Q Consensus 83 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~tt~~~~l~~------- 152 (248)
+.+|+.+||-+.. .....+...+..++.+.++... -....+..+...+++. ....-|..++.+.+.
T Consensus 551 ~a~~g~~dgs~n~----~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~a 626 (1081)
T KOG0618|consen 551 QATFGCFDGSRNS----RVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPA 626 (1081)
T ss_pred cceEEEEcCCCch----hHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhhhhhhccccchhhheeecccccCcc
Confidence 4599999996643 3344444444444433332210 0111222222222211 111222233333332
Q ss_pred -CCeEEEEEeccccEEEEECCeeEEcCccccc---------------ccCCccee-----eeccCCc------cccceee
Q 025806 153 -NGILKVASVGDCGLRIIRKGQITFSSSPQEH---------------YFDCPYQL-----SSEAVGQ------TYLDAMV 205 (248)
Q Consensus 153 -~~~l~~a~vGDsr~~l~r~g~~~~lt~dh~~---------------~~~~p~~l-----~~~~~~~------~~~~~~~ 205 (248)
..++.+||+|+|.++++++|+-.+.|+..-. ..+.-..+ +++..|. ..+.|.+
T Consensus 627 sS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv 706 (1081)
T KOG0618|consen 627 SSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHV 706 (1081)
T ss_pred cchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccccccccCCCce
Confidence 2489999999999999999997776643211 11111111 1222222 2467889
Q ss_pred EEEEcCCC-CEEEEEcCCCCCCCCHHHHHHHhhcCCChhhhhc
Q 025806 206 TTVELIEG-DTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAGI 247 (248)
Q Consensus 206 ~~~~l~~g-D~ill~SDGl~d~l~~~~i~~~v~~~~~~~~aa~ 247 (248)
..+.|.+. +++|+++-+||++|+-+++++.+++..||--||+
T Consensus 707 ~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAk 749 (1081)
T KOG0618|consen 707 SVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAK 749 (1081)
T ss_pred eeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHH
Confidence 99999764 6899999999999999999999998788888775
No 20
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=96.85 E-value=0.00049 Score=60.30 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=40.7
Q ss_pred EEEeEEEeccCCCCCCCCCceEEEecc---CCeEEEEEcCCCCCCcccchHHHHHHHHHH
Q 025806 55 FCVGTHLIPHPNKVERGGEDAFFVSCY---NGGVIAVADGVSGWAEQNVDPSLFSRELMA 111 (248)
Q Consensus 55 ~~~~~~~~s~~g~~r~~neD~~~~~~~---~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~ 111 (248)
+.+|..+ -+|+ |-.+||++-...+ +..+|+|+|||||.+.+.|.+..+...|.+
T Consensus 22 L~yg~s~--MQGW-RvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~ 78 (542)
T KOG0699|consen 22 LSYGCST--MQGW-RVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKE 78 (542)
T ss_pred chhchhh--hhcc-ccchhhhhcccccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHh
Confidence 4555544 4788 9999999744432 456999999999999998888888776654
No 21
>PRK10693 response regulator of RpoS; Provisional
Probab=89.21 E-value=9.4 Score=33.19 Aligned_cols=105 Identities=11% Similarity=0.031 Sum_probs=54.3
Q ss_pred CCCCCceEEEeccC--CeEEEEEcCCCCCCcccchHHHHHHHHHH-HHhhhh-hcccccccHHHHHHHHHhc---cCCCC
Q 025806 69 ERGGEDAFFVSCYN--GGVIAVADGVSGWAEQNVDPSLFSRELMA-NASYFV-EDVEVNYDPQILMRKAHAA---TSSVG 141 (248)
Q Consensus 69 r~~neD~~~~~~~~--~~~~~V~DG~Gg~~~~~~as~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~ 141 (248)
...++|.+.+...+ .-.|.++|=.| +..++..+.+....+.. .+.... .+......+.++++..... ....+
T Consensus 147 ~~~~GD~~d~~~l~~~~~~~~~~DvsG-hg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~ 225 (303)
T PRK10693 147 ADKPGLVLDIAALSDNDLAFYCLDVTR-AGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG 225 (303)
T ss_pred CCCCccEEeeeecCCCcEEEEEEecCC-CCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc
Confidence 34578998776643 33677888433 22233334444444333 333221 1111123466666554332 22223
Q ss_pred CceEEEEEEE-eCCeEEEEEeccccEEEEECCee
Q 025806 142 SATVIVAMLE-RNGILKVASVGDCGLRIIRKGQI 174 (248)
Q Consensus 142 ~~tt~~~~l~-~~~~l~~a~vGDsr~~l~r~g~~ 174 (248)
..|.+.+.+. ..+++.+++.|.+..++..+++.
T Consensus 226 ~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 226 QFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred eeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 3344444443 35689999999999886445544
No 22
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=80.21 E-value=0.99 Score=30.56 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.1
Q ss_pred CCCCEEEEEcCCCCCCCCHHHHH
Q 025806 211 IEGDTIVMGSDGLFDNVFDHEVV 233 (248)
Q Consensus 211 ~~gD~ill~SDGl~d~l~~~~i~ 233 (248)
++|.++|+++||+|=-+....+.
T Consensus 25 ~~G~Rllva~nGv~lEv~r~WL~ 47 (72)
T PF09436_consen 25 RPGHRLLVASNGVFLEVRRPWLH 47 (72)
T ss_pred cCCcEEEEecCcEEEEEechHHH
Confidence 48999999999999666555443
No 23
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=56.98 E-value=8.7 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.3
Q ss_pred EcCCCCEEEEEcCCCCCCCCHHHHHHHhhcC
Q 025806 209 ELIEGDTIVMGSDGLFDNVFDHEVVSMTTRF 239 (248)
Q Consensus 209 ~l~~gD~ill~SDGl~d~l~~~~i~~~v~~~ 239 (248)
-+.+||.++|+.||++-.+..++..+-++..
T Consensus 21 ~l~~~D~vlL~qdGV~aAl~~~~~~~sl~~~ 51 (96)
T COG2168 21 LLTEGDAVLLLQDGVYAALKGNRYLASLRES 51 (96)
T ss_pred HhcccCeEEEEcccchhhhcCcHHHHHHhcC
Confidence 3578999999999999988887777666553
No 24
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=41.26 E-value=15 Score=29.93 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=18.3
Q ss_pred CCCCEEEEEcCCCCCCCCHHHHH
Q 025806 211 IEGDTIVMGSDGLFDNVFDHEVV 233 (248)
Q Consensus 211 ~~gD~ill~SDGl~d~l~~~~i~ 233 (248)
++|.++|+++||+|=-+.-.++.
T Consensus 24 ~~g~r~~~a~~G~~lev~r~wl~ 46 (192)
T TIGR03735 24 KPGHRFIVAADGVWREVRRPWLH 46 (192)
T ss_pred cCCcEEEEecCcEEEEEecHHHH
Confidence 67999999999999766555444
No 25
>PRK03982 heat shock protein HtpX; Provisional
Probab=34.40 E-value=41 Score=29.05 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.7
Q ss_pred cCCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 210 LIEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 210 l~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
..+.+.+|..|||+.+.++++|+..++..
T Consensus 103 ~~~~~~~V~vt~gLl~~l~~~El~AVlAH 131 (288)
T PRK03982 103 RDPKHAVVAVTEGILNLLNEDELEGVIAH 131 (288)
T ss_pred cCCCCeEEEeehHHHhhCCHHHHHHHHHH
Confidence 34567888899999999999999998864
No 26
>PRK05457 heat shock protein HtpX; Provisional
Probab=34.14 E-value=44 Score=28.92 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=26.5
Q ss_pred EEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 207 TVELIEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 207 ~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
..-..+...+|+.|+|+.+.++++|+..++..
T Consensus 109 a~G~~~~~~~V~vt~gLl~~L~~~El~aVlAH 140 (284)
T PRK05457 109 ATGASKNNSLVAVSTGLLQNMSRDEVEAVLAH 140 (284)
T ss_pred EecCCCCCeEEEeehHHhhhCCHHHHHHHHHH
Confidence 33445567899999999999999999999874
No 27
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=31.63 E-value=26 Score=22.74 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.7
Q ss_pred CCCHHHHHHHhhcCC-ChhhhhcC
Q 025806 226 NVFDHEVVSMTTRFI-DVSEAGIS 248 (248)
Q Consensus 226 ~l~~~~i~~~v~~~~-~~~~aa~~ 248 (248)
..+++||-.++.+.. ||.|+++|
T Consensus 18 ~hse~eIya~L~ecnMDpnea~qr 41 (60)
T PF06972_consen 18 CHSEEEIYAMLKECNMDPNEAVQR 41 (60)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 368899999998875 99998864
No 28
>COG3411 Ferredoxin [Energy production and conversion]
Probab=31.61 E-value=56 Score=21.55 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCCC-CCCCHHHHHHHhhcC
Q 025806 211 IEGDTIVMGSDGLF-DNVFDHEVVSMTTRF 239 (248)
Q Consensus 211 ~~gD~ill~SDGl~-d~l~~~~i~~~v~~~ 239 (248)
+.|-.+++.=||+| ..++++.+.+|+.++
T Consensus 15 ~~gPvl~vYpegvWY~~V~p~~a~rIv~~h 44 (64)
T COG3411 15 QDGPVLVVYPEGVWYTRVDPEDARRIVQSH 44 (64)
T ss_pred ccCCEEEEecCCeeEeccCHHHHHHHHHHH
Confidence 44668999999999 789999999998764
No 29
>PRK02391 heat shock protein HtpX; Provisional
Probab=30.74 E-value=39 Score=29.41 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.7
Q ss_pred cCCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 210 LIEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 210 l~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
..+...+|+.|||+.+.++++|+..++..
T Consensus 111 ~~~~~~~V~vt~gLl~~L~~~El~aVlaH 139 (296)
T PRK02391 111 RSPKNAVVCVTTGLMRRLDPDELEAVLAH 139 (296)
T ss_pred CCCCCcEEEecHHHHhhCCHHHHHHHHHH
Confidence 34566889999999999999999998864
No 30
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=26.34 E-value=1.6e+02 Score=23.61 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=43.7
Q ss_pred cccEEEEECCeeEEcCcccccccCCcceeeeccCCccccce--eeEEEEcCCCCEE-------EEEcCCCCCCCCHHHHH
Q 025806 163 DCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDA--MVTTVELIEGDTI-------VMGSDGLFDNVFDHEVV 233 (248)
Q Consensus 163 Dsr~~l~r~g~~~~lt~dh~~~~~~p~~l~~~~~~~~~~~~--~~~~~~l~~gD~i-------ll~SDGl~d~l~~~~i~ 233 (248)
||.+.++-.|..+.|..... ..++..+||...... ...+++-+..|.| +=..||-.+....++|.
T Consensus 6 ~~~a~~~p~g~~~~~~~~~~------~~~~q~lgg~~t~~~~g~~~r~~~~~~da~g~~~~~~~~~~~~~~~~~~ee~V~ 79 (174)
T TIGR03406 6 DVKARLVPSGDPITLPAGTE------VTITQALGGNFTVVVEGNMARIDGKDADALGKEPPPPLDLPENADGEDNEDQVW 79 (174)
T ss_pred ccceEEccCCCeEEcCCCCE------EEEEEccCCeEEEEEcCeEEEecCcChhhhcCCCCCcCCCCcCccccccHHHHH
Confidence 55666666666555554321 134566666543322 3444444444544 22467777778888899
Q ss_pred HHhhcCCChh
Q 025806 234 SMTTRFIDVS 243 (248)
Q Consensus 234 ~~v~~~~~~~ 243 (248)
+.|++..+|+
T Consensus 80 eaL~tV~DPe 89 (174)
T TIGR03406 80 EQLRTVYDPE 89 (174)
T ss_pred HHHcCCCCCC
Confidence 9998877765
No 31
>PRK04897 heat shock protein HtpX; Provisional
Probab=25.00 E-value=60 Score=28.27 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=26.6
Q ss_pred EEEEcCCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 206 TTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 206 ~~~~l~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
+..-..+....|+.|+|+.+.++++|+..++..
T Consensus 111 fa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAH 143 (298)
T PRK04897 111 FATGSSPKNAAVAVTTGLLAIMNREELEGVIGH 143 (298)
T ss_pred EEeccCCCCcEEEeehHHHhhCCHHHHHHHHHH
Confidence 333345567899999999999999999998874
No 32
>CHL00152 rpl32 ribosomal protein L32; Validated
Probab=23.52 E-value=29 Score=21.98 Aligned_cols=10 Identities=50% Similarity=0.541 Sum_probs=6.5
Q ss_pred Cccchhhhhh
Q 025806 1 MVVPVFRASV 10 (248)
Q Consensus 1 ~~~~~~~~~~ 10 (248)
||+|..|++-
T Consensus 1 MAVPKKRtSk 10 (53)
T CHL00152 1 MAVPKKRTSK 10 (53)
T ss_pred CCCCCCccch
Confidence 6666666655
No 33
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=23.49 E-value=93 Score=26.87 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=36.2
Q ss_pred EcCCCCCCcccchHHHHHHHHHHHHhhhhhcccccccHHHHHHHHHhc---cCCCCCceEEEEEEEeCCeEEE
Q 025806 89 ADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAA---TSSVGSATVIVAMLERNGILKV 158 (248)
Q Consensus 89 ~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~tt~~~~l~~~~~l~~ 158 (248)
.=|.||. .+.|+.++-+.+++.+...-.+..+...-.++++....- ...-|..||++.+.+...--++
T Consensus 182 GVGIGGt--~d~aa~LaK~Allr~ig~~n~d~~~a~lE~elle~iN~lGIGp~GlGG~tTal~V~Ie~~p~H~ 252 (273)
T TIGR00722 182 GVGIGGS--FETAAKLAKKALLRPIGERHPNPKIAKLELELLEEINSLGIGPMGLGGKTTALDVKIESAHCHT 252 (273)
T ss_pred EEEeCCC--HHHHHHHHHHHhhhhhccCCCChhHHHHHHHHHHHHHhcCcCCCccCCCeEEEEEEEeecCCcc
Confidence 3366763 678888887777765432211111222233455554432 2334667888888876433333
No 34
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=23.47 E-value=1.3e+02 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=18.4
Q ss_pred EEEEcCCCCEEEEEc--CCCCCCCC--HHHHHHHhhc
Q 025806 206 TTVELIEGDTIVMGS--DGLFDNVF--DHEVVSMTTR 238 (248)
Q Consensus 206 ~~~~l~~gD~ill~S--DGl~d~l~--~~~i~~~v~~ 238 (248)
...++.||+.|++.- +-+.+-++ +++|++++++
T Consensus 189 ~~~~l~PG~~I~Vp~~~~~~~~~~~~ln~~I~~ll~~ 225 (229)
T PF06251_consen 189 QHQELAPGATIYVPFDTSSLPPDFSSLNQDIVELLAN 225 (229)
T ss_dssp -EEE--TT-EEEE-B-TTTS-GGGTTHHHHHHHHHCT
T ss_pred CCCCCCCCCEEEEcCCccccCchHHHHHHHHHHHHHh
Confidence 345789999999977 43444443 3678888765
No 35
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=23.19 E-value=99 Score=21.13 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=25.2
Q ss_pred EcCCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 209 ELIEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 209 ~l~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
+.++||++|+.-.=....+++++..+++.-
T Consensus 35 ~~~vGD~VLVH~G~Ai~~ide~eA~e~l~~ 64 (76)
T TIGR00074 35 EVKVGDYVLVHVGFAISVLDEEEARETLDA 64 (76)
T ss_pred CCCCCCEEEEecChhhhhCCHHHHHHHHHH
Confidence 468999999988777789999998887754
No 36
>PRK02870 heat shock protein HtpX; Provisional
Probab=21.67 E-value=86 Score=27.91 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 211 ~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
.+.+..|..|||+.+.++++|+..++..
T Consensus 152 ~~~~~~Ivvt~GLL~~L~~dEL~aVlAH 179 (336)
T PRK02870 152 SEKSAMVAITTGLLEKLDRDELQAVMAH 179 (336)
T ss_pred CCCCcEEEEehHHhhhCCHHHHHHHHHH
Confidence 4456789999999999999999998864
No 37
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.36 E-value=1.4e+02 Score=15.63 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=14.9
Q ss_pred EeCCeEEEEEeccccEEEE
Q 025806 151 ERNGILKVASVGDCGLRII 169 (248)
Q Consensus 151 ~~~~~l~~a~vGDsr~~l~ 169 (248)
..++.++++--|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3778899999888887653
No 38
>PRK01345 heat shock protein HtpX; Provisional
Probab=21.17 E-value=87 Score=27.57 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 211 ~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
.+....|+.|||+.+.++++|+..++..
T Consensus 103 ~~~~~~V~vt~gLL~~L~~dEL~aVlAH 130 (317)
T PRK01345 103 NPENAAVAATTGLLQRLSPEEVAGVMAH 130 (317)
T ss_pred CCCCeEEEechHHHhhCCHHHHHHHHHH
Confidence 3455789999999999999999998864
No 39
>PRK03072 heat shock protein HtpX; Provisional
Probab=21.12 E-value=78 Score=27.40 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHhhc
Q 025806 211 IEGDTIVMGSDGLFDNVFDHEVVSMTTR 238 (248)
Q Consensus 211 ~~gD~ill~SDGl~d~l~~~~i~~~v~~ 238 (248)
.++..+|..|||+.+.++++|+..++..
T Consensus 106 ~~~~~~v~vt~gLl~~l~~~El~aVlAH 133 (288)
T PRK03072 106 NPRNAAVCCTEGILQILNERELRGVLGH 133 (288)
T ss_pred CCCCcEEEecHHHHHhCCHHHHHHHHHH
Confidence 3455678899999999999999998864
No 40
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=20.54 E-value=82 Score=22.38 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=22.8
Q ss_pred CCEEEEEc--CCCC-CCCCHHHHHHHhhcCC
Q 025806 213 GDTIVMGS--DGLF-DNVFDHEVVSMTTRFI 240 (248)
Q Consensus 213 gD~ill~S--DGl~-d~l~~~~i~~~v~~~~ 240 (248)
+=.+|+.. ||+| ..++++++.++|.++.
T Consensus 53 gp~vvvyP~~~g~wy~~v~p~~v~~Iv~~hl 83 (97)
T cd03062 53 AGNVIIYPKGDGIWYGRVTPEHVPPIVDRLI 83 (97)
T ss_pred CCEEEEEeCCCeeEEeecCHHHHHHHHHHHh
Confidence 44677788 9999 6789999999998753
Done!