BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025807
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
 pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
 pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
           Xylella Fastidiosa
 pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
           Xylella Fastidiosa
          Length = 338

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 90/196 (45%), Gaps = 1/196 (0%)

Query: 29  RLVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDE 88
           + ++CFGE LID +     V                      ++RLGG+  FVG LG D 
Sbjct: 5   KTILCFGEALIDXLAQPL-VKKGXPRAFLQCAGGAPANVAVAVARLGGAVQFVGXLGSDX 63

Query: 89  FGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD 148
           FG  L +   E  V T G+   STA+TALAFV L A GER F F+R P+AD+L       
Sbjct: 64  FGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQ 123

Query: 149 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREG 208
                   IFH  S S                A+ +G+I+S+D N R  LWP+ E     
Sbjct: 124 DASFSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNFRPXLWPNGENPASR 183

Query: 209 IMSIWDQADIIKVKFE 224
           +      AD++K+  E
Sbjct: 184 LWKGLSLADVVKLSSE 199


>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
 pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
          Length = 327

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 3/190 (1%)

Query: 31  VVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEFG 90
           VV  GE+L+D + T    SL                    +SRLG   A + +LG D FG
Sbjct: 24  VVSLGEILVDXISTEEVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFG 83

Query: 91  YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKN 150
             L ++LK   + T G++ D   RT + +V+ ++    ++L +R   AD  L E ++   
Sbjct: 84  NYLLDVLKGEQIITDGIQQDKERRTTIVYVS-KSTRTPDWLPYRE--ADXYLQEDDIIFE 140

Query: 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM 210
           LIK+  +FH  +  L  +P R T + A N A+E G I+ +DP  R  LWP  +     + 
Sbjct: 141 LIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVE 200

Query: 211 SIWDQADIIK 220
            I  +AD +K
Sbjct: 201 EIISRADFVK 210


>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
           Salmonella Enterica Complexed With Aminoimidazole
           Riboside And Atp Analog
 pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
           Salmonella Enterica Complexed With Aminoimidazole
           Riboside And Atp Analog
          Length = 339

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
           ++RLGG   F+G LGDD+ G  L  + ++N VD + +R D+   +A+  V L ADGER F
Sbjct: 60  VARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSF 119

Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
            +  HP AD  +   +L     +Q   F++ SI L   P R   L      +E+G  + +
Sbjct: 120 TYLVHPGADTYVSPQDLPP--FRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLF 177

Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQKMLLHW 237
           D NLR  +W + +   E I      A I KV  +    C      HW
Sbjct: 178 DVNLRSKMWGNTDEIPELIARSAALASICKVSADEL--CQLSGASHW 222


>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
           Salmonella Enterica
 pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
           Salmonella Enterica
 pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
           Complexed With Aminoimidazole Riboside
 pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
           Complexed With Aminoimidazole Riboside
          Length = 339

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 4/167 (2%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
           ++RLGG   F+G LGDD+ G  L  + ++N VD + +R D+   +A+  V L ADGER F
Sbjct: 60  VARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSF 119

Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
            +  HP AD  +   +L     +Q   F++ SI L   P R   L      +E+G  + +
Sbjct: 120 TYLVHPGADTYVSPQDLPP--FRQYEWFYFSSIGLTDRPAREACLEGARRXREAGGYVLF 177

Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQKMLLHW 237
           D NLR   W + +   E I      A I KV  +    C      HW
Sbjct: 178 DVNLRSKXWGNTDEIPELIARSAALASICKVSADEL--CQLSGASHW 222


>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii
 pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii
          Length = 313

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 11/199 (5%)

Query: 30  LVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEF 89
           L+   GE+LID +    G  L                    +SRLG  S+ + K+G+D F
Sbjct: 3   LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPF 61

Query: 90  GYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK 149
           G  L   L + NVDT G+  D    T + FV L+      FL +    A      ++++ 
Sbjct: 62  GEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLY-DDVAYFNXTLNDINW 119

Query: 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI 209
           +++++  I ++GS+ L   P R T    +   K S S++++D NLRL LW  +E   E  
Sbjct: 120 DIVEEAKIVNFGSVILARNPSRETVXKVIKKIKGS-SLIAFDVNLRLDLWRGQE---EEX 175

Query: 210 MSIWDQ----ADIIKVKFE 224
           + + ++    ADI+K   E
Sbjct: 176 IKVLEESIKLADIVKASEE 194


>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With Atp
 pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With
           Amp-Pnp
 pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
           Ph1459 From Pyrococcus Horikoshii In Complex With
           Amp-Pnp
          Length = 313

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 11/199 (5%)

Query: 30  LVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEF 89
           L+   GE+LID +    G  L                    +SRLG  S+ + K+G+D F
Sbjct: 3   LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPF 61

Query: 90  GYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK 149
           G  L   L + NVDT G+  D    T + FV L+      FL +    A      ++++ 
Sbjct: 62  GEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLY-DDVAYFNXTLNDINW 119

Query: 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI 209
           +++++  I ++GS+ L   P R T    +   K S S++++D NLRL LW  +E   E  
Sbjct: 120 DIVEEAKIVNFGSVILARNPSRETVXKVIKKIKGS-SLIAFDVNLRLDLWRGQE---EEX 175

Query: 210 MSIWDQ----ADIIKVKFE 224
           + + ++    ADI+K   E
Sbjct: 176 IKVLEESIKLADIVKASEE 194


>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
           Sulfolobus Tokodaii Complexed With
           2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
 pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
           1) From Sulfolobus Tokodaii
 pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
           1) From Sulfolobus Tokodaii
 pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
           1) From Sulfolobus Tokodaii
 pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
           1) From Sulfolobus Tokodaii
 pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
           1) From Sulfolobus Tokodaii
 pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
           1) From Sulfolobus Tokodaii
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 73  RLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLR--ADGEREF 130
           + G     + K+GDDEFGY     L+   VD S ++ D +A T + F+        + E 
Sbjct: 45  KQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSES 104

Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
           +++R  SA   L   ++D+  +K   + H   I+L      ST   A+  A E  S  S+
Sbjct: 105 IYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITL---AISSTAKEAVYKAFEIASNRSF 161

Query: 191 DPNLRLPLWPSEEAARE 207
           D N+RL LW +EEA RE
Sbjct: 162 DTNIRLKLWSAEEAKRE 178


>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase
 pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase
 pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase
 pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase Complexed With 2-Keto-3-
           Deoxygluconate
 pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase Complexed With 2-Keto-3-
           Deoxygluconate
 pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
           Deoxygluconate Kinase Complexed With 2-Keto-3-
           Deoxygluconate
          Length = 313

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 7/145 (4%)

Query: 77  SSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVT--LRADGEREFLFFR 134
           S + + ++G+DEFG  +    +   +DTS ++ D+ + T + F+        + E +++R
Sbjct: 49  SCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYR 108

Query: 135 HPSADMLLCESELDKNLIKQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPN 193
             SA   L   ++++N ++   + H   I+L I++  +   + A  LAK      S D N
Sbjct: 109 KGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTN 164

Query: 194 LRLPLWPSEEAAREGIMSIWDQADI 218
           +R  LW S E A+E I+SI  + DI
Sbjct: 165 IRPKLWSSLEKAKETILSILKKYDI 189


>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
           5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
           Halodurans C-125 At 1.90 A Resolution
          Length = 332

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 72  SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTA-RTALAFVTLRADGEREF 130
           S+LG  + F+GK+ DD+ G  + +  +   VDTS +  D    +T LAF  +++  E   
Sbjct: 55  SKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSI 114

Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
           L +R   AD+ L   E+++  I++  +      +L   P R   L A+ LAK +   + +
Sbjct: 115 LXYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVF 174

Query: 191 DPNLRLPLWPSEEAAREGIMSIWDQADII 219
           + + R   W + E        + +Q+DI+
Sbjct: 175 ELDYRPYSWETPEETAVYYSLVAEQSDIV 203


>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
           With Atp And Mg+2 From E.Coli
 pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
           With Atp And Mg+2 From E.Coli
 pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
           From E.Coli
 pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
           From E.Coli
          Length = 330

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
           ++RLG     +  +G+D FG +  + L  + VD  G+       T  AFVT    G+R+F
Sbjct: 47  VTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDF 106

Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY 190
           +F    +A   L    +D+N++K  + FH    SL +         A+ + K +G ++S+
Sbjct: 107 IFNIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISF 166

Query: 191 DPNLR 195
           DPN+R
Sbjct: 167 DPNIR 171


>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
 pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
 pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound 2-Keto-3-Deoxygluconate And Adp
 pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound 2-Keto-3-Deoxygluconate And Adp
 pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           With Bound Atp
 pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
 pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
           (Crystal Form 2)
          Length = 309

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 3/175 (1%)

Query: 31  VVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEFG 90
           VV  GE L+  VP   G  L                    ++RLG    FVG++G+DE G
Sbjct: 4   VVTAGEPLVALVPQEPG-HLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELG 62

Query: 91  YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKN 150
            M+   L+   VD +  R  +   T L        G+    ++R  SA   L     D +
Sbjct: 63  AMVEERLRAEGVDLTHFR-RAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPD 121

Query: 151 LIKQGSIFHYGSISLIAEP-CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEA 204
            ++     H   I+    P  R+  L AM  AK  G  +S D N R  LW  EEA
Sbjct: 122 YLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEA 176


>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
           From Oceanicola Granulosus, Unliganded Structure
 pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
           From Oceanicola Granulosus, Unliganded Structure
 pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
           From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
           FORM I
 pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
           From Oceanicola Granulosus With Bound Amp, Crystal Form
           Ii
 pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
           From Oceanicola Granulosus With Bound Amp, Crystal Form
           Ii
          Length = 328

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 4/149 (2%)

Query: 79  AFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSA 138
           ++   +GDD     +   +    +D  G+R        L  +TL   GER F ++R  SA
Sbjct: 70  SYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSA 128

Query: 139 DM-LLCESELDKNLIKQGSIFHYGSISL-IAEPC-RSTQLAAMNLAKESGSILSYDPNLR 195
              L  +++     + +  + ++  I+L I + C R+T L A+  A+ +G  +++DPNLR
Sbjct: 129 ARELAGDADALAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLR 188

Query: 196 LPLWPSEEAAREGIMSIWDQADIIKVKFE 224
             LW       E IM     +DI    FE
Sbjct: 189 PRLWAGTGEMTETIMQGAAVSDIALPSFE 217


>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
 pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
 pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
 pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
           Js666
          Length = 336

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 2/151 (1%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADG-ERE 129
           ++RLG    +  +LG D  G  L        +D S V  D+T +T   F     DG +  
Sbjct: 68  LARLGLKVGWASRLGTDSXGRYLLAAXAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPP 127

Query: 130 FLFFRHPSADMLLCESELDKNLIKQGSIFH-YGSISLIAEPCRSTQLAAMNLAKESGSIL 188
             + R  SA      +++D+  +      H  G    I+           +L + +G  +
Sbjct: 128 VEYHRKGSAASHXGVADIDEAWLLSARHLHATGVFPAISATTLPAARKTXDLXRAAGRSV 187

Query: 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADII 219
           S+DPNLR  LW + E  R+ I  +  +AD +
Sbjct: 188 SFDPNLRPTLWATPELXRDAINDLATRADWV 218


>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
 pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
 pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
 pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
           (Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
           13032 Kitasato At 1.89 A Resolution
          Length = 319

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 2/176 (1%)

Query: 31  VVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDEFG 90
           V+  G + +D  P   GV L                     +R G +SA + ++G+D FG
Sbjct: 11  VLAIGRLGVDIYPLQSGVGLADVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFG 70

Query: 91  YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCES-ELDK 149
             L   L+   VD   V  D T +T + F  +    +    F+R P A  L  ES ++  
Sbjct: 71  EYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSL 130

Query: 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAA 205
           + +++  I  +       EP R T    +         + +D + R   W S E A
Sbjct: 131 DDVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTI-FDLDYRPXFWESPEEA 185


>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
           Shigella Flexneri
 pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
           Shigella Flexneri
          Length = 319

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 80  FVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSAD 139
           +V  LG D F     +     NVDTS  +        L ++   + GER F ++R+ +A 
Sbjct: 52  YVTALGTDSFSQQXLDAWHGENVDTSLTQRXENRLPGLYYIETDSTGERTFYYWRNEAAA 111

Query: 140 MLLCESELDKNLIKQGSIFHY-----GSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194
                SE    + ++ + F Y      S+++++   R   L+ +   +  G  + +D N 
Sbjct: 112 KFWLASEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNY 171

Query: 195 RLPLWPSEEAAREGIMSIWDQADI 218
           R  LW S+E  ++      +  DI
Sbjct: 172 RPRLWASKEETQQVYQQXLECTDI 195


>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
           Agrobacterium Tumefaciens
          Length = 343

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
           + R GG ++  G +GDDE G  +   L E+ +DTSG      AR+AL+ + +   GER  
Sbjct: 76  VHRXGGRASLWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLI 135

Query: 131 L-FFRH 135
           + F+ H
Sbjct: 136 VPFYDH 141


>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
           E.Coli At 1.8a Resolution
 pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
           E.Coli At 1.8a Resolution
 pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
           Adp From E.Coli
 pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
           Adp From E.Coli
          Length = 325

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
           ISRLG  +A   ++G D  G  + +  ++ N+D   ++ D +  T++    +  DGER F
Sbjct: 53  ISRLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTF 112

Query: 131 LFFRHPS 137
           +  R+ S
Sbjct: 113 VTNRNGS 119


>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
 pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
          Length = 331

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 72  SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFL 131
           +RLG  ++ V K+G D FG      LK+N++ T        A T  A + +  +G+   +
Sbjct: 72  ARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIV 131

Query: 132 FFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189
                 A++LL   +L    N+I +  +     +    E   +T L A+ +A+ SG    
Sbjct: 132 IVA--GANLLLNTEDLRAAANVISRAKV-----MVCQLEITPATSLEALTMARRSGVKTL 184

Query: 190 YDP 192
           ++P
Sbjct: 185 FNP 187


>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
           Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
 pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
           Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
 pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
           Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
 pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
           Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
 pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
           Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
 pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
           Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
          Length = 351

 Score = 35.4 bits (80), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 17/187 (9%)

Query: 29  RLVVCFGEMLIDFVPTVGGVSLXXXXXXXXXXXXXXXXXXXXISRLGGSSAFVGKLGDDE 88
           + VV  GE+L+  + T  G+                      +S+LG  +     +  + 
Sbjct: 25  KQVVTIGELLMR-LSTQQGIPFSQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANP 83

Query: 89  FGYMLANILKENNVDTSGV--------RYDSTARTALAFVTLRADGEREFLFFRHPSADM 140
            G M    L  + VDT+ V         Y   + TAL   ++  D +    F RH S D 
Sbjct: 84  IGKMAVEHLWRHQVDTAFVVEAGDRLGTYYLESGTALKAPSVVYDRQHSS-FARHKSMDW 142

Query: 141 LLCESELDKNLIKQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLW 199
            L E      L+K   + H   I++ ++       +  +  AK +G  +S+D N R  LW
Sbjct: 143 DLSE------LLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLW 196

Query: 200 PSEEAAR 206
             E A R
Sbjct: 197 ELEAAKR 203


>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
           In Space Group P212121
 pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
           In Space Group P212121
 pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
           In Space Group P212121
 pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
           In Space Group P212121
 pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
 pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
 pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
 pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
 pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
 pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
 pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
          Length = 309

 Score = 35.0 bits (79), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 73  RLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLF 132
           R G + AF+   GDD  G  +   L  +N+D + V       T +A + +  +GE E + 
Sbjct: 53  RSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV--NGEGENVI 110

Query: 133 FRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDP 192
             H  A+  L  + ++    ++  I +  ++ +  E    + +AA  +A ++ +I++ +P
Sbjct: 111 GIHAGANAALSPALVEA---QRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNP 167


>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
          Length = 304

 Score = 35.0 bits (79), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 72  SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFL 131
           +R+   + F+ K+G D     +    K  ++DTS +   + A+T  AF+T+ A+G+    
Sbjct: 51  ARMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIY 110

Query: 132 FF 133
            +
Sbjct: 111 VY 112


>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
           Sinorhizobium Meliloti
 pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
           Sinorhizobium Meliloti
          Length = 354

 Score = 34.3 bits (77), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGER 128
           ++ LGG +A+ GK+ DD+ G +  + ++   V       D    TA + + +  DGER
Sbjct: 70  VASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTEDGER 127


>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
           2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
           Resolution
 pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
           2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
           Resolution
          Length = 351

 Score = 32.3 bits (72), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGE-RE 129
           +++ G  + FV KL ++  G   A  L++  V T  +      R  + F+ + A     +
Sbjct: 54  LAQXGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGN-RIGIYFLEIGASQRPSK 112

Query: 130 FLFFRHPSADMLLCESELDKNLIKQGS-IFHYGSISLIAEPCRSTQLA-----AMNLAKE 183
            ++ R  SA       + D   I  G+  FH+  I+    P    +L      A+ +A E
Sbjct: 113 VVYDRAHSAISEAKREDFDWEKILDGARWFHFSGIT----PPLGKELPLILEDALKVANE 168

Query: 184 SGSILSYDPNLRLPLWPSEEAAREGI-------MSIWDQADIIKV 221
            G  +S D N R  LW  EEA +  I       + I ++ DI KV
Sbjct: 169 KGVTVSCDLNYRARLWTKEEAQKVXIPFXEYVDVLIANEEDIEKV 213


>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
           Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
           Resolution
          Length = 296

 Score = 30.8 bits (68), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 71  ISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREF 130
           +S+ G  S  V  +G+DE G  +  + KE  +     R D    T    VTL  +G   +
Sbjct: 34  VSQFGFDSRVVSAVGNDELGDEIXEVFKEKQLKNQIERVDYP--TGTVQVTLDDEGVPCY 91

Query: 131 LFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE-SGSILS 189
                 + D +    EL K L        +GS++   E  R+T    ++   +  G +  
Sbjct: 92  EIKEGVAWDNIPFTDEL-KRLALNTRAVCFGSLAQRNEVSRATINRFLDTXPDIDGQLKI 150

Query: 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFE 224
           +D NLR   + ++E  RE     + + +I+K+  E
Sbjct: 151 FDINLRQDFY-TKEVLRES----FKRCNILKINDE 180


>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With Adp
 pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With Adp
 pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With Adp And Amp
 pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With Adp And Amp
 pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With Adp And Atp
 pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With Adp And Atp
 pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With
           5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
           (Zmp)
 pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
           Amp-Activated Protein Kinase In Complex With
           5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
           (Zmp)
          Length = 334

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 181 AKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFET 225
            K S S+L+ +  +  PLW SE     G++++ D  ++IK  +++
Sbjct: 43  VKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS 87


>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
           Amp-activated Protein Kinase Complexed With Amp
 pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
           Amp-activated Protein Kinase Complexed With Amp
 pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
           Activated Protein Kinase Complexed With Atp
 pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
           Activated Protein Kinase Complexed With Atp
          Length = 333

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 181 AKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFET 225
            K S S+L+ +  +  PLW SE     G++++ D  ++IK  +++
Sbjct: 42  VKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,683,664
Number of Sequences: 62578
Number of extensions: 237965
Number of successful extensions: 561
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 27
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)