Query 025807
Match_columns 248
No_of_seqs 130 out of 1294
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:46:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02543 pfkB-type carbohydrat 100.0 3.2E-32 7E-37 241.7 22.1 205 28-232 125-344 (496)
2 PLN02323 probable fructokinase 100.0 6.6E-32 1.4E-36 231.9 22.4 206 27-232 9-214 (330)
3 PLN02967 kinase 100.0 5.9E-32 1.3E-36 242.3 22.6 203 28-231 196-412 (581)
4 PRK15074 inosine/guanosine kin 100.0 4.5E-29 9.7E-34 219.0 21.9 212 14-231 19-263 (434)
5 cd01167 bac_FRK Fructokinases 100.0 1.3E-28 2.7E-33 208.2 22.3 198 30-232 1-198 (295)
6 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.7E-28 3.8E-33 207.2 22.9 208 30-239 1-213 (294)
7 PRK09434 aminoimidazole ribosi 100.0 1.1E-28 2.3E-33 209.6 21.3 196 28-232 2-197 (304)
8 cd01168 adenosine_kinase Adeno 100.0 1.1E-28 2.5E-33 210.2 19.8 194 29-231 2-216 (312)
9 PRK11142 ribokinase; Provision 100.0 2.2E-28 4.7E-33 207.9 20.4 187 28-231 2-194 (306)
10 PTZ00292 ribokinase; Provision 100.0 8.1E-28 1.7E-32 206.2 22.5 196 25-232 12-215 (326)
11 PLN02813 pfkB-type carbohydrat 100.0 8E-28 1.7E-32 212.0 22.5 199 26-231 67-298 (426)
12 cd01944 YegV_kinase_like YegV- 100.0 5.4E-28 1.2E-32 203.9 19.6 193 30-232 1-198 (289)
13 cd01174 ribokinase Ribokinase 100.0 1.3E-27 2.8E-32 201.7 19.9 186 30-232 1-192 (292)
14 PLN02341 pfkB-type carbohydrat 100.0 1.5E-27 3.3E-32 212.9 21.4 204 27-232 71-302 (470)
15 COG0524 RbsK Sugar kinases, ri 100.0 1.6E-27 3.4E-32 203.1 20.3 194 30-231 1-199 (311)
16 cd01942 ribokinase_group_A Rib 100.0 1.6E-27 3.4E-32 199.9 19.1 182 30-227 1-186 (279)
17 PTZ00247 adenosine kinase; Pro 100.0 1.9E-27 4.1E-32 205.4 17.4 194 28-231 5-230 (345)
18 PLN02379 pfkB-type carbohydrat 99.9 6.8E-26 1.5E-30 196.6 19.9 197 24-231 15-248 (367)
19 KOG2855 Ribokinase [Carbohydra 99.9 4.2E-26 9.2E-31 189.1 16.6 206 27-232 8-217 (330)
20 PF00294 PfkB: pfkB family car 99.9 4.2E-26 9E-31 193.1 16.6 196 28-233 1-200 (301)
21 cd01945 ribokinase_group_B Rib 99.9 1.4E-25 3.1E-30 188.6 18.8 185 30-232 1-189 (284)
22 cd01939 Ketohexokinase Ketohex 99.9 1.9E-25 4.2E-30 188.5 19.0 182 30-229 1-193 (290)
23 PRK09850 pseudouridine kinase; 99.9 7.1E-25 1.5E-29 187.0 19.6 189 27-231 3-196 (313)
24 cd01947 Guanosine_kinase_like 99.9 1.9E-24 4.1E-29 180.1 20.7 177 30-231 1-181 (265)
25 TIGR02152 D_ribokin_bact ribok 99.9 2.8E-24 6E-29 181.6 19.2 182 35-232 1-188 (293)
26 cd01940 Fructoselysine_kinase_ 99.9 8.2E-24 1.8E-28 176.1 21.0 172 30-227 1-172 (264)
27 PRK09954 putative kinase; Prov 99.9 8.2E-24 1.8E-28 183.9 20.7 188 29-232 58-250 (362)
28 TIGR02198 rfaE_dom_I rfaE bifu 99.9 3E-24 6.5E-29 183.2 15.8 192 16-231 1-206 (315)
29 cd01941 YeiC_kinase_like YeiC- 99.9 8.1E-24 1.8E-28 178.2 17.3 187 31-232 2-193 (288)
30 cd01943 MAK32 MAK32 kinase. M 99.9 2.4E-24 5.2E-29 184.6 12.5 186 30-232 1-197 (328)
31 PRK09813 fructoselysine 6-kina 99.9 7.7E-23 1.7E-27 170.0 19.5 169 29-226 1-169 (260)
32 cd01172 RfaE_like RfaE encodes 99.9 6.1E-23 1.3E-27 174.2 18.7 184 30-232 1-198 (304)
33 TIGR03828 pfkB 1-phosphofructo 99.9 3.6E-22 7.9E-27 169.4 17.8 181 33-232 4-193 (304)
34 cd01164 FruK_PfkB_like 1-phosp 99.9 1E-21 2.3E-26 165.6 18.5 181 31-231 3-193 (289)
35 PRK11316 bifunctional heptose 99.9 4.7E-22 1E-26 178.6 16.0 191 16-232 4-205 (473)
36 PLN02548 adenosine kinase 99.9 1.5E-21 3.3E-26 167.8 17.0 170 52-231 43-219 (332)
37 TIGR03168 1-PFK hexose kinase, 99.9 3.3E-21 7.1E-26 163.6 17.8 179 35-232 6-193 (303)
38 PRK09513 fruK 1-phosphofructok 99.9 1.5E-20 3.2E-25 160.3 19.0 183 31-232 5-197 (312)
39 TIGR01231 lacC tagatose-6-phos 99.9 1E-20 2.2E-25 161.1 17.7 183 33-231 4-193 (309)
40 PRK13508 tagatose-6-phosphate 99.9 1.3E-20 2.9E-25 160.4 18.3 183 31-232 3-194 (309)
41 KOG2854 Possible pfkB family c 99.9 3.4E-21 7.4E-26 158.3 13.9 192 31-232 9-231 (343)
42 PRK10294 6-phosphofructokinase 99.9 3.9E-20 8.5E-25 157.5 18.1 185 31-232 5-197 (309)
43 cd01937 ribokinase_group_D Rib 99.8 3.7E-20 8.1E-25 153.3 16.0 169 30-229 1-169 (254)
44 PLN02630 pfkB-type carbohydrat 99.8 8.5E-20 1.9E-24 156.3 18.1 175 27-229 10-195 (335)
45 cd01946 ribokinase_group_C Rib 99.8 2.2E-19 4.8E-24 150.5 15.8 178 30-232 1-180 (277)
46 KOG2947 Carbohydrate kinase [C 99.8 1.2E-18 2.5E-23 137.3 16.2 184 28-230 4-200 (308)
47 COG2870 RfaE ADP-heptose synth 99.8 1.6E-17 3.5E-22 139.8 17.4 192 15-232 3-205 (467)
48 COG1105 FruK Fructose-1-phosph 99.8 1.6E-17 3.5E-22 138.0 15.7 178 35-232 7-195 (310)
49 cd00287 ribokinase_pfkB_like r 99.7 5.3E-16 1.2E-20 123.2 14.6 122 30-232 1-126 (196)
50 KOG3009 Predicted carbohydrate 98.5 6.1E-07 1.3E-11 77.6 8.7 141 29-227 341-486 (614)
51 cd01173 pyridoxal_pyridoxamine 97.8 9.8E-05 2.1E-09 61.1 8.6 78 153-232 71-153 (254)
52 PRK07105 pyridoxamine kinase; 97.7 0.00015 3.3E-09 61.0 7.4 77 154-232 75-154 (284)
53 cd01938 ADPGK_ADPPFK ADP-depen 97.6 0.0012 2.6E-08 58.7 12.1 165 56-231 101-286 (445)
54 PRK14039 ADP-dependent glucoki 97.6 0.0024 5.3E-08 56.6 13.8 77 152-232 208-295 (453)
55 PRK12413 phosphomethylpyrimidi 97.5 0.00021 4.6E-09 59.0 6.2 137 79-232 5-146 (253)
56 TIGR00687 pyridox_kin pyridoxa 97.4 0.00054 1.2E-08 57.7 6.8 78 152-232 72-155 (286)
57 PRK05756 pyridoxamine kinase; 97.4 0.00052 1.1E-08 57.9 6.6 79 152-232 72-155 (286)
58 cd01169 HMPP_kinase 4-amino-5- 97.3 0.0016 3.4E-08 53.4 8.5 74 154-232 68-145 (242)
59 PLN02978 pyridoxal kinase 97.3 0.0028 6.2E-08 54.0 9.9 75 155-232 87-166 (308)
60 PRK08176 pdxK pyridoxal-pyrido 97.2 0.0011 2.5E-08 55.7 7.4 77 153-232 87-169 (281)
61 PF04587 ADP_PFK_GK: ADP-speci 97.2 0.0019 4.1E-08 57.8 8.9 77 151-231 206-292 (444)
62 TIGR02045 P_fruct_ADP ADP-spec 97.2 0.009 1.9E-07 53.0 12.3 78 150-231 205-292 (446)
63 PTZ00344 pyridoxal kinase; Pro 97.1 0.0014 3E-08 55.6 6.9 75 155-232 78-156 (296)
64 TIGR00097 HMP-P_kinase phospho 97.1 0.0032 7E-08 52.1 8.2 73 154-232 67-144 (254)
65 PRK06427 bifunctional hydroxy- 97.0 0.0039 8.4E-08 51.9 8.1 73 154-232 73-150 (266)
66 cd01170 THZ_kinase 4-methyl-5- 96.9 0.0037 8.1E-08 51.4 7.4 78 150-232 45-124 (242)
67 PRK08573 phosphomethylpyrimidi 96.9 0.0025 5.5E-08 57.2 6.8 62 170-232 82-147 (448)
68 PRK12412 pyridoxal kinase; Rev 96.8 0.0059 1.3E-07 51.0 7.9 73 155-232 73-149 (268)
69 PRK14038 ADP-dependent glucoki 96.8 0.04 8.7E-07 49.0 13.0 77 150-231 220-300 (453)
70 PRK03979 ADP-specific phosphof 96.7 0.03 6.5E-07 49.9 11.6 75 153-231 221-306 (463)
71 PF08543 Phos_pyr_kin: Phospho 96.4 0.047 1E-06 45.0 10.4 72 154-231 60-135 (246)
72 PRK09355 hydroxyethylthiazole 96.0 0.029 6.2E-07 46.8 7.4 78 150-232 50-129 (263)
73 PRK12616 pyridoxal kinase; Rev 95.9 0.045 9.7E-07 45.8 8.1 73 154-232 74-151 (270)
74 TIGR00196 yjeF_cterm yjeF C-te 95.6 0.059 1.3E-06 45.1 7.8 70 151-232 89-158 (272)
75 COG2240 PdxK Pyridoxal/pyridox 95.4 0.028 6.1E-07 46.7 4.9 79 151-232 70-153 (281)
76 cd01171 YXKO-related B.subtili 95.3 0.049 1.1E-06 44.9 6.1 71 151-232 74-145 (254)
77 TIGR00694 thiM hydroxyethylthi 95.3 0.075 1.6E-06 43.9 7.1 78 150-232 45-124 (249)
78 COG0351 ThiD Hydroxymethylpyri 94.7 0.11 2.3E-06 43.0 6.4 62 170-232 83-149 (263)
79 PF02110 HK: Hydroxyethylthiaz 94.7 0.2 4.4E-06 41.1 8.0 78 150-232 45-124 (246)
80 PLN02898 HMP-P kinase/thiamin- 94.7 0.17 3.7E-06 46.2 8.4 72 154-231 78-154 (502)
81 PRK14713 multifunctional hydro 94.4 0.19 4E-06 46.3 7.8 73 154-232 98-174 (530)
82 PTZ00347 phosphomethylpyrimidi 94.0 0.21 4.5E-06 45.7 7.4 60 171-232 311-377 (504)
83 PRK10076 pyruvate formate lyas 93.7 0.52 1.1E-05 38.0 8.4 67 156-232 40-111 (213)
84 COG2145 ThiM Hydroxyethylthiaz 93.5 0.58 1.2E-05 38.5 8.3 78 150-232 51-130 (265)
85 PRK09517 multifunctional thiam 93.3 0.32 6.8E-06 46.8 7.6 71 154-231 310-385 (755)
86 KOG4184 Predicted sugar kinase 92.1 1.3 2.9E-05 38.0 8.8 164 55-232 137-318 (478)
87 PTZ00493 phosphomethylpyrimidi 91.7 0.72 1.6E-05 39.6 7.0 45 187-231 107-155 (321)
88 COG1180 PflA Pyruvate-formate 89.8 2.5 5.4E-05 35.2 8.4 70 154-233 83-157 (260)
89 KOG2599 Pyridoxal/pyridoxine/p 89.3 0.33 7.1E-06 40.1 2.7 81 151-234 78-163 (308)
90 KOG3974 Predicted sugar kinase 82.5 4.6 0.0001 33.4 6.0 80 150-234 97-176 (306)
91 TIGR00334 5S_RNA_mat_M5 ribonu 78.1 13 0.00028 28.8 6.9 64 154-227 22-85 (174)
92 PF01118 Semialdhyde_dh: Semia 74.2 11 0.00023 27.1 5.5 99 81-197 2-101 (121)
93 TIGR02826 RNR_activ_nrdG3 anae 72.4 32 0.00069 25.9 7.8 58 156-226 63-120 (147)
94 COG4809 Archaeal ADP-dependent 64.6 1E+02 0.0022 27.3 13.0 79 150-232 221-309 (466)
95 PRK06702 O-acetylhomoserine am 64.5 75 0.0016 28.6 9.7 21 174-194 166-186 (432)
96 PRK15452 putative protease; Pr 63.6 59 0.0013 29.4 8.9 86 144-230 13-104 (443)
97 PF00070 Pyr_redox: Pyridine n 63.4 15 0.00032 24.1 4.0 42 63-104 10-57 (80)
98 KOG2598 Phosphomethylpyrimidin 61.4 9.7 0.00021 33.9 3.3 47 186-232 120-169 (523)
99 PRK05967 cystathionine beta-ly 60.5 1E+02 0.0022 27.3 9.8 42 153-195 148-189 (395)
100 COG0826 Collagenase and relate 60.1 1E+02 0.0022 26.9 9.4 85 147-232 19-109 (347)
101 PRK06598 aspartate-semialdehyd 57.9 95 0.0021 27.3 8.9 93 81-195 4-100 (369)
102 COG0036 Rpe Pentose-5-phosphat 56.5 32 0.00069 27.8 5.3 119 83-221 10-137 (220)
103 cd00562 NifX_NifB This CD repr 55.9 24 0.00053 24.1 4.2 39 61-104 47-85 (102)
104 PRK08114 cystathionine beta-ly 53.5 96 0.0021 27.5 8.4 51 55-107 79-132 (395)
105 PRK09028 cystathionine beta-ly 52.7 1.2E+02 0.0026 26.9 8.8 42 153-195 145-186 (394)
106 PRK08133 O-succinylhomoserine 51.2 1.2E+02 0.0025 26.8 8.6 21 174-194 165-185 (390)
107 PF04413 Glycos_transf_N: 3-De 50.3 72 0.0016 24.9 6.4 58 172-229 105-164 (186)
108 PF00919 UPF0004: Uncharacteri 49.5 64 0.0014 22.3 5.4 62 152-221 34-98 (98)
109 PRK09722 allulose-6-phosphate 49.0 63 0.0014 26.3 6.0 56 153-221 81-136 (229)
110 COG0626 MetC Cystathionine bet 48.8 1E+02 0.0022 27.4 7.7 51 53-107 78-133 (396)
111 PRK06901 aspartate-semialdehyd 47.5 1.3E+02 0.0028 25.9 7.9 84 85-192 9-95 (322)
112 PF02579 Nitro_FeMo-Co: Dinitr 47.3 13 0.00029 25.0 1.7 42 58-104 36-77 (94)
113 PRK07582 cystathionine gamma-l 46.7 91 0.002 27.2 7.2 53 56-108 68-121 (366)
114 PRK05968 hypothetical protein; 46.7 2E+02 0.0044 25.2 9.6 41 153-194 146-186 (389)
115 PF02492 cobW: CobW/HypB/UreG, 46.4 34 0.00075 26.3 4.1 72 154-229 84-156 (178)
116 COG0373 HemA Glutamyl-tRNA red 46.2 1.3E+02 0.0027 27.0 7.8 133 71-232 170-303 (414)
117 PRK10565 putative carbohydrate 46.1 53 0.0012 30.2 5.8 65 152-231 318-384 (508)
118 PRK08134 O-acetylhomoserine am 46.1 2.2E+02 0.0047 25.6 9.6 42 153-195 148-189 (433)
119 PRK08247 cystathionine gamma-s 45.9 2E+02 0.0043 25.0 9.2 41 153-194 135-175 (366)
120 TIGR01768 GGGP-family geranylg 45.1 1.1E+02 0.0025 24.8 6.9 65 151-232 24-92 (223)
121 smart00642 Aamy Alpha-amylase 44.4 29 0.00063 26.6 3.3 23 171-193 69-91 (166)
122 PRK05939 hypothetical protein; 44.1 2E+02 0.0042 25.5 8.9 40 154-194 131-170 (397)
123 COG1646 Predicted phosphate-bi 43.7 1.5E+02 0.0032 24.4 7.2 42 151-195 38-80 (240)
124 PRK04169 geranylgeranylglycery 43.7 1.5E+02 0.0032 24.3 7.4 65 151-232 29-97 (232)
125 PRK07050 cystathionine beta-ly 43.7 2E+02 0.0044 25.3 9.0 42 154-196 150-191 (394)
126 PF00289 CPSase_L_chain: Carba 43.5 40 0.00086 24.0 3.7 95 83-188 7-102 (110)
127 PRK15447 putative protease; Pr 43.1 1.9E+02 0.004 24.6 8.3 41 153-193 27-69 (301)
128 TIGR02494 PFLE_PFLC glycyl-rad 42.5 1.1E+02 0.0023 25.7 6.8 66 156-231 127-197 (295)
129 PRK15394 4-deoxy-4-formamido-L 41.3 49 0.0011 28.1 4.4 41 57-98 14-54 (296)
130 TIGR01328 met_gam_lyase methio 41.3 1.5E+02 0.0033 26.1 7.8 22 174-195 163-184 (391)
131 TIGR01325 O_suc_HS_sulf O-succ 41.3 1.6E+02 0.0035 25.7 7.9 22 174-195 158-179 (380)
132 PRK05613 O-acetylhomoserine am 40.8 2.7E+02 0.0058 25.1 9.3 21 174-194 174-194 (437)
133 TIGR03128 RuMP_HxlA 3-hexulose 40.3 1.5E+02 0.0032 23.3 6.9 58 152-222 74-133 (206)
134 COG1433 Uncharacterized conser 40.2 52 0.0011 23.9 3.8 42 58-104 48-89 (121)
135 PRK08574 cystathionine gamma-s 39.9 2.1E+02 0.0045 25.2 8.4 40 154-195 137-177 (385)
136 cd00851 MTH1175 This uncharact 39.8 54 0.0012 22.3 3.9 38 62-104 50-87 (103)
137 TIGR03576 pyridox_MJ0158 pyrid 39.5 2.5E+02 0.0054 24.2 9.2 41 154-194 136-177 (346)
138 cd00614 CGS_like CGS_like: Cys 39.4 1.7E+02 0.0037 25.4 7.8 22 174-195 144-165 (369)
139 PRK11145 pflA pyruvate formate 39.2 1.7E+02 0.0037 23.7 7.3 67 157-231 73-144 (246)
140 PRK08248 O-acetylhomoserine am 39.1 1.7E+02 0.0036 26.3 7.8 20 175-194 169-188 (431)
141 COG2248 Predicted hydrolase (m 38.6 2.4E+02 0.0051 23.6 9.1 95 114-216 163-265 (304)
142 PRK06444 prephenate dehydrogen 38.5 1.4E+02 0.0029 23.7 6.3 24 81-104 3-27 (197)
143 PRK14106 murD UDP-N-acetylmura 38.3 1.7E+02 0.0037 26.1 7.8 43 60-103 13-55 (450)
144 PF13460 NAD_binding_10: NADH( 38.2 1.6E+02 0.0035 22.1 6.8 94 82-192 2-96 (183)
145 COG3033 TnaA Tryptophanase [Am 38.1 38 0.00081 29.7 3.2 52 167-222 201-265 (471)
146 KOG0053 Cystathionine beta-lya 37.6 1.1E+02 0.0024 27.3 6.1 22 175-196 182-203 (409)
147 PF00128 Alpha-amylase: Alpha 37.5 40 0.00086 27.9 3.4 23 171-193 51-73 (316)
148 PRK13580 serine hydroxymethylt 37.0 1.9E+02 0.0042 26.6 7.7 161 58-223 116-284 (493)
149 TIGR01125 MiaB-like tRNA modif 36.9 1.3E+02 0.0029 26.9 6.8 70 152-230 34-103 (430)
150 CHL00200 trpA tryptophan synth 36.9 1.1E+02 0.0023 25.6 5.8 133 75-225 91-234 (263)
151 PF00308 Bac_DnaA: Bacterial d 36.6 2.2E+02 0.0048 22.8 9.0 81 150-232 93-177 (219)
152 COG1889 NOP1 Fibrillarin-like 36.0 1.2E+02 0.0026 24.5 5.5 62 169-245 108-176 (231)
153 PF04016 DUF364: Domain of unk 35.4 93 0.002 23.3 4.8 43 148-194 56-98 (147)
154 PRK03673 hypothetical protein; 34.9 1.4E+02 0.0029 26.7 6.4 48 63-112 22-69 (396)
155 PF01212 Beta_elim_lyase: Beta 34.7 59 0.0013 27.5 4.0 79 140-221 104-191 (290)
156 cd04915 ACT_AK-Ectoine_2 ACT d 34.5 99 0.0022 19.4 4.2 43 78-121 2-48 (66)
157 PRK07810 O-succinylhomoserine 34.1 3.3E+02 0.0071 24.1 8.8 41 154-196 155-196 (403)
158 PRK08249 cystathionine gamma-s 34.0 2E+02 0.0043 25.4 7.4 40 154-195 149-189 (398)
159 PRK00278 trpC indole-3-glycero 33.8 2.4E+02 0.0052 23.3 7.4 67 146-226 125-191 (260)
160 PRK10017 colanic acid biosynth 33.6 2.9E+02 0.0063 24.8 8.3 79 150-231 113-192 (426)
161 PLN00203 glutamyl-tRNA reducta 33.5 2.1E+02 0.0047 26.4 7.6 39 65-103 248-291 (519)
162 TIGR00177 molyb_syn molybdenum 33.5 1.7E+02 0.0036 21.7 5.9 47 62-110 27-73 (144)
163 PF03853 YjeF_N: YjeF-related 33.1 55 0.0012 25.1 3.3 45 59-103 36-83 (169)
164 PRK06728 aspartate-semialdehyd 33.0 3.3E+02 0.0072 23.7 9.1 91 81-195 8-101 (347)
165 cd04911 ACT_AKiii-YclM-BS_1 AC 33.0 1E+02 0.0023 20.3 4.1 30 89-121 17-46 (76)
166 PF05014 Nuc_deoxyrib_tr: Nucl 33.0 1.7E+02 0.0037 20.4 6.6 66 158-225 1-71 (113)
167 PF07745 Glyco_hydro_53: Glyco 32.8 48 0.0011 28.7 3.2 33 169-202 55-87 (332)
168 COG3867 Arabinogalactan endo-1 32.7 67 0.0015 27.4 3.8 33 170-203 102-134 (403)
169 COG2893 ManX Phosphotransferas 32.6 53 0.0011 24.6 3.0 30 56-85 65-94 (143)
170 PF04230 PS_pyruv_trans: Polys 32.4 2.6E+02 0.0055 22.2 8.5 53 174-228 88-140 (286)
171 COG1058 CinA Predicted nucleot 32.3 1.5E+02 0.0032 24.7 5.7 48 62-111 21-68 (255)
172 PF13407 Peripla_BP_4: Peripla 32.2 2.3E+02 0.005 22.6 7.1 71 150-241 51-122 (257)
173 TIGR01329 cysta_beta_ly_E cyst 32.2 2.8E+02 0.0061 24.2 8.0 40 153-194 130-170 (378)
174 TIGR02491 NrdG anaerobic ribon 32.1 1.2E+02 0.0026 22.8 5.0 62 156-221 65-128 (154)
175 PRK03975 tfx putative transcri 32.1 1.5E+02 0.0033 22.1 5.3 44 64-107 52-97 (141)
176 COG0269 SgbH 3-hexulose-6-phos 31.9 2.8E+02 0.006 22.5 7.7 60 151-221 77-136 (217)
177 cd00885 cinA Competence-damage 31.8 1.9E+02 0.0041 22.2 6.1 35 63-99 20-54 (170)
178 PRK05994 O-acetylhomoserine am 31.6 2.9E+02 0.0064 24.7 8.1 41 153-195 147-188 (427)
179 KOG0257 Kynurenine aminotransf 31.6 1.4E+02 0.003 26.7 5.7 54 139-192 157-212 (420)
180 PRK13753 dihydropteroate synth 31.2 2.7E+02 0.0058 23.5 7.2 42 152-193 36-84 (279)
181 PRK07324 transaminase; Validat 30.9 3.5E+02 0.0077 23.4 9.5 39 154-192 153-193 (373)
182 PF06626 DUF1152: Protein of u 30.9 2.4E+02 0.0052 24.0 6.9 73 31-105 27-121 (297)
183 COG2226 UbiE Methylase involve 30.7 3E+02 0.0066 22.6 8.7 75 169-245 134-218 (238)
184 TIGR01326 OAH_OAS_sulfhy OAH/O 30.6 3.1E+02 0.0068 24.4 8.1 21 174-194 161-181 (418)
185 cd02812 PcrB_like PcrB_like pr 30.1 2E+02 0.0043 23.3 6.1 65 153-233 24-92 (219)
186 KOG3111 D-ribulose-5-phosphate 29.9 1.2E+02 0.0026 24.1 4.6 40 174-221 101-140 (224)
187 TIGR01745 asd_gamma aspartate- 29.5 4E+02 0.0086 23.5 8.2 93 81-195 3-99 (366)
188 PRK08005 epimerase; Validated 29.4 1.6E+02 0.0034 23.7 5.4 40 174-221 95-134 (210)
189 PF09314 DUF1972: Domain of un 28.9 2.9E+02 0.0062 21.7 7.5 73 154-231 92-169 (185)
190 PF14359 DUF4406: Domain of un 28.8 1.9E+02 0.0042 19.7 7.0 61 159-221 2-65 (92)
191 PRK08745 ribulose-phosphate 3- 28.7 1.6E+02 0.0036 23.8 5.5 55 153-221 84-138 (223)
192 PF01408 GFO_IDH_MocA: Oxidore 28.3 1.3E+02 0.0028 20.9 4.4 32 154-192 62-93 (120)
193 PF13986 DUF4224: Domain of un 28.1 91 0.002 18.4 2.9 26 220-245 2-31 (47)
194 PF01053 Cys_Met_Meta_PP: Cys/ 28.1 1.8E+02 0.0039 25.7 6.0 41 154-195 140-181 (386)
195 PRK06234 methionine gamma-lyas 28.1 3.6E+02 0.0077 23.8 8.0 21 174-194 168-190 (400)
196 PRK06327 dihydrolipoamide dehy 28.1 2.6E+02 0.0057 25.3 7.3 42 64-105 195-242 (475)
197 PRK01215 competence damage-ind 28.0 2.2E+02 0.0047 23.8 6.2 46 63-110 24-69 (264)
198 PRK03659 glutathione-regulated 27.9 4.7E+02 0.01 24.6 9.1 123 80-231 402-527 (601)
199 PTZ00170 D-ribulose-5-phosphat 27.8 1.3E+02 0.0028 24.3 4.8 54 153-219 87-142 (228)
200 cd01124 KaiC KaiC is a circadi 27.6 2.6E+02 0.0057 21.1 6.4 111 67-192 19-137 (187)
201 COG0219 CspR Predicted rRNA me 27.4 91 0.002 23.7 3.4 39 62-104 14-52 (155)
202 PLN03050 pyridoxine (pyridoxam 26.8 1.9E+02 0.0042 23.8 5.6 24 59-82 71-94 (246)
203 PRK05671 aspartate-semialdehyd 26.6 4.2E+02 0.0092 22.9 9.1 91 81-195 7-99 (336)
204 PLN00175 aminotransferase fami 26.6 4.5E+02 0.0097 23.2 9.7 42 153-194 186-229 (413)
205 cd00886 MogA_MoaB MogA_MoaB fa 26.5 2.3E+02 0.0051 21.1 5.7 35 63-99 21-55 (152)
206 PRK07845 flavoprotein disulfid 26.1 1.1E+02 0.0024 27.6 4.5 43 63-105 188-236 (466)
207 PRK00912 ribonuclease P protei 26.0 1.6E+02 0.0035 23.8 5.1 68 174-247 156-226 (237)
208 TIGR02717 AcCoA-syn-alpha acet 26.0 4.9E+02 0.011 23.5 8.9 26 78-103 7-36 (447)
209 cd04924 ACT_AK-Arch_2 ACT doma 25.9 1.2E+02 0.0025 18.4 3.4 42 79-121 2-48 (66)
210 cd04726 KGPDC_HPS 3-Keto-L-gul 25.9 2.7E+02 0.0058 21.6 6.2 57 152-222 75-133 (202)
211 PF13344 Hydrolase_6: Haloacid 25.7 2.3E+02 0.0049 19.5 5.3 40 64-104 19-58 (101)
212 KOG1372 GDP-mannose 4,6 dehydr 25.6 65 0.0014 26.8 2.5 34 77-112 29-63 (376)
213 COG2257 Uncharacterized homolo 25.6 94 0.002 21.3 2.9 22 171-192 31-52 (92)
214 PRK01438 murD UDP-N-acetylmura 25.5 1.1E+02 0.0024 27.7 4.4 45 59-104 23-67 (480)
215 cd07265 2_3_CTD_N N-terminal d 25.1 2E+02 0.0044 19.8 5.0 44 90-133 75-118 (122)
216 cd00615 Orn_deC_like Ornithine 25.1 4E+02 0.0087 22.1 8.8 39 154-194 154-192 (294)
217 COG2873 MET17 O-acetylhomoseri 24.7 1.3E+02 0.0029 26.6 4.3 38 176-222 168-205 (426)
218 TIGR00736 nifR3_rel_arch TIM-b 24.6 2.9E+02 0.0064 22.5 6.2 46 171-222 54-99 (231)
219 smart00084 NMU Neuromedin U. N 24.5 37 0.00081 17.2 0.6 8 241-248 15-22 (26)
220 PRK08883 ribulose-phosphate 3- 24.5 2.2E+02 0.0049 22.9 5.5 55 153-221 80-134 (220)
221 PRK10534 L-threonine aldolase; 24.5 1.6E+02 0.0034 25.0 4.9 37 155-191 130-166 (333)
222 PF13200 DUF4015: Putative gly 24.3 88 0.0019 26.9 3.3 47 174-221 176-223 (316)
223 cd07266 HPCD_N_class_II N-term 24.1 2.1E+02 0.0046 19.6 4.9 50 84-133 68-117 (121)
224 PRK09754 phenylpropionate diox 24.1 1.3E+02 0.0027 26.5 4.4 42 64-105 156-204 (396)
225 PF07505 Gp37_Gp68: Phage prot 23.8 1.8E+02 0.0039 24.3 4.9 43 150-192 184-228 (261)
226 PF11965 DUF3479: Domain of un 23.8 1.7E+02 0.0038 22.5 4.5 16 207-222 49-64 (164)
227 PRK13111 trpA tryptophan synth 23.6 3.7E+02 0.008 22.3 6.8 147 65-228 77-234 (258)
228 PF02593 dTMP_synthase: Thymid 23.6 1.6E+02 0.0035 23.8 4.4 53 152-215 49-101 (217)
229 TIGR03537 DapC succinyldiamino 23.3 2.6E+02 0.0056 23.9 6.1 52 143-194 125-178 (350)
230 TIGR03884 sel_bind_Methan sele 23.2 2.1E+02 0.0045 18.8 4.0 36 152-187 9-44 (74)
231 PRK07818 dihydrolipoamide dehy 23.2 1.4E+02 0.003 26.9 4.5 42 64-105 184-231 (466)
232 PF10678 DUF2492: Protein of u 23.2 1.9E+02 0.0042 19.2 4.0 36 67-102 26-61 (78)
233 cd04919 ACT_AK-Hom3_2 ACT doma 23.1 1.9E+02 0.004 17.6 4.3 42 79-121 2-48 (66)
234 TIGR01769 GGGP geranylgeranylg 23.0 2.8E+02 0.0062 22.1 5.7 63 153-232 23-90 (205)
235 PRK13512 coenzyme A disulfide 23.0 1.4E+02 0.0029 26.8 4.4 42 64-105 160-207 (438)
236 PRK13018 cell division protein 23.0 5.3E+02 0.012 22.8 10.0 151 57-227 33-188 (378)
237 PF05106 Phage_holin_3: Phage 23.0 1.4E+02 0.0031 20.7 3.6 35 65-99 58-99 (100)
238 PLN02383 aspartate semialdehyd 22.9 5.1E+02 0.011 22.5 8.8 38 150-195 65-102 (344)
239 TIGR03609 S_layer_CsaB polysac 22.9 4.4E+02 0.0096 21.9 8.7 79 150-230 60-142 (298)
240 PF03969 AFG1_ATPase: AFG1-lik 22.8 3.9E+02 0.0086 23.4 7.1 77 148-224 121-201 (362)
241 TIGR03853 matur_matur probable 22.7 2E+02 0.0043 19.1 3.9 38 65-102 22-59 (77)
242 COG1485 Predicted ATPase [Gene 22.6 4.4E+02 0.0095 23.2 7.1 76 148-223 124-203 (367)
243 PF02700 PurS: Phosphoribosylf 22.4 1E+02 0.0023 20.5 2.7 18 86-103 14-31 (80)
244 PLN02271 serine hydroxymethylt 22.3 2.2E+02 0.0048 26.8 5.6 63 152-222 296-358 (586)
245 TIGR02354 thiF_fam2 thiamine b 22.2 87 0.0019 24.8 2.7 20 58-77 27-46 (200)
246 PF10087 DUF2325: Uncharacteri 22.1 2.6E+02 0.0057 18.9 6.9 41 150-194 44-84 (97)
247 PRK14325 (dimethylallyl)adenos 22.1 2.7E+02 0.006 25.0 6.2 68 152-226 38-109 (444)
248 PF06576 DUF1133: Protein of u 22.0 3.8E+02 0.0083 20.8 6.2 61 169-244 55-118 (176)
249 TIGR00200 cinA_nterm competenc 22.0 3.2E+02 0.007 24.5 6.5 46 63-110 21-66 (413)
250 PF05762 VWA_CoxE: VWA domain 21.9 2.5E+02 0.0054 22.5 5.4 66 153-221 149-215 (222)
251 PLN00196 alpha-amylase; Provis 21.8 1E+02 0.0022 27.7 3.3 22 171-192 91-112 (428)
252 PRK08091 ribulose-phosphate 3- 21.5 2.9E+02 0.0063 22.5 5.6 124 79-221 15-146 (228)
253 COG0143 MetG Methionyl-tRNA sy 21.4 1E+02 0.0022 28.8 3.3 36 68-105 35-70 (558)
254 PRK13660 hypothetical protein; 21.4 3.2E+02 0.007 21.4 5.6 65 152-222 40-108 (182)
255 TIGR01438 TGR thioredoxin and 21.2 1.7E+02 0.0036 26.7 4.7 42 64-105 192-238 (484)
256 COG1921 SelA Selenocysteine sy 21.1 2.6E+02 0.0056 24.9 5.5 45 176-225 178-223 (395)
257 cd02742 GH20_hexosaminidase Be 21.1 4.1E+02 0.0089 22.4 6.8 66 169-241 69-147 (303)
258 TIGR00089 RNA modification enz 21.1 2.5E+02 0.0054 25.1 5.7 66 152-225 34-102 (429)
259 PRK13307 bifunctional formalde 21.0 4.2E+02 0.0091 23.6 6.9 58 153-222 249-306 (391)
260 COG0062 Uncharacterized conser 21.0 4.4E+02 0.0095 21.1 10.1 26 167-192 133-159 (203)
261 PRK09441 cytoplasmic alpha-amy 20.8 1.1E+02 0.0023 27.9 3.3 22 171-192 80-101 (479)
262 TIGR01421 gluta_reduc_1 glutat 20.8 1.7E+02 0.0037 26.3 4.6 42 64-105 178-225 (450)
263 PF04252 RNA_Me_trans: Predict 20.7 1.4E+02 0.003 23.8 3.4 46 126-179 62-107 (196)
264 TIGR03127 RuMP_HxlB 6-phospho 20.7 3.8E+02 0.0083 20.3 6.5 23 172-194 86-108 (179)
265 TIGR02053 MerA mercuric reduct 20.7 1.7E+02 0.0037 26.2 4.6 43 63-105 177-225 (463)
266 PRK03670 competence damage-ind 20.7 3.4E+02 0.0074 22.4 6.0 35 63-99 21-55 (252)
267 TIGR03278 methan_mark_10 putat 20.6 4.9E+02 0.011 23.2 7.3 70 154-231 73-149 (404)
268 PRK13237 tyrosine phenol-lyase 20.6 2.2E+02 0.0047 26.0 5.1 52 170-222 196-257 (460)
269 cd05014 SIS_Kpsf KpsF-like pro 20.4 3.2E+02 0.0068 19.2 6.4 37 172-221 61-97 (128)
270 COG0052 RpsB Ribosomal protein 20.4 3.8E+02 0.0082 22.2 5.9 47 155-226 157-205 (252)
271 PF09140 MipZ: ATPase MipZ; I 20.3 89 0.0019 26.0 2.4 20 64-83 18-37 (261)
272 PRK14727 putative mercuric red 20.2 1.6E+02 0.0036 26.6 4.4 42 64-105 200-246 (479)
No 1
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=3.2e-32 Score=241.69 Aligned_cols=205 Identities=37% Similarity=0.640 Sum_probs=175.3
Q ss_pred CccEEEEcceeeeeccCCCCc--cc------------ccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHH
Q 025807 28 DRLVVCFGEMLIDFVPTVGGV--SL------------AEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYML 93 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~~--p~------------~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i 93 (248)
.+.|+|+|++.+|+++..... +. .....+...+||+++|+|++|++||.++.|+|.||+|.+|+++
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l 204 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEEL 204 (496)
T ss_pred CCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 355999999999999864321 10 1456678899999999999999999999999999999999999
Q ss_pred HHHHHHCCCCccceEEcCCCCceEEEEEEe-cCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHH
Q 025807 94 ANILKENNVDTSGVRYDSTARTALAFVTLR-ADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRS 172 (248)
Q Consensus 94 ~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 172 (248)
++.|+++||+++++.+.++.+|+++++.++ .++.+.+.+++..+++..+.+++++...+++++++|++++.+.++...+
T Consensus 205 ~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh~~~~~l~~~~~~~ 284 (496)
T PLN02543 205 VLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNLAVLKEARMFHFNSEVLTSPSMQS 284 (496)
T ss_pred HHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCHhHhCCCceEEECChhhcCchHHH
Confidence 999999999999999988889999999985 2333555544446677778888887778899999999998766665678
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 173 TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 173 ~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
....+++.++++|++|+||++.|+.+|.+.+..++.+.++++++||+++|++|++.|+|.
T Consensus 285 a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~ 344 (496)
T PLN02543 285 TLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDE 344 (496)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCC
Confidence 889999999999999999999999999888788888999999999999999999999874
No 2
>PLN02323 probable fructokinase
Probab=100.00 E-value=6.6e-32 Score=231.87 Aligned_cols=206 Identities=77% Similarity=1.199 Sum_probs=180.5
Q ss_pred CCccEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccc
Q 025807 27 YDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (248)
Q Consensus 27 ~~~~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~ 106 (248)
+.++|+++|++++|+++.+++.|......+...+||+++|+|.+|++||.++.++|.||+|.+|+.+++.|++.||++++
T Consensus 9 ~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~ 88 (330)
T PLN02323 9 ESSLVVCFGEMLIDFVPTVSGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGVNNEG 88 (330)
T ss_pred CCCcEEEechhhhhhccCCCCCCcccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCCCCcc
Confidence 35779999999999999888777655667789999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCC
Q 025807 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS 186 (248)
Q Consensus 107 v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~ 186 (248)
+.+.++.+|+.+++.++++|+|++++++..+++..+++++++.+.++.++++|++++.+..+........+++.++++|+
T Consensus 89 v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~ 168 (330)
T PLN02323 89 VRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGA 168 (330)
T ss_pred eEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHHHHHHHHHHHHHHcCC
Confidence 98888889999999988899999888754566656777777766788999999998766555555667789999999999
Q ss_pred eEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 187 ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 187 ~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+|++|++.+...|.+....++.+.++++++|++++|++|+..++|.
T Consensus 169 ~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~ 214 (330)
T PLN02323 169 LLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGG 214 (330)
T ss_pred EEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCC
Confidence 9999999988888777777888999999999999999999999873
No 3
>PLN02967 kinase
Probab=100.00 E-value=5.9e-32 Score=242.29 Aligned_cols=203 Identities=34% Similarity=0.568 Sum_probs=177.1
Q ss_pred CccEEEEcceeeeeccCCCCcc--------------cccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHH
Q 025807 28 DRLVVCFGEMLIDFVPTVGGVS--------------LAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYML 93 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~~p--------------~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i 93 (248)
.+.|+|||++.+|+++.....- ...+..+...+||+++|+|.+|++||.++.|+|.||+|.+|+.+
T Consensus 196 ~~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~l 275 (581)
T PLN02967 196 PPLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAM 275 (581)
T ss_pred CCeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 4569999999999977421110 11345677889999999999999999999999999999999999
Q ss_pred HHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHH
Q 025807 94 ANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRST 173 (248)
Q Consensus 94 ~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 173 (248)
++.|+++||+++++.+.++.+|+.+++.++++|++++.+ +.++++..+.++++....+++++++|++++.+.++...+.
T Consensus 276 l~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~-~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~a 354 (581)
T PLN02967 276 LYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTC-VKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRST 354 (581)
T ss_pred HHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEE-ecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHH
Confidence 999999999999998888889999999999899988764 3367777788887777778999999999987666667788
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
+..+++.++++|++|+||++.++++|.+.+.+++.+.++++++||+++|++|+..|+|
T Consensus 355 ll~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG 412 (581)
T PLN02967 355 TLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCG 412 (581)
T ss_pred HHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhC
Confidence 9999999999999999999999999987777788899999999999999999999987
No 4
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.97 E-value=4.5e-29 Score=219.00 Aligned_cols=212 Identities=16% Similarity=0.178 Sum_probs=173.3
Q ss_pred ccccccccCCCCCCCccEEEEcceeeeeccCCCCc-------ccc-----------------cCCC--ccccCCChHHHH
Q 025807 14 KDLSASMDGGSGAYDRLVVCFGEMLIDFVPTVGGV-------SLA-----------------EAPA--FKKAPGGAPANV 67 (248)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ilviG~~~vD~~~~~~~~-------p~~-----------------~~~~--~~~~~GG~a~N~ 67 (248)
-++++..++++++.+.+|+++|+..+|+...++.. ++. .... ....+||+++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNt 98 (434)
T PRK15074 19 DPLLQQIQPENETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNT 98 (434)
T ss_pred CccccccccccCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHH
Confidence 35678889999999999999999999999877531 110 0001 355699999999
Q ss_pred HHHHHHcC-CceeEEEeeCCC-HHHHHHHHHHH--HCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccC
Q 025807 68 AVGISRLG-GSSAFVGKLGDD-EFGYMLANILK--ENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLC 143 (248)
Q Consensus 68 a~ala~lG-~~v~l~~~vG~D-~~g~~i~~~L~--~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~ 143 (248)
|.+|++|| .++.++|.||+| .+|+++++.|+ +.||+++++...+ .+|+.++++++++|+|+++++ .++...++
T Consensus 99 A~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~t~--~GA~~~Lt 175 (434)
T PRK15074 99 LHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFAIS--PGHMNQLR 175 (434)
T ss_pred HHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEEEe--cChhhcCC
Confidence 99999995 999999999999 79999999997 6899999986654 589999999999999999988 57777888
Q ss_pred cccchHhhhcCccEEEEcccccc---cchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEE
Q 025807 144 ESELDKNLIKQGSIFHYGSISLI---AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 220 (248)
Q Consensus 144 ~~~~~~~~~~~~~~v~~~g~~~~---~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~ 220 (248)
+++++.+.+++++++|++|+.+. .+...++...+++.|+++|++|++|++.+...|...+.+ ...+++++|+++
T Consensus 176 ~edld~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~---~e~l~~~vDILf 252 (434)
T PRK15074 176 PESIPEDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWW---QEFLKEHVSILA 252 (434)
T ss_pred hhHCCHhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHH---HHHHHhcCCEEE
Confidence 88888778999999999998664 224467888999999999999999999765444332222 234567999999
Q ss_pred eCHHHHHHhHH
Q 025807 221 VKFETRYSCIQ 231 (248)
Q Consensus 221 ~N~~E~~~l~g 231 (248)
+|++|+..|+|
T Consensus 253 ~NeeEa~~LtG 263 (434)
T PRK15074 253 MNEDEAEALTG 263 (434)
T ss_pred cCHHHHHHHhC
Confidence 99999999987
No 5
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.97 E-value=1.3e-28 Score=208.18 Aligned_cols=198 Identities=53% Similarity=0.897 Sum_probs=164.7
Q ss_pred cEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
+|+|+|++++|++...++. +......+||+++|+|.++++||.++.+++.+|+|.+|+.+++.|++.||++.++.+
T Consensus 1 ~ilviG~~~~D~~~~~~~~----~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~ 76 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA----PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQF 76 (295)
T ss_pred CEEEEcceeEEEecCCCCC----CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCchheee
Confidence 5999999999999876643 456688999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEE
Q 025807 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (248)
Q Consensus 110 ~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~ 189 (248)
.++.+|+++++.++++|+|++.+.+..........+ +..+.+++++++|++++...++...+.+.++++.+++.|++++
T Consensus 77 ~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 155 (295)
T cd01167 77 DPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTE-LNPDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLIS 155 (295)
T ss_pred cCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCcc-CChhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEE
Confidence 777899999999988899998876432222111211 3445678999999988755455556778899999999999999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 190 ~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+|++.+...|......++.+.++++++|++++|+.|++.+++.
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~ 198 (295)
T cd01167 156 FDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGE 198 (295)
T ss_pred EcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCC
Confidence 9999876678665556777889999999999999999999874
No 6
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.97 E-value=1.7e-28 Score=207.16 Aligned_cols=208 Identities=36% Similarity=0.526 Sum_probs=170.0
Q ss_pred cEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
+|+|+|++++|++...++.. ..+......+||++.|+|.+|++||.++.++|.||+|.+|+.+++.|++.||+++++.+
T Consensus 1 ~i~~iG~~~iD~~~~~~~~~-~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~ 79 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGGRL-EQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRV 79 (294)
T ss_pred CeEEechhheeeecCCCCcc-chhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEE
Confidence 48999999999998765332 34566778999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccc-cchhHHHHHHHHHHHHHCCCeE
Q 025807 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLI-AEPCRSTQLAAMNLAKESGSIL 188 (248)
Q Consensus 110 ~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~-~~~~~~~~~~~~~~a~~~g~~v 188 (248)
.++.+|+.+++.++++|+|++.+++..++...++.+.++...+++++++|++++... .+...+.+.+++++++++++++
T Consensus 80 ~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (294)
T cd01166 80 DPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTV 159 (294)
T ss_pred eCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEE
Confidence 788899999999887889988877544555556666665567889999999987532 2222477889999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH----HHHHHHh
Q 025807 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK----MLLHWYR 239 (248)
Q Consensus 189 ~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~----~~~~~~~ 239 (248)
++||+.+...|. .+..++.+..+++++|++++|+.|++.+++. .+.++++
T Consensus 160 ~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 213 (294)
T cd01166 160 SFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERAL 213 (294)
T ss_pred EECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHH
Confidence 999987654443 3445667788999999999999999999874 4455544
No 7
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.97 E-value=1.1e-28 Score=209.61 Aligned_cols=196 Identities=41% Similarity=0.675 Sum_probs=164.9
Q ss_pred CccEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccce
Q 025807 28 DRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v 107 (248)
+++|+++|++++|+++.. .......+||+++|+|.+|++||.++.+++.||+|.+|+.+++.|+++||++.++
T Consensus 2 ~~~il~iG~~~iD~~~~~-------~~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~ 74 (304)
T PRK09434 2 MNKVWVLGDAVVDLIPEG-------ENRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVDTTYL 74 (304)
T ss_pred CCcEEEecchheeeecCC-------CCceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCCCcce
Confidence 457999999999998542 1234568999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCe
Q 025807 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI 187 (248)
Q Consensus 108 ~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~ 187 (248)
.+.++.+|+.+++.++++|+|++.+...+++...++.++++ .+++++++|++++.+..+...+...+++++++++|++
T Consensus 75 ~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (304)
T PRK09434 75 RLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGF 152 (304)
T ss_pred EEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCE
Confidence 88888899999999887899987665444554444554443 3678999999987665555556777899999999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 188 LSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 188 v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++|++.+...|.+.+.+++.+.++++++|++++|++|+..++|.
T Consensus 153 v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~ 197 (304)
T PRK09434 153 VSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGT 197 (304)
T ss_pred EEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCC
Confidence 999999887778777777888899999999999999999999873
No 8
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.96 E-value=1.1e-28 Score=210.25 Aligned_cols=194 Identities=26% Similarity=0.322 Sum_probs=163.2
Q ss_pred ccEEEEcceeeeeccCCCCcccc----------cC-----------CCccccCCChHHHHHHHHHHcCCceeEEEeeCCC
Q 025807 29 RLVVCFGEMLIDFVPTVGGVSLA----------EA-----------PAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDD 87 (248)
Q Consensus 29 ~~ilviG~~~vD~~~~~~~~p~~----------~~-----------~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D 87 (248)
.+|+++|++++|++..+++.|.. .+ ......+||+++|+|.+|++||.++.++|.||+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 45999999999999999988732 11 1357889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEccccccc
Q 025807 88 EFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIA 167 (248)
Q Consensus 88 ~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 167 (248)
.+|+.+++.|+++||+++++... +.+|+.++++++++|+|+++.+ .+++..++++++..+.+++++++|++++.+.
T Consensus 82 ~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~- 157 (312)
T cd01168 82 KLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTY--LGAANELSPDDLDWSLLAKAKYLYLEGYLLT- 157 (312)
T ss_pred hhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecc--cchhhcCChhHCCHHHHccCCEEEEEEEecC-
Confidence 99999999999999999988754 5699999999998999998766 5666677777777777899999999987432
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 168 EPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 168 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
.+.+.+..+++.++++|+++++|++.. | ..+.+++.+.++++++|++++|++|++.+++
T Consensus 158 -~~~~~~~~~~~~a~~~g~~v~~d~~~~---~-~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 158 -VPPEAILLAAEHAKENGVKIALNLSAP---F-IVQRFKEALLELLPYVDILFGNEEEAEALAE 216 (312)
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEeCCcH---H-HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhC
Confidence 223788899999999999999999641 1 1233456688899999999999999999988
No 9
>PRK11142 ribokinase; Provisional
Probab=99.96 E-value=2.2e-28 Score=207.86 Aligned_cols=187 Identities=23% Similarity=0.270 Sum_probs=158.5
Q ss_pred CccEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCC
Q 025807 28 DRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~ 103 (248)
|.+|+|+|++++|++..++++|.+ .+......+||++.|+|.+|++||.++.++|.+|+|++|+.+++.|+++||+
T Consensus 2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 81 (306)
T PRK11142 2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGID 81 (306)
T ss_pred CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCC
Confidence 456999999999999998887664 3456678899999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH--hhhcCccEEEEcccccccchhHHHHHHHHHHH
Q 025807 104 TSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (248)
Q Consensus 104 ~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 181 (248)
++++.+.++.+|+.++++++++|+|++..+ .++...++++.++. +.+++++++|+++. .+.+.+..+++.+
T Consensus 82 ~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~~~a 154 (306)
T PRK11142 82 TAPVSVIKGESTGVALIFVNDEGENSIGIH--AGANAALTPALVEAHRELIANADALLMQLE-----TPLETVLAAAKIA 154 (306)
T ss_pred hhhEEEcCCCCCCEEEEEECCCCCEEEEEe--CCccccCCHHHHHHHHhhhccCCEEEEeCC-----CCHHHHHHHHHHH
Confidence 999988888899999999988899998876 45555666666542 45789999998753 2456778899999
Q ss_pred HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 182 ~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
+++|+++++|++.... ....+++++|++++|++|++.+++
T Consensus 155 ~~~g~~v~~d~~~~~~----------~~~~~~~~~dil~~n~~Ea~~l~g 194 (306)
T PRK11142 155 KQHGTKVILNPAPARE----------LPDELLALVDIITPNETEAEKLTG 194 (306)
T ss_pred HHcCCEEEEECCCCcc----------cCHHHHhhCCEEcCCHHHHHHHhC
Confidence 9999999999975322 124678899999999999999987
No 10
>PTZ00292 ribokinase; Provisional
Probab=99.96 E-value=8.1e-28 Score=206.21 Aligned_cols=196 Identities=27% Similarity=0.298 Sum_probs=163.3
Q ss_pred CCCCccEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHC
Q 025807 25 GAYDRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKEN 100 (248)
Q Consensus 25 ~~~~~~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~ 100 (248)
+-.+++|+|+|++++|++..++++|.+ .++.+...+||+++|+|.+|++||.++.+++.||+|++|+.+++.|++.
T Consensus 12 ~~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~ 91 (326)
T PTZ00292 12 GEAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRN 91 (326)
T ss_pred CCCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHc
Confidence 335678999999999999998887664 3445678899999999999999999999999999999999999999999
Q ss_pred CCCccceEEcCCCCceEEEEEEe-cCCCceEEEecCCCcccccCcccchH--hhhcC-ccEEEEcccccccchhHHHHHH
Q 025807 101 NVDTSGVRYDSTARTALAFVTLR-ADGEREFLFFRHPSADMLLCESELDK--NLIKQ-GSIFHYGSISLIAEPCRSTQLA 176 (248)
Q Consensus 101 gI~~~~v~~~~~~~T~~~~i~i~-~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~v~~~g~~~~~~~~~~~~~~ 176 (248)
||+++++.+.++.+|+.++++++ .+|+|+++++ .+++..++++.++. ..+.+ ++++++++ ..+.+...+
T Consensus 92 GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~ 164 (326)
T PTZ00292 92 GVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVII--PGANNALTPQMVDAQTDNIQNICKYLICQN-----EIPLETTLD 164 (326)
T ss_pred CCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEe--CCccccCCHHHHHHHHHHhhhhCCEEEECC-----CCCHHHHHH
Confidence 99999997777789999999998 7899998876 45666677766653 34566 89988764 234567778
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 177 AMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 177 ~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++.++++|+++++|++++...|. .+.+.++++++|++++|++|++.++|.
T Consensus 165 ~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~ 215 (326)
T PTZ00292 165 ALKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGM 215 (326)
T ss_pred HHHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCC
Confidence 999999999999999987654332 256788999999999999999999873
No 11
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=8e-28 Score=212.05 Aligned_cols=199 Identities=18% Similarity=0.202 Sum_probs=161.6
Q ss_pred CCCccEEEEcceeeeeccCCCC-------cccc-----------------cCCCccccCCChHHHHHHHHHHcC------
Q 025807 26 AYDRLVVCFGEMLIDFVPTVGG-------VSLA-----------------EAPAFKKAPGGAPANVAVGISRLG------ 75 (248)
Q Consensus 26 ~~~~~ilviG~~~vD~~~~~~~-------~p~~-----------------~~~~~~~~~GG~a~N~a~ala~lG------ 75 (248)
+.+++|+++|++++|++..+++ +|.. .+......+||+++|+|.+|++||
T Consensus 67 ~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~ 146 (426)
T PLN02813 67 PERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAG 146 (426)
T ss_pred CCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccC
Confidence 4689999999999999999887 6643 233456889999999999999999
Q ss_pred --CceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhc
Q 025807 76 --GSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIK 153 (248)
Q Consensus 76 --~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (248)
.+|.++|.||+|.+|+.+++.|+++||++.++.+ .+.+|+.++++++++|+|+++.+ .+++..++.+.+..+.++
T Consensus 147 ~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii~~--~Ga~~~l~~~~~~~~~i~ 223 (426)
T PLN02813 147 PALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTMLSY--QGTSSTVNYDSCLASAIS 223 (426)
T ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceeeec--cCchhhCCccccCHHHHh
Confidence 7999999999999999999999999999998764 45699999999999999999887 455555666656556789
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHH-HHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAARE-GIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~-~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
+++++|++++.+..+...+.+.++++.++++|+++++|++.... ...+++ ....+++++|++++|++|+..++|
T Consensus 224 ~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~----~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g 298 (426)
T PLN02813 224 KSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSC----IERHRDDFWDVMGNYADILFANSDEARALCG 298 (426)
T ss_pred cCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcch----hhhhHHHHHHHHHhcCCEEEeCHHHHHHHhC
Confidence 99999999875432333477889999999999999999875211 111232 334566899999999999999986
No 12
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=5.4e-28 Score=203.86 Aligned_cols=193 Identities=18% Similarity=0.246 Sum_probs=157.3
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
+|+++|++++|++..++++|.. ........+|| +.|+|.+|++||.++.++|.||+|.+|+.+++.|++.||+++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 79 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEIL 79 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCccc
Confidence 4899999999999998877654 34567899999 999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEccccccc-chhHHHHHHHHHHHHHC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIA-EPCRSTQLAAMNLAKES 184 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~~~~~~~~~~a~~~ 184 (248)
++.+. +..|+.++++++++|+|+++.+ .+++..++++.++...+.+++++|++++.+.. ......+.++++.++ .
T Consensus 80 ~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (289)
T cd01944 80 LPPRG-GDDGGCLVALVEPDGERSFISI--SGAEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILLEWLEALP-A 155 (289)
T ss_pred ccccc-CCCCeEEEEEEcCCCceEEEEe--CCccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-C
Confidence 88764 5688888888888899998877 34454555555543346789999999986532 224566667776644 5
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 185 GSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 185 g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
++++++|++++...|. .+.++++++++|++++|++|++.|+|.
T Consensus 156 ~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~ 198 (289)
T cd01944 156 GTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAER 198 (289)
T ss_pred CCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCC
Confidence 7999999998765553 356788999999999999999999984
No 13
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.96 E-value=1.3e-27 Score=201.75 Aligned_cols=186 Identities=28% Similarity=0.367 Sum_probs=156.5
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
+|+|+|++++|++..+++.|.. .+......+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVS 80 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCce
Confidence 4999999999999988876654 445667899999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH--hhhcCccEEEEcccccccchhHHHHHHHHHHHHH
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~ 183 (248)
++.+.++.+|+.++++++.+|+|+++.+ .++...++++.++. +.+++++++|+++. .+.+.+..+++.+++
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~a~~ 153 (292)
T cd01174 81 YVEVVVGAPTGTAVITVDESGENRIVVV--PGANGELTPADVDAALELIAAADVLLLQLE-----IPLETVLAALRAARR 153 (292)
T ss_pred EEEEcCCCCceeEEEEEcCCCceEEEEe--CCCCCCCCHHHHHHHHHhcccCCEEEEeCC-----CCHHHHHHHHHHHHh
Confidence 9977777899999999988899998876 44555555554443 45789999998752 345678889999999
Q ss_pred CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 184 ~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+|+++++|++.... ...++++++|++++|++|++.+++.
T Consensus 154 ~g~~v~~D~~~~~~----------~~~~~~~~~dil~~n~~E~~~l~~~ 192 (292)
T cd01174 154 AGVTVILNPAPARP----------LPAELLALVDILVPNETEAALLTGI 192 (292)
T ss_pred cCCEEEEeCCCcCc----------CcHHHHhhCCEEeeCHHHHHHHhCC
Confidence 99999999986432 1256889999999999999999874
No 14
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=1.5e-27 Score=212.92 Aligned_cols=204 Identities=20% Similarity=0.265 Sum_probs=159.8
Q ss_pred CCccEEEEcceeeeeccCCCCcccccC---------------CCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHH
Q 025807 27 YDRLVVCFGEMLIDFVPTVGGVSLAEA---------------PAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGY 91 (248)
Q Consensus 27 ~~~~ilviG~~~vD~~~~~~~~p~~~~---------------~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~ 91 (248)
+|++|+++|++++|++..++++|.+.. .......|| ++|+|.+|++||.++.++|.||+|.+|+
T Consensus 71 ~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G~ 149 (470)
T PLN02341 71 KEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYGK 149 (470)
T ss_pred ccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHHH
Confidence 478999999999999999999887521 223445677 6999999999999999999999999999
Q ss_pred HHHHHHHHCCCCccceEEcC--------CCCceEEEEEEecCCCceEEEecCCCcccc---cC-cccchHhhhcCccEEE
Q 025807 92 MLANILKENNVDTSGVRYDS--------TARTALAFVTLRADGEREFLFFRHPSADML---LC-ESELDKNLIKQGSIFH 159 (248)
Q Consensus 92 ~i~~~L~~~gI~~~~v~~~~--------~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~v~ 159 (248)
.+++.|+++||+++++...+ +..|+.++++++++|+++++.......... +. ......+.++++|++|
T Consensus 150 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv~ 229 (470)
T PLN02341 150 FLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKALF 229 (470)
T ss_pred HHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCEEE
Confidence 99999999999999887654 357999999999889887654211111110 00 0011124578999999
Q ss_pred EcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCC-CCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 160 YGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL-PLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
++++.. .+.+.+.+..+++.++++|++|++|++++. .+|.+.+..++.+.++++++|++++|++|++.++|.
T Consensus 230 lsg~~~-~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~ 302 (470)
T PLN02341 230 CNGYVF-DELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGI 302 (470)
T ss_pred EeceeC-CcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCC
Confidence 999854 345678889999999999999999998764 345555555667889999999999999999999873
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.6e-27 Score=203.12 Aligned_cols=194 Identities=38% Similarity=0.557 Sum_probs=168.4
Q ss_pred cEEEEcceeeeeccC-CCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 30 LVVCFGEMLIDFVPT-VGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 30 ~ilviG~~~vD~~~~-~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
+|+++|++++|++.. .+.+|.. ........+||++.|+|+++++||.++.++|.||+|.+|+.+++.|++.||++
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~ 80 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDT 80 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 489999999999986 5555543 22235678999899999999999999999999999999999999999999999
Q ss_pred cceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHC
Q 025807 105 SGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES 184 (248)
Q Consensus 105 ~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~ 184 (248)
+++....+.+|+.+++.++++|+|.+.+++.. +...++++.+++..+..++++|++++.+.... +....+++.+++.
T Consensus 81 ~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~ 157 (311)
T COG0524 81 SHVVTDEGATTGLALILVDEDGERTFVFYRGA-AALLLTPEDLDEDELAGADVLHISGIQLEIPP--EALLAALELAKAA 157 (311)
T ss_pred ceEEEcCCCcceEEEEEEcCCCceeEEEECCc-ccccCChHHcChHHHhhcCeeeEEEeecCCCh--HHHHHHHHHHHHc
Confidence 99988877799999999998899999998543 56667777777667889999999998654322 8889999999999
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 185 GSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 185 g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
|.++++|++.++..|. ++.+.++++++|++++|++|++.++|
T Consensus 158 g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g 199 (311)
T COG0524 158 GVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTG 199 (311)
T ss_pred CCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhC
Confidence 9999999999988775 56888999999999999999999988
No 16
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=1.6e-27 Score=199.95 Aligned_cols=182 Identities=26% Similarity=0.340 Sum_probs=153.2
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
+|+++|++++|++..++++|.. ........+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTS 80 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCcc
Confidence 5899999999999988888753 456778999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
++...++.+|+.++++++.+++|++... .++...+++++ ....+++++++|+++.. .+..+++.++++|
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g 149 (279)
T cd01942 81 HVRVVDEDSTGVAFILTDGDDNQIAYFY--PGAMDELEPND-EADPDGLADIVHLSSGP--------GLIELARELAAGG 149 (279)
T ss_pred ceEEcCCCCcceEEEEEcCCCCEEEEec--CCcccccccCC-chhhhcccCEEEeCCch--------HHHHHHHHHHHcC
Confidence 9977677789999999988888887755 45555555554 34567899999999862 4567888888899
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRY 227 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~ 227 (248)
+++++|++.+...|. .+.+..+++++|++++|++|+.
T Consensus 150 ~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~ 186 (279)
T cd01942 150 ITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAE 186 (279)
T ss_pred CeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHH
Confidence 999999987654443 3557788999999999999994
No 17
>PTZ00247 adenosine kinase; Provisional
Probab=99.95 E-value=1.9e-27 Score=205.42 Aligned_cols=194 Identities=20% Similarity=0.234 Sum_probs=157.7
Q ss_pred CccEEEEcceeeeeccCCCC------cccc------------------cCCCccccCCChHHHHHHHHHHcC---C-cee
Q 025807 28 DRLVVCFGEMLIDFVPTVGG------VSLA------------------EAPAFKKAPGGAPANVAVGISRLG---G-SSA 79 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~------~p~~------------------~~~~~~~~~GG~a~N~a~ala~lG---~-~v~ 79 (248)
.++|+++|++++|++..+++ .|.. ........+||+++|+|.++++|| . ++.
T Consensus 5 ~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v~ 84 (345)
T PTZ00247 5 PKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFVC 84 (345)
T ss_pred CceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcEE
Confidence 57899999999999998874 2322 112347889999999999999885 5 899
Q ss_pred EEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH----hhhcCc
Q 025807 80 FVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK----NLIKQG 155 (248)
Q Consensus 80 l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (248)
++|.||+|.+|+.+++.|+++||+++++. .++.+|++++++++ +++|+++.+ .+++..+++++++. +.++++
T Consensus 85 ~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~-~~~r~~~~~--~ga~~~l~~~~i~~~~~~~~l~~~ 160 (345)
T PTZ00247 85 YVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVC-GKERSLVAN--LGAANHLSAEHMQSHAVQEAIKTA 160 (345)
T ss_pred EEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEc-CCCcccccC--cchhhcCChHHcCcHHHHHHHhhC
Confidence 99999999999999999999999998875 56779999999887 479988776 56777777776653 257899
Q ss_pred cEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 156 ~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
+++|++++.+. .+.+.+..+++.++++|+++++|++... | ....++.+.++++++|++++|++|++.|+|
T Consensus 161 ~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~~~--~--~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 161 QLYYLEGFFLT--VSPNNVLQVAKHARESGKLFCLNLSAPF--I--SQFFFERLLQVLPYVDILFGNEEEAKTFAK 230 (345)
T ss_pred CEEEEEEEEec--ccHHHHHHHHHHHHHcCCEEEEECCcHH--H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhh
Confidence 99999987432 2568888999999999999999986421 1 122345678899999999999999999998
No 18
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.94 E-value=6.8e-26 Score=196.65 Aligned_cols=197 Identities=24% Similarity=0.254 Sum_probs=157.8
Q ss_pred CCCCCccEEEEc-ceeeeeccCCCCc-------ccc-----------------c---------CCCccccCCChHHHHHH
Q 025807 24 SGAYDRLVVCFG-EMLIDFVPTVGGV-------SLA-----------------E---------APAFKKAPGGAPANVAV 69 (248)
Q Consensus 24 ~~~~~~~ilviG-~~~vD~~~~~~~~-------p~~-----------------~---------~~~~~~~~GG~a~N~a~ 69 (248)
.+|++++|+++| +..+|+...++.. ++- . .......+||+++|++.
T Consensus 15 ~~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~ 94 (367)
T PLN02379 15 DGPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIR 94 (367)
T ss_pred CCCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHH
Confidence 456788999999 9999999776521 100 0 11256779999999999
Q ss_pred HHHH-cCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch
Q 025807 70 GISR-LGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD 148 (248)
Q Consensus 70 ala~-lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~ 148 (248)
+|++ ||.++.++|.||+|.+|+++++.|++.||++.++.+ .+.+|++++++++++|+|++..+ .+....++++++.
T Consensus 95 ~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~-~~~~Tg~~~v~v~~dgert~~~~--lg~~~~l~~~~~~ 171 (367)
T PLN02379 95 GLSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRA-KKGPTAQCVCLVDALGNRTMRPC--LSSAVKLQADELT 171 (367)
T ss_pred HHHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCccc-CCCCCceEEEEECCCCCccccCC--ccccccCChhHCC
Confidence 9996 999999999999999999999999999999988855 34589999999999999998654 4455556677777
Q ss_pred HhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh--hCCEEEeCHHHH
Q 025807 149 KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVKFETR 226 (248)
Q Consensus 149 ~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~--~~dil~~N~~E~ 226 (248)
.+.+++++++|++ +.. .+.+.+.++++.++++|++|++|++.... .+.+++.+.++++ ++|++|+|++|+
T Consensus 172 ~~~~~~~~~v~v~-~~~---~~~~~~~~~~~~A~~~g~~v~lD~s~~~~----v~~~r~~l~~ll~~~~vDilf~Ne~Ea 243 (367)
T PLN02379 172 KEDFKGSKWLVLR-YGF---YNLEVIEAAIRLAKQEGLSVSLDLASFEM----VRNFRSPLLQLLESGKIDLCFANEDEA 243 (367)
T ss_pred HHHHhcCCEEEEE-ccc---CCHHHHHHHHHHHHHcCCEEEEeccchhh----hhhhhHHHHHHhhcCCccEEEcCHHHH
Confidence 6778999999999 433 23678889999999999999999975311 1234566777775 899999999999
Q ss_pred HHhHH
Q 025807 227 YSCIQ 231 (248)
Q Consensus 227 ~~l~g 231 (248)
+.+++
T Consensus 244 ~~l~~ 248 (367)
T PLN02379 244 RELLR 248 (367)
T ss_pred HHHhc
Confidence 99985
No 19
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=4.2e-26 Score=189.11 Aligned_cols=206 Identities=51% Similarity=0.784 Sum_probs=182.1
Q ss_pred CCccEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCC
Q 025807 27 YDRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNV 102 (248)
Q Consensus 27 ~~~~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI 102 (248)
.++.|+|+|+.++|+.+.+.++|.. .+..+...+||.++|+|++++|||.++.|+|+||+|.||+.++..|++.||
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V 87 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGV 87 (330)
T ss_pred CCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCc
Confidence 3678999999999999999999887 788899999999999999999999999999999999999999999999999
Q ss_pred CccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHH
Q 025807 103 DTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK 182 (248)
Q Consensus 103 ~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~ 182 (248)
+++++....+.+|+.+.+.+..+|++.+...+++.....+.+.++..+.++.++++|+.+..+............++.++
T Consensus 88 ~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~ 167 (330)
T KOG2855|consen 88 DTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAK 167 (330)
T ss_pred ccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhh
Confidence 99999999999999999999999999998886555555555567777889999999999887766555554445567888
Q ss_pred HCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 183 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 183 ~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+.|-.++.||+.+.++|+.....++.+..++..+|++...++|+..++|.
T Consensus 168 ~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~ 217 (330)
T KOG2855|consen 168 NAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGI 217 (330)
T ss_pred cccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccC
Confidence 88888999999999999988777888899999999999999999998754
No 20
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.94 E-value=4.2e-26 Score=193.10 Aligned_cols=196 Identities=34% Similarity=0.507 Sum_probs=162.5
Q ss_pred CccEEEEcceeeeeccCCCCc--ccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 28 DRLVVCFGEMLIDFVPTVGGV--SLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~~--p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
|.+|+++|++++|++..++.. ...........+||++.|+|.+|++||.++.+++.+|+|.+|+.+++.|++.||+++
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~ 80 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRFKGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVDTS 80 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSHTTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEEET
T ss_pred CCcEEEECccceEEEeecCCcCCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccccccccc
Confidence 456999999999999988763 111566778999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
++.+.++.+|++++++++++|+|++..+ .+.....+.+.+....+.+++++|+++..+....+......+.+.+++.+
T Consensus 81 ~i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
T PF00294_consen 81 YIPRDGDEPTGRCLIIVDPDGERTFVFS--PGANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNG 158 (301)
T ss_dssp TEEEESSSEEEEEEEEEETTSEEEEEEE--EGGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTT
T ss_pred ccccccccccceeEeeecccccceeeec--cccccccccccccccccccccceeecccccccccccceeeeccccccccc
Confidence 9998888899999999998899999887 45555556655556788999999999933455566777778888888877
Q ss_pred --CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHHH
Q 025807 186 --SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQKM 233 (248)
Q Consensus 186 --~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~ 233 (248)
.+++.++. |.+ +++.+.++++++|++++|++|+..+++..
T Consensus 159 ~~~~~~~~~~-----~~~---~~~~~~~~l~~~dil~~n~~E~~~l~~~~ 200 (301)
T PF00294_consen 159 PFDPVFRDPS-----WDD---LREDLKELLPYADILKPNEEEAEALTGSK 200 (301)
T ss_dssp EEEEEEEGGG-----SHH---HHHHHHHHHHTSSEEEEEHHHHHHHHTCS
T ss_pred cccccccccc-----ccc---cchhhhhhccccchhcccccccccccccc
Confidence 34555554 321 57888999999999999999999998863
No 21
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.94 E-value=1.4e-25 Score=188.58 Aligned_cols=185 Identities=21% Similarity=0.251 Sum_probs=151.3
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
+|+++|++++|++..++++|.. .+......+||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 80 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTS 80 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCcc
Confidence 4899999999999998877654 445678999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
++.+.++.+|+++++ ...++++++..+. +....+..+.++...+++++++|++++. .+...++++.++++|
T Consensus 81 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~i~~~~------~~~~~~~~~~~~~~g 151 (284)
T cd01945 81 FIVVAPGARSPISSI-TDITGDRATISIT--AIDTQAAPDSLPDAILGGADAVLVDGRQ------PEAALHLAQEARARG 151 (284)
T ss_pred ceeecCCCCCccEEE-EccCCCceEEEec--CCCCCCCcccCCHHHhCcCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 998877778888876 4456777776652 3344455566666668999999999862 256778999999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++.+|+.+... ++ +.++++++|++++|++|++.+++.
T Consensus 152 ~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~ 189 (284)
T cd01945 152 IPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGS 189 (284)
T ss_pred CCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCC
Confidence 987777754321 22 677889999999999999998764
No 22
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.94 E-value=1.9e-25 Score=188.47 Aligned_cols=182 Identities=19% Similarity=0.222 Sum_probs=146.0
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
.|+|+|++++|++..++++|.. ........+||+++|+|.+|++||.++.++|.||+|++|+.+++.|++.||+++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~ 80 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDIS 80 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCcee
Confidence 3899999999999999988875 234557889999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
++.+.++..++.++++++++|+|++++++ ++...++.++++...++++|++|++++.. ....++++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~ 152 (290)
T cd01939 81 HCYRKDIDEPASSYIIRSRAGGRTTIVND--NNLPEVTYDDFSKIDLTQYGWIHFEGRNP------DETLRMMQHIEEHN 152 (290)
T ss_pred eeeEcCCCCCeeEEEEEcCCCCeEEEEeC--CCCCCCCHHHHhhhhhccCCEEEEeccCH------HHHHHHHHHHHHhc
Confidence 98666555566677777778899888763 44555666666655568999999998632 33456777777766
Q ss_pred -------CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 186 -------SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 186 -------~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
+++++|++.. .+.+.++++++|++++|++|++.+
T Consensus 153 ~~~~~~~~~v~~d~~~~----------~~~~~~~l~~~di~~~n~~~~~~~ 193 (290)
T cd01939 153 NRRPEIRITISVEVEKP----------REELLELAAYCDVVFVSKDWAQSR 193 (290)
T ss_pred CcCCCcceEEEEEeccC----------chhhhhHHhhCCEEEEEhHHHHhc
Confidence 6899998643 123458899999999999988765
No 23
>PRK09850 pseudouridine kinase; Provisional
Probab=99.93 E-value=7.1e-25 Score=186.99 Aligned_cols=189 Identities=16% Similarity=0.135 Sum_probs=147.8
Q ss_pred CCccEEEEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCC
Q 025807 27 YDRLVVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (248)
Q Consensus 27 ~~~~ilviG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~ 103 (248)
++++|+|+|++++|++...+..+.. ........+||+++|+|.+|++||.++.++|.||+|.+|+.+++.|++.||+
T Consensus 3 ~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gVd 82 (313)
T PRK09850 3 EKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVY 82 (313)
T ss_pred CCCcEEEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCCC
Confidence 4678999999999999775432221 2345678899999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch--HhhhcCccEEEEcccccccchhHHHHHHHHHHH
Q 025807 104 TSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (248)
Q Consensus 104 ~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 181 (248)
++++.+.++.+|++++++++++|++++.+.+ .++...+..+.+. .+.+++++++|+++. .+.+....+++++
T Consensus 83 ~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~ 156 (313)
T PRK09850 83 VDKCLIVPGENTSSYLSLLDNTGEMLVAIND-MNISNAITAEYLAQHREFIQRAKVIVADCN-----ISEEALAWILDNA 156 (313)
T ss_pred chheeecCCCCceEEEEEecCCCCEEEEecC-chHhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHHHHhc
Confidence 9998777777899999999988999876642 3444444444333 235788999998753 2345555666543
Q ss_pred HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 182 ~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
+|+++++|++.. |. ...+.++++++|++++|++|+..++|
T Consensus 157 --~g~~v~~D~~~~---~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g 196 (313)
T PRK09850 157 --ANVPVFVDPVSA---WK-----CVKVRDRLNQIHTLKPNRLEAETLSG 196 (313)
T ss_pred --cCCCEEEEcCCH---HH-----HHHHHhhhccceEEccCHHHHHHHhC
Confidence 589999999752 31 13456788999999999999999987
No 24
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.93 E-value=1.9e-24 Score=180.08 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=144.0
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
+|+++|++++|++..+++.|.+ ........+||+++|+|.+|++||.++.++|.||+|.+|+.+++.|++ ++++.
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~ 79 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKH 79 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcc
Confidence 5899999999999998877654 456788999999999999999999999999999999999999999999 99998
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
++... +..|+.++++++++|+|++.+.. ... .+++..+.++++|++|+++.. ...++++.+++++
T Consensus 80 ~~~~~-~~~t~~~~~~~~~~g~r~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~ 144 (265)
T cd01947 80 TVAWR-DKPTRKTLSFIDPNGERTITVPG--ERL----EDDLKWPILDEGDGVFITAAA--------VDKEAIRKCRETK 144 (265)
T ss_pred eEEec-CCCCceEEEEECCCCcceEEecC--CCC----cccCCHhHhccCCEEEEeccc--------ccHHHHHHHHHhC
Confidence 87654 45899999999888999887652 221 233344567899999999863 1246677777775
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
.+++|++.+.. .+.+.++++++|++++|++|+..+++
T Consensus 145 -~~~~d~~~~~~--------~~~~~~~~~~~d~~~~n~~e~~~l~~ 181 (265)
T cd01947 145 -LVILQVTPRVR--------VDELNQALIPLDILIGSRLDPGELVV 181 (265)
T ss_pred -CeEeccCcccc--------chhHHHHhhhCCEEEeCHHHHHHhhh
Confidence 57889876532 23467889999999999999999876
No 25
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.93 E-value=2.8e-24 Score=181.58 Aligned_cols=182 Identities=28% Similarity=0.367 Sum_probs=152.2
Q ss_pred cceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEc
Q 025807 35 GEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD 110 (248)
Q Consensus 35 G~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~ 110 (248)
|++++|++..++++|.. .+......+||++.|+|.+|++||.++.+++.+|+|.+|+.+++.|++.||+++++.+.
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~ 80 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTV 80 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEc
Confidence 78999999999887754 55667899999999999999999999999999999999999999999999999999877
Q ss_pred CCCCceEEEEEEecCCCceEEEecCCCcccccCcccch--HhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeE
Q 025807 111 STARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL 188 (248)
Q Consensus 111 ~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v 188 (248)
++.+|++++++++++|+|+++.+ .+++..++++.++ .+.++.++++++++ +.+.+.+..+++.++++++++
T Consensus 81 ~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v 153 (293)
T TIGR02152 81 KDTPTGTAFITVDDTGENRIVVV--AGANAELTPEDIDAAEALIAESDIVLLQL-----EIPLETVLEAAKIAKKHGVKV 153 (293)
T ss_pred CCCCCceEEEEEcCCCCEEEEEE--CCcCCcCCHHHHHHHHhhhccCCEEEEec-----CCCHHHHHHHHHHHHHcCCEE
Confidence 77799999999988899988876 4555556666655 24578999998764 235577889999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 189 ~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
++|++.... ....++++++|++++|++|+..+++.
T Consensus 154 ~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~ 188 (293)
T TIGR02152 154 ILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGI 188 (293)
T ss_pred EEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCC
Confidence 999975321 11256789999999999999999874
No 26
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.93 E-value=8.2e-24 Score=176.12 Aligned_cols=172 Identities=26% Similarity=0.315 Sum_probs=137.7
Q ss_pred cEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
+|+++|++++|++... ....+||+++|+|.+|++||.++.+++.+|+|++|+.+++.|++.||+++++.+
T Consensus 1 ~v~~iG~~~~D~~~~~----------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~ 70 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRV 70 (264)
T ss_pred CeEEEcceEEEEeccC----------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEE
Confidence 5899999999999752 367899999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEE
Q 025807 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (248)
Q Consensus 110 ~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~ 189 (248)
.+ .+|+.+++. .++|+|++..++ .++.....+.....+.+++++++|++++.. .+....+++.++++|++|+
T Consensus 71 ~~-~~t~~~~~~-~~~g~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~a~~~g~~v~ 142 (264)
T cd01940 71 KE-GENAVADVE-LVDGDRIFGLSN-KGGVAREHPFEADLEYLSQFDLVHTGIYSH-----EGHLEKALQALVGAGALIS 142 (264)
T ss_pred cC-CCCceEEEE-ecCCceEEEeec-CCcHHhcccCcccHhHHhcCCEEEEccccc-----HHHHHHHHHHHHHcCCEEE
Confidence 55 478888754 467888877653 233222222222334578999999997632 4567889999999999999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHH
Q 025807 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRY 227 (248)
Q Consensus 190 ~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~ 227 (248)
+|++.+ |. .+.+.++++++|++++|++|..
T Consensus 143 ~D~~~~---~~-----~~~~~~~~~~~d~~~~~~~~~~ 172 (264)
T cd01940 143 FDFSDR---WD-----DDYLQLVCPYVDFAFFSASDLS 172 (264)
T ss_pred EcCccc---CC-----HHHHHhhcccCCEEEechhhcC
Confidence 999875 32 2346778999999999987764
No 27
>PRK09954 putative kinase; Provisional
Probab=99.92 E-value=8.2e-24 Score=183.89 Aligned_cols=188 Identities=15% Similarity=0.137 Sum_probs=143.7
Q ss_pred ccEEEEcceeeeeccCCC-Ccccc--cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 29 RLVVCFGEMLIDFVPTVG-GVSLA--EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 29 ~~ilviG~~~vD~~~~~~-~~p~~--~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
..|+|+|++++|++..++ ..|.. ........+||++.|+|.+|++||.++.++|.||+|.+|+.+++.|++.||+++
T Consensus 58 ~~v~viG~~~vD~~~~~~~~~p~~~~~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~ 137 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADIRYPQAASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVNVS 137 (362)
T ss_pred ccEEEEEEEEEEEEEeeCCcCcCCCCCCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCCcc
Confidence 479999999999998776 44543 345667889999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH--hhhcCccEEEEcccccccchhHHHHHHHHHHHHH
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK--NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~ 183 (248)
++.+.++.+|+.++++.+++ +++++...+......++++.++. ..+..++++|+++. .+.+....+++.+
T Consensus 138 ~~~~~~~~~T~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~a-- 209 (362)
T PRK09954 138 GCIRLHGQSTSTYLAIANRQ-DETVLAINDTHILQQLTPQLLNGSRDLIRHAGVVLADCN-----LTAEALEWVFTLA-- 209 (362)
T ss_pred ceEEcCCCCCeEEEEEEcCC-CCEEEEEcCchhhhcCCHHHHHHHHHHHhcCCEEEEECC-----CCHHHHHHHHHhC--
Confidence 99888887899888877754 44555443333444455544442 34678899987652 2344555565554
Q ss_pred CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 184 ~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++++++|+.... ..+.+.++++++|++++|++|++.++|.
T Consensus 210 ~~~~v~~D~~~~~--------~~~~~~~~l~~~dil~~n~~Ea~~l~g~ 250 (362)
T PRK09954 210 DEIPVFVDTVSEF--------KAGKIKHWLAHIHTLKPTQPELEILWGQ 250 (362)
T ss_pred CCCcEEEECCCHH--------HhhhhhhhhccccEEecCHHHHHHHcCC
Confidence 4799999997421 1234577899999999999999999873
No 28
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.92 E-value=3e-24 Score=183.19 Aligned_cols=192 Identities=22% Similarity=0.275 Sum_probs=145.2
Q ss_pred ccccccCCCCCCCccEEEEcceeeeeccC--CCCc----ccc--cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCC
Q 025807 16 LSASMDGGSGAYDRLVVCFGEMLIDFVPT--VGGV----SLA--EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDD 87 (248)
Q Consensus 16 ~~~~~~~~~~~~~~~ilviG~~~vD~~~~--~~~~----p~~--~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D 87 (248)
++++|++ ++|+++|++++|.+.. +++. |.+ ........+|| ++|+|.+|++||.++.++|.||+|
T Consensus 1 ~~~~~~~------~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D 73 (315)
T TIGR02198 1 LIASFKG------AKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDD 73 (315)
T ss_pred ChhhhCC------CcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecc
Confidence 3667775 7799999999999866 4333 111 23344677888 799999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCc----ccch--HhhhcCccEEEEc
Q 025807 88 EFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCE----SELD--KNLIKQGSIFHYG 161 (248)
Q Consensus 88 ~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~v~~~ 161 (248)
.+|+.+++.|+++||+++++.+.++.+|+.++++++++ +.++... ......+.. +.+. .+.++++|++|++
T Consensus 74 ~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 150 (315)
T TIGR02198 74 EAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARN--QQLLRVD-FEERDPINAELEARLLAAIREQLASADAVVLS 150 (315)
T ss_pred hhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCC--eEEEEec-CCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEe
Confidence 99999999999999999999887777999998888753 3333221 111111221 1111 2357899999998
Q ss_pred ccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 162 SISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
++. ....+.+....+++.++++|++|++|++... ...++++|++++|++|++.+++
T Consensus 151 ~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~ 206 (315)
T TIGR02198 151 DYA-KGVLTPRVVQEVIAAARKHGKPVLVDPKGKD-------------FSRYRGATLITPNRKEAEAAVG 206 (315)
T ss_pred cCC-CCccCHHHHHHHHHHHHhcCCCEEEeCCCcc-------------hhhcCCCcEECCCHHHHHHHhC
Confidence 863 3445667888999999999999999998531 1246789999999999999987
No 29
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.92 E-value=8.1e-24 Score=178.21 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=147.1
Q ss_pred EEEEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccce
Q 025807 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (248)
Q Consensus 31 ilviG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v 107 (248)
|+++|++++|++..+++.|.+ ........+||+++|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||++.++
T Consensus 2 v~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~~~ 81 (288)
T cd01941 2 IVVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVRGI 81 (288)
T ss_pred eEEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCcccee
Confidence 899999999999888876543 23346788999999999999999999999999999999999999999999999988
Q ss_pred EEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch--HhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD--KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 108 ~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
. .++.+|+.++++++.+|++++... .......++++.++ ...+.+++++++++. .+.+.+..+++.+++.+
T Consensus 82 ~-~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~~~a~~~~ 154 (288)
T cd01941 82 V-FEGRSTASYTAILDKDGDLVVALA-DMDIYELLTPDFLRKIREALKEAKPIVVDAN-----LPEEALEYLLALAAKHG 154 (288)
T ss_pred e-eCCCCcceEEEEECCCCCEEEEEe-chHhhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHHHHhhhhcC
Confidence 7 566789999999888899887332 12333333332221 245789999988653 34557778999999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
.++++|++.... .++ +.++++++|++++|++|+..+++.
T Consensus 155 ~~v~~d~~~~~~-------~~~-~~~~~~~~dii~~n~~E~~~~~~~ 193 (288)
T cd01941 155 VPVAFEPTSAPK-------LKK-LFYLLHAIDLLTPNRAELEALAGA 193 (288)
T ss_pred CcEEEEccchHH-------hcc-chhhcccceEEeCCHHHHHHHhCc
Confidence 999999864211 111 125889999999999999999874
No 30
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.91 E-value=2.4e-24 Score=184.65 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=151.3
Q ss_pred cEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHc-CC--ce--eEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRL-GG--SS--AFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~l-G~--~v--~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
+++++|++.+|++...+. ..+...+||+++|+|+++++| |. ++ .+++.+|+| +|+.+++.|++.||++
T Consensus 1 ~~~~~G~~~~d~i~~~~~------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~ 73 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGTGM 73 (328)
T ss_pred CccccCcEEeeccccCCC------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCCce
Confidence 478999999999988653 355788999999999999999 55 67 889999999 9999999999999999
Q ss_pred cceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHH-
Q 025807 105 SGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE- 183 (248)
Q Consensus 105 ~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~- 183 (248)
++ .+.++.+|+.++++++++|+|.++++ .+++..+++++++...+..++++|+++... ...+...++++.+++
T Consensus 74 ~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~--~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~---~~~~~~~~~~~~a~~~ 147 (328)
T cd01943 74 VF-RRDPGRLTTRGLNIYDGNDRRFFKYL--TPKKRIDVSDDLNSTPLIRSSCIHLICSPE---RCASIVDDIINLFKLL 147 (328)
T ss_pred EE-EeCCCCcchhhhhhcCCCCcceeeec--CcccccccccccccccccCCCeEEEECCHH---HHHHHHHHHHHHHHhh
Confidence 98 66777799999988888888887776 445566777777666678999999987531 123677888899988
Q ss_pred -----CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 184 -----SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 184 -----~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
.+.++++|+++... ....++.+.++++++|++++|++|++.+++.
T Consensus 148 ~~d~~~g~~~~~d~~~~~~----~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~ 197 (328)
T cd01943 148 KGNSPTRPKIVWEPLPDSC----DPENLEDLLQALPRVDVFSPNLEEAARLLGL 197 (328)
T ss_pred ccccCCccEEEEecCCccc----ChhhHHHHHHHhccCCEECCCHHHHHHHhCC
Confidence 88999999975211 1123456889999999999999999999874
No 31
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.91 E-value=7.7e-23 Score=170.02 Aligned_cols=169 Identities=24% Similarity=0.257 Sum_probs=133.5
Q ss_pred ccEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceE
Q 025807 29 RLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVR 108 (248)
Q Consensus 29 ~~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~ 108 (248)
++|+++|++++|+++..+ ...+||++.|+|.+|++||.++.++|.||+|.+|+.+++.|++.||+++++.
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~ 70 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVH 70 (260)
T ss_pred CeEEEeccceeeecccCC----------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcchhee
Confidence 469999999999997753 3699999999999999999999999999999999999999999999999998
Q ss_pred EcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeE
Q 025807 109 YDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSIL 188 (248)
Q Consensus 109 ~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v 188 (248)
+.++ +|+.+++.++ +++|++..+. .+....+..+..+.+.+++++++|++.+. ...++++.++++|+++
T Consensus 71 ~~~~-~t~~~~~~~~-~~~r~~~~~~-~~~~~~~~~~~~~~~~l~~~~~v~~~~~~--------~~~~~~~~~~~~~~~v 139 (260)
T PRK09813 71 TKHG-VTAQTQVELH-DNDRVFGDYT-EGVMADFALSEEDYAWLAQYDIVHAAIWG--------HAEDAFPQLHAAGKLT 139 (260)
T ss_pred eecC-CCceEEEEEe-CCcEEeeccC-CCcccccccCHHHHHHHHhCCEEEEeccc--------hHHHHHHHHHHcCCeE
Confidence 7654 7888888775 6888876543 23333333333344567899999997531 1246778888999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHH
Q 025807 189 SYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETR 226 (248)
Q Consensus 189 ~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~ 226 (248)
++|++.+. . .+.+.++++++|++++|+.+.
T Consensus 140 ~~D~~~~~---~-----~~~~~~~~~~~d~~~~~~~~~ 169 (260)
T PRK09813 140 AFDFSDKW---D-----SPLWQTLVPHLDYAFASAPQE 169 (260)
T ss_pred EEEcCCCc---c-----HHHHHHhCCceeEEEecCCcc
Confidence 99998642 1 234577899999999987653
No 32
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.91 E-value=6.1e-23 Score=174.23 Aligned_cols=184 Identities=21% Similarity=0.240 Sum_probs=139.5
Q ss_pred cEEEEcceeeeeccCC--CCcccc------cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCC
Q 025807 30 LVVCFGEMLIDFVPTV--GGVSLA------EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENN 101 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~--~~~p~~------~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~g 101 (248)
+|+++|++++|.+..+ +++|.. ........+|| ++|+|.+|++||.++.+++.+|+|.+|+.+++.|++.|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~g 79 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG 79 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCC
Confidence 5899999999998764 333221 22345668899 58999999999999999999999999999999999999
Q ss_pred CCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCccc------chHhhhcCccEEEEcccccccchhHHHHH
Q 025807 102 VDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESE------LDKNLIKQGSIFHYGSISLIAEPCRSTQL 175 (248)
Q Consensus 102 I~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 175 (248)
|+++++ ..++.+|+.+++++++ +++.+..+. .....+.... ...+.++++|++|++++ .....+.+.+.
T Consensus 80 I~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~-~~~~~~~~~~~ 154 (304)
T cd01172 80 IDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDR--EDDSPLSAEEEQRLIERIAERLPEADVVILSDY-GKGVLTPRVIE 154 (304)
T ss_pred CCcceE-ecCCCCceEEEEEecC-CcEEEEEec--CCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcC-CCCccCHHHHH
Confidence 999985 5566679998888774 455554432 1222222221 11235789999999875 33334557888
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 176 AAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 176 ~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
.+++.++++|+++++|++.+. ...++++|++++|++|++.+++.
T Consensus 155 ~~~~~a~~~~~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~ 198 (304)
T cd01172 155 ALIAAARELGIPVLVDPKGRD-------------YSKYRGATLLTPNEKEAREALGD 198 (304)
T ss_pred HHHHHHHhcCCCEEEeCCCcc-------------hhhccCCcEeCCCHHHHHHHhCC
Confidence 999999999999999998631 14678999999999999999874
No 33
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.89 E-value=3.6e-22 Score=169.44 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=140.6
Q ss_pred EEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 33 CFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 33 viG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
|.=++++|++..++++|.- .+......+||+++|+|.+|++||.++.++|.||+| +|+.+++.|++.||+++++.+
T Consensus 4 ~~~~~~~D~~~~~~~~~~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~~ 82 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLTLGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVRV 82 (304)
T ss_pred EEcchHHeEEEEccccccCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEEC
Confidence 4457889999999988721 556778999999999999999999999999999999 699999999999999998876
Q ss_pred cCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH------hhhcCccEEEEcccccccchhHHHHHHHHHHHHH
Q 025807 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKE 183 (248)
Q Consensus 110 ~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~ 183 (248)
. ..|+.++++++.+|+++++.. .+.. ++.+.++. +.+++++++|++++.. ...+.+.+..+++.+++
T Consensus 83 ~--~~t~~~~~~~~~~g~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~~ 155 (304)
T TIGR03828 83 P--GETRINVKIKEPSGTETKLNG--PGPE--ISEEELEALLEKLRAQLAEGDWLVLSGSLP-PGVPPDFYAELIALARE 155 (304)
T ss_pred C--CCCeeeEEEEeCCCCEEEEEC--CCCC--CCHHHHHHHHHHHHHhccCCCEEEEECCCC-CCCCHHHHHHHHHHHHH
Confidence 4 357888888887888877654 3322 33333321 2478999999998732 23455778899999999
Q ss_pred CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 184 SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 184 ~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++++++|++.. ... ..+...+|++++|+.|++.+++.
T Consensus 156 ~~~~v~~D~~~~--------~~~---~~~~~~~~i~~~n~~E~~~l~g~ 193 (304)
T TIGR03828 156 KGAKVILDTSGE--------ALR---DGLKAKPFLIKPNDEELEELFGR 193 (304)
T ss_pred cCCEEEEECChH--------HHH---HHHhcCCcEECcCHHHHHHHhCC
Confidence 999999999741 111 22334578999999999999873
No 34
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.89 E-value=1e-21 Score=165.62 Aligned_cols=181 Identities=20% Similarity=0.214 Sum_probs=141.6
Q ss_pred EEEEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccce
Q 025807 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (248)
Q Consensus 31 ilviG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v 107 (248)
-.++|++++|+++.++++|.. ........+||+++|+|.+|++||.++.++|.||+| +|+.+++.|++.||+++++
T Consensus 3 ~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~~ 81 (289)
T cd01164 3 YTVTLNPAIDLTIELDQLQPGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDFV 81 (289)
T ss_pred EEEecChHHeEEEEcCcccCCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceEE
Confidence 357899999999999988643 556778999999999999999999999999999999 8999999999999999988
Q ss_pred EEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH------hhhcCccEEEEcccccccchhHHHHHHHHHHH
Q 025807 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (248)
Q Consensus 108 ~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 181 (248)
... .+|+.++++.+.+++++.+.. .++ .++++.++. +.+++++++|+++... .....+....+++.+
T Consensus 82 ~~~--~~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~ 154 (289)
T cd01164 82 EVA--GETRINVKIKEEDGTETEINE--PGP--EISEEELEALLEKLKALLKKGDIVVLSGSLP-PGVPADFYAELVRLA 154 (289)
T ss_pred ECC--CCCEEEEEEEeCCCCEEEEeC--CCC--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCcCHHHHHHHHHHH
Confidence 654 357888887776677666553 222 233333321 2357899999998633 223456778899999
Q ss_pred HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhh-hhCCEEEeCHHHHHHhHH
Q 025807 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 182 ~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l-~~~dil~~N~~E~~~l~g 231 (248)
+++++++++|++.+ .+.+.+ +++|++++|++|++.+++
T Consensus 155 ~~~~~~i~~D~~~~------------~~~~~~~~~~dil~~n~~E~~~l~~ 193 (289)
T cd01164 155 REKGARVILDTSGE------------ALLAALAAKPFLIKPNREELEELFG 193 (289)
T ss_pred HHcCCeEEEECChH------------HHHHHHhcCCcEECCCHHHHHHHhC
Confidence 99999999999641 112333 799999999999999986
No 35
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.88 E-value=4.7e-22 Score=178.65 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=141.3
Q ss_pred ccccccCCCCCCCccEEEEcceeeeeccCCC--C----ccc--ccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCC
Q 025807 16 LSASMDGGSGAYDRLVVCFGEMLIDFVPTVG--G----VSL--AEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDD 87 (248)
Q Consensus 16 ~~~~~~~~~~~~~~~ilviG~~~vD~~~~~~--~----~p~--~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D 87 (248)
++.+|++ ++|+|+|++++|.+...+ + .|. .........+|| ++|+|.+|++||.++.++|.+|+|
T Consensus 4 ~~~~~~~------~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D 76 (473)
T PRK11316 4 TLPDFER------AGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGID 76 (473)
T ss_pred hHHhhCC------CcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCC
Confidence 4556654 679999999999997642 2 222 244567788999 699999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch---HhhhcCccEEEEcccc
Q 025807 88 EFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD---KNLIKQGSIFHYGSIS 164 (248)
Q Consensus 88 ~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~g~~ 164 (248)
.+|+.+++.|++.||+++++.+ ++.+|++++++++.+++.. .+. ..........+.+. .+.+++++++|++++.
T Consensus 77 ~~g~~i~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~ 153 (473)
T PRK11316 77 EAARALSKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQLI-RLD-FEEGFEGVDPQPLLERIEQALPSIGALVLSDYA 153 (473)
T ss_pred HHHHHHHHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceEE-ecc-cccCCCchhHHHHHHHHHHHhccCCEEEEecCC
Confidence 9999999999999999998865 5668999988887444322 221 11111122333221 2457899999998763
Q ss_pred cccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 165 LIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 165 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
. . ..+....+++.++++|+++++||+... ...++++|++++|+.|++.++|.
T Consensus 154 ~-~--~~~~~~~~~~~~k~~g~~vv~Dp~~~~-------------~~~~~~~dil~pN~~Ea~~l~g~ 205 (473)
T PRK11316 154 K-G--ALASVQAMIQLARKAGVPVLIDPKGTD-------------FERYRGATLLTPNLSEFEAVVGK 205 (473)
T ss_pred c-c--chhHHHHHHHHHHhcCCeEEEeCCCCC-------------ccccCCCeEECcCHHHHHHHhCC
Confidence 2 1 135577899999999999999997531 13457899999999999999873
No 36
>PLN02548 adenosine kinase
Probab=99.88 E-value=1.5e-21 Score=167.79 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=133.0
Q ss_pred cCCCccccCCChHHHHHHHH---HHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCc
Q 025807 52 EAPAFKKAPGGAPANVAVGI---SRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGER 128 (248)
Q Consensus 52 ~~~~~~~~~GG~a~N~a~al---a~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r 128 (248)
........+||++.|+|.++ +++|.++.|+|.||+|.+|+.+++.|+++||+++++.. ++.+|+.++++++ +|+|
T Consensus 43 ~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~-~~~~T~~~~i~~~-~g~r 120 (332)
T PLN02548 43 SKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYED-ESTPTGTCAVLVV-GGER 120 (332)
T ss_pred ccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeecc-CCCCCceEEEEEe-cCCc
Confidence 45567889999999986544 56699999999999999999999999999999998754 6678999988886 7999
Q ss_pred eEEEecCCCcccccCcccch----HhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHH
Q 025807 129 EFLFFRHPSADMLLCESELD----KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEA 204 (248)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~ 204 (248)
+++.+ .++...++.+.+. .+.++.++++|++|+.+. .+.+.+..+++.++++|+++.+|++. +.|. +.
T Consensus 121 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~~~~~~~~--~~~~--~~ 192 (332)
T PLN02548 121 SLVAN--LSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT--VSPESIMLVAEHAAANNKTFMMNLSA--PFIC--EF 192 (332)
T ss_pred eeeec--cchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc--CCHHHHHHHHHHHHHcCCEEEEECCC--hhHH--HH
Confidence 88765 3344334443332 235688999999986442 34577888999999999988888853 2343 23
Q ss_pred HHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 205 AREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 205 ~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
.++.++++++++|++++|++|+..+++
T Consensus 193 ~~~~l~~~l~~~dil~~n~~E~~~l~g 219 (332)
T PLN02548 193 FKDQLMEALPYVDFLFGNETEARTFAK 219 (332)
T ss_pred hHHHHHHHHhhCCEEEecHHHHHHHhC
Confidence 456788999999999999999999986
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.88 E-value=3.3e-21 Score=163.64 Aligned_cols=179 Identities=22% Similarity=0.261 Sum_probs=137.5
Q ss_pred cceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcC
Q 025807 35 GEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDS 111 (248)
Q Consensus 35 G~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~ 111 (248)
=++.+|++..+++++.- .++.....+||.+.|+|.++++||.++.++|.||+| +|+.+++.|++.||+++++...
T Consensus 6 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~- 83 (303)
T TIGR03168 6 LNPAIDLTIEVDGLTPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVK- 83 (303)
T ss_pred cchHHeEEEEcCccccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECC-
Confidence 35678888888775331 455678999999999999999999999999999999 7999999999999999988754
Q ss_pred CCCceEEEEEEecCCCceEEEecCCCcccccCcccchH------hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 112 TARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 112 ~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
..|+.++++++++|+++.+.. .+. .++++.++. +.++++|++|++++. ....+.+.+..+++.++++|
T Consensus 84 -~~t~~~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~g 157 (303)
T TIGR03168 84 -GETRINVKIKESSGEETELNE--PGP--EISEEELEQLLEKLRELLASGDIVVISGSL-PPGVPPDFYAQLIAIARKRG 157 (303)
T ss_pred -CCCEEeEEEEeCCCCEEEEeC--cCC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCC-CCCCCHHHHHHHHHHHHHCC
Confidence 367778777777787766554 222 244443331 247899999998863 23345677889999999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++++|++.. ... ..+..++|++++|+.|+..++|.
T Consensus 158 ~~v~~D~~~~--------~~~---~~~~~~~dil~~n~~E~~~l~g~ 193 (303)
T TIGR03168 158 AKVILDTSGE--------ALR---EALAAKPFLIKPNHEELEELFGR 193 (303)
T ss_pred CEEEEECCcH--------HHH---HHHhcCCcEECCCHHHHHHHhCC
Confidence 9999999741 111 22335799999999999999873
No 38
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.87 E-value=1.5e-20 Score=160.29 Aligned_cols=183 Identities=14% Similarity=0.045 Sum_probs=142.7
Q ss_pred EE-EEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccc
Q 025807 31 VV-CFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (248)
Q Consensus 31 il-viG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~ 106 (248)
|+ +.=++++|++..++++|.. .+......+||+++|+|.+|++||.++.++|.||+|.+|+. ++.|+++||++.+
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~ 83 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIANRF 83 (312)
T ss_pred EEEEecChHHeEEEEcCceecCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCccE
Confidence 55 6679999999999887642 56677899999999999999999999999999999999986 6899999999876
Q ss_pred eEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch------HhhhcCccEEEEcccccccchhHHHHHHHHHH
Q 025807 107 VRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD------KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNL 180 (248)
Q Consensus 107 v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 180 (248)
+ +.++ +|+.++++++.+|+++++.. .+. .+++...+ ...++++|++|++|+.. .....+....+++.
T Consensus 84 ~-~~~~-~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~-~~~~~~~~~~~~~~ 156 (312)
T PRK09513 84 Q-VVQG-RTRINVKLTEKDGEVTDFNF--SGF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLP-RGVSPEAFTDWMTR 156 (312)
T ss_pred E-ECCC-CCEEEEEEEeCCCcEEEEeC--CCC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CCCCHHHHHHHHHH
Confidence 6 4444 78888888887888886654 222 23333221 23578999999999743 33456788899999
Q ss_pred HHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 181 AKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 181 a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
++++|.++++|++.. ..+ ..+..+.+++++|++|+..++|.
T Consensus 157 a~~~g~~v~~D~~~~--------~~~---~~~~~~~~~l~~n~~E~~~l~g~ 197 (312)
T PRK09513 157 LRSQCPCIIFDSSRE--------ALV---AGLKAAPWLVKPNRRELEIWAGR 197 (312)
T ss_pred HHhcCCEEEEECChH--------HHH---HHhccCCeEEcCCHHHHHHHhCC
Confidence 999999999999741 111 22445789999999999999874
No 39
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.87 E-value=1e-20 Score=161.14 Aligned_cols=183 Identities=13% Similarity=0.145 Sum_probs=139.6
Q ss_pred EEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 33 CFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 33 viG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
+.=++++|....++++|.. .++.....+||+++|+|.+|++||.++.+++.+|+| +|+.+++.|++.||+++++..
T Consensus 4 ~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~~~~~~~ 82 (309)
T TIGR01231 4 VTLNPSVDISYPLTALKLDTVNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDIKHAFYKI 82 (309)
T ss_pred EEcchHHeEEEEcCCeeeCceEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCCceeEEEC
Confidence 4457788998888876653 456678899999999999999999999999999975 999999999999999998865
Q ss_pred cCCCCceEEEEEEecCCCceEEEecCCCcccccC--cccc--hHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLC--ESEL--DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 110 ~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
. . .|+.++.++. +|+|++++.+ ++..... ...+ ....++++|++|++|+.. ...+...+..+++.++++|
T Consensus 83 ~-~-~t~~~~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~~g 156 (309)
T TIGR01231 83 S-G-ETRNCIAILH-EGQQTEILEQ--GPEISNQEAAGFLKHFEQLLEKVEVVAISGSLP-KGLPQDYYAQIIERCQNKG 156 (309)
T ss_pred C-C-CCEEeEEEEe-CCCEEEEeCC--CCCCCHHHHHHHHHHHHHHhccCCEEEEECCCC-CCcCHHHHHHHHHHHHhCC
Confidence 3 2 5777766665 6888887763 3321111 0111 123578999999998643 3345678889999999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
+++++|++.+ . .+.+...++++|++++|++|++.++|
T Consensus 157 ~~v~~D~~~~--------~-~~~~~~~~~~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 157 VPVVLDCSGA--------T-LQTVLENPAKPTVIKPNIEELSQLLN 193 (309)
T ss_pred CeEEEECChH--------H-HHHHHhccCCCeEEcCCHHHHHHHhC
Confidence 9999999752 1 12344556789999999999999987
No 40
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.87 E-value=1.3e-20 Score=160.42 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=140.4
Q ss_pred EEEEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccce
Q 025807 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (248)
Q Consensus 31 ilviG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v 107 (248)
+.+..++++|.+..+++++.. .+......+||++.|+|.+|++||.++.++|.+|+ .+|+.+++.|++ ||+++++
T Consensus 3 ~~~t~np~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~~ 80 (309)
T PRK13508 3 LTVTLNPSIDISYPLDELKLDTVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAFY 80 (309)
T ss_pred EEEecChHHeEEEEeCCeeeCCeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceEE
Confidence 446689999999998887654 34467789999999999999999999999999996 689999999999 9999876
Q ss_pred EEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch------HhhhcCccEEEEcccccccchhHHHHHHHHHHH
Q 025807 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD------KNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (248)
Q Consensus 108 ~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 181 (248)
.. ++ .|+.++++++ +|+|+++.. .++. +..+... .+.++++|++|++|+.. ...+.+....+++.+
T Consensus 81 ~~-~~-~t~~~~~~~~-~g~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~~a 152 (309)
T PRK13508 81 KI-KG-ETRNCIAILH-EGQQTEILE--KGPE--ISVQEADGFLHHFKQLLESVEVVAISGSLP-AGLPVDYYAQLIELA 152 (309)
T ss_pred EC-CC-CCeeeEEEEe-CCCEEEEEC--CCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCC-CCcCHHHHHHHHHHH
Confidence 43 43 6888877776 788887765 3332 2222111 23578999999998643 223456678899999
Q ss_pred HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 182 KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 182 ~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++|+++++|++.. . ...+...++++|++++|++|++.++|.
T Consensus 153 ~~~g~~v~~D~~~~-------~--~~~~~~~~~~~dii~~n~~E~~~l~g~ 194 (309)
T PRK13508 153 NQAGKPVVLDCSGA-------A--LQAVLESPYKPTVIKPNIEELSQLLGK 194 (309)
T ss_pred HHCCCEEEEECCcH-------H--HHHHHhccCCceEEccCHHHHHHHhCC
Confidence 99999999999741 1 123333467899999999999999874
No 41
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.4e-21 Score=158.33 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=157.2
Q ss_pred EEEEcceeeeeccCCCCc-----ccc-------------------cCCCccccCCChHHHHHHHHHHcCC---ceeEEEe
Q 025807 31 VVCFGEMLIDFVPTVGGV-----SLA-------------------EAPAFKKAPGGAPANVAVGISRLGG---SSAFVGK 83 (248)
Q Consensus 31 ilviG~~~vD~~~~~~~~-----p~~-------------------~~~~~~~~~GG~a~N~a~ala~lG~---~v~l~~~ 83 (248)
.+.+|++.+|+...++.. ++. ........+||++.|++..+++++. .+.++|.
T Consensus 9 l~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~Gs 88 (343)
T KOG2854|consen 9 LVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGS 88 (343)
T ss_pred eeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEee
Confidence 566899999999877632 211 2335678899999999999999977 8999999
Q ss_pred eCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch----HhhhcCccEEE
Q 025807 84 LGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD----KNLIKQGSIFH 159 (248)
Q Consensus 84 vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~ 159 (248)
||.|++|+.+.+.+++.||++.|.. .++.+|++|.++++.++ |+.+.+ .++...++.+++. +..++++.++|
T Consensus 89 vG~Dk~ge~l~~~~~~aGv~~~yq~-~~d~~TGtCavli~~~n-RSL~an--LgAAn~f~~dhl~~~~~~~lveka~v~y 164 (343)
T KOG2854|consen 89 VGKDKFGELLKSKARAAGVNVHYQV-KEDGPTGTCAVLITGDN-RSLCAN--LGAANCFKVDHLDKEENWALVEKAKVFY 164 (343)
T ss_pred ccCchHHHHHHHHHHhcCceEEEEe-ccCCCCceEEEEEeCCC-cchhhc--cchhhccCHHHhcchhhhhhhhheeEEE
Confidence 9999999999999999999998775 46679999999999666 887765 5666667777763 34789999999
Q ss_pred EcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 160 YGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
++|+.+ +..+++++.+.+.+.+...+..++++.... .+.+++.+...++++|++|.|++|++++...
T Consensus 165 v~Gffl--tv~p~ai~~v~qh~~e~~r~~~lnlsapfI----~q~~~~~l~~v~~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 165 VAGFFL--TVSPDAIRKVAQHAAENNRVFTLNLSAPFI----SQFFKDALDKVLPYADIIFGNEDEAAAFARA 231 (343)
T ss_pred EEEEEE--EeChHHHHHHHHHHHHhcchhheeccchhH----HHHHHHHHHhhcCcceEEEcCHHHHHHHHHh
Confidence 999865 345688999999999988888888865432 3566888999999999999999999998764
No 42
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.86 E-value=3.9e-20 Score=157.51 Aligned_cols=185 Identities=20% Similarity=0.195 Sum_probs=141.5
Q ss_pred EEEEcceeeeeccCCCCcccc---cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccce
Q 025807 31 VVCFGEMLIDFVPTVGGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGV 107 (248)
Q Consensus 31 ilviG~~~vD~~~~~~~~p~~---~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v 107 (248)
+.+.=++.+|.++.+++++.. .+......+||+++|+|.+|++||.++.+++.+|+ ++|+.+++.|++.||+++++
T Consensus 5 ~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~ 83 (309)
T PRK10294 5 YTLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATV 83 (309)
T ss_pred EEEecChHHeEEEEeCceeeCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceEE
Confidence 345578899999999887542 56677889999999999999999999999999996 79999999999999999998
Q ss_pred EEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH-----hhhcCccEEEEcccccccchhHHHHHHHHHHHH
Q 025807 108 RYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK-----NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK 182 (248)
Q Consensus 108 ~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~ 182 (248)
.+.+. .++..++.++++|++++++. .++. ++.+.++. +.+++++++|++|+.. ...+.+.+..+++.++
T Consensus 84 ~~~~~-~~~~~~i~~~~~g~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~a~ 157 (309)
T PRK10294 84 EAKDW-TRQNLHVHVEASGEQYRFVM--PGAA--LNEDEFRQLEEQVLEIESGAILVISGSLP-PGVKLEKLTQLISAAQ 157 (309)
T ss_pred ECCCC-CeeeEEEEEcCCCcEEEEEC--CCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCCHHHHHHHHHHHH
Confidence 76543 44445556677788776665 3332 34433332 2367899999998643 3445678889999999
Q ss_pred HCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 183 ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 183 ~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
++|+++++|++.. ..+..+ .++++|++++|++|+..|++.
T Consensus 158 ~~g~~v~~D~~~~--------~~~~~~--~~~~~~~i~~n~~E~~~l~g~ 197 (309)
T PRK10294 158 KQGIRCIIDSSGD--------ALSAAL--AIGNIELVKPNQKELSALVNR 197 (309)
T ss_pred HcCCeEEEeCCCH--------HHHHHH--hcCCCeEECCCHHHHHHHhCC
Confidence 9999999999631 112111 246899999999999999874
No 43
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.85 E-value=3.7e-20 Score=153.28 Aligned_cols=169 Identities=20% Similarity=0.180 Sum_probs=123.4
Q ss_pred cEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
+|+++|++++|++...+ .....+||+++|+|.+|++||.++.++|.+|+|.+|+ ++.|++.||++..+
T Consensus 1 ~il~iG~~~iD~~~~~~--------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~~~-- 68 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVISL-- 68 (254)
T ss_pred CeEEEcceeEEEEecCC--------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEEEe--
Confidence 59999999999998643 3468899999999999999999999999999999998 78999999996432
Q ss_pred cCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEE
Q 025807 110 DSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS 189 (248)
Q Consensus 110 ~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~ 189 (248)
+...|+.+++.++.+|++++.++. +........ ...+.++|++|++++. .+....+.+. .++|+
T Consensus 69 -~~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~v~ 132 (254)
T cd01937 69 -LSTETTTFELNYTNEGRTRTLLAK--CAAIPDTES---PLSTITAEIVILGPVP------EEISPSLFRK----FAFIS 132 (254)
T ss_pred -cCCCeEEEEEEecCCCCeeeeecc--ccCCccccc---ccccCcccEEEECCCc------chhcHHHHhh----hhhee
Confidence 333677777777767788777652 333222211 2346789999998751 2222333332 27899
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 190 YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 190 ~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
+|++.....|... ...+.++++++|++++|++|+..+
T Consensus 133 ~D~~~~~~~~~~~---~~~~~~~l~~~di~~~n~~E~~~~ 169 (254)
T cd01937 133 LDAQGFLRRANQE---KLIKCVILKLHDVLKLSRVEAEVI 169 (254)
T ss_pred Eccccceeecccc---chHHHhhcccCcEEEEcHHHHhhc
Confidence 9998643223221 223578999999999999999864
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.85 E-value=8.5e-20 Score=156.30 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=137.9
Q ss_pred CCccEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccc
Q 025807 27 YDRLVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSG 106 (248)
Q Consensus 27 ~~~~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~ 106 (248)
..++|+++|++++|++..++. .....+||+++|+|.+|++||.++.++|.||+|.. .+++...
T Consensus 10 ~~~~vlvvG~~~~D~i~~~g~-------~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~v~~~~ 72 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQNGS-------VTAESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQVSHPP 72 (335)
T ss_pred CCCCEEEEeeeeeeEEEeCCc-------EEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------ccccccc
Confidence 457899999999999987632 24578999999999999999999999999999942 3777665
Q ss_pred eEEcCCCCceEEEEEEec-----CCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHH
Q 025807 107 VRYDSTARTALAFVTLRA-----DGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLA 181 (248)
Q Consensus 107 v~~~~~~~T~~~~i~i~~-----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a 181 (248)
+.. ++.+|+.+++++++ +++++++.. .+++..+++++++...++.++++++.+. .+.+....+++.+
T Consensus 73 ~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~--~ga~~~l~~~di~~~~~~~~~~~~l~~e-----i~~e~~~~~~~~a 144 (335)
T PLN02630 73 IVI-PDSKTTEFHADFDQGIDGNGHEDRVLKR--VCACDPIEPSDIPDMRYEFGMAVGVAGE-----ILPETLERMVEIC 144 (335)
T ss_pred eec-CCCCceEEEEEEcCCcccCCCCeEEEEe--ccccCCCChHHCCHHHhcccceeeecCC-----CcHHHHHHHHHHh
Confidence 544 66789999988775 568888776 7888888888876545777788877543 3457788899988
Q ss_pred HH-----CCCeEEEeCCCC-CCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 182 KE-----SGSILSYDPNLR-LPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 182 ~~-----~g~~v~~D~~~~-~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
+. +|..+++|+++. ...|... ...+.++++++|++++|++|+..+
T Consensus 145 ~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l 195 (335)
T PLN02630 145 DVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI 195 (335)
T ss_pred hhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc
Confidence 88 799999999863 4445311 134678999999999999999987
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.83 E-value=2.2e-19 Score=150.53 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=127.2
Q ss_pred cEEEEcceeeeeccCCCCcccccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEE
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRY 109 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~ 109 (248)
.|+|+|++++|++.... . .....+||++.|+|.+|++|| ++.+++.||+| +|+.+++.|+++||+++++.+
T Consensus 1 ~v~~~G~~~~D~~~~~~------~-~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~ 71 (277)
T cd01946 1 SLLVVGSVAFDAIETPF------G-KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLS 71 (277)
T ss_pred CeEEEEEeeeeeecCCC------c-eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEE
Confidence 38999999999994321 1 135779999999999999998 69999999999 899999999999999999988
Q ss_pred cCCCCceEEEEEE--ecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCe
Q 025807 110 DSTARTALAFVTL--RADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI 187 (248)
Q Consensus 110 ~~~~~T~~~~i~i--~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~ 187 (248)
.++.+|....... +.+++++.... ......+.+. + .+.+++++++|++++ +.+...++++.+++. .+
T Consensus 72 ~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~v~~~~~------~~~~~~~~~~~~~~~-~~ 140 (277)
T cd01946 72 KEDGKTFHWAGRYHYDLNEADTLDTD--LNVFADFDPQ-L-PEHYKDSEFVFLGNI------APELQREVLEQVKDP-KL 140 (277)
T ss_pred ecCCCeEEEeeEehhhcccccchhhh--hhHHhhcCCC-C-hHHhhcCCEEEECCC------CHHHHHHHHHHHHhC-CE
Confidence 7665663221111 01223322211 1111122221 2 245788999999865 235567788888877 88
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 188 LSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 188 v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++|+.. .|. ....+.+.++++++|++++|++|+..+++.
T Consensus 141 v~~D~~~---~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~ 180 (277)
T cd01946 141 VVMDTMN---FWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGA 180 (277)
T ss_pred EEEccHH---Hhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCC
Confidence 9999842 353 123566788999999999999999999874
No 46
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.2e-18 Score=137.32 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=147.1
Q ss_pred CccEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCC
Q 025807 28 DRLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (248)
Q Consensus 28 ~~~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~ 103 (248)
+..||++|.+.+|++..++..|.+ ...+-.++-||.+.|++.+|+.||.++.|+|.+...+.-+.+++.|++.|||
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgId 83 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGID 83 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCCC
Confidence 356999999999999999888775 3345578899999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCCceEEEEEEec-CCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHH
Q 025807 104 TSGVRYDSTARTALAFVTLRA-DGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK 182 (248)
Q Consensus 104 ~~~v~~~~~~~T~~~~i~i~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~ 182 (248)
++++...+. +.+.+.++++. .|.||++++ ..+....+.+++..-.+++..|+|+.+.. +.+. .++++...
T Consensus 84 ishcpftd~-~pp~ssiI~~r~s~trTil~~--dks~p~vT~~dF~kvdl~qy~WihfE~Rn-----p~et-lkM~~~I~ 154 (308)
T KOG2947|consen 84 ISHCPFTDH-SPPFSSIIINRNSGTRTILYC--DKSLPDVTATDFEKVDLTQYGWIHFEARN-----PSET-LKMLQRID 154 (308)
T ss_pred cccCccccC-CCCcceEEEecCCCceEEEEe--cCCCccccHHHhhhcccceeeeEEEecCC-----hHHH-HHHHHHHH
Confidence 999988765 56666666664 688999987 34555667777766678999999998752 2232 23333333
Q ss_pred H--------CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhH
Q 025807 183 E--------SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCI 230 (248)
Q Consensus 183 ~--------~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~ 230 (248)
+ .++.|++|+..+ ++.+..+++.+|++|++++-++.+.
T Consensus 155 ~~N~r~pe~qrI~vSvd~en~----------req~~~l~am~DyVf~sK~~a~~~g 200 (308)
T KOG2947|consen 155 AHNTRQPEEQRIRVSVDVENP----------REQLFQLFAMCDYVFVSKDVAKHLG 200 (308)
T ss_pred HhhcCCCccceEEEEEEecCc----------HHHHHHHhhcccEEEEEHHHHhhhc
Confidence 2 457899999642 6778889999999999999888874
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.6e-17 Score=139.80 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=141.8
Q ss_pred cccccccCCCCCCCccEEEEcceeeeeccCCC--C----cccc--cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCC
Q 025807 15 DLSASMDGGSGAYDRLVVCFGEMLIDFVPTVG--G----VSLA--EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGD 86 (248)
Q Consensus 15 ~~~~~~~~~~~~~~~~ilviG~~~vD~~~~~~--~----~p~~--~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~ 86 (248)
..+.+|+. .+|+|+|.+++|.|.+.+ + -|.+ ........+|| |+|||.+++.||.++.++|.+|.
T Consensus 3 ~~~~~f~~------~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~ 75 (467)
T COG2870 3 LLLPNFKQ------AKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGK 75 (467)
T ss_pred chhhhhcC------CcEEEEcceeeeeeccccccccCCCCCCceEEeccccccccc-HHHHHHHHHHcCCCEEEEEeecc
Confidence 34566774 789999999999986543 2 2333 55666789999 69999999999999999999999
Q ss_pred CHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccch---HhhhcCccEEEEccc
Q 025807 87 DEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELD---KNLIKQGSIFHYGSI 163 (248)
Q Consensus 87 D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~g~ 163 (248)
|..|+.+.+.|+..+|++.++ ++++.+|....-++.. .++.+..+..........+.+- .+.+.+.+.+.+|.|
T Consensus 76 Deag~~L~~~l~~~~i~~~l~-~~~~r~T~~K~Rv~s~--nQQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY 152 (467)
T COG2870 76 DEAGKALIELLKANGIDSDLL-RDKNRPTIVKLRVLSR--NQQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDY 152 (467)
T ss_pred chhHHHHHHHHHhcCcccceE-eecCCCceeeeeeecc--cceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEecc
Confidence 999999999999999996644 6677899988877763 3333322111111111111111 245789999999988
Q ss_pred ccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 164 SLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
.= .-. ..++.+++.||+.|++|.+||-... .+.+..+.+++||..|++...|.
T Consensus 153 ~K-G~L--~~~q~~I~~ar~~~~pVLvDPKg~D-------------f~~Y~GAtLiTPN~~E~~~~vg~ 205 (467)
T COG2870 153 AK-GVL--TNVQKMIDLAREAGIPVLVDPKGKD-------------FEKYRGATLITPNLKEFEEAVGK 205 (467)
T ss_pred cc-ccc--hhHHHHHHHHHHcCCcEEECCCCcc-------------hhhhCCCeecCCCHHHHHHHHcc
Confidence 42 111 2267999999999999999997531 34568899999999999999986
No 48
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.6e-17 Score=138.03 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=142.7
Q ss_pred cceeeeeccCCCCccc---ccCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcC
Q 025807 35 GEMLIDFVPTVGGVSL---AEAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDS 111 (248)
Q Consensus 35 G~~~vD~~~~~~~~p~---~~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~ 111 (248)
=++.+|++..++.+.. .+.......+||+|.|||.+|+.||.++...|.+|.+ .|+.+.+.|++.||...++.+.
T Consensus 7 LNPaiD~~~~l~~l~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~- 84 (310)
T COG1105 7 LNPALDYTVFLDELELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVK- 84 (310)
T ss_pred cChhHhheeecccccccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEcc-
Confidence 4678888888876543 3667788999999999999999999999999999999 8999999999999999988664
Q ss_pred CCCceEEEEEEec-CCCceEEEecCCCcccccCcccchH------hhhcCccEEEEcccccccchhHHHHHHHHHHHHHC
Q 025807 112 TARTALAFVTLRA-DGEREFLFFRHPSADMLLCESELDK------NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES 184 (248)
Q Consensus 112 ~~~T~~~~i~i~~-~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~ 184 (248)
..|..++-+.+. +++.+-+.. +++. ++.+++.. ..++..|++.++|. +.+..+.+.+.++++.++++
T Consensus 85 -g~TRinvki~~~~~~~~Tein~--~Gp~--is~~~~~~~l~~~~~~l~~~d~VvlsGS-lP~g~~~d~y~~li~~~~~~ 158 (310)
T COG1105 85 -GDTRINVKILDEEDGEETEINF--PGPE--ISEAELEQFLEQLKALLESDDIVVLSGS-LPPGVPPDAYAELIRILRQQ 158 (310)
T ss_pred -CCCeeeEEEEecCCCcEEEecC--CCCC--CCHHHHHHHHHHHHHhcccCCEEEEeCC-CCCCCCHHHHHHHHHHHHhc
Confidence 378888888775 454555543 4443 45544432 24788999999995 66778899999999999999
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHhh-hhCCEEEeCHHHHHHhHHH
Q 025807 185 GSILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 185 g~~v~~D~~~~~~~w~~~~~~~~~~~~~l-~~~dil~~N~~E~~~l~g~ 232 (248)
|++|++|.+. +.+...+ ....++|||.+|++.++|.
T Consensus 159 g~~vilD~Sg------------~~L~~~L~~~P~lIKPN~~EL~~~~g~ 195 (310)
T COG1105 159 GAKVILDTSG------------EALLAALEAKPWLIKPNREELEALFGR 195 (310)
T ss_pred CCeEEEECCh------------HHHHHHHccCCcEEecCHHHHHHHhCC
Confidence 9999999973 2333333 3699999999999999986
No 49
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.70 E-value=5.3e-16 Score=123.15 Aligned_cols=122 Identities=25% Similarity=0.355 Sum_probs=103.3
Q ss_pred cEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 30 LVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 30 ~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
+|+++|++++|.+..+++.|.. ........+||++.|+|.+|++||.++.+++
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 4899999999999999887764 4567789999999999999999999999999
Q ss_pred ceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCC
Q 025807 106 GVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG 185 (248)
Q Consensus 106 ~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g 185 (248)
+|++|+++.... .+...++++.+++.|
T Consensus 58 -------------------------------------------------~~~v~i~~~~~~----~~~~~~~~~~~~~~~ 84 (196)
T cd00287 58 -------------------------------------------------ADAVVISGLSPA----PEAVLDALEEARRRG 84 (196)
T ss_pred -------------------------------------------------ccEEEEecccCc----HHHHHHHHHHHHHcC
Confidence 889999986322 366788999999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+++++|++.....|.. +.+.++++++|++++|++|++.+++.
T Consensus 85 ~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~ 126 (196)
T cd00287 85 VPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGR 126 (196)
T ss_pred CeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCC
Confidence 9999999977654432 22677889999999999999999874
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.50 E-value=6.1e-07 Score=77.62 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=97.2
Q ss_pred ccEEEEcceeeeeccCCCCcccc----cCCCccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 29 RLVVCFGEMLIDFVPTVGGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 29 ~~ilviG~~~vD~~~~~~~~p~~----~~~~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
.+-+++|...+|....++...+- ......+..||.|.|.|-++++||.++.|++.||+|-
T Consensus 341 ~KPv~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~---------------- 404 (614)
T KOG3009|consen 341 RKPVSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDN---------------- 404 (614)
T ss_pred cCceeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCC----------------
Confidence 44599999999999988864332 2234567899999999999999999999999999991
Q ss_pred cceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHC
Q 025807 105 SGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES 184 (248)
Q Consensus 105 ~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~ 184 (248)
+++-.... . ....+...+.+ .++++.+++ +.+...+..+++ ++++
T Consensus 405 --------------------n~~~~~~~------~--~~~~e~~~dl~-~a~~I~~Ds-----NiS~~~Ma~il~-ak~~ 449 (614)
T KOG3009|consen 405 --------------------NGHFFRQN------S--HKIVESNEDLL-SADFILLDS-----NISVPVMARILE-AKKH 449 (614)
T ss_pred --------------------cchhhhhh------h--hhhhhhhhhhh-cCCEEEEcC-----CCCHHHHHHHHH-hhhc
Confidence 22211100 0 01111122233 788887664 466777888888 8999
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHhh-hhCCEEEeCHHHHH
Q 025807 185 GSILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVKFETRY 227 (248)
Q Consensus 185 g~~v~~D~~~~~~~w~~~~~~~~~~~~~l-~~~dil~~N~~E~~ 227 (248)
.++|+|.|..-+ ...+.++-++ ..++.+.+|..|+-
T Consensus 450 k~~V~fEPTd~~-------k~~K~fk~l~v~~i~~i~PN~~Ell 486 (614)
T KOG3009|consen 450 KKQVWFEPTDID-------KVKKVFKTLLVGAITAISPNANELL 486 (614)
T ss_pred cCceEecCCCch-------hhhhhhhhcceeeEEeeCCCHHHHH
Confidence 999999997532 2233333322 25889999999984
No 51
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=97.84 E-value=9.8e-05 Score=61.08 Aligned_cols=78 Identities=15% Similarity=-0.004 Sum_probs=58.4
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHC--CCeEEEeCCCCC--CCCCCHHHHHHHHHHhhh-hCCEEEeCHHHHH
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKES--GSILSYDPNLRL--PLWPSEEAAREGIMSIWD-QADIIKVKFETRY 227 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~--~~w~~~~~~~~~~~~~l~-~~dil~~N~~E~~ 227 (248)
...+.+ .+|+ +.+....+.+.++++.++++ +++|++||.... ..|...+...+.+.+++. ++|++++|..|++
T Consensus 71 ~~~~~v-~~G~-l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAV-LTGY-LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEE-EEec-CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 456777 4554 33456678888999999887 899999997432 345323455677777777 9999999999999
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.|+|.
T Consensus 149 ~l~g~ 153 (254)
T cd01173 149 LLTGK 153 (254)
T ss_pred HHcCC
Confidence 99984
No 52
>PRK07105 pyridoxamine kinase; Validated
Probab=97.68 E-value=0.00015 Score=61.01 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=55.8
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCC--CCCCC-HHHHHHHHHHhhhhCCEEEeCHHHHHHhH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL--PLWPS-EEAAREGIMSIWDQADIIKVKFETRYSCI 230 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~~w~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~ 230 (248)
.+|.++++.+ .+....+.+.++++.+++.++++++||..+. .+|.. .+...+.+.++++++|++++|+.|++.|+
T Consensus 75 ~~~aik~G~l--~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGYL--GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECcC--CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 6788887643 2333455666677776777899999998543 23431 23456667789999999999999999998
Q ss_pred HH
Q 025807 231 QK 232 (248)
Q Consensus 231 g~ 232 (248)
|.
T Consensus 153 g~ 154 (284)
T PRK07105 153 DK 154 (284)
T ss_pred CC
Confidence 74
No 53
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=97.60 E-value=0.0012 Score=58.74 Aligned_cols=165 Identities=9% Similarity=0.018 Sum_probs=94.6
Q ss_pred ccccCCChHHHHHHHHHHcCC-ceeEEEeeCCCHHHHHHHHHHHH-CCCCcc---------ceEEcCCCCceEEEEEEe-
Q 025807 56 FKKAPGGAPANVAVGISRLGG-SSAFVGKLGDDEFGYMLANILKE-NNVDTS---------GVRYDSTARTALAFVTLR- 123 (248)
Q Consensus 56 ~~~~~GG~a~N~a~ala~lG~-~v~l~~~vG~D~~g~~i~~~L~~-~gI~~~---------~v~~~~~~~T~~~~i~i~- 123 (248)
.....||.|.-+|..++.+|. +|.+.+++..... ..|-. .+|-.- -+...=+.+.|..+--+.
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~~-----~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~~~a 175 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKLQ-----AELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGDFVA 175 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcHHH-----HHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecceEc
Confidence 358999999999999999998 8888887654422 22221 111110 000000112222211111
Q ss_pred cCCCceEEEecCCCcccccCcccchHhhhcC-ccEEEEcccccccchh--HHHHHHHHHHHH------HCCCeEEEeCCC
Q 025807 124 ADGEREFLFFRHPSADMLLCESELDKNLIKQ-GSIFHYGSISLIAEPC--RSTQLAAMNLAK------ESGSILSYDPNL 194 (248)
Q Consensus 124 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~--~~~~~~~~~~a~------~~g~~v~~D~~~ 194 (248)
+...|-++.++.... ....+++..+..+. +|.+.++|+.++.+.. .+...+.+++++ +.++++=+...+
T Consensus 176 PraNRfI~~~d~~n~--l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As 253 (445)
T cd01938 176 PRANRFIFHDDDNNP--MLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAS 253 (445)
T ss_pred CCCCeEEEecCCcch--hhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecc
Confidence 222333443332222 22223333344444 9999999998754422 222333333332 234788888876
Q ss_pred CCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 195 RLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 195 ~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
..+.+-.+..+..+++++|-+=+||.|+..++.
T Consensus 254 ----~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 254 ----TVDEELREEILHEVVPYVDSLGLNEQELANLLQ 286 (445)
T ss_pred ----cccHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 345666677777899999999999999999875
No 54
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.59 E-value=0.0024 Score=56.59 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=54.8
Q ss_pred hcCccEEEEcccccccc---------hhHHHHHHHHHHHH--HCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEE
Q 025807 152 IKQGSIFHYGSISLIAE---------PCRSTQLAAMNLAK--ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 220 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~---------~~~~~~~~~~~~a~--~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~ 220 (248)
..++|.+.++|+.++.+ .-.+.....++..+ ..++++-+...+ ..+.+-.+..+..+++++|.+=
T Consensus 208 ~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As----~~~~~i~~~v~~~Ilp~VDSlG 283 (453)
T PRK14039 208 AGEMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGH----FASKEIANSVFLILAGIVDSIG 283 (453)
T ss_pred ccCCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecC----cccHHHHHHHHHHhhccccccc
Confidence 34799999999987622 11123334444442 345788899876 3456666777778999999999
Q ss_pred eCHHHHHHhHHH
Q 025807 221 VKFETRYSCIQK 232 (248)
Q Consensus 221 ~N~~E~~~l~g~ 232 (248)
+||.|+..+...
T Consensus 284 mNEqELa~l~~~ 295 (453)
T PRK14039 284 MNEDELAMLANL 295 (453)
T ss_pred CCHHHHHHHHHH
Confidence 999999998765
No 55
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=97.53 E-value=0.00021 Score=59.02 Aligned_cols=137 Identities=14% Similarity=0.101 Sum_probs=77.1
Q ss_pred eEEEeeCCCHHH-HHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccE
Q 025807 79 AFVGKLGDDEFG-YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSI 157 (248)
Q Consensus 79 ~l~~~vG~D~~g-~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
..++.=|.|+.| -=++.+++-..-- ...+..+.+++..++..|. .+... ....+ .+.++ .+...++
T Consensus 5 ~vl~iag~d~~ggaG~~aD~~~~~~~-----~~~~~~~~t~~t~~~~~G~-~v~~~----~~~~l-~~~l~--~l~~~~~ 71 (253)
T PRK12413 5 YILAISGNDIFSGGGLHADLATYTRN-----GLHGFVAVTCLTAMTEKGF-EVFPV----DKEIF-QQQLD--SLKDVPF 71 (253)
T ss_pred eEEEEeeeCCCCHHHHHHHHHHHHHc-----CCccCeeeEEEecccCCce-EEEEC----CHHHH-HHHHH--HhhCCCC
Confidence 456666777643 4456666542111 1123455666666666664 22211 11111 11121 1223333
Q ss_pred EEEc-ccccccchhHHHHHHHHHHHH-HCCCeEEEeCCCCCCCCC--CHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 158 FHYG-SISLIAEPCRSTQLAAMNLAK-ESGSILSYDPNLRLPLWP--SEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 158 v~~~-g~~~~~~~~~~~~~~~~~~a~-~~g~~v~~D~~~~~~~w~--~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
..+. |+.. + .+....+++..+ ++++++++||..+...|. +.+.+++.+.++++++|++++|+.|++.|+|.
T Consensus 72 ~~i~~G~l~-~---~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~ 146 (253)
T PRK12413 72 SAIKIGLLP-N---VEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGK 146 (253)
T ss_pred CEEEECCcC-C---HHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCc
Confidence 3332 3211 2 233344444444 468999999998888783 34556667778899999999999999999984
No 56
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=97.37 E-value=0.00054 Score=57.73 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=55.1
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCC--CeEEEeCCCCCC---CCCCHHHHHHHH-HHhhhhCCEEEeCHHH
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP---LWPSEEAAREGI-MSIWDQADIIKVKFET 225 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~---~w~~~~~~~~~~-~~~l~~~dil~~N~~E 225 (248)
+.++|++ ++|+ +.+....+.+.++++.+++.+ +.+++||..+.. .|.+ +...+.+ ..+++++|++++|..|
T Consensus 72 ~~~~d~v-~~G~-l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~-~~~~~~~~~~ll~~adii~pN~~E 148 (286)
T TIGR00687 72 LNQCDAV-LSGY-LGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVA-PDLLEVYREKAIPVADIITPNQFE 148 (286)
T ss_pred cccCCEE-EECC-CCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeC-hhHHHHHHHhccccccEecCCHHH
Confidence 3578987 4554 334455678888999888775 678999964432 1322 2334445 4588999999999999
Q ss_pred HHHhHHH
Q 025807 226 RYSCIQK 232 (248)
Q Consensus 226 ~~~l~g~ 232 (248)
++.|+|.
T Consensus 149 a~~L~g~ 155 (286)
T TIGR00687 149 LELLTGR 155 (286)
T ss_pred HHHHhCC
Confidence 9999984
No 57
>PRK05756 pyridoxamine kinase; Validated
Probab=97.36 E-value=0.00052 Score=57.87 Aligned_cols=79 Identities=15% Similarity=0.033 Sum_probs=55.6
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCC--CeEEEeCCCCCC---CCCCHHHHHHHHHHhhhhCCEEEeCHHHH
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP---LWPSEEAAREGIMSIWDQADIIKVKFETR 226 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~---~w~~~~~~~~~~~~~l~~~dil~~N~~E~ 226 (248)
+...+.+ ++|+ +.+....+.+.++++++++.+ +.+++||..+.. .|.+.+......+.+++++|++++|+.|+
T Consensus 72 l~~~~~v-~~G~-l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAV-LSGY-LGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEE-EECC-CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 3477866 5554 345556788889999888766 568999986552 24332222333445899999999999999
Q ss_pred HHhHHH
Q 025807 227 YSCIQK 232 (248)
Q Consensus 227 ~~l~g~ 232 (248)
+.|+|.
T Consensus 150 ~~L~g~ 155 (286)
T PRK05756 150 EWLSGR 155 (286)
T ss_pred HHHhCC
Confidence 999983
No 58
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=97.29 E-value=0.0016 Score=53.38 Aligned_cols=74 Identities=11% Similarity=-0.024 Sum_probs=50.4
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHC-CCeEEEeCCCCCCCCC---CHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRLPLWP---SEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~~w~---~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
+.+.+.++.+ . +.+....+.+.+++. ++++++||..+...|. +.+........+++++|++++|..|++.|
T Consensus 68 ~~~~i~~G~l--~---~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGML--G---SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCC--C---CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 5788888543 1 235555666666665 8899999976543221 22222334456779999999999999999
Q ss_pred HHH
Q 025807 230 IQK 232 (248)
Q Consensus 230 ~g~ 232 (248)
+|.
T Consensus 143 ~g~ 145 (242)
T cd01169 143 TGL 145 (242)
T ss_pred hCC
Confidence 984
No 59
>PLN02978 pyridoxal kinase
Probab=97.25 E-value=0.0028 Score=54.02 Aligned_cols=75 Identities=11% Similarity=-0.035 Sum_probs=53.8
Q ss_pred ccEEEEcccccccchhHHHHHHHHHHHHH--CCCeEEEeCCCCC--CCCCCHHHHHHHHH-HhhhhCCEEEeCHHHHHHh
Q 025807 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKE--SGSILSYDPNLRL--PLWPSEEAAREGIM-SIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 155 ~~~v~~~g~~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~~~~--~~w~~~~~~~~~~~-~~l~~~dil~~N~~E~~~l 229 (248)
.+.+.++. +.+....+.+.++++.+++ .++++++||..+. ..|.+ +...+.+. .+++++|++++|+.|++.|
T Consensus 87 ~~ai~~G~--l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~-~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGY--IGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVP-PELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEecc--cCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCC-hhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 56665553 2345566778888888876 4578999998655 23433 33455564 5999999999999999999
Q ss_pred HHH
Q 025807 230 IQK 232 (248)
Q Consensus 230 ~g~ 232 (248)
+|.
T Consensus 164 ~g~ 166 (308)
T PLN02978 164 TGI 166 (308)
T ss_pred hCC
Confidence 984
No 60
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=97.24 E-value=0.0011 Score=55.68 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=53.4
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHH--CCCeEEEeCCCCC---CCCCCHHHHHHHHH-HhhhhCCEEEeCHHHH
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKE--SGSILSYDPNLRL---PLWPSEEAAREGIM-SIWDQADIIKVKFETR 226 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~~~~---~~w~~~~~~~~~~~-~~l~~~dil~~N~~E~ 226 (248)
.++|.++++.+ .+....+.+.+++++.+. .+.++++||.... ..|.+.+ ..+.+. .+++++|++++|..|+
T Consensus 87 ~~~d~i~~G~l--~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~-~~~~~~~~Ll~~advitPN~~Ea 163 (281)
T PRK08176 87 RQLRAVTTGYM--GSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPD-LPEAYRQHLLPLAQGLTPNIFEL 163 (281)
T ss_pred ccCCEEEECCC--CCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECcc-HHHHHHHHhHhhcCEeCCCHHHH
Confidence 47899988754 244445666677766554 4788999997433 2343322 234454 5889999999999999
Q ss_pred HHhHHH
Q 025807 227 YSCIQK 232 (248)
Q Consensus 227 ~~l~g~ 232 (248)
+.|+|.
T Consensus 164 ~~L~g~ 169 (281)
T PRK08176 164 EILTGK 169 (281)
T ss_pred HHHhCC
Confidence 999983
No 61
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.22 E-value=0.0019 Score=57.75 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=50.0
Q ss_pred hhcCccEEEEcccccccc---------hhHHHHHHHHHHHH-HCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEE
Q 025807 151 LIKQGSIFHYGSISLIAE---------PCRSTQLAAMNLAK-ESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIK 220 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~---------~~~~~~~~~~~~a~-~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~ 220 (248)
...++|.+.++|+.++.+ .-.+.+.+.++..+ ..+++|-+...+ ..+.+-.+..+..+++++|.+=
T Consensus 206 ~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As----~~d~~l~~~i~~~ilp~vDSlG 281 (444)
T PF04587_consen 206 IAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELAS----FADEELRKEILEKILPHVDSLG 281 (444)
T ss_dssp HHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE--------SSHHHHHHHHHHHGGGSSEEE
T ss_pred hccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEecc----ccCHHHHHHHHHHhhccccccc
Confidence 345799999999987653 11233334444555 688999999986 3456666677778999999999
Q ss_pred eCHHHHHHhHH
Q 025807 221 VKFETRYSCIQ 231 (248)
Q Consensus 221 ~N~~E~~~l~g 231 (248)
+||+|+..++.
T Consensus 282 mNEqEL~~l~~ 292 (444)
T PF04587_consen 282 MNEQELANLLS 292 (444)
T ss_dssp EEHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999998865
No 62
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.17 E-value=0.009 Score=52.97 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=56.9
Q ss_pred hhhcCccEEEEcccccccch---------hHHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEE
Q 025807 150 NLIKQGSIFHYGSISLIAEP---------CRSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 219 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~---------~~~~~~~~~~~a~~-~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil 219 (248)
+....+|.+.++|+.++.+. -.+...+.++..++ .++++-+...+ ..+.+-.+..+..+++++|.+
T Consensus 205 ~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As----~~~~~l~~~i~~~ilp~vDSl 280 (446)
T TIGR02045 205 EIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFAS----IQNREIRKKVVTNIFPHVDSV 280 (446)
T ss_pred hhhhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecc----cccHHHHHHHHHhhccccccc
Confidence 34467999999999875432 23444555555533 67889999876 335555566677899999999
Q ss_pred EeCHHHHHHhHH
Q 025807 220 KVKFETRYSCIQ 231 (248)
Q Consensus 220 ~~N~~E~~~l~g 231 (248)
=+||.|+..++.
T Consensus 281 GMNE~ELa~ll~ 292 (446)
T TIGR02045 281 GMDEAEIANVLS 292 (446)
T ss_pred cCCHHHHHHHHH
Confidence 999999999874
No 63
>PTZ00344 pyridoxal kinase; Provisional
Probab=97.14 E-value=0.0014 Score=55.58 Aligned_cols=75 Identities=16% Similarity=0.044 Sum_probs=51.7
Q ss_pred ccEEEEcccccccchhHHHHHHHHHHHHHCC--CeEEEeCCC--CCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhH
Q 025807 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNL--RLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCI 230 (248)
Q Consensus 155 ~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~--~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~ 230 (248)
.+++ ++|+.. +....+.+.++++++++++ +++++||.. +...|. .+.+.+.+.++++++|++++|+.|++.|+
T Consensus 78 ~~~v-~sG~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L~ 154 (296)
T PTZ00344 78 YTYV-LTGYIN-SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLLS 154 (296)
T ss_pred CCEE-EECCCC-CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHHh
Confidence 3444 455422 3334455556666666665 589999754 334464 35677888899999999999999999999
Q ss_pred HH
Q 025807 231 QK 232 (248)
Q Consensus 231 g~ 232 (248)
|.
T Consensus 155 g~ 156 (296)
T PTZ00344 155 GV 156 (296)
T ss_pred CC
Confidence 84
No 64
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=97.06 E-value=0.0032 Score=52.08 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=51.3
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCC-eEEEeCCCCC----CCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~----~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~ 228 (248)
+.+.+.++.+ .+.+.+..+++.+++.+. ++++||..+. .++ +.+......+.+++++|++++|..|++.
T Consensus 67 ~~~aikiG~l-----~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTGML-----ASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLL-EEEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEECCc-----CCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCC-CHHHHHHHHHhccccccEecCCHHHHHH
Confidence 4688887743 134667788888888888 6999996432 223 2222223334688999999999999999
Q ss_pred hHHH
Q 025807 229 CIQK 232 (248)
Q Consensus 229 l~g~ 232 (248)
|+|.
T Consensus 141 L~g~ 144 (254)
T TIGR00097 141 LLGT 144 (254)
T ss_pred HhCC
Confidence 9983
No 65
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=96.99 E-value=0.0039 Score=51.91 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=50.2
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCC-eEEEeCCCCC----CCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~----~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~ 228 (248)
+.+.+.++.+ . +.+....+++.+++.+. ++++||..+. ..|. .+......+++++++|++++|..|++.
T Consensus 73 ~~~ai~iG~l---~--~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGML---A--SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLA-DDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 5788887753 1 34556677777777775 7999997443 2332 222223334589999999999999999
Q ss_pred hHHH
Q 025807 229 CIQK 232 (248)
Q Consensus 229 l~g~ 232 (248)
|+|.
T Consensus 147 L~g~ 150 (266)
T PRK06427 147 LTGL 150 (266)
T ss_pred HhCC
Confidence 9984
No 66
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=96.93 E-value=0.0037 Score=51.40 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=53.8
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhh--CCEEEeCHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ--ADIIKVKFETRY 227 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~--~dil~~N~~E~~ 227 (248)
+.++.+|++++.- .+..+...+.+...++.+++.++++++||..... +... .+...+++.. +|++++|..|+.
T Consensus 45 ~~l~~~d~vvi~~-G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~---~~~~-~~~~~~ll~~~~~~ilTPN~~Ea~ 119 (242)
T cd01170 45 ELAKIAGALVINI-GTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA---TSFR-TEVAKELLAEGQPTVIRGNASEIA 119 (242)
T ss_pred HHHHHcCcEEEeC-CCCChHHHHHHHHHHHHHHhcCCCEEEcccccCc---chhH-HHHHHHHHhcCCCeEEcCCHHHHH
Confidence 4678889998853 2334445566667777788999999999964321 1111 1334455554 999999999999
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.|+|.
T Consensus 120 ~L~g~ 124 (242)
T cd01170 120 ALAGL 124 (242)
T ss_pred HHhCC
Confidence 99874
No 67
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=96.91 E-value=0.0025 Score=57.21 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 170 CRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 170 ~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+.+.+..+++.+++.|+++++||..+. .+|. .+........+++++|++++|+.|++.|+|.
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~ 147 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGM 147 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCC
Confidence 357788899999999999999997543 3453 2222334467889999999999999999984
No 68
>PRK12412 pyridoxal kinase; Reviewed
Probab=96.82 E-value=0.0059 Score=50.97 Aligned_cols=73 Identities=8% Similarity=-0.074 Sum_probs=50.5
Q ss_pred ccEEEEcccccccchhHHHHHHHHHHHHHCCCe-EEEeCCCCCCCC---CCHHHHHHHHHHhhhhCCEEEeCHHHHHHhH
Q 025807 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLRLPLW---PSEEAAREGIMSIWDQADIIKVKFETRYSCI 230 (248)
Q Consensus 155 ~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~~w---~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~ 230 (248)
.+.+.++.+ .+.+.+..+++.+++.+.+ +++||....... ...+......+.+++++|++++|+.|++.|+
T Consensus 73 ~~~ikiG~l-----~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 147 (268)
T PRK12412 73 VDALKTGML-----GSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLS 147 (268)
T ss_pred CCEEEECCC-----CCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHh
Confidence 788988754 2346667777778888876 999996432211 0111222334568899999999999999999
Q ss_pred HH
Q 025807 231 QK 232 (248)
Q Consensus 231 g~ 232 (248)
|.
T Consensus 148 g~ 149 (268)
T PRK12412 148 GV 149 (268)
T ss_pred Cc
Confidence 84
No 69
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=96.79 E-value=0.04 Score=48.99 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=54.6
Q ss_pred hhhcCccEEEEcccccccchhH----HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCR----STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFET 225 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~----~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E 225 (248)
+...++|.+.++|+.++.+.+. +.+...++..++.++++=+...... + ...++.+..+++++|-+=+||.|
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~----d-~~~r~~i~~ilp~vDSlGmNE~E 294 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP----D-ETVREEILGLLGKFYSVGLNEVE 294 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc----h-HHHHHHHHhhCccccccccCHHH
Confidence 3456899999999987543222 2333444444556788888887532 3 33566666899999999999999
Q ss_pred HHHhHH
Q 025807 226 RYSCIQ 231 (248)
Q Consensus 226 ~~~l~g 231 (248)
+..+..
T Consensus 295 La~ll~ 300 (453)
T PRK14038 295 LASIME 300 (453)
T ss_pred HHHHHH
Confidence 999886
No 70
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=96.69 E-value=0.03 Score=49.95 Aligned_cols=75 Identities=12% Similarity=-0.012 Sum_probs=53.2
Q ss_pred cCccEEEEcccccccc-h--------hHHHHHHHHHHH--HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 153 KQGSIFHYGSISLIAE-P--------CRSTQLAAMNLA--KESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~-~--------~~~~~~~~~~~a--~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.++|.+.++|+.++.+ . -.+...+.++.. ...++++-+...+. .+.+-.+..+..+++++|.+=+
T Consensus 221 ~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~----~~~~ir~~i~~~ilp~vDSlGm 296 (463)
T PRK03979 221 KMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASI----QNREIRKKIITYILPHVDSVGM 296 (463)
T ss_pred cCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccc----cCHHHHHHHHHhhccccccccC
Confidence 5699999999987544 1 123334444444 33568888888763 3555556666689999999999
Q ss_pred CHHHHHHhHH
Q 025807 222 KFETRYSCIQ 231 (248)
Q Consensus 222 N~~E~~~l~g 231 (248)
||.|+..++.
T Consensus 297 NE~ELa~l~~ 306 (463)
T PRK03979 297 DETEIANILN 306 (463)
T ss_pred CHHHHHHHHH
Confidence 9999998764
No 71
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=96.40 E-value=0.047 Score=44.97 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=41.6
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCC---CCCCCHHHHHHHHH-HhhhhCCEEEeCHHHHHHh
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL---PLWPSEEAAREGIM-SIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~w~~~~~~~~~~~-~~l~~~dil~~N~~E~~~l 229 (248)
..+.+.++.+ .+ .+.+..+.+..++.+.++++||-... ...... ...+.+. .+++++|++.||..|++.|
T Consensus 60 ~~~aikiG~l--~~---~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~-~~~~~~~~~Llp~AdiitPN~~Ea~~L 133 (246)
T PF08543_consen 60 KFDAIKIGYL--GS---AEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDP-DVVEAMREELLPLADIITPNLTEAELL 133 (246)
T ss_dssp C-SEEEE-S---SS---HHHHHHHHHHHHHTTTEEEEE---EETTTECTSSH-HHHHHHHHHCGGG-SEEE-BHHHHHHH
T ss_pred cccEEEEccc--CC---chhhhhHHHHHhccCCCEEEecccccCCCCcCCCH-HHHHHHHhccCCcCeEEeCCHHHHHHH
Confidence 6788888754 22 23344444444557779999994221 011122 3344444 4999999999999999999
Q ss_pred HH
Q 025807 230 IQ 231 (248)
Q Consensus 230 ~g 231 (248)
+|
T Consensus 134 ~g 135 (246)
T PF08543_consen 134 TG 135 (246)
T ss_dssp HT
T ss_pred hC
Confidence 98
No 72
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=96.03 E-value=0.029 Score=46.76 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=51.4
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh--hCCEEEeCHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVKFETRY 227 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~--~~dil~~N~~E~~ 227 (248)
+..+.++.+++. ..+..+...+.+..+++.+++.++++++||-.... +. ...+....+++ +.+++++|..|+.
T Consensus 50 ~~~~~~~alvi~-~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~---~~-~~~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 50 EMAKIAGALVIN-IGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGA---TS-YRTEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHhcCceEEe-CCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCc---ch-hhHHHHHHHHHhcCCcEecCCHHHHH
Confidence 455677888773 33444444455666777788889999999964321 11 11233334444 6899999999999
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.|+|.
T Consensus 125 ~L~g~ 129 (263)
T PRK09355 125 ALAGE 129 (263)
T ss_pred HHhCC
Confidence 99874
No 73
>PRK12616 pyridoxal kinase; Reviewed
Probab=95.92 E-value=0.045 Score=45.75 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=47.5
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCC-CeEEEeCCCCCCCCC---CHHHHHHHHH-HhhhhCCEEEeCHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLRLPLWP---SEEAAREGIM-SIWDQADIIKVKFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~w~---~~~~~~~~~~-~~l~~~dil~~N~~E~~~ 228 (248)
+.+.+.++.+ .+.+.+..+.+..++.+ .++++||-....... .. ...+.++ .+++++|++++|..|++.
T Consensus 74 ~~~aikiG~l-----~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~-~~~~~l~~~L~~~advitpN~~Ea~~ 147 (270)
T PRK12616 74 GVDAMKTGML-----PTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYP-EHAEALREQLAPLATVITPNLFEAGQ 147 (270)
T ss_pred CCCEEEECCC-----CCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCH-HHHHHHHHHhhccceEecCCHHHHHH
Confidence 4677877653 13355566666667666 469999975432110 12 2223343 488899999999999999
Q ss_pred hHHH
Q 025807 229 CIQK 232 (248)
Q Consensus 229 l~g~ 232 (248)
|+|.
T Consensus 148 L~g~ 151 (270)
T PRK12616 148 LSGM 151 (270)
T ss_pred HcCC
Confidence 9873
No 74
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=95.64 E-value=0.059 Score=45.07 Aligned_cols=70 Identities=10% Similarity=-0.058 Sum_probs=47.8
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhH
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCI 230 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~ 230 (248)
.++..|++.+++- +.+. +.+..+++.+++.+.++++|+.. ..+.+.........++++||..|+..|+
T Consensus 89 ~~~~~davvig~G-l~~~---~~~~~l~~~~~~~~~pvVlDa~g--------~~l~~~~~~~~~~~~vItPN~~El~~L~ 156 (272)
T TIGR00196 89 LLERYDVVVIGPG-LGQD---PSFKKAVEEVLELDKPVVLDADA--------LNLLTYDKPKREGEVILTPHPGEFKRLL 156 (272)
T ss_pred hhccCCEEEEcCC-CCCC---HHHHHHHHHHHhcCCCEEEEhHH--------HHHHhhcccccCCCEEECCCHHHHHHHh
Confidence 4577899999763 2222 22667888888899999999852 1112211111346899999999999999
Q ss_pred HH
Q 025807 231 QK 232 (248)
Q Consensus 231 g~ 232 (248)
|.
T Consensus 157 g~ 158 (272)
T TIGR00196 157 GL 158 (272)
T ss_pred CC
Confidence 84
No 75
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=95.42 E-value=0.028 Score=46.74 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=54.5
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCC--CeEEEeCCCCCC--CCCCHHHHHHHHH-HhhhhCCEEEeCHHH
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP--LWPSEEAAREGIM-SIWDQADIIKVKFET 225 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~--~w~~~~~~~~~~~-~~l~~~dil~~N~~E 225 (248)
.+..+|.++.+. +-+......+..++++.|+.+ ..+++||-...+ ++-.. ...+... ++++.+|++.||.-|
T Consensus 70 ~~~~~davltGY--lgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~-~~~~~~~~~lip~AdiiTPN~fE 146 (281)
T COG2240 70 KLGECDAVLTGY--LGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAP-EVAEAYRDELLPLADIITPNIFE 146 (281)
T ss_pred cccccCEEEEcc--CCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeecc-chHHHHHHhhcchhhEeCCCHHH
Confidence 567788886654 345556678888888888874 558899942211 11111 1233334 699999999999999
Q ss_pred HHHhHHH
Q 025807 226 RYSCIQK 232 (248)
Q Consensus 226 ~~~l~g~ 232 (248)
++.|+|.
T Consensus 147 Le~Ltg~ 153 (281)
T COG2240 147 LEILTGK 153 (281)
T ss_pred HHHHhCC
Confidence 9999996
No 76
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=95.29 E-value=0.049 Score=44.93 Aligned_cols=71 Identities=8% Similarity=-0.040 Sum_probs=48.6
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHH-HHHhhhhCCEEEeCHHHHHHh
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREG-IMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~-~~~~l~~~dil~~N~~E~~~l 229 (248)
.+...|++.++.- +.. .+....+++.++++++++++|+..... .... ...+.+.+++++||..|++.|
T Consensus 74 ~~~~~d~v~ig~g-l~~---~~~~~~i~~~~~~~~~pvVlDa~~~~~-------~~~~~~~~~~~~~~iltPn~~E~~~L 142 (254)
T cd01171 74 LLERADAVVIGPG-LGR---DEEAAEILEKALAKDKPLVLDADALNL-------LADEPSLIKRYGPVVLTPHPGEFARL 142 (254)
T ss_pred hhccCCEEEEecC-CCC---CHHHHHHHHHHHhcCCCEEEEcHHHHH-------hhcChhhhccCCCEEECCCHHHHHHH
Confidence 3567889988752 211 156778888888889999999863210 0000 002456799999999999999
Q ss_pred HHH
Q 025807 230 IQK 232 (248)
Q Consensus 230 ~g~ 232 (248)
+|.
T Consensus 143 ~g~ 145 (254)
T cd01171 143 LGA 145 (254)
T ss_pred hCC
Confidence 984
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=95.28 E-value=0.075 Score=43.89 Aligned_cols=78 Identities=15% Similarity=0.041 Sum_probs=51.6
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh--hCCEEEeCHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVKFETRY 227 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~--~~dil~~N~~E~~ 227 (248)
+..+.++.+.+.-= +..+...+.+...++.+++.++++++||-.... +..+ .+....+++ +++++++|..|+.
T Consensus 45 ~~~~~~~al~ik~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~---s~~r-~~~~~~Ll~~~~~~vITpN~~E~~ 119 (249)
T TIGR00694 45 ELAKIAGALVINIG-TLDKESIEAMIAAGKSANELGVPVVLDPVGVGA---TKFR-TETALELLSEGRFAAIRGNAGEIA 119 (249)
T ss_pred HHHHHcCceEEeCC-CCCHHHHHHHHHHHHHHHhcCCCEEEccccccc---chhH-HHHHHHHHhhcCCceeCCCHHHHH
Confidence 44566777777532 223334566677778888889999999964321 1111 233355666 4799999999999
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.|+|.
T Consensus 120 ~L~g~ 124 (249)
T TIGR00694 120 SLAGE 124 (249)
T ss_pred HHhCC
Confidence 99873
No 78
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=94.74 E-value=0.11 Score=43.02 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHCC-CeEEEeCCCCCCC---CCCHHHHHHHHH-HhhhhCCEEEeCHHHHHHhHHH
Q 025807 170 CRSTQLAAMNLAKESG-SILSYDPNLRLPL---WPSEEAAREGIM-SIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 170 ~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~---w~~~~~~~~~~~-~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+.+.+..+.+..++.+ .++++||-..... ... ++..+.+. .++++++++.||..|++.|+|.
T Consensus 83 ~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~-~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~ 149 (263)
T COG0351 83 SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLD-EEAVEALREELLPLATVVTPNLPEAEALSGL 149 (263)
T ss_pred CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccC-hHHHHHHHHHhhccCeEecCCHHHHHHHcCC
Confidence 3466777778888888 7799999311100 112 23344444 7999999999999999999993
No 79
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=94.71 E-value=0.2 Score=41.12 Aligned_cols=78 Identities=10% Similarity=0.002 Sum_probs=52.7
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhh--hhCCEEEeCHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW--DQADIIKVKFETRY 227 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l--~~~dil~~N~~E~~ 227 (248)
+..+.++.+.+.-- ...+...+.+....+.+++.++++++||-..- ..+.-.+...+++ .+.++++.|..|..
T Consensus 45 e~~~~a~al~iNiG-Tl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvG----as~~R~~~~~~LL~~~~~~vIrGN~sEI~ 119 (246)
T PF02110_consen 45 EFASIADALVINIG-TLTDERIEAMKKAAKAANELGIPVVLDPVGVG----ASKFRTEFALELLNNYKPTVIRGNASEIA 119 (246)
T ss_dssp HHHHCTSEEEEEST-TSSHHHHHHHHHHHHHHHHTT--EEEE-TTBT----TBHHHHHHHHHHHCHS--SEEEEEHHHHH
T ss_pred HHHHHcCEEEEECC-CCCHhHHHHHHHHHHHHHHcCCCEEEeCcccC----CcHHHHHHHHHHHHhCCCcEEEeCHHHHH
Confidence 45566777877542 23445568888999999999999999994321 1133356677787 48999999999999
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.|.|.
T Consensus 120 aLag~ 124 (246)
T PF02110_consen 120 ALAGE 124 (246)
T ss_dssp HHHTC
T ss_pred HHhCc
Confidence 99874
No 80
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=94.70 E-value=0.17 Score=46.20 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=48.0
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCe-EEEeCCCCCC---CCCCHHHHHHHH-HHhhhhCCEEEeCHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLRLP---LWPSEEAAREGI-MSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~---~w~~~~~~~~~~-~~~l~~~dil~~N~~E~~~ 228 (248)
+.+.+.++.+ . +.+.+..+++.+++.+.+ +++||-.... .+.+. ...+.+ ..+++++|+++||..|++.
T Consensus 78 ~~~aik~G~l---~--~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~-~~~~~l~~~Ll~~adiitPN~~Ea~~ 151 (502)
T PLN02898 78 PVDVVKTGML---P--SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGP-SILSALREELLPLATIVTPNVKEASA 151 (502)
T ss_pred CCCEEEECCc---C--CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCH-HHHHHHHHhhhccCeEEcCCHHHHHH
Confidence 4677776643 1 256667777777877775 9999953211 11121 223334 4688999999999999999
Q ss_pred hHH
Q 025807 229 CIQ 231 (248)
Q Consensus 229 l~g 231 (248)
|+|
T Consensus 152 L~g 154 (502)
T PLN02898 152 LLG 154 (502)
T ss_pred HhC
Confidence 987
No 81
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=94.35 E-value=0.19 Score=46.31 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=48.5
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL----PLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
..+.+.++.+ .+....+.+.++++..+ +.+|++||..+. .++. +...+.+.++++++|++++|..|++.|
T Consensus 98 ~~~aikiG~l--~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~~--~~~~~~~~~Ll~~advItPN~~Ea~~L 171 (530)
T PRK14713 98 TVDAVKIGML--GDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLLE--EDAEAALRELVPRADLITPNLPELAVL 171 (530)
T ss_pred CCCEEEECCc--CCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCCC--HHHHHHHHHHhhhhheecCChHHHHHH
Confidence 3577777532 23333455555554432 346999997542 3332 345677778999999999999999999
Q ss_pred HHH
Q 025807 230 IQK 232 (248)
Q Consensus 230 ~g~ 232 (248)
+|.
T Consensus 172 tg~ 174 (530)
T PRK14713 172 LGE 174 (530)
T ss_pred hCC
Confidence 973
No 82
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=94.01 E-value=0.21 Score=45.68 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCC----CCCCCC--HHHHHHHHH-HhhhhCCEEEeCHHHHHHhHHH
Q 025807 171 RSTQLAAMNLAKESGSILSYDPNLR----LPLWPS--EEAAREGIM-SIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~~~~----~~~w~~--~~~~~~~~~-~~l~~~dil~~N~~E~~~l~g~ 232 (248)
.+.+..+++.++ +.++++||... ..+|.. .+...+.++ .+++++|++++|..|++.|+|.
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~ 377 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGR 377 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCC
Confidence 455556666554 67899998643 223321 111122332 6889999999999999999984
No 83
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=93.75 E-value=0.52 Score=37.95 Aligned_cols=67 Identities=4% Similarity=-0.077 Sum_probs=49.1
Q ss_pred cEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe-----CHHHHHHhH
Q 025807 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----KFETRYSCI 230 (248)
Q Consensus 156 ~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~-----N~~E~~~l~ 230 (248)
.-|.++|- -+-...+.+.++++.+++.|+.+++|.+...+ .+.+.++++++|.+.. +.+..+.++
T Consensus 40 gGVt~SGG--EPllq~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~~t 109 (213)
T PRK10076 40 GGVTLSGG--EVLMQAEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARDVV 109 (213)
T ss_pred CEEEEeCc--hHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHHHH
Confidence 45666552 23345688899999999999999999987543 3466778888888765 666677888
Q ss_pred HH
Q 025807 231 QK 232 (248)
Q Consensus 231 g~ 232 (248)
|.
T Consensus 110 G~ 111 (213)
T PRK10076 110 KM 111 (213)
T ss_pred CC
Confidence 74
No 84
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=93.53 E-value=0.58 Score=38.50 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=55.9
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhh--CCEEEeCHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ--ADIIKVKFETRY 227 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~--~dil~~N~~E~~ 227 (248)
+..+-++.+.+.-- .++....+.++..++.+++.|.|+++||-..- -...-++...+++.+ .++++.|..|..
T Consensus 51 e~~kia~AL~INIG-TL~~~~~~~m~~A~~~An~~~~PvvLDPVgvg----At~~R~~~~~~LL~~~~~~~IrGN~sEI~ 125 (265)
T COG2145 51 EFAKIADALLINIG-TLSAERIQAMRAAIKAANESGKPVVLDPVGVG----ATKFRTKFALELLAEVKPAAIRGNASEIA 125 (265)
T ss_pred HHHHhccceEEeec-cCChHHHHHHHHHHHHHHhcCCCEEecCccCC----chHHHHHHHHHHHHhcCCcEEeccHHHHH
Confidence 34455666665432 23455678888999999999999999995321 123336677778874 699999999999
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.|.|.
T Consensus 126 ~Lag~ 130 (265)
T COG2145 126 ALAGE 130 (265)
T ss_pred HHhcc
Confidence 99864
No 85
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=93.35 E-value=0.32 Score=46.79 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=48.5
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHC-CCeEEEeCCCC----CCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLR----LPLWPSEEAAREGIMSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~----~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~ 228 (248)
..+.+-++-+ . +.+....+++.+++. +.+|++||... ..++. +...+.++++++++|++++|..|+..
T Consensus 310 ~~~aiKiGmL---~--s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~--~~~~~~l~~Llp~adlItPN~~Ea~~ 382 (755)
T PRK09517 310 TVDAVKLGML---G--SADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLD--ADATEALRRLAVHVDVVTPNIPELAV 382 (755)
T ss_pred CCCEEEECCC---C--CHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCC--HHHHHHHHHHhCcccCccCCHHHHHH
Confidence 3567766643 1 235556666766664 56799999643 22232 23345567799999999999999999
Q ss_pred hHH
Q 025807 229 CIQ 231 (248)
Q Consensus 229 l~g 231 (248)
|+|
T Consensus 383 L~g 385 (755)
T PRK09517 383 LCG 385 (755)
T ss_pred HhC
Confidence 998
No 86
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=92.14 E-value=1.3 Score=37.97 Aligned_cols=164 Identities=9% Similarity=0.121 Sum_probs=86.5
Q ss_pred CccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCC-------
Q 025807 55 AFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGE------- 127 (248)
Q Consensus 55 ~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~------- 127 (248)
...+..||.+.-+|.-...-| .++++|..|.-... -|.-.-|.+..-.+ ++... -+++-.+.|+
T Consensus 137 R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~-----~L~P~~~R~~~~~I-~~Ddi--HlILEYK~Gd~~G~~VA 207 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLR-----PLLPKEIRLAGDEI-PNDDI--HLILEYKAGDKWGPYVA 207 (478)
T ss_pred hhhhhccCCchHHHHHHHhcc-ceeeecccccchhc-----cccchhhhcccCcC-cCCce--EEEEEeccCCccccccc
Confidence 345788999888877777666 68899988865322 12111122221111 11111 1111112222
Q ss_pred ---ceEEEecCCCccccc-CcccchHh-hhcCccEEEEcccccccchhHHHHHHHHHHHH------HCCCeEEEeCCCCC
Q 025807 128 ---REFLFFRHPSADMLL-CESELDKN-LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK------ESGSILSYDPNLRL 196 (248)
Q Consensus 128 ---r~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~------~~g~~v~~D~~~~~ 196 (248)
.+++.+.+.. +..+ -.+.+... ..=+.|++.++|..+..-.+.+.-.+-+++.+ -.|+++=+.+.+
T Consensus 208 P~anR~I~~~D~~-n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS-- 284 (478)
T KOG4184|consen 208 PRANRYILHNDRN-NPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELAS-- 284 (478)
T ss_pred ccccceeeecCCC-ChHHHHHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhH--
Confidence 2233321111 1111 11222221 23468999999987654333332222222221 246666677654
Q ss_pred CCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 197 PLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 197 ~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
+.+.+-..+.+..+++++|=+=+||.|+.-|...
T Consensus 285 --~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q~ 318 (478)
T KOG4184|consen 285 --MTNRELMSSIVHQVLPYVDSLGLNEQELLFLTQS 318 (478)
T ss_pred --HHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHH
Confidence 3344555666778999999999999999988753
No 87
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=91.71 E-value=0.72 Score=39.55 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=29.9
Q ss_pred eEEEeCCC----CCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHH
Q 025807 187 ILSYDPNL----RLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 187 ~v~~D~~~----~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g 231 (248)
++++||-. ...+..+.+......+.++++++++.||..|+..|+|
T Consensus 107 ~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g 155 (321)
T PTZ00493 107 LVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILE 155 (321)
T ss_pred eEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhC
Confidence 48999941 1111111122233345699999999999999999997
No 88
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=2.5 Score=35.18 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=51.8
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe-----CHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----KFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~-----N~~E~~~ 228 (248)
..+-|.++|- -.....+.+.++++.+++.|+.+++|.+.... ++...++++.+|.+.. +++-.+.
T Consensus 83 ~~~gvt~SGG--EP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGG--EPTLQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECC--cchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 5677777762 34467799999999999999999999987543 3445677788888764 4444777
Q ss_pred hHHHH
Q 025807 229 CIQKM 233 (248)
Q Consensus 229 l~g~~ 233 (248)
++|..
T Consensus 153 ~tg~~ 157 (260)
T COG1180 153 LTGAD 157 (260)
T ss_pred HhCCC
Confidence 77753
No 89
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=89.30 E-value=0.33 Score=40.07 Aligned_cols=81 Identities=12% Similarity=-0.034 Sum_probs=46.9
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCC--CeEEEeCCCCCC--CCCCHHHHHHHHHHhh-hhCCEEEeCHHH
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG--SILSYDPNLRLP--LWPSEEAAREGIMSIW-DQADIIKVKFET 225 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~--~w~~~~~~~~~~~~~l-~~~dil~~N~~E 225 (248)
.+...+.+.. || +.+......+.+++++.++.+ ...++||-.... ++-+ ++.-+..++++ +.+|++.||.-|
T Consensus 78 n~~~Y~~vLT-GY-~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~-eelipvYr~~i~~ladiiTPNqFE 154 (308)
T KOG2599|consen 78 NLNKYDAVLT-GY-LPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVP-EELIPVYRDLIIPLADIITPNQFE 154 (308)
T ss_pred cccccceeee-ec-cCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEecc-HHHHHHHHHhhcchhhhcCCcchh
Confidence 3456676644 44 223334455556666666654 567788842211 1112 22333344444 469999999999
Q ss_pred HHHhHHHHH
Q 025807 226 RYSCIQKML 234 (248)
Q Consensus 226 ~~~l~g~~~ 234 (248)
++.|+|..+
T Consensus 155 ~EiLtg~~I 163 (308)
T KOG2599|consen 155 AEILTGMEI 163 (308)
T ss_pred hhhhcCCee
Confidence 999999643
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=82.48 E-value=4.6 Score=33.40 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=56.9
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
..+++-..+.++--...++.....+..+++.++++++++++|-... |-= ++..+.+..-++ .-|+.||..|+.+|
T Consensus 97 k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL---~Lv-~q~~e~l~~~~~-~viLTPNvvEFkRL 171 (306)
T KOG3974|consen 97 KLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGL---WLV-EQLPERLIGGYP-KVILTPNVVEFKRL 171 (306)
T ss_pred HHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCce---Eeh-hhchhhhhccCc-eeeeCCcHHHHHHH
Confidence 4678888888875445778888999999999999999999999642 431 111221111112 25889999999999
Q ss_pred HHHHH
Q 025807 230 IQKML 234 (248)
Q Consensus 230 ~g~~~ 234 (248)
++..+
T Consensus 172 cd~~l 176 (306)
T KOG3974|consen 172 CDAEL 176 (306)
T ss_pred HHHhh
Confidence 98755
No 91
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=78.07 E-value=13 Score=28.85 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=48.7
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRY 227 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~ 227 (248)
+++.+...|+.+ +.+.+..+-+..+++|+.|+.||-. ..++.+..+.+.++.+...+....++.
T Consensus 22 d~~~I~T~Gs~i----~~~~i~~i~~~~~~rgVIIfTDpD~------~GekIRk~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 22 DVDVIETNGSAL----KDETINLIKKAQKKQGVIILTDPDF------PGEKIRKKIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred CceEEEECCCcc----CHHHHHHHHHHhhcCCEEEEeCCCC------chHHHHHHHHHHCCCCeEEeeeHHhcC
Confidence 478898888643 4455555656667899999999965 346789999999998888888877764
No 92
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=74.21 E-value=11 Score=27.12 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=52.0
Q ss_pred EEeeC-CCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEE
Q 025807 81 VGKLG-DDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFH 159 (248)
Q Consensus 81 ~~~vG-~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 159 (248)
++.+| ....|..+++.|.++ -+...+....... ..|++--..+........+..+....+.+.+.|++.
T Consensus 2 V~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEH-PDFELVALVSSSR---------SAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTT---------TTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred EEEECCCCHHHHHHHHHHhcC-CCccEEEeeeecc---------ccCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 56788 788999999999882 2222111111101 011111000000001111222223345568999998
Q ss_pred EcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCC
Q 025807 160 YGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLP 197 (248)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~ 197 (248)
++. +.....++..+..+.|+ .++|.+....
T Consensus 72 ~a~-------~~~~~~~~~~~~~~~g~-~ViD~s~~~R 101 (121)
T PF01118_consen 72 LAL-------PHGASKELAPKLLKAGI-KVIDLSGDFR 101 (121)
T ss_dssp E-S-------CHHHHHHHHHHHHHTTS-EEEESSSTTT
T ss_pred ecC-------chhHHHHHHHHHhhCCc-EEEeCCHHHh
Confidence 763 34566778888888888 7888876543
No 93
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=72.37 E-value=32 Score=25.88 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=43.1
Q ss_pred cEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHH
Q 025807 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETR 226 (248)
Q Consensus 156 ~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~ 226 (248)
+.|.++|= +...+.+.++++.+++.|..+.++.+... .+...++++++|+++....+.
T Consensus 63 ~gVt~SGG----El~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 63 SCVLFLGG----EWNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRWIH 120 (147)
T ss_pred CEEEEech----hcCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChHHH
Confidence 45666663 25667888999999999999999987532 224567789999999877543
No 94
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=64.61 E-value=1e+02 Score=27.33 Aligned_cols=79 Identities=5% Similarity=-0.045 Sum_probs=56.4
Q ss_pred hhhcCccEEEEccccccc----chh-----HHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEE
Q 025807 150 NLIKQGSIFHYGSISLIA----EPC-----RSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADII 219 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~----~~~-----~~~~~~~~~~a~~-~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil 219 (248)
+..+..|...+||+.... +-+ .+...+-++..++ .++++=+...+. .+..-.++.+..+++.++=+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~----~d~~irk~i~~~il~~v~Sv 296 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASI----QDRKIRKEILTNILSIVYSV 296 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEeccc----ccHHHHHHHHHHHHhhhhhc
Confidence 456779999999987631 122 2334455566666 778888888763 34555566777799999999
Q ss_pred EeCHHHHHHhHHH
Q 025807 220 KVKFETRYSCIQK 232 (248)
Q Consensus 220 ~~N~~E~~~l~g~ 232 (248)
=+|+.|+..++..
T Consensus 297 GldE~ElA~vl~v 309 (466)
T COG4809 297 GLDEVELANVLNV 309 (466)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999888753
No 95
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=64.53 E-value=75 Score=28.60 Aligned_cols=21 Identities=24% Similarity=0.045 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCeEEEeCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.++.+.|+++|+++++|-..
T Consensus 166 i~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 166 FKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 457888899999999999974
No 96
>PRK15452 putative protease; Provisional
Probab=63.58 E-value=59 Score=29.37 Aligned_cols=86 Identities=8% Similarity=-0.041 Sum_probs=52.4
Q ss_pred cccchHhhhcCccEEEEccccc-----ccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh-hCC
Q 025807 144 ESELDKNLIKQGSIFHYGSISL-----IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QAD 217 (248)
Q Consensus 144 ~~~~~~~~~~~~~~v~~~g~~~-----~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~-~~d 217 (248)
.+.+...+-.++|.||+++-.+ ..+...+.+.++++.|+++|+++.+-++.... -...+.+.+.+..+.. .+|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~-e~el~~~~~~l~~l~~~gvD 91 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPH-NAKLKTFIRDLEPVIAMKPD 91 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCC-HHHHHHHHHHHHHHHhCCCC
Confidence 3444455667899999976322 12445577889999999999999888764322 1122233444444444 377
Q ss_pred EEEeCHHHHHHhH
Q 025807 218 IIKVKFETRYSCI 230 (248)
Q Consensus 218 il~~N~~E~~~l~ 230 (248)
-+++..-.+-.+.
T Consensus 92 gvIV~d~G~l~~~ 104 (443)
T PRK15452 92 ALIMSDPGLIMMV 104 (443)
T ss_pred EEEEcCHHHHHHH
Confidence 6666555544443
No 97
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=63.41 E-value=15 Score=24.07 Aligned_cols=42 Identities=17% Similarity=0.345 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCceeEEEeeC------CCHHHHHHHHHHHHCCCCc
Q 025807 63 APANVAVGISRLGGSSAFVGKLG------DDEFGYMLANILKENNVDT 104 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG------~D~~g~~i~~~L~~~gI~~ 104 (248)
.|.=+|..|+++|.+++++..-. +....+.+.+.|++.||+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v 57 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEV 57 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEE
Confidence 35667889999999999987643 2236788899999999984
No 98
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=61.42 E-value=9.7 Score=33.91 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=32.6
Q ss_pred CeEEEeCC---CCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhHHH
Q 025807 186 SILSYDPN---LRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCIQK 232 (248)
Q Consensus 186 ~~v~~D~~---~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~ 232 (248)
.++++||- ..-......+...-..+++++++|++.+|--|+-.|++.
T Consensus 120 ~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~ 169 (523)
T KOG2598|consen 120 PKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKK 169 (523)
T ss_pred cceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhh
Confidence 46889982 000111223334556778999999999999999999985
No 99
>PRK05967 cystathionine beta-lyase; Provisional
Probab=60.54 E-value=1e+02 Score=27.34 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=28.7
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
++.++|++....- +......+.++.+.|+++|+.+++|-...
T Consensus 148 ~~TklV~lesPsN-P~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 148 PNTKVVHTEAPGS-NTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred cCceEEEEECCCC-CCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 3466777765332 12344556788899999999999998643
No 100
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.12 E-value=1e+02 Score=26.89 Aligned_cols=85 Identities=14% Similarity=0.048 Sum_probs=57.3
Q ss_pred chHhhhcCccEEEEccc--cc---ccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh-hCCEEE
Q 025807 147 LDKNLIKQGSIFHYGSI--SL---IAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QADIIK 220 (248)
Q Consensus 147 ~~~~~~~~~~~v~~~g~--~~---~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~-~~dil~ 220 (248)
+...+-..+|.||++.- .+ ..+.+.+.+.++++.++++|+++.+-.+.... -...+.+.+.+..+.. .+|-++
T Consensus 19 l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~-~~~~~~~~~~l~~l~e~GvDavi 97 (347)
T COG0826 19 LKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLH-NDELETLERYLDRLVELGVDAVI 97 (347)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccc-cchhhHHHHHHHHHHHcCCCEEE
Confidence 33344566999999864 12 12467788999999999999987766654332 1123334566666666 799999
Q ss_pred eCHHHHHHhHHH
Q 025807 221 VKFETRYSCIQK 232 (248)
Q Consensus 221 ~N~~E~~~l~g~ 232 (248)
+++--+-.+..+
T Consensus 98 v~Dpg~i~l~~e 109 (347)
T COG0826 98 VADPGLIMLARE 109 (347)
T ss_pred EcCHHHHHHHHH
Confidence 988777766553
No 101
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=57.88 E-value=95 Score=27.32 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=51.1
Q ss_pred EEeeC-CCHHHHHHHH-HHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCccc-chHhhhcCccE
Q 025807 81 VGKLG-DDEFGYMLAN-ILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESE-LDKNLIKQGSI 157 (248)
Q Consensus 81 ~~~vG-~D~~g~~i~~-~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (248)
++.|| ...-|+.+++ .|++..+....+........+...... .|+. ..... .+.+.+++.|+
T Consensus 4 VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f--~g~~-------------~~v~~~~~~~~~~~~Di 68 (369)
T PRK06598 4 VGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSF--GGKE-------------GTLQDAFDIDALKKLDI 68 (369)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCccccc--CCCc-------------ceEEecCChhHhcCCCE
Confidence 45666 3567888997 888877774444332221122111111 1111 01111 11233467899
Q ss_pred EEEcccccccchhHHHHHHHHHHHHHCCCe-EEEeCCCC
Q 025807 158 FHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLR 195 (248)
Q Consensus 158 v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~ 195 (248)
++++. +.+...++..++.+.|.+ +++|.+..
T Consensus 69 vf~a~-------~~~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 69 IITCQ-------GGDYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred EEECC-------CHHHHHHHHHHHHhCCCCeEEEECChH
Confidence 87763 345667888888888974 78888743
No 102
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=56.45 E-value=32 Score=27.81 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=62.0
Q ss_pred eeCCCH--HHHHHHHHHHHCCCCccceEEcCCCCceEEEEE---Ee---cCCCceEEEecCCCcccccCcccchHh-hhc
Q 025807 83 KLGDDE--FGYMLANILKENNVDTSGVRYDSTARTALAFVT---LR---ADGEREFLFFRHPSADMLLCESELDKN-LIK 153 (248)
Q Consensus 83 ~vG~D~--~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~---i~---~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (248)
.+..|. +++ -++.+++.|.+.-++-+-++...+-...- +. +..+..+-.+ -.-..++.+-.. .-.
T Consensus 10 ILsaD~~~l~~-el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvH-----LMV~~p~~~i~~fa~a 83 (220)
T COG0036 10 ILSADFARLGE-ELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVH-----LMVENPDRYIEAFAKA 83 (220)
T ss_pred hhhCCHhHHHH-HHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEE-----EecCCHHHHHHHHHHh
Confidence 345552 333 35677788999877766555333211110 00 0011111111 000123322223 234
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
++|++. ...+ ........+++.|+.|++..+-+++.-+ -+.++++++.+|++.+
T Consensus 84 gad~It-----~H~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--------~~~i~~~l~~vD~Vll 137 (220)
T COG0036 84 GADIIT-----FHAE-ATEHIHRTIQLIKELGVKAGLVLNPATP--------LEALEPVLDDVDLVLL 137 (220)
T ss_pred CCCEEE-----EEec-cCcCHHHHHHHHHHcCCeEEEEECCCCC--------HHHHHHHHhhCCEEEE
Confidence 578873 3333 3345678889999999985544444322 4577888999998874
No 103
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=55.87 E-value=24 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 61 GGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 61 GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
+|.+...+..+...|.++.+.+.+|.. .++.|++.||..
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 456778899999999999999998877 467888899985
No 104
>PRK08114 cystathionine beta-lyase; Provisional
Probab=53.51 E-value=96 Score=27.53 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=28.6
Q ss_pred CccccCCChHHHHHHHHHHcCCceeEEEeeCCCHHH---HHHHHHHHHCCCCccce
Q 025807 55 AFKKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFG---YMLANILKENNVDTSGV 107 (248)
Q Consensus 55 ~~~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g---~~i~~~L~~~gI~~~~v 107 (248)
.......|.++..+..++.+...-.++.. ++.+| ..+.+.+++.||++.++
T Consensus 79 ~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 79 GCALYPCGAAAVANAILAFVEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred eEEEEhHHHHHHHHHHHHHcCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 33455568887777777766432223322 33333 34445678888886544
No 105
>PRK09028 cystathionine beta-lyase; Provisional
Probab=52.66 E-value=1.2e+02 Score=26.93 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=28.8
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
++.++++++..... ......+.++.+.|+++|+.+++|-...
T Consensus 145 ~~TklV~lespsNP-tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 145 PNTKVLFLESPGSI-TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred cCceEEEEECCCCC-CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 35677777654321 1234556788899999999999998653
No 106
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=51.21 E-value=1.2e+02 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCeEEEeCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.++.+.|+++|+.+++|-..
T Consensus 165 l~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 356677777888888888753
No 107
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=50.30 E-value=72 Score=24.95 Aligned_cols=58 Identities=10% Similarity=-0.072 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCCCeEE-EeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe-CHHHHHHh
Q 025807 172 STQLAAMNLAKESGSILS-YDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-KFETRYSC 229 (248)
Q Consensus 172 ~~~~~~~~~a~~~g~~v~-~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~-N~~E~~~l 229 (248)
|..-.++..++++|++++ +|-..+........+++.....+++..|.+.+ ++++++.+
T Consensus 105 ElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~ 164 (186)
T PF04413_consen 105 ELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERF 164 (186)
T ss_dssp ---HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHH
T ss_pred ccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHH
Confidence 444578899999999866 45433222222223456678889999998877 55555544
No 108
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=49.46 E-value=64 Score=22.34 Aligned_cols=62 Identities=5% Similarity=0.031 Sum_probs=36.5
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCC---CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESG---SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g---~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.+++|++.+...+...... ......+.++++.+ .+|++- +... +..++.+....+.+|+++.
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae-~k~~~~i~~l~~~~~~~~~ivv~-GC~a------q~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAE-QKSRNRIRKLKKLKKPGAKIVVT-GCMA------QRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cccCCEEEEEcCCCCcHHH-HHHHHHHHHHHHhcCCCCEEEEE-eCcc------ccChHHHHhhCCCeEEEeC
Confidence 4688999998876655443 33444444444443 444443 3322 2235677888888998863
No 109
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=48.97 E-value=63 Score=26.33 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=35.1
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.++|++.+ ..+.........++..|+.|+++.+-+++.-+ .+.+.++++.+|++.+
T Consensus 81 aGad~it~-----H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--------~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 81 AGADFITL-----HPETINGQAFRLIDEIRRAGMKVGLVLNPETP--------VESIKYYIHLLDKITV 136 (229)
T ss_pred cCCCEEEE-----CccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--------HHHHHHHHHhcCEEEE
Confidence 46787633 22211123457889999999886655554322 4577888888997763
No 110
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=48.77 E-value=1e+02 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCccccCCChHHHHHHHHHHc--CCceeEEEeeCCCHHH---HHHHHHHHHCCCCccce
Q 025807 53 APAFKKAPGGAPANVAVGISRL--GGSSAFVGKLGDDEFG---YMLANILKENNVDTSGV 107 (248)
Q Consensus 53 ~~~~~~~~GG~a~N~a~ala~l--G~~v~l~~~vG~D~~g---~~i~~~L~~~gI~~~~v 107 (248)
+....-.+.|.++-.+..++.+ |.++.... |.|| +.+...+++.||+++++
T Consensus 78 ~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~----~~YG~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 78 GEDAFAFSSGMAAISTALLALLKAGDHVLLPD----DLYGGTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred CCcEEEecCcHHHHHHHHHHhcCCCCEEEecC----CccchHHHHHHHHHHhcCeEEEEE
Confidence 3344556667777666666666 33333322 2233 44556667788877655
No 111
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=47.49 E-value=1.3e+02 Score=25.93 Aligned_cols=84 Identities=10% Similarity=0.067 Sum_probs=49.2
Q ss_pred C-CCHHHHHHHHHHHHCCCCccceEEcCC--CCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEEc
Q 025807 85 G-DDEFGYMLANILKENNVDTSGVRYDST--ARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYG 161 (248)
Q Consensus 85 G-~D~~g~~i~~~L~~~gI~~~~v~~~~~--~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 161 (248)
| ...-|+.+++.|++.+.....+..... ...+..+.+ .|+ .+..+.+....+++.|+++++
T Consensus 9 GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f---~g~-------------~~~V~~l~~~~f~~vDia~fa 72 (322)
T PRK06901 9 AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF---NNK-------------AVEQIAPEEVEWADFNYVFFA 72 (322)
T ss_pred ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEE---CCE-------------EEEEEECCccCcccCCEEEEc
Confidence 5 356899999999999988764433222 112211111 111 123333444445789998773
Q ss_pred ccccccchhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 162 SISLIAEPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
| .+...++...+.++|+.|+-+.
T Consensus 73 g--------~~~s~~~ap~a~~aG~~VIDnS 95 (322)
T PRK06901 73 G--------KMAQAEHLAQAAEAGCIVIDLY 95 (322)
T ss_pred C--------HHHHHHHHHHHHHCCCEEEECC
Confidence 3 2456678888888887655444
No 112
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=47.28 E-value=13 Score=24.98 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=34.2
Q ss_pred ccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 58 KAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 58 ~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
...+|.+...+..|...|+++.+++.+|.. ..+.|++.||.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~iG~~-----~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGIGEG-----AFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCSCHH-----HHHHHHHTTSEE
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCCCHH-----HHHHHHHCCCEE
Confidence 345577788888888899999999988655 678999999985
No 113
>PRK07582 cystathionine gamma-lyase; Validated
Probab=46.73 E-value=91 Score=27.16 Aligned_cols=53 Identities=19% Similarity=0.048 Sum_probs=25.2
Q ss_pred ccccCCChHHHHHHHHHHcCC-ceeEEEeeCCCHHHHHHHHHHHHCCCCccceE
Q 025807 56 FKKAPGGAPANVAVGISRLGG-SSAFVGKLGDDEFGYMLANILKENNVDTSGVR 108 (248)
Q Consensus 56 ~~~~~GG~a~N~a~ala~lG~-~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~ 108 (248)
.....+|+.++.+...+.++- +..++..-+-......+...++..|+++.++.
T Consensus 68 ~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 68 ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred EEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 344556666655555554532 22333221111222333445677888876553
No 114
>PRK05968 hypothetical protein; Provisional
Probab=46.71 E-value=2e+02 Score=25.24 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=27.2
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
.+.+++++...+. .......+.++.+.++++|+++++|-..
T Consensus 146 ~~tklV~ie~pt~-~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 146 PGAKLLYLESPTS-WVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred ccCCEEEEECCCC-CCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4567777654322 1223355667888889999999999864
No 115
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=46.39 E-value=34 Score=26.33 Aligned_cols=72 Identities=13% Similarity=-0.070 Sum_probs=41.3
Q ss_pred CccEEEEcccccccchhH-HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 154 QGSIFHYGSISLIAEPCR-STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
+.|++.+....+..+.+. -....+....+-..+.+++|+.. |.........+.+-+.++|++..|+.+...-
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~----~~~~~~~~~~~~~Qi~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATN----FDELENIPELLREQIAFADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTT----HGGHTTHCHHHHHHHCT-SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEecccc----ccccccchhhhhhcchhcCEEEEeccccCCh
Confidence 568888754333222222 11223333444456778899954 3333445677888999999999999765543
No 116
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=46.17 E-value=1.3e+02 Score=27.03 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=73.3
Q ss_pred HHHcC-CceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH
Q 025807 71 ISRLG-GSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK 149 (248)
Q Consensus 71 la~lG-~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~ 149 (248)
-+.+| ..-.-+-.||..+.|+.+.+.|.+.|+..-.+ .+-+-+|..-.....++. ....+++ .
T Consensus 170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I--------------aNRT~erA~~La~~~~~~-~~~l~el-~ 233 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI--------------ANRTLERAEELAKKLGAE-AVALEEL-L 233 (414)
T ss_pred HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE--------------EcCCHHHHHHHHHHhCCe-eecHHHH-H
Confidence 34445 46666777899999999999999998863211 111222221111111111 0122222 2
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC 229 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l 229 (248)
..+.++|++..+.-...+-...+.+...++. +++ .+++|.+....+ -...-...++...+-++++.+
T Consensus 234 ~~l~~~DvVissTsa~~~ii~~~~ve~a~~~-r~~--~livDiavPRdi----------e~~v~~l~~v~l~~iDDL~~i 300 (414)
T COG0373 234 EALAEADVVISSTSAPHPIITREMVERALKI-RKR--LLIVDIAVPRDV----------EPEVGELPNVFLYTIDDLEEI 300 (414)
T ss_pred HhhhhCCEEEEecCCCccccCHHHHHHHHhc-ccC--eEEEEecCCCCC----------CccccCcCCeEEEehhhHHHH
Confidence 4678999998876444444444444444333 222 799999743221 122334566777788888777
Q ss_pred HHH
Q 025807 230 IQK 232 (248)
Q Consensus 230 ~g~ 232 (248)
...
T Consensus 301 v~~ 303 (414)
T COG0373 301 VEE 303 (414)
T ss_pred HHH
Confidence 653
No 117
>PRK10565 putative carbohydrate kinase; Provisional
Probab=46.09 E-value=53 Score=30.22 Aligned_cols=65 Identities=8% Similarity=-0.043 Sum_probs=39.7
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHh--hhhCCEEEeCHHHHHHh
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSI--WDQADIIKVKFETRYSC 229 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~--l~~~dil~~N~~E~~~l 229 (248)
++.++.+.++-=...++ ....+++.+++.++++++|+... ..+... .....+++||..|+..|
T Consensus 318 ~~~~~a~viGpGlg~~~----~~~~~~~~~~~~~~P~VLDAdaL-----------~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 318 LEWADVVVIGPGLGQQE----WGKKALQKVENFRKPMLWDADAL-----------NLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred hhcCCEEEEeCCCCCCH----HHHHHHHHHHhcCCCEEEEchHH-----------HHHhhCccccCCeEECCCHHHHHHH
Confidence 45678887753212222 22344466677789999999531 111100 11246999999999999
Q ss_pred HH
Q 025807 230 IQ 231 (248)
Q Consensus 230 ~g 231 (248)
++
T Consensus 383 ~~ 384 (508)
T PRK10565 383 LG 384 (508)
T ss_pred hC
Confidence 87
No 118
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.06 E-value=2.2e+02 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=26.0
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
++.++|++...... .....-+.++.+.|+++|+++++|....
T Consensus 148 ~~TklV~~e~~~np-~g~v~Di~~I~~la~~~gi~livD~t~a 189 (433)
T PRK08134 148 PNTRLLFGETLGNP-GLEVLDIPTVAAIAHEAGVPLLVDSTFT 189 (433)
T ss_pred CCCeEEEEECCCcc-cCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 45667766543211 0001224578888899999999998754
No 119
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=45.88 E-value=2e+02 Score=25.01 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=26.4
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
++.+++++....- +......+.++.+.++++|+.+++|-..
T Consensus 135 ~~tklv~le~P~N-P~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 135 PNTKAIFIETPTN-PLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred cCceEEEEECCCC-CCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3567777654321 1123455677888888889888888754
No 120
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=45.05 E-value=1.1e+02 Score=24.78 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=43.0
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe----CHHHH
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV----KFETR 226 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~----N~~E~ 226 (248)
.....|.+.++|... ...+.+.+++++.|+..+++++-|+... .+-+++|.+++ |-..-
T Consensus 24 ~~~gtdai~vGGS~~---vt~~~~~~~v~~ik~~~lPvilfp~~~~--------------~i~~~aDa~l~~svlNs~~~ 86 (223)
T TIGR01768 24 AESGTDAILIGGSQG---VTYEKTDTLIEALRRYGLPIILFPSNPT--------------NVSRDADALFFPSVLNSDDP 86 (223)
T ss_pred HhcCCCEEEEcCCCc---ccHHHHHHHHHHHhccCCCEEEeCCCcc--------------ccCcCCCEEEEEEeecCCCc
Confidence 345689999998643 3445667788888888899999887532 23355666553 55555
Q ss_pred HHhHHH
Q 025807 227 YSCIQK 232 (248)
Q Consensus 227 ~~l~g~ 232 (248)
..+.|.
T Consensus 87 ~~iig~ 92 (223)
T TIGR01768 87 YWIIGA 92 (223)
T ss_pred hHHHhH
Confidence 555554
No 121
>smart00642 Aamy Alpha-amylase domain.
Probab=44.36 E-value=29 Score=26.62 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCC
Q 025807 171 RSTQLAAMNLAKESGSILSYDPN 193 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~~ 193 (248)
.+..+.+++.|+++|++|++|.-
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 36778999999999999999985
No 122
>PRK05939 hypothetical protein; Provisional
Probab=44.12 E-value=2e+02 Score=25.50 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=23.9
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.+++++....... .....+.++.+.|+++|+.+++|-..
T Consensus 131 ~tklV~vesp~Npt-G~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 131 NTRMVFVETIANPG-TQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCeEEEEECCCCCC-CCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 45666665322110 11233567778888889998888853
No 123
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.73 E-value=1.5e+02 Score=24.35 Aligned_cols=42 Identities=7% Similarity=-0.091 Sum_probs=32.2
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHH-HCCCeEEEeCCCC
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAK-ESGSILSYDPNLR 195 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~-~~g~~v~~D~~~~ 195 (248)
...+.|.+-++|... ...+.+.+++++++ ..++++++-|+..
T Consensus 38 ~~~GTDaImIGGS~g---vt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 38 AEAGTDAIMIGGSDG---VTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred HHcCCCEEEECCccc---ccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 456799999998643 34466678888888 8889999999753
No 124
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=43.71 E-value=1.5e+02 Score=24.26 Aligned_cols=65 Identities=14% Similarity=-0.036 Sum_probs=44.9
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe----CHHHH
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV----KFETR 226 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~----N~~E~ 226 (248)
.....|.+.++|.... ..+.+.+++++.|+..+++++-|+... .+-+++|.+++ |-...
T Consensus 29 ~~~gtdai~vGGS~~v---t~~~~~~~v~~ik~~~lPvilfp~~~~--------------~i~~~aDa~l~~svlNs~~~ 91 (232)
T PRK04169 29 CESGTDAIIVGGSDGV---TEENVDELVKAIKEYDLPVILFPGNIE--------------GISPGADAYLFPSVLNSRNP 91 (232)
T ss_pred HhcCCCEEEEcCCCcc---chHHHHHHHHHHhcCCCCEEEeCCCcc--------------ccCcCCCEEEEEEEecCCCc
Confidence 4567899999986433 346667788888888899999887532 23456776663 66666
Q ss_pred HHhHHH
Q 025807 227 YSCIQK 232 (248)
Q Consensus 227 ~~l~g~ 232 (248)
..+.|.
T Consensus 92 ~~iig~ 97 (232)
T PRK04169 92 YWIIGA 97 (232)
T ss_pred chHhhH
Confidence 666664
No 125
>PRK07050 cystathionine beta-lyase; Provisional
Probab=43.66 E-value=2e+02 Score=25.32 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=25.9
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL 196 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 196 (248)
+.++++++.... .......+.++.+.|+++|+.+++|-....
T Consensus 150 ~tklV~le~p~N-p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 150 NTRLIWLEAPGS-VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCeEEEEECCCC-CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 455666543321 112344566778888889999999886533
No 126
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=43.49 E-value=40 Score=23.95 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=49.2
Q ss_pred eeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHh-hhcCccEEEEc
Q 025807 83 KLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKN-LIKQGSIFHYG 161 (248)
Q Consensus 83 ~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~ 161 (248)
.+|..+.+-.+.+.+++.|+.+-.+...++..+. .+ + ..++.+..-.......-++.+.+-.. .-.+++.+| .
T Consensus 7 IanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~-~~---~-~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~-p 80 (110)
T PF00289_consen 7 IANRGEIAVRIIRALRELGIETVAVNSNPDTVST-HV---D-MADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH-P 80 (110)
T ss_dssp ESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH-HH---H-HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE-S
T ss_pred EECCCHHHHHHHHHHHHhCCcceeccCchhcccc-cc---c-ccccceecCcchhhhhhccHHHHhhHhhhhcCcccc-c
Confidence 3567777889999999999987655444332111 10 1 12344333211122222344433321 234677776 5
Q ss_pred ccccccchhHHHHHHHHHHHHHCCCeE
Q 025807 162 SISLIAEPCRSTQLAAMNLAKESGSIL 188 (248)
Q Consensus 162 g~~~~~~~~~~~~~~~~~~a~~~g~~v 188 (248)
|+...++. .++.+.+.+.|+++
T Consensus 81 Gyg~lse~-----~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 81 GYGFLSEN-----AEFAEACEDAGIIF 102 (110)
T ss_dssp TSSTTTTH-----HHHHHHHHHTT-EE
T ss_pred ccchhHHH-----HHHHHHHHHCCCEE
Confidence 55555554 35666667777644
No 127
>PRK15447 putative protease; Provisional
Probab=43.10 E-value=1.9e+02 Score=24.59 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=32.5
Q ss_pred cCccEEEEcccc--cccchhHHHHHHHHHHHHHCCCeEEEeCC
Q 025807 153 KQGSIFHYGSIS--LIAEPCRSTQLAAMNLAKESGSILSYDPN 193 (248)
Q Consensus 153 ~~~~~v~~~g~~--~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 193 (248)
+++|.||++.-. ...+...+.+.++++.++++|++|.+-..
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p 69 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTL 69 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 479999998532 22357778999999999999999998664
No 128
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=42.50 E-value=1.1e+02 Score=25.72 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=40.6
Q ss_pred cEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe-----CHHHHHHhH
Q 025807 156 SIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----KFETRYSCI 230 (248)
Q Consensus 156 ~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~-----N~~E~~~l~ 230 (248)
..|.++| .-+-...+.+.++++.+++.|..+.++.+.... .+.+.++++..|++.+ +++....+.
T Consensus 127 ~~V~~sG--GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~--------~~~~~~ll~~~d~~~isl~~~~~~~~~~~~ 196 (295)
T TIGR02494 127 GGVTLSG--GEPLLQPEFALALLQACHERGIHTAVETSGFTP--------WETIEKVLPYVDLFLFDIKHLDDERHKEVT 196 (295)
T ss_pred CcEEeeC--cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC--------HHHHHHHHhhCCEEEEeeccCChHHHHHHh
Confidence 3455655 222234566678999999999999999886421 2345556666777543 455555554
Q ss_pred H
Q 025807 231 Q 231 (248)
Q Consensus 231 g 231 (248)
|
T Consensus 197 g 197 (295)
T TIGR02494 197 G 197 (295)
T ss_pred C
Confidence 4
No 129
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=41.30 E-value=49 Score=28.14 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=33.9
Q ss_pred cccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHH
Q 025807 57 KKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILK 98 (248)
Q Consensus 57 ~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~ 98 (248)
+-+-=|. -+..-.|++.|++.+|+..+|.|..|+.+.+.++
T Consensus 14 ~~~~~g~-~~~~~~~~~~~~~a~f~~~~gpd~~g~~~~r~~~ 54 (296)
T PRK15394 14 RGTREGV-PRLLEILSKHGIQASFFFSVGPDNMGRHLWRLLK 54 (296)
T ss_pred cccccCH-HHHHHHHHHcCCCEEEEeccCCCchhHHHHHHhh
Confidence 3344465 7889999999999999999999999988877653
No 130
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=41.29 E-value=1.5e+02 Score=26.06 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCeEEEeCCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+.++.+.++++|+.+++|-...
T Consensus 163 l~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 163 MERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred HHHHHHHHHHcCCEEEEECCCc
Confidence 3466677778888888888643
No 131
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=41.25 E-value=1.6e+02 Score=25.75 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCeEEEeCCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+.++.+.++++|+.+++|-...
T Consensus 158 l~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 158 IAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCCc
Confidence 3566677788888888888643
No 132
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.78 E-value=2.7e+02 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCeEEEeCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.++.+.|+++|+.+++|-..
T Consensus 174 i~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 174 IPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred HHHHHHHHHHcCCeEEEECCC
Confidence 456777788999999999974
No 133
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=40.28 E-value=1.5e+02 Score=23.28 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=35.7
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeC-CCCCCCCCCHHHHHHHHHHhhh-hCCEEEeC
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDP-NLRLPLWPSEEAAREGIMSIWD-QADIIKVK 222 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~-~~~~~~w~~~~~~~~~~~~~l~-~~dil~~N 222 (248)
-.++|++.+-+. .+.....++++.++++|+++.+++ ++ +.. .+......+ .+|++.++
T Consensus 74 ~~Gad~i~vh~~-----~~~~~~~~~i~~~~~~g~~~~~~~~~~----~t~----~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 74 AAGADIVTVLGV-----ADDATIKGAVKAAKKHGKEVQVDLINV----KDK----VKRAKELKELGADYIGVH 133 (206)
T ss_pred HcCCCEEEEecc-----CCHHHHHHHHHHHHHcCCEEEEEecCC----CCh----HHHHHHHHHcCCCEEEEc
Confidence 346777754432 122445678888999999999884 53 211 223333444 78898875
No 134
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=40.18 E-value=52 Score=23.92 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=35.4
Q ss_pred ccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 58 KAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 58 ~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
....|.+.-++..|...|+++.+++.+|... .+.|++.||++
T Consensus 48 ~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~a-----~~~l~~~GIkv 89 (121)
T COG1433 48 SAEKGAGIRIAELLVDEGVDVVIASNIGPNA-----YNALKAAGIKV 89 (121)
T ss_pred cccCcchHHHHHHHHHcCCCEEEECccCHHH-----HHHHHHcCcEE
Confidence 4556777889999999999999999998773 56899999995
No 135
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=39.94 E-value=2.1e+02 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=23.9
Q ss_pred CccEEEEcccccc-cchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 154 QGSIFHYGSISLI-AEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 154 ~~~~v~~~g~~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+.+++++...... ... -.+.++.+.|+++|+.+++|-...
T Consensus 137 ~tklV~ie~p~NPtG~v--~dl~~I~~la~~~gi~livD~t~a 177 (385)
T PRK08574 137 RTKLVFIETMTNPTLKV--IDVPEVAKAAKELGAILVVDNTFA 177 (385)
T ss_pred CceEEEEECCCCCCCEe--cCHHHHHHHHHHcCCEEEEECCCC
Confidence 4567766543211 000 113467777888999999998743
No 136
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=39.85 E-value=54 Score=22.35 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.1
Q ss_pred ChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 62 GAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 62 G~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
|.+...+..|...|.++.+++.+|.. .++.|++.||..
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~-----~~~~l~~~gI~v 87 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPR-----ALNKLRNAGIKV 87 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcC-----HHHHHHHCCCEE
Confidence 44577888888899999999988865 568899999985
No 137
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=39.49 E-value=2.5e+02 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.044 Sum_probs=25.2
Q ss_pred CccEEEEcccccccc-hhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 154 QGSIFHYGSISLIAE-PCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.++++++|.++..+ .+.+.+.++++.++++++.+++|=..
T Consensus 136 ~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy 177 (346)
T TIGR03576 136 GTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDAS 177 (346)
T ss_pred CceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 355666666533222 23355667777788888888888653
No 138
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=39.40 E-value=1.7e+02 Score=25.42 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCeEEEeCCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+.++.+.++++|+.+++|-...
T Consensus 144 l~~i~~la~~~g~~livD~t~~ 165 (369)
T cd00614 144 IEAIAELAHEHGALLVVDNTFA 165 (369)
T ss_pred HHHHHHHHHHcCCEEEEECCCc
Confidence 3467777788888888888643
No 139
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=39.21 E-value=1.7e+02 Score=23.68 Aligned_cols=67 Identities=13% Similarity=-0.047 Sum_probs=41.0
Q ss_pred EEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe-----CHHHHHHhHH
Q 025807 157 IFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----KFETRYSCIQ 231 (248)
Q Consensus 157 ~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~-----N~~E~~~l~g 231 (248)
.|.++| .-+-...+.+.++++.+++.|..+.++.+..... ..+.+..+++.+|.+.+ +++....++|
T Consensus 73 ~V~~sG--GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~------~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g 144 (246)
T PRK11145 73 GVTASG--GEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR------YDPVIDELLDVTDLVMLDLKQMNDEIHQNLVG 144 (246)
T ss_pred eEEEeC--ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCc------chHHHHHHHHhCCEEEECCCcCChhhcccccC
Confidence 566665 2222345666789999999999999998764321 12445556667786554 4443444544
No 140
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=39.15 E-value=1.7e+02 Score=26.28 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=15.4
Q ss_pred HHHHHHHHHCCCeEEEeCCC
Q 025807 175 LAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 175 ~~~~~~a~~~g~~v~~D~~~ 194 (248)
.++.+.++++|+.+++|-..
T Consensus 169 ~~I~~la~~~gi~vIvD~t~ 188 (431)
T PRK08248 169 EAVAAIAHEHGIPLIVDNTF 188 (431)
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 46777788888888888764
No 141
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=38.57 E-value=2.4e+02 Score=23.65 Aligned_cols=95 Identities=15% Similarity=0.218 Sum_probs=49.0
Q ss_pred CceEEEEEEecCCCceEEEe-cCCCcccccCcccchHhhhcCccEEEEccccc------ccchhHHHH-HHHHHHHHHCC
Q 025807 114 RTALAFVTLRADGEREFLFF-RHPSADMLLCESELDKNLIKQGSIFHYGSISL------IAEPCRSTQ-LAAMNLAKESG 185 (248)
Q Consensus 114 ~T~~~~i~i~~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~------~~~~~~~~~-~~~~~~a~~~g 185 (248)
++|..+...-.+|+.+++.. +.+|+ ...+.+.+-.-+.++++.++|-.. ......+.. ..+-+.+...+
T Consensus 163 kLGyVl~v~V~dg~~~i~faSDvqGp---~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~ 239 (304)
T COG2248 163 KLGYVLMVAVTDGKSSIVFASDVQGP---INDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETN 239 (304)
T ss_pred ccceEEEEEEecCCeEEEEcccccCC---CccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCc
Confidence 44544443334677666553 22222 334444444457899999998543 232333333 33333344455
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhC
Q 025807 186 SILSYDPNLRLPLWPSEEAAREGIMSIWDQA 216 (248)
Q Consensus 186 ~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~ 216 (248)
.++++|=..... ..+++.+.++...+
T Consensus 240 ~~lViDHHllRD-----~~y~e~l~~l~~~~ 265 (304)
T COG2248 240 ATLVIDHHLLRD-----KNYREFLEELFERA 265 (304)
T ss_pred ceEEEeehhhcC-----CCHHHHHHHHHhhH
Confidence 788888753221 12455666655544
No 142
>PRK06444 prephenate dehydrogenase; Provisional
Probab=38.52 E-value=1.4e+02 Score=23.73 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEeeCC-CHHHHHHHHHHHHCCCCc
Q 025807 81 VGKLGD-DEFGYMLANILKENNVDT 104 (248)
Q Consensus 81 ~~~vG~-D~~g~~i~~~L~~~gI~~ 104 (248)
++.||. +..|+++.+.+++.|..+
T Consensus 3 ~~iiG~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 3 EIIIGKNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEEecCCcHHHHHHHHHHhCCCEE
Confidence 456665 789999999999999875
No 143
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.31 E-value=1.7e+02 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCC
Q 025807 60 PGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVD 103 (248)
Q Consensus 60 ~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~ 103 (248)
.|+.|.-.|..|+..|.+|.++..-..+.. +...+.|.+.|++
T Consensus 13 ~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 13 AGVSGLALAKFLKKLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 455667788888888999887765322322 3334556667765
No 144
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.16 E-value=1.6e+02 Score=22.12 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=55.8
Q ss_pred EeeC-CCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEEE
Q 025807 82 GKLG-DDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFHY 160 (248)
Q Consensus 82 ~~vG-~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 160 (248)
..+| +...|+.+.+.|.+.|.++..+.+.++ +... ...-.++.. + ..+++.+. +.++++|.++.
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~-~~~~-------~~~~~~~~~-----d-~~d~~~~~-~al~~~d~vi~ 66 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPS-KAED-------SPGVEIIQG-----D-LFDPDSVK-AALKGADAVIH 66 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGG-GHHH-------CTTEEEEES-----C-TTCHHHHH-HHHTTSSEEEE
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCch-hccc-------cccccccee-----e-ehhhhhhh-hhhhhcchhhh
Confidence 3466 578999999999999987765554332 2111 112222211 1 12233332 46778999887
Q ss_pred cccccccchhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 161 GSISLIAEPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 161 ~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
..-.... ....+..+++.+++.|++-++-+
T Consensus 67 ~~~~~~~--~~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 67 AAGPPPK--DVDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp CCHSTTT--HHHHHHHHHHHHHHTTSSEEEEE
T ss_pred hhhhhcc--cccccccccccccccccccceee
Confidence 6532222 36777888998999897655444
No 145
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=38.09 E-value=38 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHHHHHCCCeEEEeCC-------------CCCCCCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 167 AEPCRSTQLAAMNLAKESGSILSYDPN-------------LRLPLWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~g~~v~~D~~-------------~~~~~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
.+.+.+.++++.+.|++.++++++|.. +.+..|+ ..+..+++++++|-+.++
T Consensus 201 QpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~s----I~~IarEm~sYaD~~~mS 265 (471)
T COG3033 201 QPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWS----IEEIAREMYSYADGCTMS 265 (471)
T ss_pred CcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCccccccc----HHHHHHHHHhhhhhheee
Confidence 456678888999999999999999983 2222232 245556677777766664
No 146
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=37.61 E-value=1.1e+02 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEeCCCCC
Q 025807 175 LAAMNLAKESGSILSYDPNLRL 196 (248)
Q Consensus 175 ~~~~~~a~~~g~~v~~D~~~~~ 196 (248)
..+.+.|+++|+.|++|-....
T Consensus 182 ~~l~~la~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 182 EKLARLAHKYGFLVVVDNTFGS 203 (409)
T ss_pred HHHHHHHhhCCCEEEEeCCcCc
Confidence 4677778899999999987543
No 147
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=37.50 E-value=40 Score=27.91 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCC
Q 025807 171 RSTQLAAMNLAKESGSILSYDPN 193 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~~ 193 (248)
.+..++++++|+++|++|++|.-
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhhhhhccccccceEEEeee
Confidence 46788999999999999999984
No 148
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=37.00 E-value=1.9e+02 Score=26.58 Aligned_cols=161 Identities=18% Similarity=0.099 Sum_probs=73.8
Q ss_pred ccCCChHHHHHHHHHHcCC--ceeEEEeeCCCH---HHHHHHHHHHHC--CCCccceEEcCCCCceEEEEEEecCCCce-
Q 025807 58 KAPGGAPANVAVGISRLGG--SSAFVGKLGDDE---FGYMLANILKEN--NVDTSGVRYDSTARTALAFVTLRADGERE- 129 (248)
Q Consensus 58 ~~~GG~a~N~a~ala~lG~--~v~l~~~vG~D~---~g~~i~~~L~~~--gI~~~~v~~~~~~~T~~~~i~i~~~g~r~- 129 (248)
+-..|+.+|.+...+.+.- +--.+++.|+.. .-+.=.+.+++. |=.+-.+...++.+....+ ..+-.+..-
T Consensus 116 qp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~-~~n~~~~~~~ 194 (493)
T PRK13580 116 QPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGF-RPNISGKMFH 194 (493)
T ss_pred cCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCc-ccchhhheee
Confidence 3457888999999999853 222455556311 122223444443 2222223222333322221 011111111
Q ss_pred EEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHH
Q 025807 130 FLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGI 209 (248)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~ 209 (248)
...+.-......++.+.+....-+....+.+++.+..+.. .-+.++.+.|++.|+.+.+|-......... ....+..
T Consensus 195 ~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~--~dl~~i~eia~~~gA~L~VD~AH~~Gligg-~~~~~~~ 271 (493)
T PRK13580 195 QRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRR--VNFAKLREIADEVGAVLMVDMAHFAGLVAG-KVFTGDE 271 (493)
T ss_pred eEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCC--cCHHHHHHHHHHcCCEEEEECchhhceecc-ccchhhc
Confidence 1111000011224444444444455566666665543221 124567777889999999999754443321 1111111
Q ss_pred HHhhhhCCEEEeCH
Q 025807 210 MSIWDQADIIKVKF 223 (248)
Q Consensus 210 ~~~l~~~dil~~N~ 223 (248)
..+..+|++..+-
T Consensus 272 -~~~~~~D~vtgT~ 284 (493)
T PRK13580 272 -DPVPHADIVTTTT 284 (493)
T ss_pred -CCCCCCcEEEeCC
Confidence 1234678777653
No 149
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=36.90 E-value=1.3e+02 Score=26.87 Aligned_cols=70 Identities=7% Similarity=0.086 Sum_probs=41.6
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHhH
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSCI 230 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~ 230 (248)
.+++|++.++..+.... .......+++++++.|.+|++-= +... ..++.+...++.+|+++.+ .+...+.
T Consensus 34 ~~~aD~viinTC~v~~~-a~~~~~~~i~~~~~~~~~vvvgG-c~a~------~~pee~~~~~~~vd~v~g~-~~~~~l~ 103 (430)
T TIGR01125 34 YEDADYVIVNTCGFIED-ARQESIDTIGELADAGKKVIVTG-CLVQ------RYKEELKEEIPEVHAITGS-GDVENIL 103 (430)
T ss_pred cccCCEEEEeCCCccch-HHHHHHHHHHHHHhcCCCEEEEC-Cccc------cchHHHHhhCCCCcEEECC-CCHHHHH
Confidence 34689999987655443 33445566788887787766533 2222 1244454556789988766 3344443
No 150
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=36.88 E-value=1.1e+02 Score=25.56 Aligned_cols=133 Identities=7% Similarity=0.017 Sum_probs=71.3
Q ss_pred CCceeEEEeeCCC-HHH-HHHHHHHHHCCCCccceEEcCCCCceEEE---EEEecCCCceEEEecCCCcccccCcccchH
Q 025807 75 GGSSAFVGKLGDD-EFG-YMLANILKENNVDTSGVRYDSTARTALAF---VTLRADGEREFLFFRHPSADMLLCESELDK 149 (248)
Q Consensus 75 G~~v~l~~~vG~D-~~g-~~i~~~L~~~gI~~~~v~~~~~~~T~~~~---i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~ 149 (248)
..+..++++...= .+| +.+.+.+.+.|++- +.+ +..+....- -.....|-..+... .+. .+.+.+.
T Consensus 91 ~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdg--vii-pDLP~ee~~~~~~~~~~~gi~~I~lv---~Pt--T~~eri~- 161 (263)
T CHL00200 91 KAPIVIFTYYNPVLHYGINKFIKKISQAGVKG--LII-PDLPYEESDYLISVCNLYNIELILLI---APT--SSKSRIQ- 161 (263)
T ss_pred CCCEEEEecccHHHHhCHHHHHHHHHHcCCeE--EEe-cCCCHHHHHHHHHHHHHcCCCEEEEE---CCC--CCHHHHH-
Confidence 4566777777431 123 56788889999984 434 333331110 11122343333332 111 1223332
Q ss_pred hhhcCcc-EEEE---cccccccchhHHHHHHHHHHHHHC-CCeEEEeCCCCCCCCCCHHHHHHHHHHhhhh-CCEEEeCH
Q 025807 150 NLIKQGS-IFHY---GSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRLPLWPSEEAAREGIMSIWDQ-ADIIKVKF 223 (248)
Q Consensus 150 ~~~~~~~-~v~~---~g~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~-~dil~~N~ 223 (248)
.+.+.++ ++|+ .|.+.......+.+.+++++.|+. +.++.++.+-+ + ++....+.+. +|-+++--
T Consensus 162 ~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~-----~----~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 162 KIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGIS-----T----SEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcC-----C----HHHHHHHHhcCCCEEEECH
Confidence 3455666 7776 233233223345567778777764 57888888753 1 4566778887 99777644
Q ss_pred HH
Q 025807 224 ET 225 (248)
Q Consensus 224 ~E 225 (248)
.-
T Consensus 233 al 234 (263)
T CHL00200 233 AC 234 (263)
T ss_pred HH
Confidence 33
No 151
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=36.58 E-value=2.2e+02 Score=22.75 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=49.5
Q ss_pred hhhcCccEEEEcccccccchh--HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh--hCCEEEeCHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPC--RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD--QADIIKVKFET 225 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~--~~dil~~N~~E 225 (248)
+.++.+|++.++.+....... .+.+..++...+++|.++++-....+..|.... .+...++-. .+.+-.++.++
T Consensus 93 ~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~--~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 93 DRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLL--PDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp HHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS---HHHHHHHHCSEEEEE----HHH
T ss_pred hhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccC--hhhhhhHhhcchhhcCCCCHHH
Confidence 457899999999987654433 678889999999999988877755544343211 122223323 35555677777
Q ss_pred HHHhHHH
Q 025807 226 RYSCIQK 232 (248)
Q Consensus 226 ~~~l~g~ 232 (248)
...+...
T Consensus 171 r~~il~~ 177 (219)
T PF00308_consen 171 RRRILQK 177 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 152
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=35.98 E-value=1.2e+02 Score=24.48 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHCC--CeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe-----CHHHHHHhHHHHHHHHHhhc
Q 025807 169 PCRSTQLAAMNLAKESG--SILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV-----KFETRYSCIQKMLLHWYRYS 241 (248)
Q Consensus 169 ~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~-----N~~E~~~l~g~~~~~~~~~~ 241 (248)
.++...++++..|+++. +++.-|.+. ++....+.+.+|+++. |+.+.-. .-.++++..
T Consensus 108 fs~R~~reLl~~a~~R~Ni~PIL~DA~~-----------P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~----~Na~~FLk~ 172 (231)
T COG1889 108 FSPRPMRELLDVAEKRPNIIPILEDARK-----------PEKYRHLVEKVDVIYQDVAQPNQAEILA----DNAEFFLKK 172 (231)
T ss_pred ecchhHHHHHHHHHhCCCceeeecccCC-----------cHHhhhhcccccEEEEecCCchHHHHHH----HHHHHhccc
Confidence 34455667777776655 577788764 2344556777888874 4444332 345566666
Q ss_pred Ccce
Q 025807 242 SGFF 245 (248)
Q Consensus 242 ~~~~ 245 (248)
.|..
T Consensus 173 ~G~~ 176 (231)
T COG1889 173 GGYV 176 (231)
T ss_pred CCeE
Confidence 6643
No 153
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=35.43 E-value=93 Score=23.30 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=30.8
Q ss_pred hHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 148 DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 148 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
..+.+..+|++.++|.++.+. ++..+++.+++....+.+-|+.
T Consensus 56 ~~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 56 AEEILPWADVVIITGSTLVNG----TIDDILELARNAREVILYGPSA 98 (147)
T ss_dssp HHHHGGG-SEEEEECHHCCTT----THHHHHHHTTTSSEEEEESCCG
T ss_pred HHHHHccCCEEEEEeeeeecC----CHHHHHHhCccCCeEEEEecCc
Confidence 456789999999999887663 3457888888555566677754
No 154
>PRK03673 hypothetical protein; Provisional
Probab=34.88 E-value=1.4e+02 Score=26.65 Aligned_cols=48 Identities=19% Similarity=0.098 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCC
Q 025807 63 APANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDST 112 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~ 112 (248)
++...+..|..+|.++...+.+++|+ +.|.+.+++..-..+.+....+
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~D~~--~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVGDNL--DALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCH--HHHHHHHHHHhccCCEEEEcCC
Confidence 56777888888999999999999995 5577887776444555555433
No 155
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=34.73 E-value=59 Score=27.49 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=50.7
Q ss_pred cccCcccchHhhh------cCccEEEEcccccc---cchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHH
Q 025807 140 MLLCESELDKNLI------KQGSIFHYGSISLI---AEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM 210 (248)
Q Consensus 140 ~~~~~~~~~~~~~------~~~~~v~~~g~~~~---~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~ 210 (248)
..++++++....- .+..+|+++..+-. ...+.+.+.++.+.|+++|+++.+|-.- +|.........+.
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR---l~~a~~~~~~~~~ 180 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR---LANAAAALGVSLA 180 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT---HHHHHCHHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh---HHHhhhcccccHH
Confidence 3466666653221 34678888754432 2356788999999999999999999853 1332333466788
Q ss_pred HhhhhCCEEEe
Q 025807 211 SIWDQADIIKV 221 (248)
Q Consensus 211 ~~l~~~dil~~ 221 (248)
++..++|.+.+
T Consensus 181 e~~~~~D~v~~ 191 (290)
T PF01212_consen 181 EIAAGADSVSF 191 (290)
T ss_dssp HHHTTSSEEEE
T ss_pred HHhhhCCEEEE
Confidence 88899998873
No 156
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=34.50 E-value=99 Score=19.38 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=27.0
Q ss_pred eeEEEeeCCCH----HHHHHHHHHHHCCCCccceEEcCCCCceEEEEE
Q 025807 78 SAFVGKLGDDE----FGYMLANILKENNVDTSGVRYDSTARTALAFVT 121 (248)
Q Consensus 78 v~l~~~vG~D~----~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~ 121 (248)
+..++.||++- ....+.+.|.+.||+...+... ......++++
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~-~s~~~is~~V 48 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS-MRNVDVQFVV 48 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec-CCeeEEEEEE
Confidence 45677888642 3457888899999997655432 2234454443
No 157
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=34.14 E-value=3.3e+02 Score=24.12 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=24.2
Q ss_pred CccEEEEccccc-ccchhHHHHHHHHHHHHHCCCeEEEeCCCCC
Q 025807 154 QGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNLRL 196 (248)
Q Consensus 154 ~~~~v~~~g~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 196 (248)
+.++|++....- .... ..+.++.+.|+++|+.+++|-....
T Consensus 155 ~tklV~~esp~Nptg~v--~dl~~I~~la~~~g~~vivD~a~a~ 196 (403)
T PRK07810 155 PTQAVFFETPSNPMQSL--VDIAAVSELAHAAGAKVVLDNVFAT 196 (403)
T ss_pred CceEEEEECCCCCCCee--cCHHHHHHHHHHcCCEEEEECCCCc
Confidence 456676643321 1111 1245677778888999999987543
No 158
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=34.02 E-value=2e+02 Score=25.44 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=23.7
Q ss_pred CccEEEEccccc-ccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 154 QGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 154 ~~~~v~~~g~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+.+++++..... .... -.+.++.+.|+++|+.+++|-...
T Consensus 149 ~tklV~ie~p~NPtg~v--~dl~~I~~la~~~gi~livD~t~a 189 (398)
T PRK08249 149 GCDLLYLETPTNPTLKI--VDIERLAAAAKKVGALVVVDNTFA 189 (398)
T ss_pred CCeEEEEECCCCCCCcc--CCHHHHHHHHHHcCCEEEEECCcC
Confidence 466777643321 1111 113457777888899999998654
No 159
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.80 E-value=2.4e+02 Score=23.32 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=45.9
Q ss_pred cchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHH
Q 025807 146 ELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFET 225 (248)
Q Consensus 146 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E 225 (248)
++......++|++++....+ +.+.+.++++.+++.|..+.+|+.. .++... ..-..+|++-.|...
T Consensus 125 qi~~a~~~GAD~VlLi~~~l----~~~~l~~li~~a~~lGl~~lvevh~-------~~E~~~---A~~~gadiIgin~rd 190 (260)
T PRK00278 125 QIYEARAAGADAILLIVAAL----DDEQLKELLDYAHSLGLDVLVEVHD-------EEELER---ALKLGAPLIGINNRN 190 (260)
T ss_pred HHHHHHHcCCCEEEEEeccC----CHHHHHHHHHHHHHcCCeEEEEeCC-------HHHHHH---HHHcCCCEEEECCCC
Confidence 44445567899999876432 3478889999999999999999974 222212 122378888887643
Q ss_pred H
Q 025807 226 R 226 (248)
Q Consensus 226 ~ 226 (248)
+
T Consensus 191 l 191 (260)
T PRK00278 191 L 191 (260)
T ss_pred c
Confidence 3
No 160
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=33.56 E-value=2.9e+02 Score=24.80 Aligned_cols=79 Identities=9% Similarity=-0.047 Sum_probs=49.2
Q ss_pred hhhcCccEEEEcccccccc-hhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAE-PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~ 228 (248)
..++++|++..+|-.+..+ .+...... +..|+-.|+++++=.+..-|+ .....+.....++.++|++++=+..-..
T Consensus 113 ~~l~~aDlvI~gGG~lfqD~y~~~~~~y-~l~A~l~gkpv~l~gqsiGPf--~~~~~r~l~r~vl~~~~~ItvRD~~S~~ 189 (426)
T PRK10017 113 RLLSGYDAIIQVGGSFFVDLYGVPQFEH-ALCAFMAKKPLYMIGHSVGPF--QDEQFNQLANYVFGHCDALILRESVSLD 189 (426)
T ss_pred HHHHhCCEEEECCCCccccCcccHHHHH-HHHHHHcCCCEEEECCcCCCc--CCHHHHHHHHHHHhcCCEEEEccHHHHH
Confidence 3588999999877444332 12222222 235667788777655443332 1244577888899999999997666665
Q ss_pred hHH
Q 025807 229 CIQ 231 (248)
Q Consensus 229 l~g 231 (248)
++.
T Consensus 190 ~Lk 192 (426)
T PRK10017 190 LMK 192 (426)
T ss_pred HHH
Confidence 554
No 161
>PLN00203 glutamyl-tRNA reductase
Probab=33.54 E-value=2.1e+02 Score=26.45 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHHH--cC---CceeEEEeeCCCHHHHHHHHHHHHCCCC
Q 025807 65 ANVAVGISR--LG---GSSAFVGKLGDDEFGYMLANILKENNVD 103 (248)
Q Consensus 65 ~N~a~ala~--lG---~~v~l~~~vG~D~~g~~i~~~L~~~gI~ 103 (248)
..+|+-+++ +| ..-.=+..||....|..+.+.|...|+.
T Consensus 248 ~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~ 291 (519)
T PLN00203 248 SSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCT 291 (519)
T ss_pred HHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCC
Confidence 345555554 34 3345577789999999999999888753
No 162
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=33.52 E-value=1.7e+02 Score=21.69 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEc
Q 025807 62 GAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD 110 (248)
Q Consensus 62 G~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~ 110 (248)
-++...+..|.++|.++...+.+++|. +.|.+.+++.--..+.+...
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLGIVPDDP--EEIREILRKAVDEADVVLTT 73 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEeecCCCH--HHHHHHHHHHHhCCCEEEEC
Confidence 345677888999999999999999995 44666665542233434443
No 163
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=33.12 E-value=55 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.050 Sum_probs=26.7
Q ss_pred cCCChHHHHHHHHHHcCCceeEEEeeCC---CHHHHHHHHHHHHCCCC
Q 025807 59 APGGAPANVAVGISRLGGSSAFVGKLGD---DEFGYMLANILKENNVD 103 (248)
Q Consensus 59 ~~GG~a~N~a~ala~lG~~v~l~~~vG~---D~~g~~i~~~L~~~gI~ 103 (248)
.-||.|+-+|..|+..|.+|.++..-.. .+..+.-++.+++.|+.
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 3467777778888777887776433322 23444555566666654
No 164
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=33.05 E-value=3.3e+02 Score=23.75 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred EEeeC-CCHHHHHHHHHHHH-CCCCccceEEc-CCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccE
Q 025807 81 VGKLG-DDEFGYMLANILKE-NNVDTSGVRYD-STARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSI 157 (248)
Q Consensus 81 ~~~vG-~D~~g~~i~~~L~~-~gI~~~~v~~~-~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (248)
++.|| ...-|+.+++.|.+ -.++...+... .....|..+.+ .++ . +..+.++...+++.|+
T Consensus 8 VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~---~~~-~------------l~v~~~~~~~~~~~Di 71 (347)
T PRK06728 8 VAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF---KGR-E------------IIIQEAKINSFEGVDI 71 (347)
T ss_pred EEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee---CCc-c------------eEEEeCCHHHhcCCCE
Confidence 45566 35679999999994 67774433221 12122322211 111 1 1111222233467899
Q ss_pred EEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 158 FHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 158 v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
++++. +.+...++..++.++|+ +++|.+..
T Consensus 72 vf~a~-------~~~~s~~~~~~~~~~G~-~VID~Ss~ 101 (347)
T PRK06728 72 AFFSA-------GGEVSRQFVNQAVSSGA-IVIDNTSE 101 (347)
T ss_pred EEECC-------ChHHHHHHHHHHHHCCC-EEEECchh
Confidence 87763 33566678887777775 66777643
No 165
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.02 E-value=1e+02 Score=20.33 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHCCCCccceEEcCCCCceEEEEE
Q 025807 89 FGYMLANILKENNVDTSGVRYDSTARTALAFVT 121 (248)
Q Consensus 89 ~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~ 121 (248)
|++++++-|+++||...++ |.+--+.++++
T Consensus 17 F~rk~L~I~E~~~is~Eh~---PSGID~~Siii 46 (76)
T cd04911 17 FGRKLLSILEDNGISYEHM---PSGIDDISIII 46 (76)
T ss_pred HHHHHHHHHHHcCCCEeee---cCCCccEEEEE
Confidence 8899999999999998766 33344455443
No 166
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=32.99 E-value=1.7e+02 Score=20.41 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=40.0
Q ss_pred EEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCC-----CCCHHHHHHHHHHhhhhCCEEEeCHHH
Q 025807 158 FHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPL-----WPSEEAAREGIMSIWDQADIIKVKFET 225 (248)
Q Consensus 158 v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-----w~~~~~~~~~~~~~l~~~dil~~N~~E 225 (248)
||++|.. .++.......++.+.++++|. .++.|...... ........+.-...+..+|+++++-..
T Consensus 1 IYlAgp~-F~~~~~~~~~~~~~~L~~~g~-~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~ 71 (113)
T PF05014_consen 1 IYLAGPF-FSEEQKARVERLREALEKNGF-EVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDG 71 (113)
T ss_dssp EEEESGG-SSHHHHHHHHHHHHHHHTTTT-EEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECS
T ss_pred CEEeCCc-CCHHHHHHHHHHHHHHHhCCC-EEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC
Confidence 5777754 555566777788888888888 44555421110 112233344445688899999986543
No 167
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=32.78 E-value=48 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCH
Q 025807 169 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSE 202 (248)
Q Consensus 169 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~ 202 (248)
...+...++++++++.|.+|.+|+..+.- |.++
T Consensus 55 ~~~~~~~~~akrak~~Gm~vlldfHYSD~-WaDP 87 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGMKVLLDFHYSDF-WADP 87 (332)
T ss_dssp TSHHHHHHHHHHHHHTT-EEEEEE-SSSS---BT
T ss_pred CCHHHHHHHHHHHHHCCCeEEEeecccCC-CCCC
Confidence 35577889999999999999999975543 5543
No 168
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=32.67 E-value=67 Score=27.40 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHH
Q 025807 170 CRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEE 203 (248)
Q Consensus 170 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~ 203 (248)
......++.++|++.|.+|.+|...+. +|.++.
T Consensus 102 D~~k~ieiakRAk~~GmKVl~dFHYSD-fwaDPa 134 (403)
T COG3867 102 DLKKAIEIAKRAKNLGMKVLLDFHYSD-FWADPA 134 (403)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeccchh-hccChh
Confidence 335556899999999999999997654 376653
No 169
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=32.59 E-value=53 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.5
Q ss_pred ccccCCChHHHHHHHHHHcCCceeEEEeeC
Q 025807 56 FKKAPGGAPANVAVGISRLGGSSAFVGKLG 85 (248)
Q Consensus 56 ~~~~~GG~a~N~a~ala~lG~~v~l~~~vG 85 (248)
..--.||+.+|+|..+...+-++.+++-+.
T Consensus 65 ltDl~GGSP~N~A~~l~~~~~~~~viaGvN 94 (143)
T COG2893 65 LTDLFGGSPFNVASRLAMEGPRVEVIAGVN 94 (143)
T ss_pred EEecCCCCHhHHHHHHHhhCCCceEEecCC
Confidence 345789999999999999988887777553
No 170
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=32.40 E-value=2.6e+02 Score=22.21 Aligned_cols=53 Identities=26% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHH
Q 025807 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~ 228 (248)
.......++..++++++=....-+.. ....++.+..++++++++.+=+..-..
T Consensus 88 ~~~~~~~~~~~~~pv~~~g~g~gp~~--~~~~~~~~~~~l~~~~~i~vRD~~S~~ 140 (286)
T PF04230_consen 88 FLRWLFLAKKLGKPVIILGQGIGPFR--SEEFKKLLRRILSKADYISVRDEYSYE 140 (286)
T ss_pred HHHHHHHHHhcCCCeEEECceECccC--CHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 35667777888888776554432222 244577889999999999886555444
No 171
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.29 E-value=1.5e+02 Score=24.71 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcC
Q 025807 62 GAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDS 111 (248)
Q Consensus 62 G~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~ 111 (248)
-.+.-.|--|..+|.++..+..||+|+ +.|.+.++..-=..+.+....
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~--~~I~~~l~~a~~r~D~vI~tG 68 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNP--DRIVEALREASERADVVITTG 68 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHHHHHhCCCEEEECC
Confidence 346667778888899999999999995 345555544322244454443
No 172
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.23 E-value=2.3e+02 Score=22.58 Aligned_cols=71 Identities=8% Similarity=-0.069 Sum_probs=44.3
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEE-eCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSY-DPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYS 228 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~-D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~ 228 (248)
..-+++|.+.+... ..+.....+++++++|++|++ |.. ....-+...++-.|..++..
T Consensus 51 ~i~~~~d~Iiv~~~------~~~~~~~~l~~~~~~gIpvv~~d~~---------------~~~~~~~~~~v~~d~~~~G~ 109 (257)
T PF13407_consen 51 AISQGVDGIIVSPV------DPDSLAPFLEKAKAAGIPVVTVDSD---------------EAPDSPRAAYVGTDNYEAGK 109 (257)
T ss_dssp HHHTTESEEEEESS------STTTTHHHHHHHHHTTSEEEEESST---------------HHTTSTSSEEEEE-HHHHHH
T ss_pred HHHhcCCEEEecCC------CHHHHHHHHHHHhhcCceEEEEecc---------------ccccccceeeeeccHHHHHH
Confidence 34567888876543 223345788999999998775 443 00111345577778888877
Q ss_pred hHHHHHHHHHhhc
Q 025807 229 CIQKMLLHWYRYS 241 (248)
Q Consensus 229 l~g~~~~~~~~~~ 241 (248)
..++.+.+.+...
T Consensus 110 ~~a~~l~~~~~~~ 122 (257)
T PF13407_consen 110 LAAEYLAEKLGAK 122 (257)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccC
Confidence 7777776666654
No 173
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=32.20 E-value=2.8e+02 Score=24.24 Aligned_cols=40 Identities=8% Similarity=0.083 Sum_probs=26.0
Q ss_pred cCccEEEEccccc-ccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 153 KQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 153 ~~~~~v~~~g~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
++.++++++..+. .... ..+.++.+.|+++|+.+++|-..
T Consensus 130 ~~tklv~le~psnptg~v--~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 130 PKTKLVLLESPTNPLQKI--VDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred cCceEEEEECCCCCCCee--ecHHHHHHHHHHcCCEEEEECCC
Confidence 4567777665432 1111 12567788889999999999864
No 174
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=32.06 E-value=1.2e+02 Score=22.78 Aligned_cols=62 Identities=8% Similarity=-0.097 Sum_probs=32.8
Q ss_pred cEEEEcccccccchhHHHHHHHHHHHHHC-CCeEEEeCCCCCCCCCCHHHHH-HHHHHhhhhCCEEEe
Q 025807 156 SIFHYGSISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRLPLWPSEEAAR-EGIMSIWDQADIIKV 221 (248)
Q Consensus 156 ~~v~~~g~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~~w~~~~~~~-~~~~~~l~~~dil~~ 221 (248)
..|.++|=-.......+.+.++++.+++. +..++.+.+... ..+... ....++++++|+++-
T Consensus 65 ~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~----~~~~~~~~~~~~~l~~~D~liD 128 (154)
T TIGR02491 65 DGLTLSGGDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYT----WEEILEDEKHLEVLKYIDVLVD 128 (154)
T ss_pred CeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCcc----HHHHhcchhHHHHHhhCCEEEe
Confidence 44555552222222347888999999976 555454444311 011110 112368899998754
No 175
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=32.05 E-value=1.5e+02 Score=22.14 Aligned_cols=44 Identities=9% Similarity=-0.043 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCceeEEEeeCCCH--HHHHHHHHHHHCCCCccce
Q 025807 64 PANVAVGISRLGGSSAFVGKLGDDE--FGYMLANILKENNVDTSGV 107 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~vG~D~--~g~~i~~~L~~~gI~~~~v 107 (248)
+.++...+..|+.++.+.-.-|+|- ..+.+.+...+.||++.|-
T Consensus 52 ~~~tl~~~~~l~a~~~v~~~~G~d~~~ip~~v~~~~d~~~ikv~~~ 97 (141)
T PRK03975 52 ARETLAFAETLNAPVRVTIPAGTDLFDIPKRIYKEADEAGIKVPYD 97 (141)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCcHHHhHHHHHHHhhHcCCeeccC
Confidence 4667777777899999999999995 6799999999999997754
No 176
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=31.93 E-value=2.8e+02 Score=22.47 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=42.1
Q ss_pred hhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 151 LIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 151 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.-..+||+.+.|. .+.++....++.|++.|+.+.+|+-.. |+ .+...+.+.. -.+|+++.
T Consensus 77 ~~aGAd~~tV~g~-----A~~~TI~~~i~~A~~~~~~v~iDl~~~---~~-~~~~~~~l~~--~gvd~~~~ 136 (217)
T COG0269 77 FEAGADWVTVLGA-----ADDATIKKAIKVAKEYGKEVQIDLIGV---WD-PEQRAKWLKE--LGVDQVIL 136 (217)
T ss_pred HHcCCCEEEEEec-----CCHHHHHHHHHHHHHcCCeEEEEeecC---CC-HHHHHHHHHH--hCCCEEEE
Confidence 4568999988775 355788899999999999999999653 32 3333444443 45666664
No 177
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=31.78 E-value=1.9e+02 Score=22.20 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHH
Q 025807 63 APANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKE 99 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~ 99 (248)
++...+..|+.+|.++..+..+++|+. .|.+.+++
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~--~I~~~l~~ 54 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDED--RIAEALRR 54 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHH--HHHHHHHH
Confidence 456778888899999999999999953 35566554
No 178
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.63 E-value=2.9e+02 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=25.2
Q ss_pred cCccEEEEccccc-ccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 153 KQGSIFHYGSISL-IAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 153 ~~~~~v~~~g~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
++.+++++....- .... -.+.++.+.++++|+.+++|-...
T Consensus 147 ~~tklV~vesp~NptG~v--~dl~~I~~la~~~gi~livD~a~a 188 (427)
T PRK05994 147 PRTKAIFIESIANPGGTV--TDIAAIAEVAHRAGLPLIVDNTLA 188 (427)
T ss_pred cCCeEEEEECCCCCCCee--cCHHHHHHHHHHcCCEEEEECCcc
Confidence 3567787754321 1111 114577777889999999998643
No 179
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=31.55 E-value=1.4e+02 Score=26.68 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=37.5
Q ss_pred ccccCcccchHhhhcCccEEEEccccc--ccchhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 139 DMLLCESELDKNLIKQGSIFHYGSISL--IAEPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
+-.+++++++...-+..+++.++.-.- -.-.+++.+.++++.|+++++.|+.|=
T Consensus 157 ~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDe 212 (420)
T KOG0257|consen 157 DWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDE 212 (420)
T ss_pred cccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhh
Confidence 334555555555667899998875432 112456888899999999998888775
No 180
>PRK13753 dihydropteroate synthase; Provisional
Probab=31.16 E-value=2.7e+02 Score=23.51 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=27.4
Q ss_pred hcCccEEEEcccccccch-------hHHHHHHHHHHHHHCCCeEEEeCC
Q 025807 152 IKQGSIFHYGSISLIAEP-------CRSTQLAAMNLAKESGSILSYDPN 193 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~-------~~~~~~~~~~~a~~~g~~v~~D~~ 193 (248)
-+++|++-+++-+..+.. ..+-+..+++..++.++++++|..
T Consensus 36 ~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~ 84 (279)
T PRK13753 36 RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSF 84 (279)
T ss_pred HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 357999999886542211 122334777777777888888884
No 181
>PRK07324 transaminase; Validated
Probab=30.94 E-value=3.5e+02 Score=23.40 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=20.7
Q ss_pred CccEEEEccccc-c-cchhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 154 QGSIFHYGSISL-I-AEPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 154 ~~~~v~~~g~~~-~-~~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
+.++++++.... . .-.+.+.+.++++.|+++++.++.|-
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 455665543211 0 11244555666666777777776664
No 182
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=30.89 E-value=2.4e+02 Score=24.04 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=51.0
Q ss_pred EEEEcceeeeeccCCCCcccc-------------------cCCCccccCCC--hHHHHHHHHHHcCCceeEEEe-eCCCH
Q 025807 31 VVCFGEMLIDFVPTVGGVSLA-------------------EAPAFKKAPGG--APANVAVGISRLGGSSAFVGK-LGDDE 88 (248)
Q Consensus 31 ilviG~~~vD~~~~~~~~p~~-------------------~~~~~~~~~GG--~a~N~a~ala~lG~~v~l~~~-vG~D~ 88 (248)
=.++|++.++.+. +|..|-+ ++.+ ....|| .-...+.++..+|.+++++.. .|-..
T Consensus 27 ~~~lg~~~WeR~v-~Dp~PGP~~~~~~~~~~~i~~~~~~v~~~s-~~~r~g~~~~pqla~~~~~l~~~v~~~d~~~Gv~~ 104 (297)
T PF06626_consen 27 EVVLGSVVWERYV-VDPVPGPRPLEEFRGAEWINPHLALVTPDS-YAIRGGRFVEPQLARVLRALGEPVYAFDPTGGVQG 104 (297)
T ss_pred ceEEEEeeeEeee-cCCCCCCcCHHHhccceeecCceEEeCCcc-cccCCCceehhHHHHHHHhcCCcEEEECCCCCcHH
Confidence 4678899998765 2333221 1112 122244 556788899999999999985 77788
Q ss_pred HHHHHHHHHHHCCCCcc
Q 025807 89 FGYMLANILKENNVDTS 105 (248)
Q Consensus 89 ~g~~i~~~L~~~gI~~~ 105 (248)
..+.+....+++++|.-
T Consensus 105 l~~al~~l~~~~~iD~I 121 (297)
T PF06626_consen 105 LARALRELAEKLGIDAI 121 (297)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 88999999999999964
No 183
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=30.73 E-value=3e+02 Score=22.56 Aligned_cols=75 Identities=11% Similarity=-0.040 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHH-hhhhCCEEEe-CHHHHHHhHHH--------HHHHHH
Q 025807 169 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMS-IWDQADIIKV-KFETRYSCIQK--------MLLHWY 238 (248)
Q Consensus 169 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~-~l~~~dil~~-N~~E~~~l~g~--------~~~~~~ 238 (248)
....++.++.+-.+..|..++++.+.....|.. ..+...... ++|..--++. |.++.+.|... .+.++.
T Consensus 134 d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~-~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~ 212 (238)
T COG2226 134 DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR-KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMI 212 (238)
T ss_pred CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH-HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345778889888899898899999765543332 233334444 7887777777 66666666542 555555
Q ss_pred hhcCcce
Q 025807 239 RYSSGFF 245 (248)
Q Consensus 239 ~~~~~~~ 245 (248)
.. .||.
T Consensus 213 ~~-~gf~ 218 (238)
T COG2226 213 EK-AGFE 218 (238)
T ss_pred Hh-cCce
Confidence 54 6664
No 184
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=30.61 E-value=3.1e+02 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCeEEEeCCC
Q 025807 174 QLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.++.+.++++|+.+++|-..
T Consensus 161 l~~I~~la~~~~i~livD~t~ 181 (418)
T TIGR01326 161 IEAIAEVAHAHGVPLIVDNTF 181 (418)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 346666777888888888754
No 185
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=30.14 E-value=2e+02 Score=23.32 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=43.6
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe----CHHHHHH
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV----KFETRYS 228 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~----N~~E~~~ 228 (248)
...|.+.++|..... ...+.+..++++.++ .+++++-|+... .+-+++|.+++ |-.....
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~-~~Pvilfp~~~~--------------~i~~~aDa~l~~svlns~n~~~ 87 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRR-PVPVILFPSNPE--------------AVSPGADAYLFPSVLNSGDPYW 87 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcC-CCCEEEeCCCcc--------------ccCcCCCEEEEEeeecCCCchH
Confidence 668999999975444 345556666776665 689999997532 23466777664 6666666
Q ss_pred hHHHH
Q 025807 229 CIQKM 233 (248)
Q Consensus 229 l~g~~ 233 (248)
+.|..
T Consensus 88 i~g~~ 92 (219)
T cd02812 88 IIGAQ 92 (219)
T ss_pred HHHHH
Confidence 66654
No 186
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=29.94 E-value=1.2e+02 Score=24.14 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
..+++++.|++|+++.+-+.+--+ -+.+++.+..+|.+.+
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT~--------Ve~~~~~~~~~D~vLv 140 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGTP--------VEDLEPLAEHVDMVLV 140 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCCc--------HHHHHHhhccccEEEE
Confidence 568999999999997766654322 4567777788887764
No 187
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=29.48 E-value=4e+02 Score=23.51 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=50.0
Q ss_pred EEeeC-CCHHHHHHHHHHH-HCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchH-hhhcCccE
Q 025807 81 VGKLG-DDEFGYMLANILK-ENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDK-NLIKQGSI 157 (248)
Q Consensus 81 ~~~vG-~D~~g~~i~~~L~-~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 157 (248)
++.|| ...-|+.+++.|. +..+....+......+.+-..+.. .++. .....+.. +.+++.|+
T Consensus 3 VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f--~~~~-------------~~v~~~~~~~~~~~vDi 67 (366)
T TIGR01745 3 VGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSF--GGTT-------------GTLQDAFDIDALKALDI 67 (366)
T ss_pred EEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCC--CCCc-------------ceEEcCcccccccCCCE
Confidence 45566 3567999999888 556653323222111111111111 1111 11112222 24567899
Q ss_pred EEEcccccccchhHHHHHHHHHHHHHCCCe-EEEeCCCC
Q 025807 158 FHYGSISLIAEPCRSTQLAAMNLAKESGSI-LSYDPNLR 195 (248)
Q Consensus 158 v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~ 195 (248)
+.++. +.+...++..++.++|.. +++|.++.
T Consensus 68 vffa~-------g~~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 68 IITCQ-------GGDYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred EEEcC-------CHHHHHHHHHHHHhCCCCeEEEECChh
Confidence 87753 335667888889999973 77787643
No 188
>PRK08005 epimerase; Validated
Probab=29.43 E-value=1.6e+02 Score=23.66 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
....++..|+.|+++.+-+++.-+ .+.++++++.+|.+.+
T Consensus 95 ~~~~l~~Ik~~G~k~GlAlnP~Tp--------~~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALNPATP--------LLPYRYLALQLDALMI 134 (210)
T ss_pred HHHHHHHHHHcCCcEEEEECCCCC--------HHHHHHHHHhcCEEEE
Confidence 457888899999886655544322 4566778888887763
No 189
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=28.90 E-value=2.9e+02 Score=21.71 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=45.4
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCC---CCCCCHH-HHHHHHHH-hhhhCCEEEeCHHHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRL---PLWPSEE-AAREGIMS-IWDQADIIKVKFETRYS 228 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~w~~~~-~~~~~~~~-~l~~~dil~~N~~E~~~ 228 (248)
..+++|+-|+. .......+++..++.|.++++++.... .=|.... .+...-+. ...++|.+++...+.+.
T Consensus 92 ~~~ii~ilg~~-----~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~ 166 (185)
T PF09314_consen 92 KYDIILILGYG-----IGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQD 166 (185)
T ss_pred cCCEEEEEcCC-----ccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHH
Confidence 35788877652 234556788888889999999996321 1133221 22233333 34689999998777766
Q ss_pred hHH
Q 025807 229 CIQ 231 (248)
Q Consensus 229 l~g 231 (248)
.+.
T Consensus 167 y~~ 169 (185)
T PF09314_consen 167 YIK 169 (185)
T ss_pred HHH
Confidence 544
No 190
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=28.79 E-value=1.9e+02 Score=19.70 Aligned_cols=61 Identities=15% Similarity=0.002 Sum_probs=37.4
Q ss_pred EEcccc-cccchhHHHHHHHHHHHHHCCCeEEEeCCCC--CCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 159 HYGSIS-LIAEPCRSTQLAAMNLAKESGSILSYDPNLR--LPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 159 ~~~g~~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
|++|-. ..++.......+..++.++.| .++++|... +..+ +...+......+|..||.+.+
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G-~~vvnPa~~~~~~~~-~~~~ym~~~l~~L~~cD~i~~ 65 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKG-YEVVNPAELGIPEGL-SWEEYMRICLAMLSDCDAIYM 65 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCC-CEEeCchhhCCCCCC-CHHHHHHHHHHHHHhCCEEEE
Confidence 455421 234555666777888888888 566677543 2222 234455566667789998876
No 191
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=28.72 E-value=1.6e+02 Score=23.78 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.++|++.+ ..+.. ......++..|+.|++..+-+++.-+ .+.++++++.+|.+.+
T Consensus 84 ~gad~I~~-----H~Ea~-~~~~~~l~~Ir~~g~k~GlalnP~T~--------~~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 84 AGATTISF-----HPEAS-RHVHRTIQLIKSHGCQAGLVLNPATP--------VDILDWVLPELDLVLV 138 (223)
T ss_pred hCCCEEEE-----cccCc-ccHHHHHHHHHHCCCceeEEeCCCCC--------HHHHHHHHhhcCEEEE
Confidence 46777743 22211 23457888899999886655554322 4567788889997763
No 192
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.32 E-value=1.3e+02 Score=20.90 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=21.1
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
+.|+++++... ..-.+++..+-++|+.|.++=
T Consensus 62 ~~D~V~I~tp~-------~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 62 DVDAVIIATPP-------SSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp TESEEEEESSG-------GGHHHHHHHHHHTTSEEEEES
T ss_pred cCCEEEEecCC-------cchHHHHHHHHHcCCEEEEEc
Confidence 67888776532 223466677777788888775
No 193
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=28.13 E-value=91 Score=18.40 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=19.5
Q ss_pred EeCHHHHHHhHHH----HHHHHHhhcCcce
Q 025807 220 KVKFETRYSCIQK----MLLHWYRYSSGFF 245 (248)
Q Consensus 220 ~~N~~E~~~l~g~----~~~~~~~~~~~~~ 245 (248)
+++.+|+..|+|. .-.+||+.....|
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~Gi~~ 31 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRNGIPF 31 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCCee
Confidence 5688999999983 6678888774433
No 194
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=28.12 E-value=1.8e+02 Score=25.74 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=24.5
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCC-CeEEEeCCCC
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESG-SILSYDPNLR 195 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~ 195 (248)
+.++|++...+- +......+..+.+.|+++| +++++|-...
T Consensus 140 ~t~~v~~EspsN-P~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 140 NTKLVFLESPSN-PTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp TEEEEEEESSBT-TTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred cceEEEEEcCCC-cccccccHHHHHHHHHHhCCceEEeecccc
Confidence 566666654322 1122233457888899999 9999999754
No 195
>PRK06234 methionine gamma-lyase; Provisional
Probab=28.08 E-value=3.6e+02 Score=23.81 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=13.3
Q ss_pred HHHHHHHHHHC--CCeEEEeCCC
Q 025807 174 QLAAMNLAKES--GSILSYDPNL 194 (248)
Q Consensus 174 ~~~~~~~a~~~--g~~v~~D~~~ 194 (248)
+.++.+.++++ |+.+++|-..
T Consensus 168 l~~I~~la~~~~~~i~livDea~ 190 (400)
T PRK06234 168 IKAISNIAHENNKECLVFVDNTF 190 (400)
T ss_pred HHHHHHHHHhcCCCCEEEEECCC
Confidence 34555666664 7777877754
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=28.06 E-value=2.6e+02 Score=25.26 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCceeEEEee------CCCHHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGKL------GDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~v------G~D~~g~~i~~~L~~~gI~~~ 105 (248)
+.-+|..++++|.+|+++..- .+....+.+.+.|++.||++.
T Consensus 195 g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~ 242 (475)
T PRK06327 195 GLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIH 242 (475)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 456677888999999988652 223467788899999999754
No 197
>PRK01215 competence damage-inducible protein A; Provisional
Probab=28.03 E-value=2.2e+02 Score=23.77 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEc
Q 025807 63 APANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD 110 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~ 110 (248)
++...+..|+.+|.++.....|++|.. .|.+.+++.--..+.+...
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~--~I~~~l~~a~~~~DlVItt 69 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIE--EIVSAFREAIDRADVVVST 69 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHH--HHHHHHHHHhcCCCEEEEe
Confidence 456678889999999999999999953 3555555532233444443
No 198
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.91 E-value=4.7e+02 Score=24.63 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=66.7
Q ss_pred EEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEEE
Q 025807 80 FVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIFH 159 (248)
Q Consensus 80 l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 159 (248)
-+-.+|-+.+|+.+.+.|++.|+++. .++.+ +.... .....|.+.+.-+ + .+++.+...-++++|.+.
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vv--vID~d-~~~v~--~~~~~g~~v~~GD----a---t~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRIT--VLERD-ISAVN--LMRKYGYKVYYGD----A---TQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEE--EEECC-HHHHH--HHHhCCCeEEEee----C---CCHHHHHhcCCccCCEEE
Confidence 35568889999999999999999863 33332 22111 1122343333221 1 133334444567888886
Q ss_pred EcccccccchhHHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCHHHHHHHHHHhh-hhCCEEEeCHHHHHHhHH
Q 025807 160 YGSISLIAEPCRSTQLAAMNLAKES--GSILSYDPNLRLPLWPSEEAAREGIMSIW-DQADIIKVKFETRYSCIQ 231 (248)
Q Consensus 160 ~~g~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~~w~~~~~~~~~~~~~l-~~~dil~~N~~E~~~l~g 231 (248)
++. + +.+....++..+|+. ..+++.-... ++..+.+. ..+|.+.+...|.....+
T Consensus 470 ~~~----~--d~~~n~~i~~~~r~~~p~~~IiaRa~~-----------~~~~~~L~~~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 470 ITC----N--EPEDTMKIVELCQQHFPHLHILARARG-----------RVEAHELLQAGVTQFSRETFSSALELG 527 (601)
T ss_pred EEe----C--CHHHHHHHHHHHHHHCCCCeEEEEeCC-----------HHHHHHHHhCCCCEEEccHHHHHHHHH
Confidence 543 2 224445565666654 3456655542 11222222 368888877666655544
No 199
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=27.80 E-value=1.3e+02 Score=24.32 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=32.4
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhh--hhCCEE
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIW--DQADII 219 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l--~~~dil 219 (248)
.++|++.+ +.+.....+...++.+++.|+++.+.+++..+ .+.+.+++ +.+|++
T Consensus 87 ~Gad~itv-----H~ea~~~~~~~~l~~ik~~G~~~gval~p~t~--------~e~l~~~l~~~~vD~V 142 (228)
T PTZ00170 87 AGASQFTF-----HIEATEDDPKAVARKIREAGMKVGVAIKPKTP--------VEVLFPLIDTDLVDMV 142 (228)
T ss_pred cCCCEEEE-----eccCCchHHHHHHHHHHHCCCeEEEEECCCCC--------HHHHHHHHccchhhhH
Confidence 36787744 22222233667888889999988877765422 33444555 556654
No 200
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=27.64 E-value=2.6e+02 Score=21.06 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=56.6
Q ss_pred HHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCCCcccccC---
Q 025807 67 VAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHPSADMLLC--- 143 (248)
Q Consensus 67 ~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~--- 143 (248)
.+...++-|.++.+++. +...+.+.+.+++.|++...+... + .. .+.+.... ... .+.. ...
T Consensus 19 ~~~~~~~~g~~v~~~s~---e~~~~~~~~~~~~~g~~~~~l~~~-g----~l-~~~d~~~~---~~s--~~~~-~~~~~~ 83 (187)
T cd01124 19 FLYAGLARGEPGLYVTL---EESPEELIENAESLGWDLERLEDE-G----LL-AIVDADPD---EIG--PAES-SLRLEL 83 (187)
T ss_pred HHHHHHHCCCcEEEEEC---CCCHHHHHHHHHHcCCChHHHHhc-C----Ce-EEEecCcc---ccc--hhhh-hhhHHH
Confidence 34445566888887764 445677888899999986644211 1 11 11121000 000 0000 000
Q ss_pred cccchHh-hhcCccEEEEcccccc-c---chhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 144 ESELDKN-LIKQGSIFHYGSISLI-A---EPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 144 ~~~~~~~-~~~~~~~v~~~g~~~~-~---~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
...+... ...+++++.++.+... . ......+..+++..++.|+.+++-.
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS 137 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 0011111 2246888988887642 2 2234455667778888888766544
No 201
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=27.41 E-value=91 Score=23.71 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 62 GAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 62 G~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
+.-.|++..|+..|....++-.+|=+..- +.|+++|.|.
T Consensus 14 ~NTGNI~R~ca~tga~LhlI~PlGF~l~d----k~lkRAGlDY 52 (155)
T COG0219 14 PNTGNIIRTCAATGAELHLIEPLGFDLDD----KRLKRAGLDY 52 (155)
T ss_pred CchhHHHHHHHhcCCeEEEEccCCCccch----hhhhhcccch
Confidence 34589999999999999999999966333 4566678774
No 202
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=26.84 E-value=1.9e+02 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=18.2
Q ss_pred cCCChHHHHHHHHHHcCCceeEEE
Q 025807 59 APGGAPANVAVGISRLGGSSAFVG 82 (248)
Q Consensus 59 ~~GG~a~N~a~ala~lG~~v~l~~ 82 (248)
.-||.|+=+|..|+..|.+|.++-
T Consensus 71 NNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 71 NNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEE
Confidence 457888888888888888877665
No 203
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=26.61 E-value=4.2e+02 Score=22.91 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=47.8
Q ss_pred EEeeC-CCHHHHHHHHHHHHCCCCccceEEc-CCCCceEEEEEEecCCCceEEEecCCCcccccCcccchHhhhcCccEE
Q 025807 81 VGKLG-DDEFGYMLANILKENNVDTSGVRYD-STARTALAFVTLRADGEREFLFFRHPSADMLLCESELDKNLIKQGSIF 158 (248)
Q Consensus 81 ~~~vG-~D~~g~~i~~~L~~~gI~~~~v~~~-~~~~T~~~~i~i~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 158 (248)
++.+| ....|..+++.|.+.+....-+... ..... |++- . . .+.. +..+.++...+++.|++
T Consensus 7 IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~a----------G~~l-~-~--~~~~--l~~~~~~~~~~~~vD~v 70 (336)
T PRK05671 7 IAVVGATGTVGEALVQILEERDFPVGTLHLLASSESA----------GHSV-P-F--AGKN--LRVREVDSFDFSQVQLA 70 (336)
T ss_pred EEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccC----------CCee-c-c--CCcc--eEEeeCChHHhcCCCEE
Confidence 45566 3567999999999765443221111 11111 2211 1 1 1111 12222222224688999
Q ss_pred EEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 159 HYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+++. +.+...+++..+.++|+ .++|.+..
T Consensus 71 Fla~-------p~~~s~~~v~~~~~~G~-~VIDlS~~ 99 (336)
T PRK05671 71 FFAA-------GAAVSRSFAEKARAAGC-SVIDLSGA 99 (336)
T ss_pred EEcC-------CHHHHHHHHHHHHHCCC-eEEECchh
Confidence 8753 23455678888888886 47788754
No 204
>PLN00175 aminotransferase family protein; Provisional
Probab=26.59 E-value=4.5e+02 Score=23.20 Aligned_cols=42 Identities=12% Similarity=-0.064 Sum_probs=26.5
Q ss_pred cCccEEEEccccc--ccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 153 KQGSIFHYGSISL--IAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 153 ~~~~~v~~~g~~~--~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
.+.+++++....- -.-.+.+.+.++++.|+++++.++.|-..
T Consensus 186 ~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y 229 (413)
T PLN00175 186 SKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVY 229 (413)
T ss_pred cCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4567777743221 11234466778888888888888877743
No 205
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=26.45 E-value=2.3e+02 Score=21.08 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHH
Q 025807 63 APANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKE 99 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~ 99 (248)
++...+..|.++|.++...+.+.+|+ +.+.+.+++
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~~ 55 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDK--DEIREALIE 55 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCH--HHHHHHHHH
Confidence 34567778999999999999999995 445665654
No 206
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=26.11 E-value=1.1e+02 Score=27.62 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCceeEEEee----C-CC-HHHHHHHHHHHHCCCCcc
Q 025807 63 APANVAVGISRLGGSSAFVGKL----G-DD-EFGYMLANILKENNVDTS 105 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~v----G-~D-~~g~~i~~~L~~~gI~~~ 105 (248)
.+.-+|..|+++|.+|+++..- . .| ...+.+.+.|++.||++.
T Consensus 188 ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~ 236 (466)
T PRK07845 188 TGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVL 236 (466)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3567888999999999999752 2 13 366788899999999854
No 207
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=26.04 E-value=1.6e+02 Score=23.78 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=44.5
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHHHHh---HHHHHHHHHhhcCcceee
Q 025807 174 QLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETRYSC---IQKMLLHWYRYSSGFFMF 247 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~~~l---~g~~~~~~~~~~~~~~~~ 247 (248)
...+++.+++.|+++++......+.. .+ ........+..+=+++++.... ..+.+.+|.+...+|+|.
T Consensus 156 ~~~~~~~~~~~g~piiisSdAh~~~~-----l~-~~~~~~~l~~~~Gl~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 226 (237)
T PRK00912 156 FRDNLALARKYDFPLVLTSGAMSCYD-----LR-SPREMIALAELFGMEEDEALKALSYYPESIIKKNRNRKNYVIE 226 (237)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCcccc-----cC-CHHHHHHHHHHcCCCHHHHHHHHHHhHHHHHHhhccCCCcccc
Confidence 35788999999988888776544321 11 2233334444555677777775 346788888999998874
No 208
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=26.02 E-value=4.9e+02 Score=23.46 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.5
Q ss_pred eeEEEeeCC----CHHHHHHHHHHHHCCCC
Q 025807 78 SAFVGKLGD----DEFGYMLANILKENNVD 103 (248)
Q Consensus 78 v~l~~~vG~----D~~g~~i~~~L~~~gI~ 103 (248)
..-+..||. +.+|..+.+.|.+.|..
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~ 36 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYK 36 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCC
Confidence 334555553 45899999999998874
No 209
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.94 E-value=1.2e+02 Score=18.38 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=26.0
Q ss_pred eEEEeeCCCH-----HHHHHHHHHHHCCCCccceEEcCCCCceEEEEE
Q 025807 79 AFVGKLGDDE-----FGYMLANILKENNVDTSGVRYDSTARTALAFVT 121 (248)
Q Consensus 79 ~l~~~vG~D~-----~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~ 121 (248)
.+++.+|... ....+.+.|.+.||+...+..... ....++++
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s-~~~isf~i 48 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSS-EYNISFVV 48 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-cceEEEEE
Confidence 4666676531 345689999999999886654322 34444443
No 210
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.90 E-value=2.7e+02 Score=21.57 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=34.4
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEe-CCCCCCCCCCHHHHHHHHHHhhh-hCCEEEeC
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD-PNLRLPLWPSEEAAREGIMSIWD-QADIIKVK 222 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~~w~~~~~~~~~~~~~l~-~~dil~~N 222 (248)
-.++|++.+-+. ...+...++++.++++|+++.++ +++. ++. +... .+. .+|++..+
T Consensus 75 ~aGad~i~~h~~-----~~~~~~~~~i~~~~~~g~~~~v~~~~~~-----t~~---e~~~-~~~~~~d~v~~~ 133 (202)
T cd04726 75 KAGADIVTVLGA-----APLSTIKKAVKAAKKYGKEVQVDLIGVE-----DPE---KRAK-LLKLGVDIVILH 133 (202)
T ss_pred hcCCCEEEEEee-----CCHHHHHHHHHHHHHcCCeEEEEEeCCC-----CHH---HHHH-HHHCCCCEEEEc
Confidence 346777765332 12244567888899999999987 5542 222 2222 334 78887763
No 211
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.70 E-value=2.3e+02 Score=19.49 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 64 PANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
+.-+.-.|...|.++.++|.=+.- ..+.+.+.|++.|+++
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~-s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSR-SREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS--HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC-CHHHHHHHHHhcCcCC
Confidence 366777888889999999988766 4566888889999984
No 212
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=25.64 E-value=65 Score=26.81 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=27.4
Q ss_pred ceeEEEee-CCCHHHHHHHHHHHHCCCCccceEEcCC
Q 025807 77 SSAFVGKL-GDDEFGYMLANILKENNVDTSGVRYDST 112 (248)
Q Consensus 77 ~v~l~~~v-G~D~~g~~i~~~L~~~gI~~~~v~~~~~ 112 (248)
++.+++-+ |.| |..+.+.|-..|-++.++.+...
T Consensus 29 kvALITGItGQD--GSYLaEfLL~KgYeVHGiiRRsS 63 (376)
T KOG1372|consen 29 KVALITGITGQD--GSYLAEFLLSKGYEVHGIIRRSS 63 (376)
T ss_pred eEEEEecccCCC--chHHHHHHHhCCceeeEEEeecc
Confidence 47888775 677 88999999999999998877643
No 213
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=25.61 E-value=94 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEeC
Q 025807 171 RSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
.+....+++.|+++|+++.-|+
T Consensus 31 G~iAe~II~~Ake~~Vpi~edp 52 (92)
T COG2257 31 GEIAEKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred hHHHHHHHHHHHHcCCCcccCH
Confidence 3556689999999999998887
No 214
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.52 E-value=1.1e+02 Score=27.66 Aligned_cols=45 Identities=27% Similarity=0.213 Sum_probs=31.4
Q ss_pred cCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCc
Q 025807 59 APGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDT 104 (248)
Q Consensus 59 ~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~ 104 (248)
-.|+.|.-+|..|+..|.+|.++..- +....+.+.+.|++.||.+
T Consensus 23 G~G~~G~~~A~~L~~~G~~V~~~d~~-~~~~~~~~~~~l~~~gv~~ 67 (480)
T PRK01438 23 GLGVSGFAAADALLELGARVTVVDDG-DDERHRALAAILEALGATV 67 (480)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC-chhhhHHHHHHHHHcCCEE
Confidence 45667777888999999987765432 2224455677899889874
No 215
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=25.09 E-value=2e+02 Score=19.80 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEe
Q 025807 90 GYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFF 133 (248)
Q Consensus 90 g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~ 133 (248)
=+.+.+.|++.|+.+...........+..+.+.|++|.+--++.
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYA 118 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEE
Confidence 35688999999998542211111223456667788888765543
No 216
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=25.05 E-value=4e+02 Score=22.12 Aligned_cols=39 Identities=8% Similarity=-0.105 Sum_probs=25.4
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+.++++++.....+.. ..+.++.+.++++|+++++|-..
T Consensus 154 ~~k~v~l~~p~~~G~~--~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 154 DAKAAVITNPTYYGIC--YNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CceEEEEECCCCCCEe--cCHHHHHHHHHhcCCeEEEECcc
Confidence 4677777642221111 12467888899999999999864
No 217
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=24.66 E-value=1.3e+02 Score=26.57 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 176 AAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 176 ~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
.+.+.|+++|+++++|-....+ | .+.++-..+||+.=+
T Consensus 168 ~ia~iAh~~gvpliVDNT~atp-y--------l~rP~~hGADIVvHS 205 (426)
T COG2873 168 AIAEIAHRHGVPLIVDNTFATP-Y--------LCRPIEHGADIVVHS 205 (426)
T ss_pred HHHHHHHHcCCcEEEecCCCcc-e--------ecchhhcCCCEEEEe
Confidence 5777799999999999976543 2 344555678888643
No 218
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=24.55 E-value=2.9e+02 Score=22.51 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 171 RSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
.+.+.+-+.+++ .+.++++++... +.+.+.+....+.+++|++=.|
T Consensus 54 ~~~i~~e~~~~~-~~~~vivnv~~~-----~~ee~~~~a~~v~~~~d~IdiN 99 (231)
T TIGR00736 54 NSYIIEQIKKAE-SRALVSVNVRFV-----DLEEAYDVLLTIAEHADIIEIN 99 (231)
T ss_pred HHHHHHHHHHHh-hcCCEEEEEecC-----CHHHHHHHHHHHhcCCCEEEEE
Confidence 344444455554 345777777653 4566666666666778877765
No 219
>smart00084 NMU Neuromedin U. Neuromedin U (NmU) is a vertebrate peptide which stimulates uterine smooth muscle contraction and causes selective vasoconstriction. Like most other active peptides, it is proteolytically processed from a larger precursor protein. The mature peptides are 8 (NmU-8) to 25 (NmU-25) residues long and C- terminally amidated. The sequence of the C-terminal extremity of NmU is extremely well conserved in mammals, birds and amphibians.
Probab=24.53 E-value=37 Score=17.19 Aligned_cols=8 Identities=50% Similarity=1.331 Sum_probs=4.1
Q ss_pred cCcceeeC
Q 025807 241 SSGFFMFQ 248 (248)
Q Consensus 241 ~~~~~~~~ 248 (248)
+.|||.||
T Consensus 15 srgyFLfR 22 (26)
T smart00084 15 SRGYFLFR 22 (26)
T ss_pred cCceEEec
Confidence 44555554
No 220
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=24.51 E-value=2.2e+02 Score=22.90 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=35.3
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.++|++.+ ..+.. ......++..|+.|++..+=+++.-+ .+.++++++.+|.+..
T Consensus 80 ~gad~i~~-----H~Ea~-~~~~~~l~~ik~~g~k~GlalnP~Tp--------~~~i~~~l~~~D~vlv 134 (220)
T PRK08883 80 AGASMITF-----HVEAS-EHVDRTLQLIKEHGCQAGVVLNPATP--------LHHLEYIMDKVDLILL 134 (220)
T ss_pred hCCCEEEE-----cccCc-ccHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHhCCeEEE
Confidence 46777743 22211 23567888899999886655554322 4577788888887764
No 221
>PRK10534 L-threonine aldolase; Provisional
Probab=24.47 E-value=1.6e+02 Score=24.95 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=18.6
Q ss_pred ccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEe
Q 025807 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD 191 (248)
Q Consensus 155 ~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D 191 (248)
.++++++....-.-.+.+.+.++++.++++++.+++|
T Consensus 130 ~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvD 166 (333)
T PRK10534 130 TRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVD 166 (333)
T ss_pred ceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEee
Confidence 4555555322111233445555566666666666665
No 222
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=24.34 E-value=88 Score=26.88 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCC-CHHHHHHHHHHhhhhCCEEEe
Q 025807 174 QLAAMNLAKESGSILSYDPNLRLPLWP-SEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 174 ~~~~~~~a~~~g~~v~~D~~~~~~~w~-~~~~~~~~~~~~l~~~dil~~ 221 (248)
+..+-++.++.|++|+.|+-.... |. +.....+.++.+.+++|++.+
T Consensus 176 l~~a~~~l~~~~v~vSaDVfG~~~-~~~~~~~iGQ~~~~~a~~vD~IsP 223 (316)
T PF13200_consen 176 LAYAREELHPYGVPVSADVFGYVA-WSPDDMGIGQDFEKIAEYVDYISP 223 (316)
T ss_pred HHHHHHHHhHcCCCEEEEeccccc-ccCCCCCcCCCHHHHhhhCCEEEe
Confidence 344445556679999999953332 43 223346678889999999996
No 223
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=24.15 E-value=2.1e+02 Score=19.61 Aligned_cols=50 Identities=12% Similarity=-0.042 Sum_probs=29.4
Q ss_pred eCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEe
Q 025807 84 LGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFF 133 (248)
Q Consensus 84 vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~ 133 (248)
+.+...=+.+.+.+++.|+.............+..+.+.|++|.+-.+.+
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEe
Confidence 44333446688899999998653311111122345667788888765543
No 224
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.12 E-value=1.3e+02 Score=26.46 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCceeEEEe---e-C---CCHHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGK---L-G---DDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~---v-G---~D~~g~~i~~~L~~~gI~~~ 105 (248)
+.-+|..|+++|.+|+++.. + + .....+.+++.+++.||++.
T Consensus 156 g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 156 GLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred HHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 56677888889999998864 1 1 22356778888999998853
No 225
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.82 E-value=1.8e+02 Score=24.26 Aligned_cols=43 Identities=7% Similarity=-0.122 Sum_probs=33.5
Q ss_pred hhhcCccEEEEccccc--ccchhHHHHHHHHHHHHHCCCeEEEeC
Q 025807 150 NLIKQGSIFHYGSISL--IAEPCRSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~--~~~~~~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
..+...|||.++|=+. ..++..+=++.+.++|.++|+++.|=-
T Consensus 184 ~~~~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQ 228 (261)
T PF07505_consen 184 LDLEGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQ 228 (261)
T ss_pred ccCCCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3467899999987443 344667788899999999999998865
No 226
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=23.79 E-value=1.7e+02 Score=22.47 Aligned_cols=16 Identities=31% Similarity=0.169 Sum_probs=8.2
Q ss_pred HHHHHhhhhCCEEEeC
Q 025807 207 EGIMSIWDQADIIKVK 222 (248)
Q Consensus 207 ~~~~~~l~~~dil~~N 222 (248)
+.++.-++.+|+++.+
T Consensus 49 ~~~~~aia~ADii~~s 64 (164)
T PF11965_consen 49 EECEAAIARADIIFGS 64 (164)
T ss_pred HHHHHHHHhCCEEEee
Confidence 4444555555555543
No 227
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.64 E-value=3.7e+02 Score=22.30 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=71.8
Q ss_pred HHHHHHHH-H-cCCceeEEEeeCC-CHHH-HHHHHHHHHCCCCccceEEcCCCCceEEEEE---EecCCCceEEEecCCC
Q 025807 65 ANVAVGIS-R-LGGSSAFVGKLGD-DEFG-YMLANILKENNVDTSGVRYDSTARTALAFVT---LRADGEREFLFFRHPS 137 (248)
Q Consensus 65 ~N~a~ala-~-lG~~v~l~~~vG~-D~~g-~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~---i~~~g~r~~~~~~~~~ 137 (248)
++....++ + ...+..++++... -.+| +.+.+.+++.|++- +.+ ++.+....--+ ....|-..+... .
T Consensus 77 ~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdG--vii-pDLp~ee~~~~~~~~~~~gl~~I~lv---a 150 (258)
T PRK13111 77 FELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDG--LII-PDLPPEEAEELRAAAKKHGLDLIFLV---A 150 (258)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcE--EEE-CCCCHHHHHHHHHHHHHcCCcEEEEe---C
Confidence 45555555 2 2456677777653 2233 56788999999984 333 33232111000 112233333322 1
Q ss_pred cccccCcccchHhhhcCccEEEE-cc--cccccchhHHHHHHHHHHHHHC-CCeEEEeCCCCCCCCCCHHHHHHHHHHhh
Q 025807 138 ADMLLCESELDKNLIKQGSIFHY-GS--ISLIAEPCRSTQLAAMNLAKES-GSILSYDPNLRLPLWPSEEAAREGIMSIW 213 (248)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~-~g--~~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~~w~~~~~~~~~~~~~l 213 (248)
+. .+.+.+..-.-....++|+ +. .+...........+.+++.++. +.++++-.+-+ + ++.+..++
T Consensus 151 p~--t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~-----~----~e~v~~~~ 219 (258)
T PRK13111 151 PT--TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGIS-----T----PEQAAAIA 219 (258)
T ss_pred CC--CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccC-----C----HHHHHHHH
Confidence 11 1223333222234556665 22 2222112223455666666664 67888777643 2 45666677
Q ss_pred hhCCEEEeCHHHHHH
Q 025807 214 DQADIIKVKFETRYS 228 (248)
Q Consensus 214 ~~~dil~~N~~E~~~ 228 (248)
..+|-+++--.=.+.
T Consensus 220 ~~ADGviVGSaiv~~ 234 (258)
T PRK13111 220 AVADGVIVGSALVKI 234 (258)
T ss_pred HhCCEEEEcHHHHHH
Confidence 789998875443333
No 228
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=23.56 E-value=1.6e+02 Score=23.79 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=35.3
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhh
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQ 215 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~ 215 (248)
+.++|++..-+ ..++...++.+.+++.|++.++=++.... ...++.+++.+..
T Consensus 49 i~~~Dl~I~y~------lHPDl~~~l~~~~~e~g~kavIvp~~~~~-----~g~~~~lk~~~e~ 101 (217)
T PF02593_consen 49 IPEADLLIAYG------LHPDLTYELPEIAKEAGVKAVIVPSESPK-----PGLRRQLKKQLEE 101 (217)
T ss_pred CCCCCEEEEec------cCchhHHHHHHHHHHcCCCEEEEecCCCc-----cchHHHHHHHHHh
Confidence 77889885533 23466678999999999988887875433 1234555555554
No 229
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=23.26 E-value=2.6e+02 Score=23.92 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=30.3
Q ss_pred CcccchHhhhcCccEEEEccccc-c-cchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 143 CESELDKNLIKQGSIFHYGSISL-I-AEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 143 ~~~~~~~~~~~~~~~v~~~g~~~-~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
+++.+....-++.++++++...- . .-.+.+...++++.|+++++.++.|-..
T Consensus 125 d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y 178 (350)
T TIGR03537 125 RLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECY 178 (350)
T ss_pred CHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 33434332234567777664321 1 1234566778888888888888877753
No 230
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=23.20 E-value=2.1e+02 Score=18.85 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.2
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCe
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSI 187 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~ 187 (248)
+.+..+.|++-.+..++.+.+++.++.++|++.|.-
T Consensus 9 i~G~ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAn 44 (74)
T TIGR03884 9 IPGLQLYYLGIVSTESDNVDEIVENLREKVKAKGGM 44 (74)
T ss_pred CCCeEEEEEEEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 345556555554555667889999999999999864
No 231
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.19 E-value=1.4e+02 Score=26.93 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCceeEEEee----C--CCHHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGKL----G--DDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~v----G--~D~~g~~i~~~L~~~gI~~~ 105 (248)
|.-+|..++++|.+|.++-.- . +....+.+.+.|++.||++.
T Consensus 184 g~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 184 GMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 567788999999999887542 1 22467888999999999854
No 232
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=23.16 E-value=1.9e+02 Score=19.20 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.0
Q ss_pred HHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCC
Q 025807 67 VAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNV 102 (248)
Q Consensus 67 ~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI 102 (248)
.....+++|.++.|.++=+.|-..+.+.+.|.+.|=
T Consensus 26 ~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rgK 61 (78)
T PF10678_consen 26 KAAIIEKFGEDARFHTCSAEGMTADELVDFLEERGK 61 (78)
T ss_pred HHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcCC
Confidence 455678999999999999999888999999998764
No 233
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.13 E-value=1.9e+02 Score=17.57 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=25.8
Q ss_pred eEEEeeCCC-----HHHHHHHHHHHHCCCCccceEEcCCCCceEEEEE
Q 025807 79 AFVGKLGDD-----EFGYMLANILKENNVDTSGVRYDSTARTALAFVT 121 (248)
Q Consensus 79 ~l~~~vG~D-----~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~ 121 (248)
.+++.+|.+ .....+.+.|.+.||+...+.... .....++++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~-s~~~isf~v 48 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA-SEINISCVI 48 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC-ccceEEEEE
Confidence 456666642 245568899999999987665422 234444443
No 234
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=23.00 E-value=2.8e+02 Score=22.13 Aligned_cols=63 Identities=11% Similarity=-0.030 Sum_probs=40.6
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe----CHHHHH
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKE-SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV----KFETRY 227 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~-~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~----N~~E~~ 227 (248)
...|.+.++|... ...+.+.++++..|+ ..++|++-|+... .+-+++|.++. |-..-.
T Consensus 23 ~gtDaI~VGGS~g---vt~~~~~~~v~~ik~~~~lPvilfp~~~~--------------~i~~~aD~~~~~sllns~~~~ 85 (205)
T TIGR01769 23 AGTDAIMVGGSLG---IVESNLDQTVKKIKKITNLPVILFPGNVN--------------GLSRYADAVFFMSLLNSADTY 85 (205)
T ss_pred cCCCEEEEcCcCC---CCHHHHHHHHHHHHhhcCCCEEEECCCcc--------------ccCcCCCEEEEEEeecCCCcc
Confidence 4479999998632 345666777788887 5689998887532 23355666553 555555
Q ss_pred HhHHH
Q 025807 228 SCIQK 232 (248)
Q Consensus 228 ~l~g~ 232 (248)
.+.|.
T Consensus 86 ~i~g~ 90 (205)
T TIGR01769 86 FIVGA 90 (205)
T ss_pred hhhhH
Confidence 55554
No 235
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=22.99 E-value=1.4e+02 Score=26.76 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCceeEEEee---C---CCHHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGKL---G---DDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~v---G---~D~~g~~i~~~L~~~gI~~~ 105 (248)
|.-.|..++++|.+|+++..- . +....+.+.+.|++.||+..
T Consensus 160 g~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 160 SLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred HHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 556788889999999998752 1 22367788999999999853
No 236
>PRK13018 cell division protein FtsZ; Provisional
Probab=22.99 E-value=5.3e+02 Score=22.81 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=71.2
Q ss_pred cccCCChHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecCC
Q 025807 57 KKAPGGAPANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRHP 136 (248)
Q Consensus 57 ~~~~GG~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~~ 136 (248)
-.-.||.|.|+.-.+.+.|..-.=+-.+..|. +.|+....+.. +.. ....|. . ....+++..-. .
T Consensus 33 ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~------q~L~~~~a~~k-i~i-G~~~t~-G---~GaG~dp~~G~---~ 97 (378)
T PRK13018 33 VVGCGGAGNNTINRLYEIGIEGAETIAINTDA------QHLAMIKADKK-ILI-GKSLTR-G---LGAGGDPEVGR---K 97 (378)
T ss_pred EEEeCCcHHHHHHHHHHcCCCCceEEEEECCH------HHHhcCCCCcE-Eec-CCccCC-C---CCCCCChHHHH---H
Confidence 34579999999999999986644444567774 45554333322 111 110000 0 00011111000 0
Q ss_pred CcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHH---HHHHHHHHhh
Q 025807 137 SADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEE---AAREGIMSIW 213 (248)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~---~~~~~~~~~l 213 (248)
.+. -..+.+ .+.++++|.|++..- +-......+...+++.+++.+..++--...... +.... .....+..+.
T Consensus 98 aae--e~~d~I-~~~le~~D~vfI~aG-LGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~-~EG~~r~~nA~~gL~~L~ 172 (378)
T PRK13018 98 AAE--ESRDEI-KEVLKGADLVFVTAG-MGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFK-FEGRARMQKAEEGIERLR 172 (378)
T ss_pred HHH--HHHHHH-HHHhcCCCEEEEEee-ccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcc-cccHhHHHHHHHHHHHHH
Confidence 000 011222 245788998877431 212222233346667778877653321111100 11111 2346778888
Q ss_pred hhCCEEEe--CHHHHH
Q 025807 214 DQADIIKV--KFETRY 227 (248)
Q Consensus 214 ~~~dil~~--N~~E~~ 227 (248)
+++|.+++ |+.=..
T Consensus 173 e~~D~vividNd~L~~ 188 (378)
T PRK13018 173 EAADTVIVIDNNRLLD 188 (378)
T ss_pred HhCCEEEEEecHHHHH
Confidence 88888775 444333
No 237
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=22.96 E-value=1.4e+02 Score=20.74 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCc-------eeEEEeeCCCHHHHHHHHHHHH
Q 025807 65 ANVAVGISRLGGS-------SAFVGKLGDDEFGYMLANILKE 99 (248)
Q Consensus 65 ~N~a~ala~lG~~-------v~l~~~vG~D~~g~~i~~~L~~ 99 (248)
..+...|..+|.+ ..++|.+|.|...+.+++.+++
T Consensus 58 l~~~~~L~~~gl~~~~a~~~g~~IGflGvd~ir~~~~r~~~~ 99 (100)
T PF05106_consen 58 LFARSLLEYFGLPQSLAVFIGGFIGFLGVDKIRELIRRFINK 99 (100)
T ss_pred HHHHHHHHHhCCChhhhhhheeeeeccCHHHHHHHHHHHhhc
Confidence 3444455666765 5789999999999988887764
No 238
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=22.93 E-value=5.1e+02 Score=22.51 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=24.4
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCC
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLR 195 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 195 (248)
+.++++|+++++. +.+...++..++.+.|+ +++|.+..
T Consensus 65 ~~~~~~D~vf~a~-------p~~~s~~~~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 65 DSFDGVDIALFSA-------GGSISKKFGPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred HHHcCCCEEEECC-------CcHHHHHHHHHHHhCCC-EEEECCch
Confidence 3356789987753 23455677777777775 57777643
No 239
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.92 E-value=4.4e+02 Score=21.85 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=45.9
Q ss_pred hhhcCccEEEEcccccccch-hHH---HHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHH
Q 025807 150 NLIKQGSIFHYGSISLIAEP-CRS---TQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFET 225 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~-~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E 225 (248)
..+.++|++.++|-.+..+. ... ....++..++..|+++++=....-+ +.. ...+.....++..+|.+.+=+..
T Consensus 60 ~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP-~~~-~~~r~~~~~~l~~~~~i~vRD~~ 137 (298)
T TIGR03609 60 RALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGP-LRR-RLSRWLVRRVLRGCRAISVRDAA 137 (298)
T ss_pred HHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCC-cCC-HHHHHHHHHHHccCCEEEEeCHH
Confidence 45778898888765443321 111 1223556677778766543332222 122 23466778899999999985555
Q ss_pred HHHhH
Q 025807 226 RYSCI 230 (248)
Q Consensus 226 ~~~l~ 230 (248)
-..++
T Consensus 138 S~~~l 142 (298)
T TIGR03609 138 SYRLL 142 (298)
T ss_pred HHHHH
Confidence 44443
No 240
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=22.79 E-value=3.9e+02 Score=23.39 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=53.8
Q ss_pred hHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCC-CC---CHHHHHHHHHHhhhhCCEEEeCH
Q 025807 148 DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPL-WP---SEEAAREGIMSIWDQADIIKVKF 223 (248)
Q Consensus 148 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-w~---~~~~~~~~~~~~l~~~dil~~N~ 223 (248)
..++.++..+++++=+...+--+.-.+..+++..-++|+.++...|..+.. .. ..+.+.+.+.-+-.+++++-++-
T Consensus 121 a~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~ 200 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDG 200 (362)
T ss_pred HHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecC
Confidence 345678888999988766554444555678888899999988887754422 11 33556666776777899998865
Q ss_pred H
Q 025807 224 E 224 (248)
Q Consensus 224 ~ 224 (248)
.
T Consensus 201 ~ 201 (362)
T PF03969_consen 201 G 201 (362)
T ss_pred C
Confidence 5
No 241
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=22.75 E-value=2e+02 Score=19.13 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCC
Q 025807 65 ANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNV 102 (248)
Q Consensus 65 ~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI 102 (248)
.-.+...+++|.++.|.+.=.+|-..+.+++.|.+.|=
T Consensus 22 ~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kgK 59 (77)
T TIGR03853 22 SLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKGK 59 (77)
T ss_pred HHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCCC
Confidence 33566788999999999999999888999999998774
No 242
>COG1485 Predicted ATPase [General function prediction only]
Probab=22.64 E-value=4.4e+02 Score=23.19 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=49.1
Q ss_pred hHhhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCC-CC---CHHHHHHHHHHhhhhCCEEEeCH
Q 025807 148 DKNLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPL-WP---SEEAAREGIMSIWDQADIIKVKF 223 (248)
Q Consensus 148 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-w~---~~~~~~~~~~~~l~~~dil~~N~ 223 (248)
..+...++++++++-+...+-.+--.+..+++..-++|+.++...|..+.. .. ..+.+.+.+.-+-.+++++.++-
T Consensus 124 A~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~ 203 (367)
T COG1485 124 ADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDG 203 (367)
T ss_pred HHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecC
Confidence 346788999999998765544444455578888889999999888755432 11 22333444444555777777543
No 243
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=22.40 E-value=1e+02 Score=20.48 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHCCCC
Q 025807 86 DDEFGYMLANILKENNVD 103 (248)
Q Consensus 86 ~D~~g~~i~~~L~~~gI~ 103 (248)
.||.|+.+.+.|++.|.+
T Consensus 14 lDPqG~ai~~al~~lG~~ 31 (80)
T PF02700_consen 14 LDPQGEAIKRALHRLGYD 31 (80)
T ss_dssp --HHHHHHHHHHHHTT-T
T ss_pred cCcHHHHHHHHHHHcCCc
Confidence 599999999999999987
No 244
>PLN02271 serine hydroxymethyltransferase
Probab=22.33 E-value=2.2e+02 Score=26.75 Aligned_cols=63 Identities=19% Similarity=0.135 Sum_probs=39.1
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
..+.+++++++.......+.+ .+.+.|++.|+.+.+|......+... .....-+.++|++..+
T Consensus 296 ~~rPKLII~g~Saypr~~D~~---~i~eIAdevGA~LmvD~AH~aGLIa~-----g~~~sP~~~aDvvt~T 358 (586)
T PLN02271 296 DFRPKILICGGSSYPREWDYA---RFRQIADKCGAVLMCDMAHISGLVAA-----KECVNPFDYCDIVTST 358 (586)
T ss_pred hcCCeEEEECchhccCcCCHH---HHHHHHHHcCCEEEEECccccccccc-----CcCCCCCcCCcEEEeC
Confidence 457899999886554444444 45556778899999999765443321 0111123568877753
No 245
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=22.23 E-value=87 Score=24.80 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.3
Q ss_pred ccCCChHHHHHHHHHHcCCc
Q 025807 58 KAPGGAPANVAVGISRLGGS 77 (248)
Q Consensus 58 ~~~GG~a~N~a~ala~lG~~ 77 (248)
.-.||-|.++|..|++.|..
T Consensus 27 vG~GglGs~ia~~La~~Gvg 46 (200)
T TIGR02354 27 CGLGGLGSNVAINLARAGIG 46 (200)
T ss_pred ECcCHHHHHHHHHHHHcCCC
Confidence 45689999999999999974
No 246
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.13 E-value=2.6e+02 Score=18.93 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=30.0
Q ss_pred hhhcCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 025807 150 NLIKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 150 ~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
..+..+|+|.+ +.+-.+......+-+.|++.++++++--+.
T Consensus 44 ~~i~~aD~VIv----~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 44 SKIKKADLVIV----FTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HhcCCCCEEEE----EeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 34667888854 234456677888999999999998887643
No 247
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.06 E-value=2.7e+02 Score=24.95 Aligned_cols=68 Identities=12% Similarity=0.015 Sum_probs=36.8
Q ss_pred hcCccEEEEcccccccchhHHHHHHH--HHHHHH--CCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHH
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAA--MNLAKE--SGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETR 226 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~--~~~a~~--~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~ 226 (248)
.+++|++.++..+...+...+....+ ++.+++ .+++|++-= +... ..++.+...++.+|+++.++.|.
T Consensus 38 ~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG-c~as------~~~ee~~~~~~~vD~vv~~e~~~ 109 (444)
T PRK14325 38 PEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG-CVAQ------QEGEEILKRAPYVDIVFGPQTLH 109 (444)
T ss_pred cCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC-chhc------cCHHHHHhhCCCCcEEECCCCHH
Confidence 45689998887766554433333222 333344 355555533 2211 12344444567899999887653
No 248
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=22.04 E-value=3.8e+02 Score=20.79 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh---hCCEEEeCHHHHHHhHHHHHHHHHhhcCcc
Q 025807 169 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD---QADIIKVKFETRYSCIQKMLLHWYRYSSGF 244 (248)
Q Consensus 169 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~---~~dil~~N~~E~~~l~g~~~~~~~~~~~~~ 244 (248)
....++.+++++.++.|+ +.+++..++.+++. .+.+.++.++|+. +....+.+.|.+.+|.
T Consensus 55 itKtaI~~aLr~mkKsGi--------------~k~EL~~~~~eil~gK~kS~La~ctD~Eal-~iDrVI~~vL~~~~gl 118 (176)
T PF06576_consen 55 ITKTAINEALRRMKKSGI--------------SKPELEAFLREILNGKQKSWLAFCTDDEAL-FIDRVIGEVLAEHPGL 118 (176)
T ss_pred ccHHHHHHHHHHHHHhcC--------------CcHHHHHHHHHHhCcccccccceecchHHH-HHHHHHHHHHHhCcch
Confidence 445677788888888874 12345555566554 6889999987766 4466677777777765
No 249
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=22.01 E-value=3.2e+02 Score=24.46 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCccceEEc
Q 025807 63 APANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTSGVRYD 110 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~~v~~~ 110 (248)
++...+..|..+|.++...+.|++|. +.|.+.|++.--..+.+...
T Consensus 21 N~~~l~~~L~~~G~~v~~~~~v~Dd~--~~i~~~l~~a~~~~DlVItt 66 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRTTVGDNP--ERLKTIIRIASERADVLIFN 66 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCH--HHHHHHHHHHhcCCCEEEEc
Confidence 45667788899999999999999995 33666666553334445443
No 250
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=21.90 E-value=2.5e+02 Score=22.49 Aligned_cols=66 Identities=11% Similarity=0.195 Sum_probs=39.0
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCC-eEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS-ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.+.+++.++.. . .....+...+.+++.++++. .+.++|-+... |+..+-..+.+..+.+++|.+..
T Consensus 149 ~~t~vvIiSDg-~-~~~~~~~~~~~l~~l~~r~~rviwLnP~~~~~-~~~~~~~~~~~~~~~~~v~~~~~ 215 (222)
T PF05762_consen 149 RRTTVVIISDG-W-DTNDPEPLAEELRRLRRRGRRVIWLNPLPRAG-WPGYDPVARGYRAALPYVDACRP 215 (222)
T ss_pred cCcEEEEEecc-c-ccCChHHHHHHHHHHHHhCCEEEEECCccccc-CCCCChHHHHHHHhCChhhhcCC
Confidence 56778888764 2 22334445556666666665 56688864333 66444335566777777765543
No 251
>PLN00196 alpha-amylase; Provisional
Probab=21.77 E-value=1e+02 Score=27.72 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEeC
Q 025807 171 RSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
.+..+++++.++++|++|++|.
T Consensus 91 ~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 91 EAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4667899999999999999997
No 252
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.46 E-value=2.9e+02 Score=22.51 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=61.5
Q ss_pred eEEEeeCCCHHH-HHHHHHHHHCCCCccceEEcCCCCceEEEEEEecCCCceEEEecC-CCccccc---CcccchHh-hh
Q 025807 79 AFVGKLGDDEFG-YMLANILKENNVDTSGVRYDSTARTALAFVTLRADGEREFLFFRH-PSADMLL---CESELDKN-LI 152 (248)
Q Consensus 79 ~l~~~vG~D~~g-~~i~~~L~~~gI~~~~v~~~~~~~T~~~~i~i~~~g~r~~~~~~~-~~~~~~~---~~~~~~~~-~~ 152 (248)
...+.+..|... ..-++.+++.|++.-|+-+-++...+-.. + |...+-..+. ...+.++ .|+.+-.. .-
T Consensus 15 I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNit-f----Gp~~i~~i~~~~~~DvHLMv~~P~~~i~~~~~ 89 (228)
T PRK08091 15 ISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFT-V----GAIAIKQFPTHCFKDVHLMVRDQFEVAKACVA 89 (228)
T ss_pred EEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccc-c----CHHHHHHhCCCCCEEEEeccCCHHHHHHHHHH
Confidence 334556677322 34567788889998777666654333211 1 1100000000 0011111 23322222 23
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCC--eEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS--ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~--~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
.++|++.+ ..+.. ......++..|+.|+ +..+-+++.-+ .+.++++++.+|.+.+
T Consensus 90 aGad~It~-----H~Ea~-~~~~~~l~~Ik~~g~~~kaGlalnP~Tp--------~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 90 AGADIVTL-----QVEQT-HDLALTIEWLAKQKTTVLIGLCLCPETP--------ISLLEPYLDQIDLIQI 146 (228)
T ss_pred hCCCEEEE-----cccCc-ccHHHHHHHHHHCCCCceEEEEECCCCC--------HHHHHHHHhhcCEEEE
Confidence 46777733 22211 234578888899997 65544443222 4577888888997763
No 253
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.39 E-value=1e+02 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHHHHcCCceeEEEeeCCCHHHHHHHHHHHHCCCCcc
Q 025807 68 AVGISRLGGSSAFVGKLGDDEFGYMLANILKENNVDTS 105 (248)
Q Consensus 68 a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~~gI~~~ 105 (248)
|..++..|.+|.+++ |.|++|..|...-+++|++..
T Consensus 35 aRy~Rl~G~~v~fvt--GtDeHGt~I~~~A~~~g~tP~ 70 (558)
T COG0143 35 ARYLRLRGYEVFFLT--GTDEHGTKIELKAEKEGITPQ 70 (558)
T ss_pred HHHHHhcCCeEEEEe--ccCCCCCHHHHHHHHcCCCHH
Confidence 444444499998876 889899888887777777643
No 254
>PRK13660 hypothetical protein; Provisional
Probab=21.37 E-value=3.2e+02 Score=21.38 Aligned_cols=65 Identities=20% Similarity=0.123 Sum_probs=36.8
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHC--CCeEEE-eC-CCCCCCCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKES--GSILSY-DP-NLRLPLWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~--g~~v~~-D~-~~~~~~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
-++.+||.++|-........+.+.++ |+. .+++++ -| .....-|.. ..++.+..++..+|.+..-
T Consensus 40 e~G~~wfi~ggalG~d~wAaEvvl~L----K~~yp~lkL~~~~PF~~q~~~W~e--~~q~~y~~i~~~aD~v~~v 108 (182)
T PRK13660 40 EEGLEWVIISGQLGVELWAAEVVLEL----KEEYPDLKLAVITPFEEHGENWNE--ANQEKLANILKQADFVKSI 108 (182)
T ss_pred HCCCCEEEECCcchHHHHHHHHHHHH----HhhCCCeEEEEEeCccchhhcCCH--HHHHHHHHHHHhCCEEEEe
Confidence 36689999988544443333333333 332 444432 22 222233653 3467778888999988863
No 255
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=21.16 E-value=1.7e+02 Score=26.70 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCceeEEEee----CCC-HHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGKL----GDD-EFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~v----G~D-~~g~~i~~~L~~~gI~~~ 105 (248)
|.-+|..++++|.+|+++..- +-| ...+.+++.|++.||++.
T Consensus 192 G~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 192 ALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred HHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEE
Confidence 455788899999999998751 112 367888999999999854
No 256
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=21.09 E-value=2.6e+02 Score=24.90 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhh-hCCEEEeCHHH
Q 025807 176 AAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWD-QADIIKVKFET 225 (248)
Q Consensus 176 ~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~-~~dil~~N~~E 225 (248)
++++.|+++|+++++|.++-... +-...+.+.++ .+|++..+-+-
T Consensus 178 ~l~~ia~~~~lpvivD~aSg~~v-----~~e~~l~~~la~GaDLV~~SgdK 223 (395)
T COG1921 178 ELVEIAHEKGLPVIVDLASGALV-----DKEPDLREALALGADLVSFSGDK 223 (395)
T ss_pred HHHHHHHHcCCCEEEecCCcccc-----ccccchhHHHhcCCCEEEEecch
Confidence 67888999999999999863210 01223455555 59998865443
No 257
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=21.08 E-value=4.1e+02 Score=22.43 Aligned_cols=66 Identities=8% Similarity=0.046 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHH---Hhh----------hhCCEEEeCHHHHHHhHHHHHH
Q 025807 169 PCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIM---SIW----------DQADIIKVKFETRYSCIQKMLL 235 (248)
Q Consensus 169 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~---~~l----------~~~dil~~N~~E~~~l~g~~~~ 235 (248)
...+.++++++.|+++|+.|+-..... ......+. ++. ...+.+.++..+...++...+.
T Consensus 69 yT~~di~elv~yA~~rgI~viPEiD~P-------GH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~ 141 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPEIDMP-------GHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFG 141 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccch-------HHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHH
Confidence 355777899999999999988666421 11111111 111 1134667777788888887777
Q ss_pred HHHhhc
Q 025807 236 HWYRYS 241 (248)
Q Consensus 236 ~~~~~~ 241 (248)
|+...+
T Consensus 142 e~~~lf 147 (303)
T cd02742 142 EIAELF 147 (303)
T ss_pred HHHHhC
Confidence 776654
No 258
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=21.05 E-value=2.5e+02 Score=25.07 Aligned_cols=66 Identities=5% Similarity=-0.007 Sum_probs=36.9
Q ss_pred hcCccEEEEcccccccchhHHHHHHHHHHHHHCCC---eEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHH
Q 025807 152 IKQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGS---ILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFET 225 (248)
Q Consensus 152 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~---~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E 225 (248)
.+++|++.++..+... .......++++++++.+. +|++- ++.... ..+.+..-++++|+++.++++
T Consensus 34 ~~~aD~v~intC~v~~-~a~~~~~~~i~~~~~~~~~~~~vvvg-Gc~a~~------~~ee~~~~~~~vd~vvg~~~~ 102 (429)
T TIGR00089 34 PEEADVIIINTCAVRE-KAEQKVRSRLGELAKLKKKNAKIVVA-GCLAQR------EGEELLKRIPEVDIVLGPQNK 102 (429)
T ss_pred cccCCEEEEecceeec-hHHHHHHHHHHHHHHhCcCCCEEEEE-Cccccc------CHHHHHhhCCCCCEEECCCCH
Confidence 3468899887654443 333445566677776665 44442 222111 133333445789988877643
No 259
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=21.03 E-value=4.2e+02 Score=23.59 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=37.0
Q ss_pred cCccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 153 KQGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 153 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
.++|++.+-+ +...+.+...++.+++.|+.+.+|.-.. ++ . .+.+.++...+|++.+-
T Consensus 249 aGAD~vTVH~-----ea~~~ti~~ai~~akk~GikvgVD~lnp---~t-p---~e~i~~l~~~vD~Vllh 306 (391)
T PRK13307 249 ATADAVVISG-----LAPISTIEKAIHEAQKTGIYSILDMLNV---ED-P---VKLLESLKVKPDVVELH 306 (391)
T ss_pred cCCCEEEEec-----cCCHHHHHHHHHHHHHcCCEEEEEEcCC---CC-H---HHHHHHhhCCCCEEEEc
Confidence 3567775443 2344567889999999999999985332 11 1 34455556677877553
No 260
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=4.4e+02 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHHHHCCC-eEEEeC
Q 025807 167 AEPCRSTQLAAMNLAKESGS-ILSYDP 192 (248)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~g~-~v~~D~ 192 (248)
.....+....+++...+.++ +|++|.
T Consensus 133 ~g~lrep~a~~Ie~iN~~~~pivAVDi 159 (203)
T COG0062 133 SGPLREPFASLIEAINASGKPIVAVDI 159 (203)
T ss_pred CCCCccHHHHHHHHHHhcCCceEEEeC
Confidence 33445666778888887777 577888
No 261
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=20.84 E-value=1.1e+02 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEeC
Q 025807 171 RSTQLAAMNLAKESGSILSYDP 192 (248)
Q Consensus 171 ~~~~~~~~~~a~~~g~~v~~D~ 192 (248)
.+.++.+++.|+++|++|++|.
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4667899999999999999998
No 262
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=20.80 E-value=1.7e+02 Score=26.29 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCceeEEEeeC-----CC-HHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGKLG-----DD-EFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~vG-----~D-~~g~~i~~~L~~~gI~~~ 105 (248)
|.-+|..++++|.+|+++..-. -| ...+.+.+.|++.||++.
T Consensus 178 G~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 178 AVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence 5677888999999999886421 12 366788899999999854
No 263
>PF04252 RNA_Me_trans: Predicted SAM-dependent RNA methyltransferase; InterPro: IPR007364 This family of proteins are predicted to be alpha/beta-knot SAM-dependent RNA methyltransferases [].
Probab=20.73 E-value=1.4e+02 Score=23.78 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=28.0
Q ss_pred CCceEEEecCCCcccccCcccchHhhhcCccEEEEcccccccchhHHHHHHHHH
Q 025807 126 GEREFLFFRHPSADMLLCESELDKNLIKQGSIFHYGSISLIAEPCRSTQLAAMN 179 (248)
Q Consensus 126 g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~ 179 (248)
.++.++.. +.|...+++++. +..++|.++|+.. +..+..-..++.+
T Consensus 62 ~~~VcLLD--P~A~~~L~PeD~-----~~fd~fvfGGILG-D~PPrdRT~eLr~ 107 (196)
T PF04252_consen 62 KSRVCLLD--PAAEKELSPEDG-----EKFDYFVFGGILG-DHPPRDRTSELRT 107 (196)
T ss_pred cCCEEEeC--CCCCCCCCcccc-----CcccEEEECcccC-CCCCCCchHHHHh
Confidence 45555544 666666666644 4799999999843 3334444445544
No 264
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.71 E-value=3.8e+02 Score=20.29 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCC
Q 025807 172 STQLAAMNLAKESGSILSYDPNL 194 (248)
Q Consensus 172 ~~~~~~~~~a~~~g~~v~~D~~~ 194 (248)
..+.++++.++++|++++.=.+.
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECC
Confidence 44567888899999887765543
No 265
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=20.70 E-value=1.7e+02 Score=26.24 Aligned_cols=43 Identities=16% Similarity=0.347 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHcCCceeEEEeeC-----CC-HHHHHHHHHHHHCCCCcc
Q 025807 63 APANVAVGISRLGGSSAFVGKLG-----DD-EFGYMLANILKENNVDTS 105 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG-----~D-~~g~~i~~~L~~~gI~~~ 105 (248)
.|.-+|..++++|.+|+++..-. .| ...+.+.+.|++.||+..
T Consensus 177 ~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 177 IGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEE
Confidence 35678889999999999987532 12 366788889999999853
No 266
>PRK03670 competence damage-inducible protein A; Provisional
Probab=20.65 E-value=3.4e+02 Score=22.43 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCceeEEEeeCCCHHHHHHHHHHHH
Q 025807 63 APANVAVGISRLGGSSAFVGKLGDDEFGYMLANILKE 99 (248)
Q Consensus 63 ~a~N~a~ala~lG~~v~l~~~vG~D~~g~~i~~~L~~ 99 (248)
++...+..|..+|.++..+..|++|+ +.|.+.+++
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd~--~~I~~~l~~ 55 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDDV--EEIKSVVLE 55 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCCH--HHHHHHHHH
Confidence 45667788889999999999999995 345566554
No 267
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=20.62 E-value=4.9e+02 Score=23.23 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=44.0
Q ss_pred CccEEEEcccccccchhHHHHHHHHHHHHHCCCeEEEe-CCCCCCCCCCHHHHHHHHHHhhhh-CCEEEe-----CHHHH
Q 025807 154 QGSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILSYD-PNLRLPLWPSEEAAREGIMSIWDQ-ADIIKV-----KFETR 226 (248)
Q Consensus 154 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~~w~~~~~~~~~~~~~l~~-~dil~~-----N~~E~ 226 (248)
..+.+.++|- -.......+.++++.+++.|+.+.+. .+.. .++ + .+.+.+++++ +|.+.+ |.+-.
T Consensus 73 ~~ggVtisGG--Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~-~l~-~----~e~~~~L~~~gld~v~iSvka~dpe~h 144 (404)
T TIGR03278 73 RDTKVTISGG--GDVSCYPELEELTKGLSDLGLPIHLGYTSGK-GFD-D----PEIAEFLIDNGVREVSFTVFATDPELR 144 (404)
T ss_pred CCCEEEEECC--cccccCHHHHHHHHHHHhCCCCEEEeCCCCc-ccC-C----HHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 3467777663 22334567789999999999998887 5421 111 1 3456667675 777654 45555
Q ss_pred HHhHH
Q 025807 227 YSCIQ 231 (248)
Q Consensus 227 ~~l~g 231 (248)
..++|
T Consensus 145 ~kl~G 149 (404)
T TIGR03278 145 REWMK 149 (404)
T ss_pred HHHhC
Confidence 66665
No 268
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=20.59 E-value=2.2e+02 Score=26.00 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHCCCeEEEeCCCCCC----------CCCCHHHHHHHHHHhhhhCCEEEeC
Q 025807 170 CRSTQLAAMNLAKESGSILSYDPNLRLP----------LWPSEEAAREGIMSIWDQADIIKVK 222 (248)
Q Consensus 170 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~----------~w~~~~~~~~~~~~~l~~~dil~~N 222 (248)
+.+.+.++.+.|+++|+++..|...... .+.+ ...++.+.++..++|.+.++
T Consensus 196 s~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~-~~i~ei~~e~~s~aD~~t~S 257 (460)
T PRK13237 196 SMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQD-KSIKEIVHEMFSYADGCTMS 257 (460)
T ss_pred CHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCC-CcHhHHhhhccCcCcEEEEe
Confidence 3566788889999999999999953322 0111 12345677888999998865
No 269
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.40 E-value=3.2e+02 Score=19.19 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEe
Q 025807 172 STQLAAMNLAKESGSILSYDPNLRLPLWPSEEAAREGIMSIWDQADIIKV 221 (248)
Q Consensus 172 ~~~~~~~~~a~~~g~~v~~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~ 221 (248)
....++++.++++|++++.=.+... .++.+.+|+.+.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~-------------s~la~~ad~~l~ 97 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPN-------------STLAKLSDVVLD 97 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCC-------------CchhhhCCEEEE
Confidence 4456888999999988776554321 224466887664
No 270
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.35 E-value=3.8e+02 Score=22.23 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=32.2
Q ss_pred ccEEEEcccccccchhHHHHHHHHHHHHHCCCeEE--EeCCCCCCCCCCHHHHHHHHHHhhhhCCEEEeCHHHH
Q 025807 155 GSIFHYGSISLIAEPCRSTQLAAMNLAKESGSILS--YDPNLRLPLWPSEEAAREGIMSIWDQADIIKVKFETR 226 (248)
Q Consensus 155 ~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~--~D~~~~~~~w~~~~~~~~~~~~~l~~~dil~~N~~E~ 226 (248)
.|++++... ..-...+..|++-|++|+ +|.++.+ ..+|+++|-.+.+
T Consensus 157 Pd~l~ViDp--------~~e~iAv~EA~klgIPVvAlvDTn~dp-----------------d~VD~~IP~Ndda 205 (252)
T COG0052 157 PDVLFVIDP--------RKEKIAVKEANKLGIPVVALVDTNCDP-----------------DGVDYVIPGNDDA 205 (252)
T ss_pred CCEEEEeCC--------cHhHHHHHHHHHcCCCEEEEecCCCCC-----------------ccCceeecCCChH
Confidence 677765432 222467888999999987 7887643 3589999854443
No 271
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=20.26 E-value=89 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCceeEEEe
Q 025807 64 PANVAVGISRLGGSSAFVGK 83 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~ 83 (248)
+.|+|.+|++.|.+|.++-.
T Consensus 18 a~~lA~aLa~~G~kVg~lD~ 37 (261)
T PF09140_consen 18 AVNLAVALARMGKKVGLLDL 37 (261)
T ss_dssp HHHHHHHHHCTT--EEEEE-
T ss_pred HHHHHHHHHHCCCeEEEEec
Confidence 68999999999999877765
No 272
>PRK14727 putative mercuric reductase; Provisional
Probab=20.17 E-value=1.6e+02 Score=26.61 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCceeEEEee---C-CC-HHHHHHHHHHHHCCCCcc
Q 025807 64 PANVAVGISRLGGSSAFVGKL---G-DD-EFGYMLANILKENNVDTS 105 (248)
Q Consensus 64 a~N~a~ala~lG~~v~l~~~v---G-~D-~~g~~i~~~L~~~gI~~~ 105 (248)
+.-+|..++++|.+|.++..- . -| ..++.+.+.|++.||++.
T Consensus 200 G~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 200 AAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred HHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEE
Confidence 456677888999999999651 1 13 367888899999999853
Done!