Query 025808
Match_columns 247
No_of_seqs 167 out of 977
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 4.3E-73 9.2E-78 497.1 27.5 243 4-247 5-247 (247)
2 PLN00193 expansin-A; Provision 100.0 2.1E-64 4.5E-69 444.3 25.6 211 21-246 26-256 (256)
3 PLN00050 expansin A; Provision 100.0 1.1E-63 2.3E-68 438.1 24.8 209 22-246 22-247 (247)
4 PLN03024 Putative EG45-like do 100.0 6.6E-30 1.4E-34 203.7 13.4 118 1-138 1-125 (125)
5 COG4305 Endoglucanase C-termin 100.0 6.6E-28 1.4E-32 198.8 19.0 198 20-247 25-231 (232)
6 PLN00115 pollen allergen group 99.9 2.6E-25 5.7E-30 175.2 11.2 92 146-246 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 1.6E-23 3.4E-28 156.0 9.9 80 148-231 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 1.2E-22 2.6E-27 152.7 6.5 70 60-136 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 1.6E-19 3.5E-24 132.8 7.0 70 60-136 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 4.1E-10 8.9E-15 87.5 4.2 63 70-141 57-119 (119)
11 PF07249 Cerato-platanin: Cera 98.4 2.6E-06 5.7E-11 67.4 8.6 69 58-140 43-113 (119)
12 TIGR00413 rlpA rare lipoprotei 98.0 8E-05 1.7E-09 64.1 10.8 95 28-144 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.8 0.00017 3.7E-09 63.2 9.8 67 58-142 109-178 (233)
14 PRK10672 rare lipoprotein A; P 97.5 0.0013 2.9E-08 61.1 11.0 91 27-139 80-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 91.6 0.19 4.1E-06 43.3 3.4 52 60-112 70-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 90.0 0.49 1.1E-05 38.0 4.3 50 171-220 38-104 (131)
17 cd02110 SO_family_Moco_dimer S 85.5 1.6 3.4E-05 40.2 5.3 50 171-220 234-291 (317)
18 cd02113 bact_SoxC_Moco bacteri 73.1 6.9 0.00015 36.3 5.2 50 171-220 236-292 (326)
19 cd02114 bact_SorA_Moco sulfite 72.9 8.5 0.00018 36.3 5.8 50 171-220 286-343 (367)
20 PLN00177 sulfite oxidase; Prov 70.9 8.1 0.00018 36.8 5.2 51 170-220 293-360 (393)
21 cd02111 eukary_SO_Moco molybdo 62.8 16 0.00035 34.4 5.4 51 170-220 273-337 (365)
22 PF12863 DUF3821: Domain of un 60.6 89 0.0019 27.2 9.2 95 104-224 47-144 (209)
23 cd02112 eukary_NR_Moco molybdo 54.1 26 0.00057 33.3 5.3 48 173-220 300-362 (386)
24 TIGR02588 conserved hypothetic 51.5 70 0.0015 25.5 6.5 24 158-182 49-72 (122)
25 PLN02252 nitrate reductase [NA 42.0 57 0.0012 34.4 6.0 53 168-220 367-434 (888)
26 PF04149 DUF397: Domain of unk 34.9 94 0.002 21.1 4.3 37 74-118 15-51 (56)
27 PRK13159 cytochrome c-type bio 34.3 66 0.0014 26.7 4.1 30 209-238 72-101 (155)
28 KOG1779 40s ribosomal protein 33.5 48 0.001 24.5 2.8 26 71-104 35-60 (84)
29 COG2372 CopC Uncharacterized p 31.4 74 0.0016 25.6 3.8 28 126-154 96-126 (127)
30 PF13719 zinc_ribbon_5: zinc-r 31.0 48 0.001 20.5 2.2 17 99-115 4-20 (37)
31 PF10417 1-cysPrx_C: C-termina 28.1 34 0.00073 21.7 1.1 11 228-238 10-20 (40)
32 PF04620 FlaA: Flagellar filam 27.5 1.6E+02 0.0034 25.8 5.6 44 146-192 108-151 (217)
33 KOG4192 Uncharacterized conser 26.5 3.4E+02 0.0074 21.8 7.5 75 105-193 43-124 (134)
34 PF02903 Alpha-amylase_N: Alph 25.3 3.1E+02 0.0067 20.9 6.6 54 172-227 31-97 (120)
35 PRK10301 hypothetical protein; 25.0 1.1E+02 0.0024 24.1 3.9 26 127-153 96-124 (124)
36 PF03100 CcmE: CcmE; InterPro 24.9 1.2E+02 0.0025 24.1 4.0 31 209-239 71-101 (131)
37 PHA02732 hypothetical protein; 23.2 8.7E+02 0.019 25.8 10.4 87 128-219 160-264 (1467)
38 PRK13150 cytochrome c-type bio 22.8 1.4E+02 0.0029 25.0 4.0 31 209-239 78-108 (159)
39 PRK13165 cytochrome c-type bio 22.3 1.4E+02 0.003 24.9 4.1 31 209-239 78-108 (160)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=4.3e-73 Score=497.11 Aligned_cols=243 Identities=74% Similarity=1.297 Sum_probs=224.9
Q ss_pred hhhHHHHHHHHhhhcccCCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECC
Q 025808 4 YQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKV 83 (247)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~ 83 (247)
+.+++|+++++++..+.|+ +|.+++|||||++++.|+++|||||+++..+.++.++||+|+||++|++||+||||+|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~ 83 (247)
T PLN03023 5 HYCCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKA 83 (247)
T ss_pred hhHHHHHHHHHhhhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCC
Confidence 3456666777777766555 599999999999999999999999999887778899999999999999999999999999
Q ss_pred CCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEE
Q 025808 84 PQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLA 163 (247)
Q Consensus 84 ~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a 163 (247)
+++|.+++|+|+|||.||+++.|||||..||.+||.|++.+++++.|+|+|+||||||.++|++|+|+|+++|.+|+||+
T Consensus 84 ~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~ 163 (247)
T PLN03023 84 PNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLA 163 (247)
T ss_pred CCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEE
Confidence 88999999999999999999999999999999999998888888999999999999999999999999999995599999
Q ss_pred EEEEEecCccceeEEEEEecCCcceEEcccccCceeccCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCCCCcEEecC
Q 025808 164 IAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESE 243 (247)
Q Consensus 164 ~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y~t~ 243 (247)
++|.|++|.++|++|||+++++..|++|+|+||++|+.+.+++|||+|||+++.++|+++++++||||++|++|++|+++
T Consensus 164 vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~ 243 (247)
T PLN03023 164 IVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSN 243 (247)
T ss_pred EEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecc
Confidence 99999999999999999987788999999999999999999999999999999877745589999999999999999999
Q ss_pred CCCC
Q 025808 244 IQLK 247 (247)
Q Consensus 244 ~qf~ 247 (247)
+||.
T Consensus 244 vq~~ 247 (247)
T PLN03023 244 IQLD 247 (247)
T ss_pred cccC
Confidence 9995
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.1e-64 Score=444.27 Aligned_cols=211 Identities=28% Similarity=0.576 Sum_probs=189.7
Q ss_pred CCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEEC---CCCcccCC-cEEEE
Q 025808 21 SHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCK---VPQLCTDY-GVYVV 95 (247)
Q Consensus 21 ~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~---~~~~C~~~-sv~V~ 95 (247)
..++|++++|||||.+|+.|+++|||||+++...+++.++||+| +||++|++||+||||+|. +++.|.++ +|+|+
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence 35589999999999999989999999999988788899999999 999999999999999994 56689765 89999
Q ss_pred EeeCCCC-----------C---CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcE
Q 025808 96 VTDYGEG-----------D---KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHY 161 (247)
Q Consensus 96 VtD~Cp~-----------~---~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w 161 (247)
|||+||. | +.|||||+.||.+||. ++.|+|+|+||||+|.++| ||+|+|++ ++||
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~ 174 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTING---RDYF 174 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEcC---CccE
Confidence 9999996 3 4799999999999994 5799999999999999999 99999984 6899
Q ss_pred EEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccCCCCCC-CeeEEEEEEecCCCEEEEEecccCCCCCCCcEE
Q 025808 162 LAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG-AISLRFQVSGSAGLTWVVANNAIPSDWKAGVAY 240 (247)
Q Consensus 162 ~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~g-p~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y 240 (247)
++++|.|++|.++|++|||++++ .+|++|+|+||++|+.+.++.+ ||+|| ||+.+| +++++.||||++|++|++|
T Consensus 175 ~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfR--vts~~G-~~~~~~~viPa~W~~G~ty 250 (256)
T PLN00193 175 ELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFK--VTTTDG-QTRFFLNVVPANWGFGQTF 250 (256)
T ss_pred EEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEE--EEEcCC-eEEEECceeCCCCCCCCeE
Confidence 99999999999999999999754 5899999999999999877666 65555 555567 8999999999999999999
Q ss_pred ecCCCC
Q 025808 241 ESEIQL 246 (247)
Q Consensus 241 ~t~~qf 246 (247)
++++||
T Consensus 251 ~s~vqf 256 (256)
T PLN00193 251 SSSVQF 256 (256)
T ss_pred ecCccC
Confidence 999998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.1e-63 Score=438.14 Aligned_cols=209 Identities=33% Similarity=0.616 Sum_probs=188.3
Q ss_pred CCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEEEECCC-CcccCCcEEEEEeeC
Q 025808 22 HYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQVRCKVP-QLCTDYGVYVVVTDY 99 (247)
Q Consensus 22 ~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~-~~C~~~sv~V~VtD~ 99 (247)
..+|..++|||||.+++.|+++|||||+++..++++.++||+| +||++|++||+||||+|.+. .+|.+++|+|+|||+
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~ 101 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNF 101 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecC
Confidence 4579999999999999999999999999988788899999999 99999999999999999654 479989999999999
Q ss_pred CCC--------------CCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEEEE
Q 025808 100 GEG--------------DKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIA 165 (247)
Q Consensus 100 Cp~--------------~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a~~ 165 (247)
||. ++.|||||++||.+||. ++.|+|+|+||||||.++| ||+|+|+++ +||++++
T Consensus 102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~---sy~~~vl 170 (247)
T PLN00050 102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH---SYFNLVL 170 (247)
T ss_pred CCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC---ceeEEEE
Confidence 996 34899999999999994 5799999999999999999 999999874 4999999
Q ss_pred EEEecCccceeEEEEEecCCcceEEcccccCceeccCCCCCC-CeeEEEEEEecCCCEEEEEecccCCCCCCCcEEecCC
Q 025808 166 ILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEG-AISLRFQVSGSAGLTWVVANNAIPSDWKAGVAYESEI 244 (247)
Q Consensus 166 v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~g-p~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~y~t~~ 244 (247)
|.|++|.++|++|||++++ .+|++|+|+||++|+.+.++.+ ||+||| |+.+| +++++.||||++|++|++|++.
T Consensus 171 v~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRv--t~~~G-~~~~~~~V~Pa~W~~G~ty~~~- 245 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKV--TTSDG-RTVISNNAAPSNWAFGQTYTGM- 245 (247)
T ss_pred EEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEE--EecCC-cEEEECceeCCCCCCCCeEecC-
Confidence 9999999999999999753 5799999999999998876666 666555 45567 8999999999999999999995
Q ss_pred CC
Q 025808 245 QL 246 (247)
Q Consensus 245 qf 246 (247)
||
T Consensus 246 ~f 247 (247)
T PLN00050 246 QF 247 (247)
T ss_pred cC
Confidence 88
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.97 E-value=6.6e-30 Score=203.72 Aligned_cols=118 Identities=31% Similarity=0.502 Sum_probs=96.4
Q ss_pred CCchhhHHHHHHHHhhhcccCCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCCCCCCceEEE
Q 025808 1 MGLYQYYLLSVMLLLPALCYSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNGTGCGACYQV 79 (247)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V 79 (247)
|.|.-|+++.+++++.+.. ....|+||||++. ..|||+ ++ .+++.++||+| ++|++|+.||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~----~~~~G~AT~Y~~~-----~~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V 67 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVS----YATPGIATFYTSY-----TPSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTV 67 (125)
T ss_pred CceeeHHHHHHHHHHhhhh----cccceEEEEeCCC-----CCcccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEE
Confidence 6665566666655555444 3345999999975 368994 43 24688999999 999999999999999
Q ss_pred EECCC-----CcccCCcEEEEEeeCCC-CCCCceeeCHHHHhcccCCCcccccccCcEEEEEEEE
Q 025808 80 RCKVP-----QLCTDYGVYVVVTDYGE-GDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRR 138 (247)
Q Consensus 80 ~c~~~-----~~C~~~sv~V~VtD~Cp-~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~ 138 (247)
+|.++ ..|++++|+|+|+|+|| +|..|||||++||++||++ +.|+++|+|.+
T Consensus 68 ~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~-------~aG~v~V~y~~ 125 (125)
T PLN03024 68 KCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIANP-------VAGIINIDYIP 125 (125)
T ss_pred EECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCc-------cCCEEEEEEeC
Confidence 99765 37999999999999999 6889999999999999965 68999999964
No 5
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.6e-28 Score=198.83 Aligned_cols=198 Identities=21% Similarity=0.280 Sum_probs=158.0
Q ss_pred cCCCCceeeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEec-hhccCC----CCCCceEEEEECCCCcccCCcEEE
Q 025808 20 YSHYTSTYSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVS-RLWKNG----TGCGACYQVRCKVPQLCTDYGVYV 94 (247)
Q Consensus 20 ~~~~~~~~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g----~~CG~C~~V~c~~~~~C~~~sv~V 94 (247)
.+-+..+.|-|||-+... .+||--. ++.+..+.+.|+| +.-+-| +.-|+.++|. +| +++.+|
T Consensus 25 ~awd~~f~G~ATyTgsGY----sGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTV 91 (232)
T COG4305 25 AAWDDLFEGYATYTGSGY----SGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTV 91 (232)
T ss_pred cccccccceeEEEecccc----cCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEE
Confidence 334566899999977653 5677643 4445567899999 666544 6799999998 55 678899
Q ss_pred EEeeCCCCC-CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEEEEEEEecCcc
Q 025808 95 VVTDYGEGD-KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQN 173 (247)
Q Consensus 95 ~VtD~Cp~~-~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a~~v~n~~g~~ 173 (247)
.|||..|+. .+.+|||+.||.+|+ .+.+|+|+|+||.|+-|.+| |+.+++|||| +.||-++||+|| +.
T Consensus 92 YVTDlYPegasGaLDLSpNAFakIG-------nm~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVRnH--~y 160 (232)
T COG4305 92 YVTDLYPEGASGALDLSPNAFAKIG-------NMKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVRNH--KY 160 (232)
T ss_pred EEecccccccccccccChHHHhhhc-------chhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeeecc--cC
Confidence 999999986 589999999999999 46899999999999999999 9999999999 899999999999 99
Q ss_pred ceeEEEEEecCCcceEEcccccCceeccCCCCCCCeeEEEEEEecCCCEEEEEe-cccCCCCCCCcEEe--cCCCCC
Q 025808 174 DVLAVEIWQEDYQEWVAMRRAFGAVFDISSPPEGAISLRFQVSGSAGLTWVVAN-NAIPSDWKAGVAYE--SEIQLK 247 (247)
Q Consensus 174 ~I~sVev~~~~~~~W~~m~r~~g~~W~~~~~~~gp~~lr~~vt~~~g~~~iv~~-~vip~~w~~g~~y~--t~~qf~ 247 (247)
+|.++|+.+ .+.|..|.+.+||+|...+...+|+ .+|.|++.| +.++-. -.+|.. ...+.|. ++|||+
T Consensus 161 PV~KlE~~q--dg~WinlpK~dYNhFVgT~LG~~pL--~~RmTDIRG-~~l~DtlP~Lpk~-asSKaY~V~G~VQFs 231 (232)
T COG4305 161 PVMKLEYEQ--DGKWINLPKMDYNHFVGTNLGTGPL--KVRMTDIRG-KVLKDTLPKLPKS-ASSKAYTVPGHVQFS 231 (232)
T ss_pred ceEEEEEec--CCeEeeccccccceeeccccCCCce--EEEEeeccc-ceeeccccccccc-ccCCceeecceeecC
Confidence 999999985 4789999999999998877777885 455678888 555433 233433 2234454 678885
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.93 E-value=2.6e-25 Score=175.22 Aligned_cols=92 Identities=28% Similarity=0.545 Sum_probs=81.9
Q ss_pred cceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceE-EcccccCceeccC--CCCCCCeeEEEEEEecCCCE
Q 025808 146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWV-AMRRAFGAVFDIS--SPPEGAISLRFQVSGSAGLT 222 (247)
Q Consensus 146 ~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~-~m~r~~g~~W~~~--~~~~gp~~lr~~vt~~~g~~ 222 (247)
++|+|+|+++| |++||+|++ | ++|.+|||++.++..|+ +|+|+||++|+.+ .|++|||++||+++ +| +
T Consensus 24 ~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~~--~G-~ 94 (118)
T PLN00115 24 TEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLVK--GG-G 94 (118)
T ss_pred CceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEEe--CC-C
Confidence 59999999999 899998765 4 47999999998888999 9999999999954 47899988888764 45 7
Q ss_pred EEEEecccCCCCCCCcEEecCCCC
Q 025808 223 WVVANNAIPSDWKAGVAYESEIQL 246 (247)
Q Consensus 223 ~iv~~~vip~~w~~g~~y~t~~qf 246 (247)
+++++||||++|++|++|++++||
T Consensus 95 ~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 95 YRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred EEEECceECCCCCCCCEEeccccC
Confidence 899999999999999999999998
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=1.6e-23 Score=155.96 Aligned_cols=80 Identities=41% Similarity=0.770 Sum_probs=66.0
Q ss_pred eEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcccccCceeccC-CCCCCCeeEEEEEEecC-CCEEEE
Q 025808 148 LQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMRRAFGAVFDIS-SPPEGAISLRFQVSGSA-GLTWVV 225 (247)
Q Consensus 148 i~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~r~~g~~W~~~-~~~~gp~~lr~~vt~~~-g~~~iv 225 (247)
|+|+|+++| ++|||+++|.|++|.++|++|||++.++.+|++|+|+||++|+.+ +++++||+||| |+.+ | ++++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rv--ts~~~G-~~vv 76 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRV--TSGDSG-QTVV 76 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEE--EETTTS-EEEE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEE--EEcCCC-eEEE
Confidence 689999999 999999999999999999999999999999999999999999986 88899977766 5555 6 9999
Q ss_pred EecccC
Q 025808 226 ANNAIP 231 (247)
Q Consensus 226 ~~~vip 231 (247)
++||||
T Consensus 77 ~~nViP 82 (82)
T PF01357_consen 77 ADNVIP 82 (82)
T ss_dssp EEEEE-
T ss_pred EecccC
Confidence 999998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.87 E-value=1.2e-22 Score=152.67 Aligned_cols=70 Identities=34% Similarity=0.752 Sum_probs=62.2
Q ss_pred EEEec-hhccCCCCCCceEEEEEC-CCCcccC-CcEEEEEeeCCCCC--------------CCceeeCHHHHhcccCCCc
Q 025808 60 VAGVS-RLWKNGTGCGACYQVRCK-VPQLCTD-YGVYVVVTDYGEGD--------------KTDFILSPRAYGRMALPDK 122 (247)
Q Consensus 60 ~aA~s-~~~~~g~~CG~C~~V~c~-~~~~C~~-~sv~V~VtD~Cp~~--------------~~~~DLS~~AF~~ia~~~~ 122 (247)
+||+| +||++|++||+||||+|. +++.|.+ ++|+|+|||+||.+ +.|||||.+||.+||.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 48999 999999999999999996 5667976 48999999999962 5799999999999995
Q ss_pred ccccccCcEEEEEE
Q 025808 123 SAELYSYGVVNVEF 136 (247)
Q Consensus 123 ~~~~~~~G~v~I~~ 136 (247)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 4799999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.79 E-value=1.6e-19 Score=132.75 Aligned_cols=70 Identities=40% Similarity=0.652 Sum_probs=58.6
Q ss_pred EEEec-hhccCCCCCCceEEEEEC--CCCc--ccC--CcEEEEEeeCCCCCC-CceeeCHHHHhcccCCCcccccccCcE
Q 025808 60 VAGVS-RLWKNGTGCGACYQVRCK--VPQL--CTD--YGVYVVVTDYGEGDK-TDFILSPRAYGRMALPDKSAELYSYGV 131 (247)
Q Consensus 60 ~aA~s-~~~~~g~~CG~C~~V~c~--~~~~--C~~--~sv~V~VtD~Cp~~~-~~~DLS~~AF~~ia~~~~~~~~~~~G~ 131 (247)
+||++ .+|++|.+||+||+++|. .+.. |.. ++|+|+|+|+||+|. .|||||+.||++|+.+ +.|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~~-------~~G~ 73 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALADP-------DAGV 73 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBST-------TCSS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCCC-------CceE
Confidence 58999 999999999999999993 2323 776 999999999999975 8999999999999954 7999
Q ss_pred EEEEE
Q 025808 132 VNVEF 136 (247)
Q Consensus 132 v~I~~ 136 (247)
++|+|
T Consensus 74 i~V~w 78 (78)
T PF03330_consen 74 IPVEW 78 (78)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.99 E-value=4.1e-10 Score=87.48 Aligned_cols=63 Identities=24% Similarity=0.461 Sum_probs=45.8
Q ss_pred CCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEee
Q 025808 70 GTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPC 141 (247)
Q Consensus 70 g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C 141 (247)
-..||+|++|+.+. ++.+++|+|+|+|+.+ +|||.+.+|.+|...+. ....|.+.|+|++|+|
T Consensus 57 q~~CGkClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG~---G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 57 QDSCGKCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDGQ---GYAQGHLIVDYEFVDC 119 (119)
T ss_dssp GGGTT-EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSSH---HHHHTEEEEEEEEE--
T ss_pred cccccceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCCc---ccccceEEEEEEEEcC
Confidence 36899999999654 3679999999999966 99999999999975432 3468999999999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.36 E-value=2.6e-06 Score=67.45 Aligned_cols=69 Identities=22% Similarity=0.496 Sum_probs=49.2
Q ss_pred ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhcccCCCcccccccCcEEEEE
Q 025808 58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMALPDKSAELYSYGVVNVE 135 (247)
Q Consensus 58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~ 135 (247)
-.|.+.. +-| |...||.|+|++-. +++|.|..+|.=+ ..|+|+.+||+.|.+.. ....|+|+++
T Consensus 43 p~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~---~gfnis~~A~n~LT~g~----a~~lG~V~a~ 108 (119)
T PF07249_consen 43 PYIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAG---GGFNISLDAMNDLTNGQ----AVELGRVDAT 108 (119)
T ss_dssp TSEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-----CCCC-EEE-E
T ss_pred CeeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCC---CcccchHHHHHHhcCCc----ccceeEEEEE
Confidence 4577776 667 45799999999962 5799999999854 46999999999998642 2357999999
Q ss_pred EEEEe
Q 025808 136 FRRVP 140 (247)
Q Consensus 136 ~r~V~ 140 (247)
|++|+
T Consensus 109 ~~qV~ 113 (119)
T PF07249_consen 109 YTQVD 113 (119)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 99996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.99 E-value=8e-05 Score=64.14 Aligned_cols=95 Identities=24% Similarity=0.181 Sum_probs=68.8
Q ss_pred eEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCC-CCc
Q 025808 28 SRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGD-KTD 106 (247)
Q Consensus 28 g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~-~~~ 106 (247)
|.|+|||..-. | ..-|.|-. ++ ...++||-..| ..|...+|+... ++++|+|+|.|++|-- ..-
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~-y~---~~~~tAAHktL-----PlgT~V~VtNl~----ngrsviVrVnDRGPf~~gRi 65 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEV-YN---MKALTAAHKTL-----PFNTYVKVTNLH----NNRSVIVRINDRGPFSDDRI 65 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCee-cC---CCccccccccC-----CCCCEEEEEECC----CCCEEEEEEeCCCCCCCCCE
Confidence 67999997421 1 23444421 11 12355555433 569999999765 3789999999999974 468
Q ss_pred eeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCC
Q 025808 107 FILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYK 144 (247)
Q Consensus 107 ~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~ 144 (247)
+|||+.|+.+|+ ....|+.+|+.+.+.....
T Consensus 66 IDLS~aAA~~Lg-------~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 66 IDLSHAAAREIG-------LISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred EECCHHHHHHcC-------CCcCceEEEEEEEEecCCC
Confidence 999999999999 4579999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=0.00017 Score=63.15 Aligned_cols=67 Identities=21% Similarity=0.096 Sum_probs=55.0
Q ss_pred ceEEEec--hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCC-CCceeeCHHHHhcccCCCcccccccCcEEEE
Q 025808 58 ANVAGVS--RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGD-KTDFILSPRAYGRMALPDKSAELYSYGVVNV 134 (247)
Q Consensus 58 ~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~-~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I 134 (247)
.++||-- +| |.-.+|+..++ +++|+|+|.|++|-- ...+|||..|+++|+. ...|+.+|
T Consensus 109 ~~tAAH~TLP~-------~t~v~VtNl~N----grsvvVRINDRGPf~~gRiIDlS~aAA~~l~~-------~~~G~a~V 170 (233)
T COG0797 109 ALTAAHKTLPL-------PTYVRVTNLDN----GRSVVVRINDRGPFVSGRIIDLSKAAADKLGM-------IRSGVAKV 170 (233)
T ss_pred ccccccccCCC-------CCEEEEEEccC----CcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCC-------ccCceEEE
Confidence 3466655 44 77889997663 789999999999974 4689999999999994 57999999
Q ss_pred EEEEEeeC
Q 025808 135 EFRRVPCW 142 (247)
Q Consensus 135 ~~r~V~C~ 142 (247)
+.+.+.+.
T Consensus 171 ~i~~l~~~ 178 (233)
T COG0797 171 RIEVLGVA 178 (233)
T ss_pred EEEEeccc
Confidence 99999866
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.46 E-value=0.0013 Score=61.12 Aligned_cols=91 Identities=19% Similarity=0.091 Sum_probs=61.3
Q ss_pred eeEEEEECCCCCCCCCCcccCCCCCCCCCCCceEEEechhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCCC-CC
Q 025808 27 YSRATYYGSPDSLGTPTGACGFGEYGRTVNDANVAGVSRLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGD-KT 105 (247)
Q Consensus 27 ~g~aT~Y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~-~~ 105 (247)
.|.|+|||.... | ..-|.|-- ++ ...++||-..| --|...+|+.... +++|+|+|.|++|-- ..
T Consensus 80 ~G~ASwYg~~f~-G-~~TA~Ge~-~~---~~~~tAAH~tL-----Plps~vrVtNl~n----grsvvVrVnDRGP~~~gR 144 (361)
T PRK10672 80 AGLAAIYDAEAG-S-NLTASGER-FD---PNALTAAHPTL-----PIPSYVRVTNLAN----GRMIVVRINDRGPYGPGR 144 (361)
T ss_pred EEEEEEeCCccC-C-CcCcCcee-ec---CCcCeeeccCC-----CCCCEEEEEECCC----CcEEEEEEeCCCCCCCCC
Confidence 688888886421 1 11222211 01 12356665522 3489999997663 789999999999974 46
Q ss_pred ceeeCHHHHhcccCCCcccccccCcEEEEEEEEE
Q 025808 106 DFILSPRAYGRMALPDKSAELYSYGVVNVEFRRV 139 (247)
Q Consensus 106 ~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V 139 (247)
-+|||..|+++|+. ...+.|.|+.-.|
T Consensus 145 iiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 145 VIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred eeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 89999999999994 3457788877766
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=91.63 E-value=0.19 Score=43.30 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=31.6
Q ss_pred EEEec-hhccCCCCCCceEEEEECCCCcccCCcEEEEEeeCCCC-CCCceeeCHH
Q 025808 60 VAGVS-RLWKNGTGCGACYQVRCKVPQLCTDYGVYVVVTDYGEG-DKTDFILSPR 112 (247)
Q Consensus 60 ~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~-~~~~~DLS~~ 112 (247)
+||.+ .=..+...|++|||++=++. .-.+|+.+|+|++.--. ..+||||...
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g-~l~GKkmiVQ~tNtG~dlg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSG-PLKGKKMIVQVTNTGGDLGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SS-TTTT-EEEEEEEEE-TTTTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCC-CcCCCEeEEEecccCCCCCCCeEEEEeC
Confidence 55555 43333468999999997652 12467899999998654 4589997543
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=90.00 E-value=0.49 Score=38.03 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=33.4
Q ss_pred Ccc-ceeEEEEEecCCcceEEcccccCc-------------eeccC--CC-CCCCeeEEEEEEecCC
Q 025808 171 GQN-DVLAVEIWQEDYQEWVAMRRAFGA-------------VFDIS--SP-PEGAISLRFQVSGSAG 220 (247)
Q Consensus 171 g~~-~I~sVev~~~~~~~W~~m~r~~g~-------------~W~~~--~~-~~gp~~lr~~vt~~~g 220 (247)
|.+ +|++|||+.+++.+|++.+..... .|+.. -+ ++|...|.+|-++.+|
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G 104 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESG 104 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccc
Confidence 345 899999999999999976643211 35432 22 2578888888888777
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=85.55 E-value=1.6 Score=40.23 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=36.4
Q ss_pred CccceeEEEEEecCCcceEEcccccC----c---eeccC-CCCCCCeeEEEEEEecCC
Q 025808 171 GQNDVLAVEIWQEDYQEWVAMRRAFG----A---VFDIS-SPPEGAISLRFQVSGSAG 220 (247)
Q Consensus 171 g~~~I~sVev~~~~~~~W~~m~r~~g----~---~W~~~-~~~~gp~~lr~~vt~~~g 220 (247)
|...|++|||+.+++.+|++..-... - .|+.. .+.+|...|.+|.++..|
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g 291 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTG 291 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCC
Confidence 34679999999999899997654321 1 44443 334788899999998877
No 18
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=73.09 E-value=6.9 Score=36.28 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=34.2
Q ss_pred CccceeEEEEEecCCcceEEcccc--c-Ccee---ccC-CCCCCCeeEEEEEEecCC
Q 025808 171 GQNDVLAVEIWQEDYQEWVAMRRA--F-GAVF---DIS-SPPEGAISLRFQVSGSAG 220 (247)
Q Consensus 171 g~~~I~sVev~~~~~~~W~~m~r~--~-g~~W---~~~-~~~~gp~~lr~~vt~~~g 220 (247)
|.++|+.|||+.+++.+|+..+-. . ...| ... .+..++..|..|-++..|
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G 292 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETG 292 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCC
Confidence 456799999999999999976542 1 1122 222 234577888888888777
No 19
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=72.87 E-value=8.5 Score=36.27 Aligned_cols=50 Identities=14% Similarity=0.401 Sum_probs=35.8
Q ss_pred CccceeEEEEEecCCcceEEccc--ccCc----eeccC-CC-CCCCeeEEEEEEecCC
Q 025808 171 GQNDVLAVEIWQEDYQEWVAMRR--AFGA----VFDIS-SP-PEGAISLRFQVSGSAG 220 (247)
Q Consensus 171 g~~~I~sVev~~~~~~~W~~m~r--~~g~----~W~~~-~~-~~gp~~lr~~vt~~~g 220 (247)
|...|++|||+.+++.+|+..+- ..+. .|+.. .+ ..|.+.|.+|.++..|
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G 343 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDG 343 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCC
Confidence 44689999999999999997542 2222 35543 22 3688999999998877
No 20
>PLN00177 sulfite oxidase; Provisional
Probab=70.94 E-value=8.1 Score=36.78 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=34.6
Q ss_pred cCccceeEEEEEecCCcceEEcccc---------------cCc--eeccCCCCCCCeeEEEEEEecCC
Q 025808 170 AGQNDVLAVEIWQEDYQEWVAMRRA---------------FGA--VFDISSPPEGAISLRFQVSGSAG 220 (247)
Q Consensus 170 ~g~~~I~sVev~~~~~~~W~~m~r~---------------~g~--~W~~~~~~~gp~~lr~~vt~~~g 220 (247)
||..+|+.|||+.+++.+|+..+.. .++ .|...-..+|...|..|-++..|
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G 360 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAA 360 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCC
Confidence 3444799999999999999976431 111 23333235578888888888777
No 21
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=62.81 E-value=16 Score=34.40 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=34.3
Q ss_pred cCccceeEEEEEecCCcceEEccccc--C-------cee---ccC-CCCC-CCeeEEEEEEecCC
Q 025808 170 AGQNDVLAVEIWQEDYQEWVAMRRAF--G-------AVF---DIS-SPPE-GAISLRFQVSGSAG 220 (247)
Q Consensus 170 ~g~~~I~sVev~~~~~~~W~~m~r~~--g-------~~W---~~~-~~~~-gp~~lr~~vt~~~g 220 (247)
||...|++|||+.+++.+|+...-.. + -.| ... .+.+ +.+.|..|.++..|
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G 337 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAY 337 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCC
Confidence 44458999999999999999765321 1 233 333 1223 57888888888776
No 22
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=60.58 E-value=89 Score=27.22 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=51.7
Q ss_pred CCceeeCHHHHhcccCCCcccccccCcEEEEEEEEEeeCCCCcceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEec
Q 025808 104 KTDFILSPRAYGRMALPDKSAELYSYGVVNVEFRRVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQE 183 (247)
Q Consensus 104 ~~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r~V~C~~~g~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~ 183 (247)
+.+|.++|.+|..=. | .|..-+=...+ .+.|.|++.| ++|.|.+..-..+|..-.|..+
T Consensus 47 p~~FyV~P~~f~~~t-----------G----~WY~~~~~~~~-~~aF~V~~Ps-----l~l~v~d~~t~~dvt~~~V~~G 105 (209)
T PF12863_consen 47 PTNFYVSPAAFGGKT-----------G----NWYQWNGTPKG-DVAFYVQDPS-----LSLKVWDANTDKDVTGKTVPRG 105 (209)
T ss_pred CcCEEEChHHhCCcc-----------c----ceEecCCCCCc-ceEEEEeCCc-----eEEEEEeccccccccCceeccC
Confidence 689999999997533 2 24443333334 8999999865 6788876643455554444432
Q ss_pred CCcceEEcccccCceecc---CCCCCCCeeEEEEEEecCCCEEE
Q 025808 184 DYQEWVAMRRAFGAVFDI---SSPPEGAISLRFQVSGSAGLTWV 224 (247)
Q Consensus 184 ~~~~W~~m~r~~g~~W~~---~~~~~gp~~lr~~vt~~~g~~~i 224 (247)
.--.++- +.|.+.. .+....+..++|+|++-+| .+.
T Consensus 106 ~~v~FrI----~tNL~~~~~R~g~~~~~~~v~I~V~~P~G-~~~ 144 (209)
T PF12863_consen 106 DNVNFRI----DTNLYSIFQRGGYTPGDGPVDIKVTTPSG-ATY 144 (209)
T ss_pred CeEEEEE----cccHHHHhhcCCCCCCcceEEEEEeCCCC-cEE
Confidence 2222222 2333321 2222222236677777666 443
No 23
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=54.13 E-value=26 Score=33.26 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=33.5
Q ss_pred cceeEEEEEecCCcceEEcccc--c-----C--cee---ccCC--C-CCCCeeEEEEEEecCC
Q 025808 173 NDVLAVEIWQEDYQEWVAMRRA--F-----G--AVF---DISS--P-PEGAISLRFQVSGSAG 220 (247)
Q Consensus 173 ~~I~sVev~~~~~~~W~~m~r~--~-----g--~~W---~~~~--~-~~gp~~lr~~vt~~~g 220 (247)
.+|++|||+.+++.+|+..... . + -.| +..- + .+|.+.|..|-++..|
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G 362 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESM 362 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCC
Confidence 4799999999999999976432 1 1 134 3332 1 2588899999888777
No 24
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=51.49 E-value=70 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.0
Q ss_pred CCcEEEEEEEEecCccceeEEEEEe
Q 025808 158 YPHYLAIAILYVAGQNDVLAVEIWQ 182 (247)
Q Consensus 158 ~~~w~a~~v~n~~g~~~I~sVev~~ 182 (247)
-+||..|.|.|.|| ...++|+|..
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~g 72 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRG 72 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEE
Confidence 35999999999875 6789999974
No 25
>PLN02252 nitrate reductase [NADPH]
Probab=42.00 E-value=57 Score=34.43 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=35.9
Q ss_pred EecCccceeEEEEEecCCcceEEccccc-------Cc--ee---ccCC---CCCCCeeEEEEEEecCC
Q 025808 168 YVAGQNDVLAVEIWQEDYQEWVAMRRAF-------GA--VF---DISS---PPEGAISLRFQVSGSAG 220 (247)
Q Consensus 168 n~~g~~~I~sVev~~~~~~~W~~m~r~~-------g~--~W---~~~~---~~~gp~~lr~~vt~~~g 220 (247)
+.||...|+.|||..+++.+|+..+... |. .| ...- .+.|...|.+|-++..|
T Consensus 367 ~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g 434 (888)
T PLN02252 367 YSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESM 434 (888)
T ss_pred ECCCCCceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCC
Confidence 4445457999999999999999766532 11 24 3331 24577788888887665
No 26
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=34.91 E-value=94 Score=21.08 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=27.6
Q ss_pred CceEEEEECCCCcccCCcEEEEEeeCCCCCCCceeeCHHHHhccc
Q 025808 74 GACYQVRCKVPQLCTDYGVYVVVTDYGEGDKTDFILSPRAYGRMA 118 (247)
Q Consensus 74 G~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~~~~DLS~~AF~~ia 118 (247)
|.|+||.-. +. .|-|.|.=....+.|.+++.+|..+-
T Consensus 15 ~~CVEva~~------~~--~v~vRDSk~p~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 15 GNCVEVARL------PG--GVAVRDSKDPDGPVLTFTPAEWAAFL 51 (56)
T ss_pred CCcEEEEee------cc--eEEEecCCCCCCCEEEeCHHHHHHHH
Confidence 889999742 22 27888875446689999999998763
No 27
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=34.34 E-value=66 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=21.8
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCc
Q 025808 209 ISLRFQVSGSAGLTWVVANNAIPSDWKAGV 238 (247)
Q Consensus 209 ~~lr~~vt~~~g~~~iv~~~vip~~w~~g~ 238 (247)
+.++|++|+....-.|....++|+-|+.|+
T Consensus 72 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 72 LKVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred cEEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 468899998765334445689999888775
No 28
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=33.52 E-value=48 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=18.5
Q ss_pred CCCCceEEEEECCCCcccCCcEEEEEeeCCCCCC
Q 025808 71 TGCGACYQVRCKVPQLCTDYGVYVVVTDYGEGDK 104 (247)
Q Consensus 71 ~~CG~C~~V~c~~~~~C~~~sv~V~VtD~Cp~~~ 104 (247)
..|+.|++|++.- ..+.+|+| |++|.
T Consensus 35 VkC~gc~~iT~vf-----SHaqtvVv---c~~c~ 60 (84)
T KOG1779|consen 35 VKCPGCFKITTVF-----SHAQTVVV---CEGCS 60 (84)
T ss_pred EEcCCceEEEEEe-----ecCceEEE---cCCCc
Confidence 4799999999854 34555665 77764
No 29
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=31.43 E-value=74 Score=25.59 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.0
Q ss_pred cccCcEEEEEEEEEeeC---CCCcceEEEEec
Q 025808 126 LYSYGVVNVEFRRVPCW---YKGYNLQFKVHE 154 (247)
Q Consensus 126 ~~~~G~v~I~~r~V~C~---~~g~ni~~~v~~ 154 (247)
.+..|...++||.|+=+ .+| .+.|.|++
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G-~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKG-SISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEecc-EEEEEecC
Confidence 57899999999999986 367 88888764
No 30
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=30.99 E-value=48 Score=20.46 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=14.1
Q ss_pred CCCCCCCceeeCHHHHh
Q 025808 99 YGEGDKTDFILSPRAYG 115 (247)
Q Consensus 99 ~Cp~~~~~~DLS~~AF~ 115 (247)
+||.|...|.|+.+...
T Consensus 4 ~CP~C~~~f~v~~~~l~ 20 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLP 20 (37)
T ss_pred ECCCCCceEEcCHHHcc
Confidence 59999999999887654
No 31
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=28.08 E-value=34 Score=21.65 Aligned_cols=11 Identities=45% Similarity=0.966 Sum_probs=9.2
Q ss_pred cccCCCCCCCc
Q 025808 228 NAIPSDWKAGV 238 (247)
Q Consensus 228 ~vip~~w~~g~ 238 (247)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 47899999886
No 32
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=27.45 E-value=1.6e+02 Score=25.78 Aligned_cols=44 Identities=16% Similarity=0.431 Sum_probs=31.8
Q ss_pred cceEEEEecCCCCCcEEEEEEEEecCccceeEEEEEecCCcceEEcc
Q 025808 146 YNLQFKVHENSRYPHYLAIAILYVAGQNDVLAVEIWQEDYQEWVAMR 192 (247)
Q Consensus 146 ~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~sVev~~~~~~~W~~m~ 192 (247)
+.|.+.|-+-. ++++|.+++++. .+.+..+.+=.-+-..|+.|+
T Consensus 108 k~I~vWV~G~n-~~h~L~v~lrD~--~G~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 108 KSISVWVYGDN-YPHWLEVLLRDA--KGEVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEEECCC-CCceEEEEEEcC--CCCEEEEEeeeecCCceeEEE
Confidence 46777776544 899999999998 556666666333446799887
No 33
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=3.4e+02 Score=21.76 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=49.6
Q ss_pred CceeeCHHHHhcccCCCcccccccCcEEEEEEE-------EEeeCCCCcceEEEEecCCCCCcEEEEEEEEecCccceeE
Q 025808 105 TDFILSPRAYGRMALPDKSAELYSYGVVNVEFR-------RVPCWYKGYNLQFKVHENSRYPHYLAIAILYVAGQNDVLA 177 (247)
Q Consensus 105 ~~~DLS~~AF~~ia~~~~~~~~~~~G~v~I~~r-------~V~C~~~g~ni~~~v~~gS~~~~w~a~~v~n~~g~~~I~s 177 (247)
-||.+...-|..|-.. ....+|+ -+.|..-| =-.|.. .-| +||=.++.+.=.. .+.+++
T Consensus 43 ~hfivpas~f~ll~g~----------efitty~~gth~aqhtfck~cG-V~sf~~-~rs-~p~~~~i~phCld-~gTlr~ 108 (134)
T KOG4192|consen 43 RHFIVPASRFVLLVGA----------EFITTYTFGTHQAQHTFCKRCG-VQSFYS-PRS-NPYGKGIAPHCLD-EGTLRS 108 (134)
T ss_pred eEEEEeccceEEEeCc----------ceEEEEEeccchhheeeecccc-ceeccc-ccc-CCCceeecceeec-CCceeE
Confidence 5999998888887621 2333443 35676655 122332 234 8888888887654 378999
Q ss_pred EEEEecCCcceEEccc
Q 025808 178 VEIWQEDYQEWVAMRR 193 (247)
Q Consensus 178 Vev~~~~~~~W~~m~r 193 (247)
|++.+-++++|..+..
T Consensus 109 v~~~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 109 VVWEEFNGQDWEATME 124 (134)
T ss_pred EEEEEecCcchhHhhh
Confidence 9999888888986554
No 34
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=25.25 E-value=3.1e+02 Score=20.90 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=32.5
Q ss_pred ccceeEEEEEecCCcce--------EEccccc----CceeccC-CCCCCCeeEEEEEEecCCCEEEEEe
Q 025808 172 QNDVLAVEIWQEDYQEW--------VAMRRAF----GAVFDIS-SPPEGAISLRFQVSGSAGLTWVVAN 227 (247)
Q Consensus 172 ~~~I~sVev~~~~~~~W--------~~m~r~~----g~~W~~~-~~~~gp~~lr~~vt~~~g~~~iv~~ 227 (247)
+++|++|.|.-.....| ++|++.. -.+|+.. .++...+.-.|.+++ +| +++...
T Consensus 31 k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~-~~-~~~~y~ 97 (120)
T PF02903_consen 31 KNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED-GG-ETYYYG 97 (120)
T ss_dssp TTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE-TT-EEEEEE
T ss_pred CCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe-CC-EEEEEe
Confidence 56788888865444444 5676532 2488754 223345788888887 55 677654
No 35
>PRK10301 hypothetical protein; Provisional
Probab=24.98 E-value=1.1e+02 Score=24.09 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=19.8
Q ss_pred ccCcEEEEEEEEEeeC---CCCcceEEEEe
Q 025808 127 YSYGVVNVEFRRVPCW---YKGYNLQFKVH 153 (247)
Q Consensus 127 ~~~G~v~I~~r~V~C~---~~g~ni~~~v~ 153 (247)
+..|.+.|+||-|+=+ ..| .+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 5689999999999965 256 6666654
No 36
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=24.88 E-value=1.2e+02 Score=24.12 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=17.4
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025808 209 ISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 239 (247)
Q Consensus 209 ~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~ 239 (247)
..++|.+++....-.|+...+.|++|+.|..
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 3788999887653345556899999887654
No 37
>PHA02732 hypothetical protein; Provisional
Probab=23.21 E-value=8.7e+02 Score=25.82 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=51.2
Q ss_pred cCcEEEEEEEEEeeCCCCcceEEEEec---CCCCCcEEEEEEE--Eec------CccceeEEEEEecCCcce-EEccccc
Q 025808 128 SYGVVNVEFRRVPCWYKGYNLQFKVHE---NSRYPHYLAIAIL--YVA------GQNDVLAVEIWQEDYQEW-VAMRRAF 195 (247)
Q Consensus 128 ~~G~v~I~~r~V~C~~~g~ni~~~v~~---gS~~~~w~a~~v~--n~~------g~~~I~sVev~~~~~~~W-~~m~r~~ 195 (247)
..|-.-|-||++|-...= |+.+|+.. +-+|||-=.++|. |++ +..+...+.|.--++.-| +.+...
T Consensus 160 ~~~GQYIAW~f~P~s~T~-NVTIHitS~Ps~~~npysPGIvIYspN~g~q~~Di~~SgF~ALlVtFyng~IWyH~ps~g- 237 (1467)
T PHA02732 160 PAGGQYIAWRFTPPSNTF-NVTIHITSWPSGIGNPYSPGIAIYSPNVGDQPTDIGASGFLALLVDFYNGGIFYHEPNGG- 237 (1467)
T ss_pred CCCccEEEEEEcCCCceE-EEEEEEEeccCCCCCCCCCceEEECCCCCCCccccccCceEEEEEEecCCcEEEECCCCC-
Confidence 345567899999987776 89998874 3336665566665 443 223445566654345566 444433
Q ss_pred Ccee-cc----CCC-CCCCeeEEEEEEecC
Q 025808 196 GAVF-DI----SSP-PEGAISLRFQVSGSA 219 (247)
Q Consensus 196 g~~W-~~----~~~-~~gp~~lr~~vt~~~ 219 (247)
| ++ +.| +.-||.+.+..|+++
T Consensus 238 ---w~~L~~slP~Ps~~YPFtfTVifTeNs 264 (1467)
T PHA02732 238 ---WTELSGSLPQPNPAYPFTFTVIFTENS 264 (1467)
T ss_pred ---ceEEEEcCCCCCCCCCEEEEEEEEecC
Confidence 4 22 222 234777777777744
No 38
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.78 E-value=1.4e+02 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=21.2
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025808 209 ISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 239 (247)
Q Consensus 209 ~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~ 239 (247)
+.++|++|+....-.|+...++|+.|+.|+-
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 4688888887652244446799988887653
No 39
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.35 E-value=1.4e+02 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=20.4
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCCCCcE
Q 025808 209 ISLRFQVSGSAGLTWVVANNAIPSDWKAGVA 239 (247)
Q Consensus 209 ~~lr~~vt~~~g~~~iv~~~vip~~w~~g~~ 239 (247)
+.++|++|+....-.|+...++|+.|+.|+-
T Consensus 78 l~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (160)
T PRK13165 78 LKVSFTLYDAGGSVTVTYEGILPDLFREGQG 108 (160)
T ss_pred eEEEEEEEcCCeEEEEEEcccCCccccCCCe
Confidence 4678888876542233445789988887653
Done!