BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025809
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 34/240 (14%)

Query: 21  YAGGWSSAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTSTAALSTALFNNGVTCGACF 78
           Y G W +A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+
Sbjct: 15  YNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCY 74

Query: 79  EIKCVNDNRWCL--PGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH- 135
           E++C  +   C   P ++ +T  N+ P     P            HFDLS   F  +A  
Sbjct: 75  EVRC-KEKPECSGNPVTVYITDMNYEP---IAP-----------YHFDLSGKAFGSLAKP 119

Query: 136 ------YKAGIVPVQYRRVACRKSGGIRFTINGHSYFN----LVLITNVGGAGDVVSVSI 185
                    GI+ V++RRV C+   G +   +     N     VL+  V   GD+V + I
Sbjct: 120 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 179

Query: 186 KGSRTG-WQPMSRNWGQNWQSNS--YLNGQALSFQVTTSDGRSVISINVAPPNWSFGRTY 242
           +   +  W+PM  +WG  W+ ++   L G   S ++T+  G+ VI+ +V P NW     Y
Sbjct: 180 QDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVY 238


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 34/243 (13%)

Query: 21  YAGGWSSAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTSTAALSTALFNNGVTCGACF 78
           Y   W  A +T+Y                Y ++    +   T   +T +F +G  CG+CF
Sbjct: 15  YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCF 74

Query: 79  EIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQ--HFDLSQPIFQHIAHY 136
           EIKC      C    ++V         H   +N       P+   HFDLS   F  +A  
Sbjct: 75  EIKCTKPEA-CSGEPVVV---------HITDDN-----EEPIAPYHFDLSGHAFGAMAKK 119

Query: 137 -------KAGIVPVQYRRVACRKSGGIRFTINGHSYFN----LVLITNVGGAGDVVSVSI 185
                   AG + +Q+RRV C+   G + T +     N     +L+  V G GDVV+V I
Sbjct: 120 GDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDI 179

Query: 186 KGS-RTGWQPMSRNWGQNWQSNS--YLNGQALSFQVTTSDGRSVISINVAPPNWSFGRTY 242
           K   +  W  +  +WG  W+ ++   L G   + + TT  G    + +V P  W    +Y
Sbjct: 180 KEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSY 238

Query: 243 NGR 245
             +
Sbjct: 239 ESK 241


>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
           Spectrin
          Length = 214

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 21/103 (20%)

Query: 150 CRKSGGIRFTINGH--SYFNLVLITN--VGGAGD----VVSVSIKGSRTGWQPMSRNWGQ 201
            ++  GI+  I+GH  SY  +       + G  D    ++   ++G  TGW  +    G+
Sbjct: 39  LQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDAL----GR 94

Query: 202 NWQSNSYLNGQALSFQVTTSDGRSVISI---------NVAPPN 235
            W+S S+   Q L FQ    D +   +I         ++ PP+
Sbjct: 95  MWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPD 137


>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
          Length = 751

 Score = 26.9 bits (58), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 152 KSGGIRFTINGHSYFNLVLITNVGGA-GDVVSVSIKGSRTGW 192
           +  G+R+ +  H   +LV++TN GGA    + ++ +G  + W
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,613,624
Number of Sequences: 62578
Number of extensions: 300856
Number of successful extensions: 598
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 5
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)