Query 025809
Match_columns 247
No_of_seqs 143 out of 1021
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00050 expansin A; Provision 100.0 1.4E-72 3E-77 497.3 27.0 247 1-247 1-247 (247)
2 PLN00193 expansin-A; Provision 100.0 2.3E-70 4.9E-75 485.1 28.5 244 4-247 8-256 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 3.6E-62 7.8E-67 430.8 25.4 210 21-247 21-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 6.2E-28 1.3E-32 200.8 20.0 181 26-237 31-218 (232)
5 PLN03024 Putative EG45-like do 99.9 5.7E-27 1.2E-31 188.1 12.7 99 27-147 23-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 8.4E-27 1.8E-31 176.4 8.0 86 60-145 1-87 (87)
7 PLN00115 pollen allergen group 99.9 2.7E-23 5.9E-28 165.0 11.0 87 155-247 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 3.6E-22 7.8E-27 149.6 9.7 77 156-233 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 4E-19 8.6E-24 131.4 6.4 73 60-145 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 2.2E-10 4.7E-15 89.8 3.5 60 70-150 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 2.3E-05 4.9E-10 62.6 8.3 66 59-149 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.8 0.00016 3.6E-09 62.7 10.2 96 28-153 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.3 0.00086 1.9E-08 59.2 7.1 60 74-151 119-178 (233)
14 PRK10672 rare lipoprotein A; P 97.1 0.0064 1.4E-07 57.0 11.1 91 27-149 80-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 91.2 0.21 4.6E-06 43.3 3.3 54 60-128 70-123 (201)
16 cd02854 Glycogen_branching_enz 75.6 6.1 0.00013 30.2 4.7 48 180-227 16-76 (99)
17 PRK10564 maltose regulon perip 65.3 25 0.00054 32.6 7.0 76 143-247 48-127 (303)
18 PF03404 Mo-co_dimer: Mo-co ox 55.9 19 0.00041 29.0 4.1 23 176-198 38-62 (131)
19 cd02110 SO_family_Moco_dimer S 53.4 27 0.0006 32.2 5.3 47 178-224 236-292 (317)
20 cd02861 E_set_proteins_like E 41.7 58 0.0013 23.4 4.5 45 181-226 14-60 (82)
21 TIGR02588 conserved hypothetic 38.6 2.1E+02 0.0045 23.0 8.0 33 155-188 35-73 (122)
22 cd02859 AMPKbeta_GBD_like AMP- 36.8 1.2E+02 0.0026 21.8 5.5 56 169-229 4-62 (79)
23 cd02855 Glycogen_branching_enz 35.3 1.3E+02 0.0028 22.1 5.7 34 193-226 49-85 (106)
24 PF10417 1-cysPrx_C: C-termina 34.9 22 0.00047 22.7 1.1 11 230-240 10-20 (40)
25 PLN00177 sulfite oxidase; Prov 29.9 1.3E+02 0.0029 28.7 6.0 25 173-197 291-316 (393)
26 cd02111 eukary_SO_Moco molybdo 28.4 1.6E+02 0.0034 27.9 6.1 25 173-197 271-296 (365)
27 cd02113 bact_SoxC_Moco bacteri 26.5 1.4E+02 0.003 27.9 5.3 49 176-224 236-293 (326)
28 PF07172 GRP: Glycine rich pro 24.5 53 0.0012 25.1 1.8 18 3-20 8-25 (95)
29 PF15240 Pro-rich: Proline-ric 24.5 49 0.0011 28.4 1.8 14 4-17 2-16 (179)
30 TIGR02747 TraV type IV conjuga 24.0 56 0.0012 27.0 2.0 23 3-26 5-27 (144)
31 PF08770 SoxZ: Sulphur oxidati 23.8 1.5E+02 0.0033 22.6 4.3 17 213-229 81-97 (100)
32 PF02922 CBM_48: Carbohydrate- 23.2 1.8E+02 0.0039 20.5 4.4 48 180-227 22-79 (85)
33 PRK13701 psiB plasmid SOS inhi 22.3 2.4E+02 0.0052 23.2 5.3 44 139-186 58-105 (144)
34 PRK10301 hypothetical protein; 22.1 1E+02 0.0022 24.5 3.1 26 136-161 96-124 (124)
35 cd02114 bact_SorA_Moco sulfite 21.7 2.3E+02 0.0049 26.9 5.8 49 176-224 286-344 (367)
36 cd02860 Pullulanase_N_term Pul 21.2 3.4E+02 0.0074 20.0 5.8 33 193-225 39-73 (100)
37 PF12863 DUF3821: Domain of un 20.3 5.6E+02 0.012 22.4 7.6 87 121-228 48-146 (209)
No 1
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.4e-72 Score=497.30 Aligned_cols=247 Identities=83% Similarity=1.456 Sum_probs=235.2
Q ss_pred CchHHHHHHHHHHHhhhcccCCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEE
Q 025809 1 MDFLGIFLVASLSMLRTIHGYAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEI 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV 80 (247)
|+-|+--+|+||+.+--..+++.+|..++|||||++++.|+++|||||+++..++++.++||+|+++|++|++||+||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV 80 (247)
T PLN00050 1 MECLGYTIVALLSILKIVEGYGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEI 80 (247)
T ss_pred CcchhhhHHHHhhhheeccccCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEE
Confidence 78899999999999888888888999999999999999999999999999888889999999999999999999999999
Q ss_pred EEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEeeeecCCceeEEE
Q 025809 81 KCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTI 160 (247)
Q Consensus 81 ~c~~~~~~C~~~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v 160 (247)
+|.+++.+|.+++|+|+|||+||++++.|+.+++||++++.|||||+.||.+||....|+|+|+||||||.++|||+|++
T Consensus 81 ~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v 160 (247)
T PLN00050 81 KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI 160 (247)
T ss_pred EcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence 99876668998999999999999998889899999998899999999999999999999999999999999999999999
Q ss_pred cCccceeEEEEEeecCCcceEEEEEEccCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCeEEEEccccCCCCCCCe
Q 025809 161 NGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFGR 240 (247)
Q Consensus 161 ~~~~yw~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~gn~W~~~~~l~g~p~~vRvTs~~G~~vv~~~vip~~w~~g~ 240 (247)
++++||++|+|.|++|+++|++|||++++++|++|+|+||++|+++.+|.+.||+||||+.+|+++++.||||++||+|.
T Consensus 161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ 240 (247)
T PLN00050 161 NGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQ 240 (247)
T ss_pred cCCceeEEEEEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCC
Confidence 99889999999999999999999999987789999999999999988777779999999999999999999999999999
Q ss_pred EEeCCCC
Q 025809 241 TYNGRQF 247 (247)
Q Consensus 241 ~Y~~~~~ 247 (247)
+|++.||
T Consensus 241 ty~~~~f 247 (247)
T PLN00050 241 TYTGMQF 247 (247)
T ss_pred eEecCcC
Confidence 9999998
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.3e-70 Score=485.07 Aligned_cols=244 Identities=65% Similarity=1.266 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHhhhcccC-CCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEE
Q 025809 4 LGIFLVASLSMLRTIHGY-AGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKC 82 (247)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c 82 (247)
|+|||--+-++.-...++ +++|++++|||||++++.|+++|||||+++..++++.++||+|+++|++|++||+||||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C 87 (256)
T PLN00193 8 LAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMC 87 (256)
T ss_pred HHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEEC
Confidence 344444344444455556 5589999999999999989999999999988888999999999999999999999999999
Q ss_pred cC--CCCcccCC-eEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEeeeecCCceeEE
Q 025809 83 VN--DNRWCLPG-SIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFT 159 (247)
Q Consensus 83 ~~--~~~~C~~~-sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~ 159 (247)
.. ++..|.++ +|+|+|||+||+++++|.+|++||++++.|||||+.||.+||.+..|+++|+||||+|+++|||+|+
T Consensus 88 ~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~ 167 (256)
T PLN00193 88 DYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFT 167 (256)
T ss_pred CCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEE
Confidence 52 35689776 9999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred EcCccceeEEEEEeecCCcceEEEEEEccCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCeEEEEccccCCCCCCC
Q 025809 160 INGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISINVAPPNWSFG 239 (247)
Q Consensus 160 v~~~~yw~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~gn~W~~~~~l~g~p~~vRvTs~~G~~vv~~~vip~~w~~g 239 (247)
+++++||++|+|.|++|+++|++||||+++++|++|+|+||++|+++.+|.+.||+||||+.+|+++++.||||++|++|
T Consensus 168 v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G 247 (256)
T PLN00193 168 INGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFG 247 (256)
T ss_pred EcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCC
Confidence 99999999999999999999999999998778999999999999998888777999999999999999999999999999
Q ss_pred eEEeCC-CC
Q 025809 240 RTYNGR-QF 247 (247)
Q Consensus 240 ~~Y~~~-~~ 247 (247)
.+|++. ||
T Consensus 248 ~ty~s~vqf 256 (256)
T PLN00193 248 QTFSSSVQF 256 (256)
T ss_pred CeEecCccC
Confidence 999998 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=3.6e-62 Score=430.81 Aligned_cols=210 Identities=28% Similarity=0.628 Sum_probs=189.7
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCcccCCeEEEEEec
Q 025809 21 YAGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATN 100 (247)
Q Consensus 21 ~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~VtD 100 (247)
..++|++++|||||++++.|+.+|||||+++..+.++.++||++ ++|++|++||+||||+|.+ +..|.+++|+|+|||
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C~~~~v~V~iTd 98 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLCSDDGVNVVVTD 98 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCccCCCCeEEEEEe
Confidence 44469999999999999999999999999988777888999999 9999999999999999976 568999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc-------ccCcccceeEEEeeeecCC-ceeEEEc--C-ccceeEE
Q 025809 101 FCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH-------YKAGIVPVQYRRVACRKSG-GIRFTIN--G-HSYFNLV 169 (247)
Q Consensus 101 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g-ni~~~v~--~-~~yw~av 169 (247)
.||. ++.|||||..||.+||. +..|+|+|+||||||.++| +|+|+|+ + +++|++|
T Consensus 99 ~~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~v 164 (247)
T PLN03023 99 YGEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAI 164 (247)
T ss_pred CCCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEE
Confidence 9985 36899999999999998 4679999999999999999 9999998 3 3789999
Q ss_pred EEEeecCCcceEEEEEEccC-CceeecCCCCCceEEeCCCCCCcceEEEE--EecCCeE-EEEccccCCCCCCCeEEeCC
Q 025809 170 LITNVGGAGDVVSVSIKGSR-TGWQPMSRNWGQNWQSNSYLNGQALSFQV--TTSDGRS-VISINVAPPNWSFGRTYNGR 245 (247)
Q Consensus 170 ~v~n~~g~~~I~sVeI~~~g-~~W~~m~r~~gn~W~~~~~l~g~p~~vRv--Ts~~G~~-vv~~~vip~~w~~g~~Y~~~ 245 (247)
+|.|++|+++|++||||+++ .+|++|+|+||++|+++.+|+| ||+||+ |..+|++ |+++||||++||+|.+|+++
T Consensus 165 lv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~ 243 (247)
T PLN03023 165 VMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSN 243 (247)
T ss_pred EEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecc
Confidence 99999999999999999965 6899999999999999888987 555555 4556754 89999999999999999999
Q ss_pred -CC
Q 025809 246 -QF 247 (247)
Q Consensus 246 -~~ 247 (247)
||
T Consensus 244 vq~ 246 (247)
T PLN03023 244 IQL 246 (247)
T ss_pred ccc
Confidence 87
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.2e-28 Score=200.78 Aligned_cols=181 Identities=23% Similarity=0.340 Sum_probs=152.5
Q ss_pred eEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCC----CCCCceEEEEEcCCCCcccCCeEEEEEecC
Q 025809 26 SSAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNG----VTCGACFEIKCVNDNRWCLPGSIIVTATNF 101 (247)
Q Consensus 26 ~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~eV~c~~~~~~C~~~sv~v~VtD~ 101 (247)
++|.|||-+... ++||-... +.+-+..+.|+++.+-+-| +.-|+.++|.+ | +++.+|.|||+
T Consensus 31 f~G~ATyTgsGY----sGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---P----KG~TTVYVTDl 96 (232)
T COG4305 31 FEGYATYTGSGY----SGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---P----KGKTTVYVTDL 96 (232)
T ss_pred cceeEEEecccc----cCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC---C----CCceEEEEecc
Confidence 579999776443 47887654 3344567999999988854 68999999998 4 46899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEeeeecCCceeEEEc--CccceeEEEEEeecCCcc
Q 025809 102 CPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTIN--GHSYFNLVLITNVGGAGD 179 (247)
Q Consensus 102 Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~--~~~yw~av~v~n~~g~~~ 179 (247)
.|++ ..+.||||+.||.+|.+...|+|+|+||.|+-|..||+.+++| ++.||.++||+||. .|
T Consensus 97 YPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~--yP 161 (232)
T COG4305 97 YPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK--YP 161 (232)
T ss_pred cccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc--Cc
Confidence 9983 3689999999999999999999999999999999999999999 47999999999998 79
Q ss_pred eEEEEEEccCCceeecCCCCCceEEeCCCCCCcceEEEEEecCCeEEEEc-cccCCCCC
Q 025809 180 VVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISI-NVAPPNWS 237 (247)
Q Consensus 180 I~sVeI~~~g~~W~~m~r~~gn~W~~~~~l~g~p~~vRvTs~~G~~vv~~-~vip~~w~ 237 (247)
|.++|+.+. +.|+.|...++|+|...+ |...||.+|+|++.|+.++.. -.+|..-.
T Consensus 162 V~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~as 218 (232)
T COG4305 162 VMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSAS 218 (232)
T ss_pred eEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccccccc
Confidence 999999987 799999999999998644 544599999999999998864 35555433
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=5.7e-27 Score=188.13 Aligned_cols=99 Identities=35% Similarity=0.635 Sum_probs=85.0
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCC----CCcccCCeEEEEEecCC
Q 025809 27 SAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVND----NRWCLPGSIIVTATNFC 102 (247)
Q Consensus 27 ~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~----~~~C~~~sv~v~VtD~C 102 (247)
+|+||||++++ .|||+ +. .+++.++||+|+.+|++|+.||+||||+|.+. +..|.+++|+|+|+|+|
T Consensus 23 ~G~AT~Y~~~~-----~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~C 93 (125)
T PLN03024 23 PGIATFYTSYT-----PSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHC 93 (125)
T ss_pred ceEEEEeCCCC-----Ccccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCC
Confidence 49999999754 58994 43 34678999999999999999999999999653 24688889999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEE
Q 025809 103 PPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRR 147 (247)
Q Consensus 103 p~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~ 147 (247)
|+. |. .|||||++||.+||+++.|+++|+|.+
T Consensus 94 P~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 94 PSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 951 73 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=8.4e-27 Score=176.41 Aligned_cols=86 Identities=76% Similarity=1.427 Sum_probs=79.9
Q ss_pred EEEechhccCCCCCCCceEEEEEcCCCCcccCC-eEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccC
Q 025809 60 TAALSTALFNNGVTCGACFEIKCVNDNRWCLPG-SIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKA 138 (247)
Q Consensus 60 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~-sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~ 138 (247)
+||+|+.+|++|++||+||||+|.++|..|.++ +|+|+|||+||++++.|+.+++||.+++.|||||..||.+||.+..
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999999999997666789875 9999999999998888888899999889999999999999999999
Q ss_pred cccceeE
Q 025809 139 GIVPVQY 145 (247)
Q Consensus 139 G~v~i~~ 145 (247)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=2.7e-23 Score=165.00 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=78.8
Q ss_pred ceeEEEc--CccceeEEEEEeecCCcceEEEEEEccC-Ccee-ecCCCCCceEEeCC--CCCCcceEEEEEecCCeEEEE
Q 025809 155 GIRFTIN--GHSYFNLVLITNVGGAGDVVSVSIKGSR-TGWQ-PMSRNWGQNWQSNS--YLNGQALSFQVTTSDGRSVIS 228 (247)
Q Consensus 155 ni~~~v~--~~~yw~av~v~n~~g~~~I~sVeI~~~g-~~W~-~m~r~~gn~W~~~~--~l~g~p~~vRvTs~~G~~vv~ 228 (247)
+|+|+|+ ++++|+++++ | ++|.+|||++++ ..|+ +|+|+||+.|++++ ||+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 9999999 4699997766 3 469999999986 6899 99999999999754 7887 9999999999999999
Q ss_pred ccccCCCCCCCeEEeCC-CC
Q 025809 229 INVAPPNWSFGRTYNGR-QF 247 (247)
Q Consensus 229 ~~vip~~w~~g~~Y~~~-~~ 247 (247)
+||||++||+|.+|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999 87
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=3.6e-22 Score=149.57 Aligned_cols=77 Identities=45% Similarity=0.903 Sum_probs=64.1
Q ss_pred eeEEEc--CccceeEEEEEeecCCcceEEEEEEccC-CceeecCCCCCceEEeC-CCCCCcceEEEEEecC-CeEEEEcc
Q 025809 156 IRFTIN--GHSYFNLVLITNVGGAGDVVSVSIKGSR-TGWQPMSRNWGQNWQSN-SYLNGQALSFQVTTSD-GRSVISIN 230 (247)
Q Consensus 156 i~~~v~--~~~yw~av~v~n~~g~~~I~sVeI~~~g-~~W~~m~r~~gn~W~~~-~~l~g~p~~vRvTs~~-G~~vv~~~ 230 (247)
|+|+|+ +++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689999 3699999999999999999999999887 67999999999999998 56665 9999999977 99999999
Q ss_pred ccC
Q 025809 231 VAP 233 (247)
Q Consensus 231 vip 233 (247)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=4e-19 Score=131.36 Aligned_cols=73 Identities=37% Similarity=0.809 Sum_probs=61.0
Q ss_pred EEEechhccCCCCCCCceEEEEEcCC-CCc--ccC--CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhh
Q 025809 60 TAALSTALFNNGVTCGACFEIKCVND-NRW--CLP--GSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIA 134 (247)
Q Consensus 60 ~aA~s~~~~~~g~~CG~C~eV~c~~~-~~~--C~~--~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia 134 (247)
+||++..+|++|.+||+||+++|... ... |.. ++|+|+|+|+||+ |. ..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 58999999999999999999999321 122 776 8999999999998 74 699999999999999
Q ss_pred cccCcccceeE
Q 025809 135 HYKAGIVPVQY 145 (247)
Q Consensus 135 ~~~~G~v~i~~ 145 (247)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.01 E-value=2.2e-10 Score=89.84 Aligned_cols=60 Identities=25% Similarity=0.579 Sum_probs=44.2
Q ss_pred CCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc----ccCcccceeE
Q 025809 70 NGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH----YKAGIVPVQY 145 (247)
Q Consensus 70 ~g~~CG~C~eV~c~~~~~~C~~~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~v~i~~ 145 (247)
....||+|++||.+.. +.+++|+|+|+|+. ++|||.+.+|++|-. ...|.+.|.|
T Consensus 56 gq~~CGkClrVTNt~t-----ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y 114 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTAT-----GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDY 114 (119)
T ss_dssp SGGGTT-EEEEE-TTT-------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEEEE
T ss_pred CcccccceEEEEecCC-----CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEEEE
Confidence 3468999999998753 34999999999875 589999999999953 3568999999
Q ss_pred EEeee
Q 025809 146 RRVAC 150 (247)
Q Consensus 146 r~V~C 150 (247)
++|+|
T Consensus 115 ~fV~C 119 (119)
T PF00967_consen 115 EFVDC 119 (119)
T ss_dssp EEE--
T ss_pred EEEcC
Confidence 99999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.07 E-value=2.3e-05 Score=62.62 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=46.6
Q ss_pred eEEEech-hccCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhc--
Q 025809 59 STAALST-ALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAH-- 135 (247)
Q Consensus 59 ~~aA~s~-~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-- 135 (247)
.+.+... .-|+ +..||.|+|++-.+ .+|.|..+|.=+ ..|+|+.+||+.|.+
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty~g-------~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~ 98 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTYNG-------RSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQ 98 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEETT-------EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-
T ss_pred eeccccccccCC-CCCCCCeEEEEECC-------eEEEEEEEecCC-----------------CcccchHHHHHHhcCCc
Confidence 3555554 3465 47899999999843 599999999732 469999999999986
Q ss_pred -ccCcccceeEEEee
Q 025809 136 -YKAGIVPVQYRRVA 149 (247)
Q Consensus 136 -~~~G~v~i~~r~V~ 149 (247)
...|+|+++|++|+
T Consensus 99 a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 99 AVELGRVDATYTQVD 113 (119)
T ss_dssp CCCC-EEE-EEEEE-
T ss_pred ccceeEEEEEEEEcC
Confidence 35699999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.84 E-value=0.00016 Score=62.68 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=69.2
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCC
Q 025809 28 AHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHA 107 (247)
Q Consensus 28 g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~VtD~Cp~~~~ 107 (247)
|.|+|||..-. | ...|.|=.. + ...|+||-.. .-.|..++|+...+ +.+|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~y-~---~~~~tAAHkt------LPlgT~V~VtNl~n-----grsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEVY-N---MKALTAAHKT------LPFNTYVKVTNLHN-----NRSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCeec-C---CCcccccccc------CCCCCEEEEEECCC-----CCEEEEEEeCCCCCC--
Confidence 67999985311 1 124443211 1 1134555543 47889999998765 359999999999972
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEeeeecC
Q 025809 108 LPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKS 153 (247)
Q Consensus 108 ~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~ 153 (247)
+.--+|||..|+.+|.-...|+.+|+.+.+.....
T Consensus 62 -----------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 62 -----------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred -----------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 24689999999999999999999999999987653
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.00086 Score=59.21 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=51.6
Q ss_pred CCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEeeee
Q 025809 74 CGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVACR 151 (247)
Q Consensus 74 CG~C~eV~c~~~~~~C~~~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~ 151 (247)
=|.-.+||..++ +.+|+|+|.|++|- . ..-.||||..|+++|+-...|+.+|+.+++.+.
T Consensus 119 ~~t~v~VtNl~N-----grsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLDN-----GRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEccC-----CcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 457789998875 45999999999995 3 246899999999999999999999999999865
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.07 E-value=0.0064 Score=57.01 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCC--CeEEEechhccCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCC
Q 025809 27 SAHATFYGGGDASGTMGGACGYGNLYSQGYG--TSTAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPP 104 (247)
Q Consensus 27 ~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~--~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~VtD~Cp~ 104 (247)
.|.|+|||..-. | ...|.| ..|+ .|+||-.+ .--|..++||...+ +.+|+|+|.|++|-
T Consensus 80 ~G~ASwYg~~f~-G-~~TA~G------e~~~~~~~tAAH~t------LPlps~vrVtNl~n-----grsvvVrVnDRGP~ 140 (361)
T PRK10672 80 AGLAAIYDAEAG-S-NLTASG------ERFDPNALTAAHPT------LPIPSYVRVTNLAN-----GRMIVVRINDRGPY 140 (361)
T ss_pred EEEEEEeCCccC-C-CcCcCc------eeecCCcCeeeccC------CCCCCEEEEEECCC-----CcEEEEEEeCCCCC
Confidence 488888885321 0 012222 1122 34555543 35678999999875 46999999999997
Q ss_pred CCCCCCCCCCCCCCCCCceeeCHHHHHHhhcccCcccceeEEEee
Q 025809 105 NHALPNNAGGWCNPPLQHFDLSQPIFQHIAHYKAGIVPVQYRRVA 149 (247)
Q Consensus 105 ~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~ 149 (247)
. +.--+|||..|+.+|.-...+.+.|+.-.|.
T Consensus 141 ~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 141 G-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred C-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 2 2467999999999998766677777777663
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=91.23 E-value=0.21 Score=43.30 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=31.7
Q ss_pred EEEechhccCCCCCCCceEEEEEcCCCCcccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCHH
Q 025809 60 TAALSTALFNNGVTCGACFEIKCVNDNRWCLPGSIIVTATNFCPPNHALPNNAGGWCNPPLQHFDLSQP 128 (247)
Q Consensus 60 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~~C~~~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~ 128 (247)
+||++-.--.+...|++|||++=++.+ -.+++.+|++|+.=-+ + ..+||||.-.
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~--l~GKkmiVQ~tNtG~d---l----------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP--LKGKKMIVQVTNTGGD---L----------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST--TTT-EEEEEEEEE-TT---T----------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC--cCCCEeEEEecccCCC---C----------CCCeEEEEeC
Confidence 566662222233689999999998643 2245999999996432 1 2589999643
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=75.63 E-value=6.1 Score=30.25 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=34.4
Q ss_pred eEEEEEEccCCcee----ecCCCCCceEEeCCC---------CCCcceEEEEEecCCeEEE
Q 025809 180 VVSVSIKGSRTGWQ----PMSRNWGQNWQSNSY---------LNGQALSFQVTTSDGRSVI 227 (247)
Q Consensus 180 I~sVeI~~~g~~W~----~m~r~~gn~W~~~~~---------l~g~p~~vRvTs~~G~~vv 227 (247)
-++|+|.++-..|. +|.|...-+|++.-+ ..+..++++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 36777776656775 488877779986422 2566899999987888754
No 17
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.27 E-value=25 Score=32.56 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=48.9
Q ss_pred eeEEEeeeecCCceeEEEc-CccceeEEEEEeecCCcceEEEEEEccCCceeecCCCCCceEEeCCCCCCcceEEEEEe-
Q 025809 143 VQYRRVACRKSGGIRFTIN-GHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQALSFQVTT- 220 (247)
Q Consensus 143 i~~r~V~C~~~gni~~~v~-~~~yw~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~gn~W~~~~~l~g~p~~vRvTs- 220 (247)
+.|..|+ .+..+.|.+. +++.+ . ..++.++|...+|-.. .| +++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~---~--f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL---N--VAGISGPVAAYSLPAN---------------------IG-ELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce---e--cCCCcccEEEEEcccc---------------------cc-cEEEEEEEE
Confidence 5687775 4467888888 56665 1 2233455655554432 22 78999998
Q ss_pred cCCeEEEEcc--ccCCCCCCCeEEeCCCC
Q 025809 221 SDGRSVISIN--VAPPNWSFGRTYNGRQF 247 (247)
Q Consensus 221 ~~G~~vv~~~--vip~~w~~g~~Y~~~~~ 247 (247)
...+.|-+.+ ++-++|++-++|.+..|
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 3334666665 66788888888888755
No 18
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=55.86 E-value=19 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=15.8
Q ss_pred CCc-ceEEEEEEccC-CceeecCCC
Q 025809 176 GAG-DVVSVSIKGSR-TGWQPMSRN 198 (247)
Q Consensus 176 g~~-~I~sVeI~~~g-~~W~~m~r~ 198 (247)
|.+ +|.+|||...+ .+|++.+..
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~ 62 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLD 62 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEE
T ss_pred CCCcceEEEEEEeCCCCCcEEeEec
Confidence 335 89999999887 569876543
No 19
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=53.42 E-value=27 Score=32.23 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=29.9
Q ss_pred cceEEEEEEccCC-ceeecCCCCCc-------eEEeCCCC-CC-cceEEEEEecCCe
Q 025809 178 GDVVSVSIKGSRT-GWQPMSRNWGQ-------NWQSNSYL-NG-QALSFQVTTSDGR 224 (247)
Q Consensus 178 ~~I~sVeI~~~g~-~W~~m~r~~gn-------~W~~~~~l-~g-~p~~vRvTs~~G~ 224 (247)
..|++|||..+++ +|++..-.... .|++.-++ .| --+.+|.+|..|+
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~ 292 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGN 292 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCC
Confidence 5799999998875 89987653211 45554222 22 2566666777774
No 20
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=41.67 E-value=58 Score=23.44 Aligned_cols=45 Identities=29% Similarity=0.439 Sum_probs=28.5
Q ss_pred EEEEEEccCCce--eecCCCCCceEEeCCCCCCcceEEEEEecCCeEE
Q 025809 181 VSVSIKGSRTGW--QPMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSV 226 (247)
Q Consensus 181 ~sVeI~~~g~~W--~~m~r~~gn~W~~~~~l~g~p~~vRvTs~~G~~v 226 (247)
++|+|.++-..| .+|+|.....|++.-++..+.+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPGRYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCCcEEEEEE-ECCEEe
Confidence 788888775567 468887656787654443224555554 356665
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=38.60 E-value=2.1e+02 Score=23.05 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=25.8
Q ss_pred ceeEEEc------CccceeEEEEEeecCCcceEEEEEEcc
Q 025809 155 GIRFTIN------GHSYFNLVLITNVGGAGDVVSVSIKGS 188 (247)
Q Consensus 155 ni~~~v~------~~~yw~av~v~n~~g~~~I~sVeI~~~ 188 (247)
.+.+.+. +.+||.-+.|.|.+| ...++|+|.+.
T Consensus 35 ~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 35 VLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred eEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 5666554 357999999999887 57899999854
No 22
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=36.85 E-value=1.2e+02 Score=21.77 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=35.5
Q ss_pred EEEEeecCCcceEEEEEEccCCcee---ecCCCCCceEEeCCCCCCcceEEEEEecCCeEEEEc
Q 025809 169 VLITNVGGAGDVVSVSIKGSRTGWQ---PMSRNWGQNWQSNSYLNGQALSFQVTTSDGRSVISI 229 (247)
Q Consensus 169 v~v~n~~g~~~I~sVeI~~~g~~W~---~m~r~~gn~W~~~~~l~g~p~~vRvTs~~G~~vv~~ 229 (247)
+.+...+ +-++|+|.++=..|. +|.|..+. |...-.|..+.+..|+- .+|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~-Vdg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFI-VDGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEE-ECCEEEeCC
Confidence 4444443 358999998756676 58887665 77544443236777776 367877654
No 23
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=35.33 E-value=1.3e+02 Score=22.11 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=20.4
Q ss_pred eecCCCC-CceEEeC--CCCCCcceEEEEEecCCeEE
Q 025809 193 QPMSRNW-GQNWQSN--SYLNGQALSFQVTTSDGRSV 226 (247)
Q Consensus 193 ~~m~r~~-gn~W~~~--~~l~g~p~~vRvTs~~G~~v 226 (247)
.+|.|.. ..+|... ....+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677755 5678743 22223469999987555443
No 24
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=34.91 E-value=22 Score=22.75 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=9.3
Q ss_pred cccCCCCCCCe
Q 025809 230 NVAPPNWSFGR 240 (247)
Q Consensus 230 ~vip~~w~~g~ 240 (247)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999984
No 25
>PLN00177 sulfite oxidase; Provisional
Probab=29.93 E-value=1.3e+02 Score=28.75 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=18.0
Q ss_pred eecCCcceEEEEEEccC-CceeecCC
Q 025809 173 NVGGAGDVVSVSIKGSR-TGWQPMSR 197 (247)
Q Consensus 173 n~~g~~~I~sVeI~~~g-~~W~~m~r 197 (247)
..+|...|++|||...+ .+|+..+.
T Consensus 291 wsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 291 LSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred ECCCCccEEEEEEEcCCCCCceeeee
Confidence 33443369999999887 58997754
No 26
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.42 E-value=1.6e+02 Score=27.93 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=18.4
Q ss_pred eecCCcceEEEEEEccC-CceeecCC
Q 025809 173 NVGGAGDVVSVSIKGSR-TGWQPMSR 197 (247)
Q Consensus 173 n~~g~~~I~sVeI~~~g-~~W~~m~r 197 (247)
..+|...|++|||..++ .+|+...-
T Consensus 271 ~sgg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 271 WSGGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred ECCCCCcEEEEEEECCCCCcceeCCc
Confidence 33443479999999887 47997764
No 27
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=26.45 E-value=1.4e+02 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCcceEEEEEEccC-CceeecCCCC--C-c---eEEeC-CCCCC-cceEEEEEecCCe
Q 025809 176 GAGDVVSVSIKGSR-TGWQPMSRNW--G-Q---NWQSN-SYLNG-QALSFQVTTSDGR 224 (247)
Q Consensus 176 g~~~I~sVeI~~~g-~~W~~m~r~~--g-n---~W~~~-~~l~g-~p~~vRvTs~~G~ 224 (247)
|.+.|.+|||..++ .+|+...... + . -|.+. .+..+ --+-.|-||..|+
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~ 293 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGY 293 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCC
Confidence 44579999999887 4799776531 1 1 23322 12222 2455566777774
No 28
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.52 E-value=53 Score=25.11 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHhhhccc
Q 025809 3 FLGIFLVASLSMLRTIHG 20 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (247)
+|++||++||.+++.+.+
T Consensus 8 lL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 466666666666654443
No 29
>PF15240 Pro-rich: Proline-rich
Probab=24.45 E-value=49 Score=28.38 Aligned_cols=14 Identities=36% Similarity=0.444 Sum_probs=7.9
Q ss_pred HHHHH-HHHHHHhhh
Q 025809 4 LGIFL-VASLSMLRT 17 (247)
Q Consensus 4 ~~~~~-~~~~~~~~~ 17 (247)
|-||| |||||++++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 44555 666666553
No 30
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=24.04 E-value=56 Score=27.04 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhhhcccCCCCee
Q 025809 3 FLGIFLVASLSMLRTIHGYAGGWS 26 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (247)
+|.++++++| +.||++|+.+++.
T Consensus 5 ~l~~~~~~al-LtGCsag~~~~f~ 27 (144)
T TIGR02747 5 FLLLIACVAF-LTGCSAGCNSNFS 27 (144)
T ss_pred ehhHHHHHHH-hhcccCCCCCCcc
Confidence 6777878888 9999888877764
No 31
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=23.84 E-value=1.5e+02 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=11.6
Q ss_pred ceEEEEEecCCeEEEEc
Q 025809 213 ALSFQVTTSDGRSVISI 229 (247)
Q Consensus 213 p~~vRvTs~~G~~vv~~ 229 (247)
+++++.+|++|+...+.
T Consensus 81 ~l~v~~~Dn~G~~~~~~ 97 (100)
T PF08770_consen 81 TLTVTWTDNKGNSFSAE 97 (100)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred EEEEEEEECCCCEEEEE
Confidence 77888888888766553
No 32
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=23.24 E-value=1.8e+02 Score=20.47 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=28.8
Q ss_pred eEEEEEEccCCc-e----eecC-CCCCceEEeCC--CCC-C-cceEEEEEecCCeEEE
Q 025809 180 VVSVSIKGSRTG-W----QPMS-RNWGQNWQSNS--YLN-G-QALSFQVTTSDGRSVI 227 (247)
Q Consensus 180 I~sVeI~~~g~~-W----~~m~-r~~gn~W~~~~--~l~-g-~p~~vRvTs~~G~~vv 227 (247)
-++|+|...... | .+|+ +..+.+|.+.- .+. + .-+.+||+...|++..
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~ 79 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPE 79 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEE
Confidence 345555543322 3 4777 46677897642 344 3 3799999988875544
No 33
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=22.27 E-value=2.4e+02 Score=23.23 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=25.4
Q ss_pred cccceeEEEeeeecCCceeEEEc--C--ccceeEEEEEeecCCcceEEEEEE
Q 025809 139 GIVPVQYRRVACRKSGGIRFTIN--G--HSYFNLVLITNVGGAGDVVSVSIK 186 (247)
Q Consensus 139 G~v~i~~r~V~C~~~gni~~~v~--~--~~yw~av~v~n~~g~~~I~sVeI~ 186 (247)
|-++|+-|+-| -.++..+.+= | +|+|+.|++ +.+|+ ++.-|...
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG~-~~a~v~~~ 105 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGGE-PFAVVQVQ 105 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCCc-EEEEEEec
Confidence 55566555554 1235555443 3 899999888 56653 55544443
No 34
>PRK10301 hypothetical protein; Provisional
Probab=22.08 E-value=1e+02 Score=24.49 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.4
Q ss_pred ccCcccceeEEEeeee---cCCceeEEEc
Q 025809 136 YKAGIVPVQYRRVACR---KSGGIRFTIN 161 (247)
Q Consensus 136 ~~~G~v~i~~r~V~C~---~~gni~~~v~ 161 (247)
...|.+.|+||-|+=+ ..|.+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 4679999999999986 3578888875
No 35
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=21.70 E-value=2.3e+02 Score=26.89 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=29.5
Q ss_pred CCcceEEEEEEccC-CceeecCCC--CCc----eEEeCC-CC-CC-cceEEEEEecCCe
Q 025809 176 GAGDVVSVSIKGSR-TGWQPMSRN--WGQ----NWQSNS-YL-NG-QALSFQVTTSDGR 224 (247)
Q Consensus 176 g~~~I~sVeI~~~g-~~W~~m~r~--~gn----~W~~~~-~l-~g-~p~~vRvTs~~G~ 224 (247)
|...|++|||..++ .+|++..-. .+. .|++.- +. .| .-+.+|-||..|.
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~ 344 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQ 344 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCC
Confidence 33579999999887 579876532 232 355542 22 33 1455566777774
No 36
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.19 E-value=3.4e+02 Score=19.96 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=21.4
Q ss_pred eecCCCCCceEEeC--CCCCCcceEEEEEecCCeE
Q 025809 193 QPMSRNWGQNWQSN--SYLNGQALSFQVTTSDGRS 225 (247)
Q Consensus 193 ~~m~r~~gn~W~~~--~~l~g~p~~vRvTs~~G~~ 225 (247)
.+|.|..+.+|.+. ..+.+.-+.+||....++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 46777777888753 3344557888887654443
No 37
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=20.31 E-value=5.6e+02 Score=22.42 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=43.2
Q ss_pred CceeeCHHHHHHhhcccCcccceeEEEeeeecCCceeEEEcC-ccceeEEEEEeecCCcceEEEEEEccCCceeecCCCC
Q 025809 121 QHFDLSQPIFQHIAHYKAGIVPVQYRRVACRKSGGIRFTING-HSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNW 199 (247)
Q Consensus 121 ~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~~-~~yw~av~v~n~~g~~~I~sVeI~~~g~~W~~m~r~~ 199 (247)
.+|.++|.+|..-.. .|..-+=...+.+.|.|+. + ++|.|.+..-..+|..-.|. + ..
T Consensus 48 ~~FyV~P~~f~~~tG--------~WY~~~~~~~~~~aF~V~~Ps---l~l~v~d~~t~~dvt~~~V~--------~--G~ 106 (209)
T PF12863_consen 48 TNFYVSPAAFGGKTG--------NWYQWNGTPKGDVAFYVQDPS---LSLKVWDANTDKDVTGKTVP--------R--GD 106 (209)
T ss_pred cCEEEChHHhCCccc--------ceEecCCCCCcceEEEEeCCc---eEEEEEeccccccccCceec--------c--CC
Confidence 589999999975432 2333322222366777762 2 44555443322233222221 1 11
Q ss_pred CceEEeCC-----------CCCCcceEEEEEecCCeEEEE
Q 025809 200 GQNWQSNS-----------YLNGQALSFQVTTSDGRSVIS 228 (247)
Q Consensus 200 gn~W~~~~-----------~l~g~p~~vRvTs~~G~~vv~ 228 (247)
.-.|+++. .....+++|+|++.+|.++..
T Consensus 107 ~v~FrI~tNL~~~~~R~g~~~~~~~v~I~V~~P~G~~~t~ 146 (209)
T PF12863_consen 107 NVNFRIDTNLYSIFQRGGYTPGDGPVDIKVTTPSGATYTS 146 (209)
T ss_pred eEEEEEcccHHHHhhcCCCCCCcceEEEEEeCCCCcEEEE
Confidence 12233221 111125999999888876553
Done!