BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025810
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 20/228 (8%)
Query: 27 SSRASFYGSPDGLGTP--AGACGFGAYGKTVNDANVAGVS-----RLWNNGTGCGACYQV 79
+++++YG P G G GACG+ K V+ +G++ ++ +G GCG+C+++
Sbjct: 21 DAKSTWYGKPTGAGPKDNGGACGY----KDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEI 76
Query: 80 RCNVPEXXXXXXXXXXXXXXXXXXXX--XFVLSPRAFGRMALVDKSEELYTFGVVDVEFL 137
+C PE F LS AFG MA ++L + G ++++F
Sbjct: 77 KCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFR 136
Query: 138 RVPCRF-RGYNLKFKVHENSKYPQYLAVSMLYVGGQNDVLAVEMWQEDCKDWVAMRRAFG 196
RV C++ G + F V + S P YLA+ + YV G DV+AV++ ++ W+ ++ ++G
Sbjct: 137 RVKCKYPEGTKVTFHVEKGSN-PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWG 195
Query: 197 AVFDISNPPP--GAINLRFQVSGSAGLTWVVANNAIPQIWKAGVAYES 242
A++ I P G +R+ G T A + IP+ WKA +YES
Sbjct: 196 AIWRIDTPDKLTGPFTVRYTTEGG---TKTEAEDVIPEGWKADTSYES 240
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 20/234 (8%)
Query: 25 FTSSRASFYGSPDGLGTP--AGACGFGAYGKTVNDANVAGVSR-----LWNNGTGCGACY 77
+ ++RA++YG P+G G P GACG K VN +G++ ++ +G GCG+CY
Sbjct: 19 WLTARATWYGQPNGAGAPDNGGACGI----KNVNLPPYSGMTACGNVPIFKDGKGCGSCY 74
Query: 78 QVRCN-VPE-XXXXXXXXXXXXXXXXXXXXXFVLSPRAFGRMALVDKSEELYTFGVVDVE 135
+VRC PE F LS +AFG +A ++++ G++DVE
Sbjct: 75 EVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVE 134
Query: 136 FLRVPCRF-RGYNLKFKVHENSKYPQYLAVSMLYVGGQNDVLAVEMWQEDCKDWVAMRRA 194
F RV C++ G + F + + P YLAV + YV D++ +E+ + +W M+ +
Sbjct: 135 FRRVRCKYPAGQKIVFHIEKGCN-PNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLS 193
Query: 195 FGAVF--DISNPPPGAINLRFQVSGSAGLTWVVANNAIPQIWKAGVAYESAIQL 246
+GA++ D + G ++R S V+A + IP W+ Y S +Q
Sbjct: 194 WGAIWRMDTAKALKGPFSIRLT---SESGKKVIAKDVIPANWRPDAVYTSNVQF 244
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 160 QYLAVSMLYVGGQNDVLA-VEMWQEDCKDWVAMRRAFGAV--FDISNPPPGAINLRFQVS 216
++LAV + Y G D +A VE+ + +WVAM + G V FD P G N RF
Sbjct: 15 KHLAVLVKYEG---DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT- 70
Query: 217 GSAGLTWVVANNAIPQIWKAGVAY 240
G+ V ++ +P+ + G Y
Sbjct: 71 -EKGMKNVF-DDVVPEKYTIGATY 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,866,744
Number of Sequences: 62578
Number of extensions: 265877
Number of successful extensions: 414
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)