Query 025810
Match_columns 247
No_of_seqs 160 out of 989
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 3.7E-72 8.1E-77 490.4 27.5 242 5-247 6-247 (247)
2 PLN00193 expansin-A; Provision 100.0 3.7E-64 8E-69 442.0 25.8 213 20-246 25-256 (256)
3 PLN00050 expansin A; Provision 100.0 9.6E-63 2.1E-67 431.4 25.0 210 22-246 22-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 8.9E-29 1.9E-33 203.5 19.1 199 18-247 23-231 (232)
5 PLN03024 Putative EG45-like do 100.0 3.2E-29 6.9E-34 199.4 13.0 113 6-138 6-125 (125)
6 PLN00115 pollen allergen group 99.9 1.8E-24 3.8E-29 170.2 11.3 92 146-246 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 3.6E-23 7.7E-28 153.8 10.5 80 148-231 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 2.6E-22 5.6E-27 150.6 6.4 70 60-136 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 1.3E-19 2.9E-24 133.0 6.8 70 60-136 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 1.2E-10 2.6E-15 90.3 4.3 63 70-141 57-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 3.7E-06 8.1E-11 66.5 8.7 70 57-140 42-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00017 3.6E-09 62.1 10.9 95 28-144 1-96 (208)
13 PRK10672 rare lipoprotein A; P 97.3 0.003 6.5E-08 58.7 11.0 91 27-139 80-171 (361)
14 COG0797 RlpA Lipoproteins [Cel 97.2 0.0011 2.3E-08 58.1 7.3 59 73-142 119-178 (233)
15 PF02015 Glyco_hydro_45: Glyco 90.6 0.26 5.7E-06 42.4 3.2 52 60-112 70-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 88.2 0.93 2E-05 36.4 4.7 50 171-220 38-104 (131)
17 cd02110 SO_family_Moco_dimer S 83.5 2.6 5.7E-05 38.7 5.8 50 171-220 234-291 (317)
18 cd02114 bact_SorA_Moco sulfite 69.3 14 0.00029 34.9 6.3 50 171-220 286-343 (367)
19 PLN00177 sulfite oxidase; Prov 67.9 12 0.00026 35.6 5.7 51 170-220 293-360 (393)
20 cd02113 bact_SoxC_Moco bacteri 66.7 14 0.0003 34.3 5.7 51 170-220 235-292 (326)
21 PF12863 DUF3821: Domain of un 56.5 98 0.0021 26.9 8.8 93 103-220 46-141 (209)
22 cd02111 eukary_SO_Moco molybdo 55.5 39 0.00084 31.8 6.7 51 170-220 273-337 (365)
23 cd02112 eukary_NR_Moco molybdo 44.7 54 0.0012 31.1 5.8 48 173-220 300-362 (386)
24 COG2372 CopC Uncharacterized p 39.1 43 0.00094 26.8 3.6 28 126-154 96-126 (127)
25 PF04149 DUF397: Domain of unk 36.9 87 0.0019 21.2 4.4 37 74-118 15-51 (56)
26 PRK13159 cytochrome c-type bio 36.3 57 0.0012 27.0 4.0 30 209-238 72-101 (155)
27 PLN02252 nitrate reductase [NA 36.3 94 0.002 32.8 6.5 53 168-220 367-434 (888)
28 KOG1779 40s ribosomal protein 33.6 47 0.001 24.5 2.7 27 71-105 35-61 (84)
29 TIGR02588 conserved hypothetic 32.3 2.1E+02 0.0046 22.8 6.5 24 158-182 49-72 (122)
30 PRK10301 hypothetical protein; 31.6 68 0.0015 25.3 3.7 26 127-153 96-124 (124)
31 KOG4192 Uncharacterized conser 29.3 3E+02 0.0065 22.0 7.4 74 105-193 43-124 (134)
32 PF04234 CopC: CopC domain; I 26.6 72 0.0016 23.7 2.9 26 127-153 69-97 (97)
33 PF10417 1-cysPrx_C: C-termina 26.0 39 0.00084 21.3 1.1 11 228-238 10-20 (40)
34 PF04620 FlaA: Flagellar filam 25.2 2E+02 0.0044 25.1 5.8 44 146-192 108-151 (217)
35 PF03100 CcmE: CcmE; InterPro 24.4 1.2E+02 0.0026 24.0 3.9 30 209-238 71-100 (131)
36 PF02903 Alpha-amylase_N: Alph 23.9 3.3E+02 0.0072 20.7 6.7 54 172-227 31-97 (120)
37 PTZ00459 mucin-associated surf 22.6 61 0.0013 29.5 2.2 15 4-18 7-21 (291)
38 PF11023 DUF2614: Protein of u 21.9 41 0.00089 26.4 0.8 41 69-112 60-100 (114)
39 PRK13150 cytochrome c-type bio 21.9 1.4E+02 0.0031 24.8 4.0 30 209-238 78-107 (159)
40 PRK13165 cytochrome c-type bio 21.6 1.4E+02 0.0031 24.8 4.0 30 209-238 78-107 (160)
41 PF08481 GBS_Bsp-like: GBS Bsp 21.1 3.6E+02 0.0077 20.1 10.5 65 159-224 10-86 (95)
42 PF13719 zinc_ribbon_5: zinc-r 20.3 67 0.0014 19.7 1.3 17 99-115 4-20 (37)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=3.7e-72 Score=490.39 Aligned_cols=242 Identities=68% Similarity=1.243 Sum_probs=225.3
Q ss_pred hhHHHHHHHhhhhccccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEeCCC
Q 025810 5 QYYLLSVVLLLPALCYSQFTFTSSRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVSRLWNNGTGCGACYQVRCNVP 84 (247)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~ 84 (247)
.|++|+++++++.+..++ .|++++|||||++++.|+++|||||+++..+.++.++||+++||++|++||+||||+|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~ 84 (247)
T PLN03023 6 YCCFLCVIVLLPLLCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKAP 84 (247)
T ss_pred hHHHHHHHHHhhhhhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCCC
Confidence 366777777777766666 4999999999999999999999999998887888999999999999999999999999999
Q ss_pred CcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeecccCCceEEEEecCCCCCcEEEE
Q 025810 85 EVCTDYGVYVVVTDYGEGDDTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCRFRGYNLKFKVHENSKYPQYLAV 164 (247)
Q Consensus 85 ~~C~~~~v~V~V~D~Cp~~~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~~~g~ni~~~v~~gS~~~~w~a~ 164 (247)
++|++++|+|+|||.||+++.|||||..||.+||.|++++++++.|+++|+||||||.++|++|+|+|+++|.+++||++
T Consensus 85 ~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~v 164 (247)
T PLN03023 85 NLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAI 164 (247)
T ss_pred CccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEE
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999955999999
Q ss_pred EEEEcCCCcceEEEEEEecCCCCeEEcccccCceeecCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCcCCcEEecCC
Q 025810 165 SMLYVGGQNDVLAVEMWQEDCKDWVAMRRAFGAVFDISNPPPGAINLRFQVSGSAGLTWVVANNAIPQIWKAGVAYESAI 244 (247)
Q Consensus 165 ~i~n~gg~~~I~sVev~~~~~~~W~~m~R~~gn~W~~~~~~~gp~~lr~~vt~~~G~~~vv~~~vip~~w~~g~~y~t~~ 244 (247)
+|.|++|.++|++|||+++++..|++|+|+||++|+.+.+++|||+|||+++.++|+++|+++||||++|++|+||++.+
T Consensus 165 lv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~v 244 (247)
T PLN03023 165 VMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNI 244 (247)
T ss_pred EEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEeccc
Confidence 99999999999999999877889999999999999999999999999999998887456899999999999999999999
Q ss_pred CCC
Q 025810 245 QLA 247 (247)
Q Consensus 245 qF~ 247 (247)
||+
T Consensus 245 q~~ 247 (247)
T PLN03023 245 QLD 247 (247)
T ss_pred ccC
Confidence 996
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=3.7e-64 Score=442.02 Aligned_cols=213 Identities=29% Similarity=0.592 Sum_probs=192.3
Q ss_pred ccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEeC---CCCcccCC-cEEE
Q 025810 20 YSQFTFTSSRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVS-RLWNNGTGCGACYQVRCN---VPEVCTDY-GVYV 94 (247)
Q Consensus 20 ~~~~~~~~g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~---~~~~C~~~-~v~V 94 (247)
...++|++|+||||+.+++.|+++|||||+++..++++.++||+| ++|++|+.||+||||+|. ++++|.++ +|+|
T Consensus 25 ~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V 104 (256)
T PLN00193 25 FTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI 104 (256)
T ss_pred cCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence 335589999999999998888899999999988888899999999 999999999999999994 56789765 8999
Q ss_pred EEeeCCCC-----------C---CCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeecccCCceEEEEecCCCCCc
Q 025810 95 VVTDYGEG-----------D---DTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCRFRGYNLKFKVHENSKYPQ 160 (247)
Q Consensus 95 ~V~D~Cp~-----------~---~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~~~g~ni~~~v~~gS~~~~ 160 (247)
+|||+||. | +.|||||+.||.+|| .++.|+++|+||||+|+++| ||+|+|++ ++|
T Consensus 105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA-------~~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y 173 (256)
T PLN00193 105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIG-------IYRGGIVPVLFQRVPCKKHG-GVRFTING---RDY 173 (256)
T ss_pred EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHh-------hhcCCeEeEEEEEeccccCC-CcEEEEcC---Ccc
Confidence 99999996 3 479999999999999 45799999999999999999 99999984 589
Q ss_pred EEEEEEEEcCCCcceEEEEEEecCCCCeEEcccccCceeecCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCcCCcEE
Q 025810 161 YLAVSMLYVGGQNDVLAVEMWQEDCKDWVAMRRAFGAVFDISNPPPGAINLRFQVSGSAGLTWVVANNAIPQIWKAGVAY 240 (247)
Q Consensus 161 w~a~~i~n~gg~~~I~sVev~~~~~~~W~~m~R~~gn~W~~~~~~~gp~~lr~~vt~~~G~~~vv~~~vip~~w~~g~~y 240 (247)
|++++|.|++|.++|++|||++.+ ..|++|+|+||++|+.+.++.++ +|+||||+.+| +++++.||||++|++|++|
T Consensus 174 ~~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~-plsfRvts~~G-~~~~~~~viPa~W~~G~ty 250 (256)
T PLN00193 174 FELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQ-SLSFKVTTTDG-QTRFFLNVVPANWGFGQTF 250 (256)
T ss_pred EEEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCC-CEEEEEEEcCC-eEEEECceeCCCCCCCCeE
Confidence 999999999999999999999754 58999999999999998777775 57777777788 8999999999999999999
Q ss_pred ecCCCC
Q 025810 241 ESAIQL 246 (247)
Q Consensus 241 ~t~~qF 246 (247)
++.+||
T Consensus 251 ~s~vqf 256 (256)
T PLN00193 251 SSSVQF 256 (256)
T ss_pred ecCccC
Confidence 999998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=9.6e-63 Score=431.44 Aligned_cols=210 Identities=33% Similarity=0.625 Sum_probs=190.0
Q ss_pred CCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEeCCC-CcccCCcEEEEEeeC
Q 025810 22 QFTFTSSRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVS-RLWNNGTGCGACYQVRCNVP-EVCTDYGVYVVVTDY 99 (247)
Q Consensus 22 ~~~~~~g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~-~~C~~~~v~V~V~D~ 99 (247)
..+|.+++|||||.+++.|+++|||||+++..++++.++||+| .+|++|+.||+||||+|.+. .+|.+++|+|+|||+
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~ 101 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNF 101 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecC
Confidence 4579999999999999888999999999988888999999999 99999999999999999653 579999999999999
Q ss_pred CCC-----------C---CCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeecccCCceEEEEecCCCCCcEEEEE
Q 025810 100 GEG-----------D---DTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCRFRGYNLKFKVHENSKYPQYLAVS 165 (247)
Q Consensus 100 Cp~-----------~---~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~~~g~ni~~~v~~gS~~~~w~a~~ 165 (247)
||. | +.|||||++||.+||. ++.|+++|+||||||.++| ||+|+|++++ ||++++
T Consensus 102 CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~s---y~~~vl 170 (247)
T PLN00050 102 CPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGHS---YFNLVL 170 (247)
T ss_pred CCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCCc---eeEEEE
Confidence 996 3 4899999999999994 5799999999999999999 9999998744 999999
Q ss_pred EEEcCCCcceEEEEEEecCCCCeEEcccccCceeecCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCcCCcEEecCCC
Q 025810 166 MLYVGGQNDVLAVEMWQEDCKDWVAMRRAFGAVFDISNPPPGAINLRFQVSGSAGLTWVVANNAIPQIWKAGVAYESAIQ 245 (247)
Q Consensus 166 i~n~gg~~~I~sVev~~~~~~~W~~m~R~~gn~W~~~~~~~gp~~lr~~vt~~~G~~~vv~~~vip~~w~~g~~y~t~~q 245 (247)
|.|++|.++|++|||+++ ...|++|+|+||++|+.+.++.++ +|+||||+.+| +++++.||||++|++|++|++. |
T Consensus 171 v~nv~G~gdi~~V~ikg~-~~~W~~M~R~wGa~W~~~~~l~g~-~lsfRvt~~~G-~~~~~~~V~Pa~W~~G~ty~~~-~ 246 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGS-KSNWQAMSRNWGQNWQSNSYLNGQ-ALSFKVTTSDG-RTVISNNAAPSNWAFGQTYTGM-Q 246 (247)
T ss_pred EEEcCCCccEEEEEEecC-CCCeeECccccCceeEccCCCCCC-cEEEEEEecCC-cEEEECceeCCCCCCCCeEecC-c
Confidence 999999999999999964 358999999999999988777774 56677777777 8999999999999999999994 8
Q ss_pred C
Q 025810 246 L 246 (247)
Q Consensus 246 F 246 (247)
|
T Consensus 247 f 247 (247)
T PLN00050 247 F 247 (247)
T ss_pred C
Confidence 8
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.97 E-value=8.9e-29 Score=203.53 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=161.1
Q ss_pred ccccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCC----CCCCceEEEEeCCCCcccCCcE
Q 025810 18 LCYSQFTFTSSRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVS-RLWNNG----TGCGACYQVRCNVPEVCTDYGV 92 (247)
Q Consensus 18 ~~~~~~~~~~g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g----~~CG~C~~V~c~~~~~C~~~~v 92 (247)
..++-++.++|.|||-+.+. .+||--. ++.+..+.|.|+| .+-+-| +.-|+.++|. +| ++.+
T Consensus 23 ~s~awd~~f~G~ATyTgsGY----sGGAflL---DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~T 89 (232)
T COG4305 23 ASAAWDDLFEGYATYTGSGY----SGGAFLL---DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKT 89 (232)
T ss_pred cccccccccceeEEEecccc----cCceEEe---cCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCce
Confidence 33455567899999987753 5777653 4445578899999 666644 6799999998 55 6788
Q ss_pred EEEEeeCCCCC-CCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeecccCCceEEEEecCCCCCcEEEEEEEEcCC
Q 025810 93 YVVVTDYGEGD-DTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCRFRGYNLKFKVHENSKYPQYLAVSMLYVGG 171 (247)
Q Consensus 93 ~V~V~D~Cp~~-~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~~~g~ni~~~v~~gS~~~~w~a~~i~n~gg 171 (247)
+|.|||+.|+. .+.|||||.||.+|+ ++.+|+|+|+||.|+-|.+| |+.+++|||| +.||.++|++||
T Consensus 90 TVYVTDlYPegasGaLDLSpNAFakIG-------nm~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVRnH-- 158 (232)
T COG4305 90 TVYVTDLYPEGASGALDLSPNAFAKIG-------NMKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVRNH-- 158 (232)
T ss_pred EEEEecccccccccccccChHHHhhhc-------chhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeeecc--
Confidence 99999999986 599999999999999 57899999999999999999 9999999999 899999999999
Q ss_pred CcceEEEEEEecCCCCeEEcccccCceeecCCCCCCCeeEEEEEEecCCCEEEEEecccCCCCcC--CcEEe--cCCCCC
Q 025810 172 QNDVLAVEMWQEDCKDWVAMRRAFGAVFDISNPPPGAINLRFQVSGSAGLTWVVANNAIPQIWKA--GVAYE--SAIQLA 247 (247)
Q Consensus 172 ~~~I~sVev~~~~~~~W~~m~R~~gn~W~~~~~~~gp~~lr~~vt~~~G~~~vv~~~vip~~w~~--g~~y~--t~~qF~ 247 (247)
+.||.++|+.+ ++.|..|.+.+||+|...+...+| |.+|.|++.| +.++ +.+|.--|. .+.|. +.+||+
T Consensus 159 ~yPV~KlE~~q--dg~WinlpK~dYNhFVgT~LG~~p--L~~RmTDIRG-~~l~--DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 159 KYPVMKLEYEQ--DGKWINLPKMDYNHFVGTNLGTGP--LKVRMTDIRG-KVLK--DTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred cCceEEEEEec--CCeEeeccccccceeeccccCCCc--eEEEEeeccc-ceee--cccccccccccCCceeecceeecC
Confidence 99999999985 578999999999999876655666 6778889999 5443 346654432 33343 678885
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=3.2e-29 Score=199.43 Aligned_cols=113 Identities=30% Similarity=0.554 Sum_probs=92.2
Q ss_pred hHHHHHHHhhhhccccCCCceeEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEec-cccCCCCCCCceEEEEeCCC
Q 025810 6 YYLLSVVLLLPALCYSQFTFTSSRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVS-RLWNNGTGCGACYQVRCNVP 84 (247)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s-~~~~~g~~CG~C~~V~c~~~ 84 (247)
|.++.+++++.++..++ +|+||||++. ..|||+ ++ .+++.++||+| .+|++|..||+||||+|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~----~G~AT~Y~~~-----~~gAC~-~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~ 72 (125)
T PLN03024 6 LIFSTVLVFLFSVSYAT----PGIATFYTSY-----TPSACY-RG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGP 72 (125)
T ss_pred HHHHHHHHHHhhhhccc----ceEEEEeCCC-----CCcccc-CC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCC
Confidence 44444555555544443 4999999875 368994 43 24678999999 99999999999999999765
Q ss_pred -----CcccCCcEEEEEeeCCC-CCCCCeeeCHHHHhhccccccccccccCcEEEEEEEE
Q 025810 85 -----EVCTDYGVYVVVTDYGE-GDDTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLR 138 (247)
Q Consensus 85 -----~~C~~~~v~V~V~D~Cp-~~~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~ 138 (247)
.+|++++|+|+|+|+|| +|..|||||++||.+||+ .+.|+++|+|.+
T Consensus 73 ~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 73 RNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred CccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 37999999999999999 588999999999999995 468999999974
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=1.8e-24 Score=170.20 Aligned_cols=92 Identities=28% Similarity=0.542 Sum_probs=80.9
Q ss_pred CceEEEEecCCCCCcEEEEEEEEcCCCcceEEEEEEecCCCCeE-EcccccCceeecC--CCCCCCeeEEEEEEecCCCE
Q 025810 146 YNLKFKVHENSKYPQYLAVSMLYVGGQNDVLAVEMWQEDCKDWV-AMRRAFGAVFDIS--NPPPGAINLRFQVSGSAGLT 222 (247)
Q Consensus 146 ~ni~~~v~~gS~~~~w~a~~i~n~gg~~~I~sVev~~~~~~~W~-~m~R~~gn~W~~~--~~~~gp~~lr~~vt~~~G~~ 222 (247)
++|+|+|+++| |++||++++ | ++|.+|||++.++..|+ +|+|+||++|+.+ .+++|||++||++ .+| +
T Consensus 24 ~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~--~~G-~ 94 (118)
T PLN00115 24 TEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV--KGG-G 94 (118)
T ss_pred CceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE--eCC-C
Confidence 59999999999 899998765 3 47999999998888999 9999999999964 4789987766655 466 6
Q ss_pred EEEEecccCCCCcCCcEEecCCCC
Q 025810 223 WVVANNAIPQIWKAGVAYESAIQL 246 (247)
Q Consensus 223 ~vv~~~vip~~w~~g~~y~t~~qF 246 (247)
+++++||||++||+|++|++++||
T Consensus 95 ~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 95 YRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred EEEECceECCCCCCCCEEeccccC
Confidence 899999999999999999999998
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=3.6e-23 Score=153.77 Aligned_cols=80 Identities=45% Similarity=0.825 Sum_probs=65.4
Q ss_pred eEEEEecCCCCCcEEEEEEEEcCCCcceEEEEEEecCCCCeEEcccccCceeecC-CCCCCCeeEEEEEEecC-CCEEEE
Q 025810 148 LKFKVHENSKYPQYLAVSMLYVGGQNDVLAVEMWQEDCKDWVAMRRAFGAVFDIS-NPPPGAINLRFQVSGSA-GLTWVV 225 (247)
Q Consensus 148 i~~~v~~gS~~~~w~a~~i~n~gg~~~I~sVev~~~~~~~W~~m~R~~gn~W~~~-~~~~gp~~lr~~vt~~~-G~~~vv 225 (247)
|+|+|+++| ++|||+++|.|+||.++|++|||++.++.+|++|+|+||++|+.+ +++.+||+ ||+|+.+ | ++++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls--~Rvts~~~G-~~vv 76 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLS--FRVTSGDSG-QTVV 76 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEE--EEEEETTTS-EEEE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEE--EEEEEcCCC-eEEE
Confidence 689999999 899999999999999999999999999999999999999999987 77888855 5557767 6 9999
Q ss_pred EecccC
Q 025810 226 ANNAIP 231 (247)
Q Consensus 226 ~~~vip 231 (247)
++||||
T Consensus 77 ~~nViP 82 (82)
T PF01357_consen 77 ADNVIP 82 (82)
T ss_dssp EEEEE-
T ss_pred EecccC
Confidence 999998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.86 E-value=2.6e-22 Score=150.61 Aligned_cols=70 Identities=37% Similarity=0.753 Sum_probs=62.3
Q ss_pred EEEec-cccCCCCCCCceEEEEeC-CCCcccC-CcEEEEEeeCCCCC--------------CCCeeeCHHHHhhcccccc
Q 025810 60 VAGVS-RLWNNGTGCGACYQVRCN-VPEVCTD-YGVYVVVTDYGEGD--------------DTDFVLSPRAFGRMALVDK 122 (247)
Q Consensus 60 ~aA~s-~~~~~g~~CG~C~~V~c~-~~~~C~~-~~v~V~V~D~Cp~~--------------~~~~DLS~~aF~~ia~~~~ 122 (247)
+||+| .||++|++||+||||+|. ++++|.+ ++|+|+|||+||.+ +.|||||++||.+||.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 47999 999999999999999996 5668986 48999999999962 5899999999999994
Q ss_pred ccccccCcEEEEEE
Q 025810 123 SEELYTFGVVDVEF 136 (247)
Q Consensus 123 ~~~~~~~G~~~i~w 136 (247)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 5799999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.79 E-value=1.3e-19 Score=133.05 Aligned_cols=70 Identities=40% Similarity=0.623 Sum_probs=58.8
Q ss_pred EEEec-cccCCCCCCCceEEEEeC--CCCc--ccC--CcEEEEEeeCCCCCC-CCeeeCHHHHhhccccccccccccCcE
Q 025810 60 VAGVS-RLWNNGTGCGACYQVRCN--VPEV--CTD--YGVYVVVTDYGEGDD-TDFVLSPRAFGRMALVDKSEELYTFGV 131 (247)
Q Consensus 60 ~aA~s-~~~~~g~~CG~C~~V~c~--~~~~--C~~--~~v~V~V~D~Cp~~~-~~~DLS~~aF~~ia~~~~~~~~~~~G~ 131 (247)
+||++ .+|++|..||+||+++|. .... |.. ++|+|+|+|+||+|. .|||||+.||++|+. ++.|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~-------~~~G~ 73 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD-------PDAGV 73 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS-------TTCSS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC-------CCceE
Confidence 58999 999999999999999993 2323 777 999999999999975 999999999999995 57999
Q ss_pred EEEEE
Q 025810 132 VDVEF 136 (247)
Q Consensus 132 ~~i~w 136 (247)
++|+|
T Consensus 74 i~V~w 78 (78)
T PF03330_consen 74 IPVEW 78 (78)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.07 E-value=1.2e-10 Score=90.26 Aligned_cols=63 Identities=25% Similarity=0.437 Sum_probs=46.0
Q ss_pred CCCCCceEEEEeCCCCcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEee
Q 025810 70 GTGCGACYQVRCNVPEVCTDYGVYVVVTDYGEGDDTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPC 141 (247)
Q Consensus 70 g~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C 141 (247)
-..||+|++||.+. ++.+++|+|+|+|+.+ +|||.+.+|++|-..+. ....|.+.|+|++|+|
T Consensus 57 q~~CGkClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG~---G~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 57 QDSCGKCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDGQ---GYAQGHLIVDYEFVDC 119 (119)
T ss_dssp GGGTT-EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSSH---HHHHTEEEEEEEEE--
T ss_pred cccccceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCCc---ccccceEEEEEEEEcC
Confidence 36899999999654 4778999999999966 99999999999975432 3578999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.32 E-value=3.7e-06 Score=66.47 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=49.7
Q ss_pred CceEEEec--cccCCCCCCCceEEEEeCCCCcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhccccccccccccCcEEEE
Q 025810 57 DANVAGVS--RLWNNGTGCGACYQVRCNVPEVCTDYGVYVVVTDYGEGDDTDFVLSPRAFGRMALVDKSEELYTFGVVDV 134 (247)
Q Consensus 57 ~~~~aA~s--~~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i 134 (247)
--+|.+.. .-|+ +..||.|+|++- ++++|.|..+|.-+ ..|+|+.+||+.|.+.. ....|+|++
T Consensus 42 Fp~IGg~~~V~gWn-S~~CGtC~~lty------~g~si~vlaID~a~---~gfnis~~A~n~LT~g~----a~~lG~V~a 107 (119)
T PF07249_consen 42 FPYIGGAPAVAGWN-SPNCGTCWKLTY------NGRSIYVLAIDHAG---GGFNISLDAMNDLTNGQ----AVELGRVDA 107 (119)
T ss_dssp TTSEEEETT--STT--TTTT-EEEEEE------TTEEEEEEEEEE-S---SSEEE-HHHHHHHHTS-----CCCC-EEE-
T ss_pred CCeeccccccccCC-CCCCCCeEEEEE------CCeEEEEEEEecCC---CcccchHHHHHHhcCCc----ccceeEEEE
Confidence 34677777 6675 578999999996 26899999999843 46999999999998642 235899999
Q ss_pred EEEEEe
Q 025810 135 EFLRVP 140 (247)
Q Consensus 135 ~w~~V~ 140 (247)
++++|+
T Consensus 108 ~~~qV~ 113 (119)
T PF07249_consen 108 TYTQVD 113 (119)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.88 E-value=0.00017 Score=62.07 Aligned_cols=95 Identities=23% Similarity=0.126 Sum_probs=68.6
Q ss_pred EEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEeCCCCcccCCcEEEEEeeCCCCC-CCC
Q 025810 28 SRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVSRLWNNGTGCGACYQVRCNVPEVCTDYGVYVVVTDYGEGD-DTD 106 (247)
Q Consensus 28 g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~-~~~ 106 (247)
|.|+|||..-. | ...|.|-.- +. ..++||-.. ...|..++|+... ++++|+|+|.|++|-- ..-
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~y-~~---~~~tAAHkt-----LPlgT~V~VtNl~----ngrsviVrVnDRGPf~~gRi 65 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEVY-NM---KALTAAHKT-----LPFNTYVKVTNLH----NNRSVIVRINDRGPFSDDRI 65 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCeec-CC---Ccccccccc-----CCCCCEEEEEECC----CCCEEEEEEeCCCCCCCCCE
Confidence 67999986411 1 234444321 10 234544333 3789999999765 4789999999999974 478
Q ss_pred eeeCHHHHhhccccccccccccCcEEEEEEEEEeeccc
Q 025810 107 FVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCRFR 144 (247)
Q Consensus 107 ~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~~~ 144 (247)
+|||+.|+.+|+ ....|+.+|+.+.+.....
T Consensus 66 IDLS~aAA~~Lg-------~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 66 IDLSHAAAREIG-------LISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred EECCHHHHHHcC-------CCcCceEEEEEEEEecCCC
Confidence 999999999999 5679999999999987653
No 13
>PRK10672 rare lipoprotein A; Provisional
Probab=97.27 E-value=0.003 Score=58.71 Aligned_cols=91 Identities=19% Similarity=0.106 Sum_probs=60.6
Q ss_pred eEEEEEeCCCCCCCCCCcccCCCCCCCCCCCceEEEeccccCCCCCCCceEEEEeCCCCcccCCcEEEEEeeCCCCC-CC
Q 025810 27 SSRASFYGSPDGLGTPAGACGFGAYGKTVNDANVAGVSRLWNNGTGCGACYQVRCNVPEVCTDYGVYVVVTDYGEGD-DT 105 (247)
Q Consensus 27 ~g~aT~y~~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~-~~ 105 (247)
.|.|+|||..-. | ...|.|-.- + ...++||-.. ..-|..++|+... ++++|+|+|.|++|-- ..
T Consensus 80 ~G~ASwYg~~f~-G-~~TA~Ge~~-~---~~~~tAAH~t-----LPlps~vrVtNl~----ngrsvvVrVnDRGP~~~gR 144 (361)
T PRK10672 80 AGLAAIYDAEAG-S-NLTASGERF-D---PNALTAAHPT-----LPIPSYVRVTNLA----NGRMIVVRINDRGPYGPGR 144 (361)
T ss_pred EEEEEEeCCccC-C-CcCcCceee-c---CCcCeeeccC-----CCCCCEEEEEECC----CCcEEEEEEeCCCCCCCCC
Confidence 788888886421 1 112332110 1 0234544332 3578889999765 4889999999999975 47
Q ss_pred CeeeCHHHHhhccccccccccccCcEEEEEEEEE
Q 025810 106 DFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRV 139 (247)
Q Consensus 106 ~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V 139 (247)
-+|||..|+.+|+. ...+.+.|+.-.|
T Consensus 145 iiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 145 VIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred eeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 89999999999994 3456777777666
No 14
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.24 E-value=0.0011 Score=58.08 Aligned_cols=59 Identities=19% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCceEEEEeCCCCcccCCcEEEEEeeCCCCC-CCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeec
Q 025810 73 CGACYQVRCNVPEVCTDYGVYVVVTDYGEGD-DTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCR 142 (247)
Q Consensus 73 CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~-~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~ 142 (247)
=|.-.+|+..+ ++++|+|+|.|++|-- ...+|||..|+++|+ ..+.|+.+|+.+++.+.
T Consensus 119 ~~t~v~VtNl~----NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~-------~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 119 LPTYVRVTNLD----NGRSVVVRINDRGPFVSGRIIDLSKAAADKLG-------MIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCCEEEEEEcc----CCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC-------CccCceEEEEEEEeccc
Confidence 45677898765 4789999999999974 478999999999999 45799999999999876
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=90.56 E-value=0.26 Score=42.36 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=31.8
Q ss_pred EEEec-cccCCCCCCCceEEEEeCCCCcccCCcEEEEEeeCCCC-CCCCeeeCHH
Q 025810 60 VAGVS-RLWNNGTGCGACYQVRCNVPEVCTDYGVYVVVTDYGEG-DDTDFVLSPR 112 (247)
Q Consensus 60 ~aA~s-~~~~~g~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~-~~~~~DLS~~ 112 (247)
+||.+ .-..+...|++|||++=++.+ -++|+.+|+|++.=-. ..+||||...
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-l~GKkmiVQ~tNtG~dlg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP-LKGKKMIVQVTNTGGDLGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST-TTT-EEEEEEEEE-TTTTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC-cCCCEeEEEecccCCCCCCCeEEEEeC
Confidence 55665 433344779999999976521 3578899999987644 4589998644
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=88.20 E-value=0.93 Score=36.38 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=33.6
Q ss_pred CCc-ceEEEEEEecCCCCeEEcccccCc-------------eeecC--CC-CCCCeeEEEEEEecCC
Q 025810 171 GQN-DVLAVEMWQEDCKDWVAMRRAFGA-------------VFDIS--NP-PPGAINLRFQVSGSAG 220 (247)
Q Consensus 171 g~~-~I~sVev~~~~~~~W~~m~R~~gn-------------~W~~~--~~-~~gp~~lr~~vt~~~G 220 (247)
|.+ +|+.|||..+++.+|++.+...-. .|++. -+ +.|...|.+|-++..|
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G 104 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESG 104 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccc
Confidence 344 999999999888999976643211 35542 22 2578888888888887
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=83.51 E-value=2.6 Score=38.73 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=36.6
Q ss_pred CCcceEEEEEEecCCCCeEEcccccC----c---eeecC-CCCCCCeeEEEEEEecCC
Q 025810 171 GQNDVLAVEMWQEDCKDWVAMRRAFG----A---VFDIS-NPPPGAINLRFQVSGSAG 220 (247)
Q Consensus 171 g~~~I~sVev~~~~~~~W~~m~R~~g----n---~W~~~-~~~~gp~~lr~~vt~~~G 220 (247)
|..+|+.|||..+++.+|++..-... - .|+.. .+.+|...|.+|.++..|
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g 291 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTG 291 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCC
Confidence 44689999999988889997654321 1 45443 234688899999999888
No 18
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=69.32 E-value=14 Score=34.86 Aligned_cols=50 Identities=14% Similarity=0.397 Sum_probs=36.1
Q ss_pred CCcceEEEEEEecCCCCeEEccc--ccCc----eeecC-CC-CCCCeeEEEEEEecCC
Q 025810 171 GQNDVLAVEMWQEDCKDWVAMRR--AFGA----VFDIS-NP-PPGAINLRFQVSGSAG 220 (247)
Q Consensus 171 g~~~I~sVev~~~~~~~W~~m~R--~~gn----~W~~~-~~-~~gp~~lr~~vt~~~G 220 (247)
|...|++|||..+++.+|+..+- ..+. .|+.. .+ ..|.+.|..|-++..|
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G 343 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDG 343 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCC
Confidence 45689999999988889997542 2222 35543 22 3688899999999888
No 19
>PLN00177 sulfite oxidase; Provisional
Probab=67.93 E-value=12 Score=35.59 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=34.9
Q ss_pred CCCcceEEEEEEecCCCCeEEcccc---------------cCc--eeecCCCCCCCeeEEEEEEecCC
Q 025810 170 GGQNDVLAVEMWQEDCKDWVAMRRA---------------FGA--VFDISNPPPGAINLRFQVSGSAG 220 (247)
Q Consensus 170 gg~~~I~sVev~~~~~~~W~~m~R~---------------~gn--~W~~~~~~~gp~~lr~~vt~~~G 220 (247)
||..+|+.|||..+++.+|+..+.. .++ .|+..-..+|...|..|-|+..|
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G 360 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAA 360 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCC
Confidence 4445799999999888899976431 111 23333235577888888888887
No 20
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=66.73 E-value=14 Score=34.29 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=34.6
Q ss_pred CCCcceEEEEEEecCCCCeEEcccc--cC-c---eeecC-CCCCCCeeEEEEEEecCC
Q 025810 170 GGQNDVLAVEMWQEDCKDWVAMRRA--FG-A---VFDIS-NPPPGAINLRFQVSGSAG 220 (247)
Q Consensus 170 gg~~~I~sVev~~~~~~~W~~m~R~--~g-n---~W~~~-~~~~gp~~lr~~vt~~~G 220 (247)
+|.++|+.|||..+++.+|+..+-. .+ . .|+.. .+..++..|..|-++..|
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G 292 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETG 292 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCC
Confidence 3556799999999888899976542 11 1 22222 234567888888888887
No 21
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=56.55 E-value=98 Score=26.92 Aligned_cols=93 Identities=24% Similarity=0.396 Sum_probs=49.7
Q ss_pred CCCCeeeCHHHHhhccccccccccccCcEEEEEEEEEeecccCCceEEEEecCCCCCcEEEEEEEEcCCCcceEEEEEEe
Q 025810 103 DDTDFVLSPRAFGRMALVDKSEELYTFGVVDVEFLRVPCRFRGYNLKFKVHENSKYPQYLAVSMLYVGGQNDVLAVEMWQ 182 (247)
Q Consensus 103 ~~~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~~V~C~~~g~ni~~~v~~gS~~~~w~a~~i~n~gg~~~I~sVev~~ 182 (247)
++.+|.++|.+|..=. | .|..-+=...+ .+.|.|++.| ++|.|.+..-..+|..-.|.+
T Consensus 46 dp~~FyV~P~~f~~~t-----------G----~WY~~~~~~~~-~~aF~V~~Ps-----l~l~v~d~~t~~dvt~~~V~~ 104 (209)
T PF12863_consen 46 DPTNFYVSPAAFGGKT-----------G----NWYQWNGTPKG-DVAFYVQDPS-----LSLKVWDANTDKDVTGKTVPR 104 (209)
T ss_pred CCcCEEEChHHhCCcc-----------c----ceEecCCCCCc-ceEEEEeCCc-----eEEEEEeccccccccCceecc
Confidence 3789999999997432 2 24443333333 8999998865 677777653244554434432
Q ss_pred cCCCCeEEcccccCceeec---CCCCCCCeeEEEEEEecCC
Q 025810 183 EDCKDWVAMRRAFGAVFDI---SNPPPGAINLRFQVSGSAG 220 (247)
Q Consensus 183 ~~~~~W~~m~R~~gn~W~~---~~~~~gp~~lr~~vt~~~G 220 (247)
+.--.++ -+.|-+.. .+....+..++|+|++-+|
T Consensus 105 G~~v~Fr----I~tNL~~~~~R~g~~~~~~~v~I~V~~P~G 141 (209)
T PF12863_consen 105 GDNVNFR----IDTNLYSIFQRGGYTPGDGPVDIKVTTPSG 141 (209)
T ss_pred CCeEEEE----EcccHHHHhhcCCCCCCcceEEEEEeCCCC
Confidence 2211121 12233321 2222222237788887777
No 22
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=55.50 E-value=39 Score=31.79 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=34.7
Q ss_pred CCCcceEEEEEEecCCCCeEEcccc--cC-------c---eeecC-CCCC-CCeeEEEEEEecCC
Q 025810 170 GGQNDVLAVEMWQEDCKDWVAMRRA--FG-------A---VFDIS-NPPP-GAINLRFQVSGSAG 220 (247)
Q Consensus 170 gg~~~I~sVev~~~~~~~W~~m~R~--~g-------n---~W~~~-~~~~-gp~~lr~~vt~~~G 220 (247)
||..+|++|||..+++.+|+...-. .+ - .|... .+.+ |.+.|..|-++..|
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G 337 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAY 337 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCC
Confidence 4556899999999888899976532 11 2 33333 1223 57888888888887
No 23
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=44.72 E-value=54 Score=31.11 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred cceEEEEEEecCCCCeEEcccc--c-----C---c--eeecCC---CCCCCeeEEEEEEecCC
Q 025810 173 NDVLAVEMWQEDCKDWVAMRRA--F-----G---A--VFDISN---PPPGAINLRFQVSGSAG 220 (247)
Q Consensus 173 ~~I~sVev~~~~~~~W~~m~R~--~-----g---n--~W~~~~---~~~gp~~lr~~vt~~~G 220 (247)
.+|++|||..+++.+|+..... . + + .|+..- ..+|.+.|..|-|+..|
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G 362 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESM 362 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCC
Confidence 4799999999888899976432 1 1 1 333331 12488889999998887
No 24
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=39.05 E-value=43 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.1
Q ss_pred cccCcEEEEEEEEEeec---ccCCceEEEEec
Q 025810 126 LYTFGVVDVEFLRVPCR---FRGYNLKFKVHE 154 (247)
Q Consensus 126 ~~~~G~~~i~w~~V~C~---~~g~ni~~~v~~ 154 (247)
.+..|.+.++||.|+=+ ..| .+.|.|++
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G-~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKG-SISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEecc-EEEEEecC
Confidence 57899999999999987 357 88887764
No 25
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=36.85 E-value=87 Score=21.19 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.4
Q ss_pred CceEEEEeCCCCcccCCcEEEEEeeCCCCCCCCeeeCHHHHhhcc
Q 025810 74 GACYQVRCNVPEVCTDYGVYVVVTDYGEGDDTDFVLSPRAFGRMA 118 (247)
Q Consensus 74 G~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~~~~~DLS~~aF~~ia 118 (247)
|.|+||.-. +. .|-|.|.=......|.+++.+|..+-
T Consensus 15 ~~CVEva~~------~~--~v~vRDSk~p~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 15 GNCVEVARL------PG--GVAVRDSKDPDGPVLTFTPAEWAAFL 51 (56)
T ss_pred CCcEEEEee------cc--eEEEecCCCCCCCEEEeCHHHHHHHH
Confidence 889999742 22 27788865446789999999998764
No 26
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.30 E-value=57 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.0
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCcCCc
Q 025810 209 INLRFQVSGSAGLTWVVANNAIPQIWKAGV 238 (247)
Q Consensus 209 ~~lr~~vt~~~G~~~vv~~~vip~~w~~g~ 238 (247)
+.++|++|+....-.|..+.++|..|+.|+
T Consensus 72 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 72 LKVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred cEEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 468999998765334555689999887665
No 27
>PLN02252 nitrate reductase [NADPH]
Probab=36.26 E-value=94 Score=32.81 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=36.0
Q ss_pred EcCCCcceEEEEEEecCCCCeEEccccc-------Cc--ee---ecCC---CCCCCeeEEEEEEecCC
Q 025810 168 YVGGQNDVLAVEMWQEDCKDWVAMRRAF-------GA--VF---DISN---PPPGAINLRFQVSGSAG 220 (247)
Q Consensus 168 n~gg~~~I~sVev~~~~~~~W~~m~R~~-------gn--~W---~~~~---~~~gp~~lr~~vt~~~G 220 (247)
+.||...|+.|||..+++.+|+..+... +. .| ++.- .+.|...|.+|-++..|
T Consensus 367 ~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g 434 (888)
T PLN02252 367 YSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESM 434 (888)
T ss_pred ECCCCCceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCC
Confidence 4455568999999999899999766532 11 24 3321 24577788888887776
No 28
>KOG1779 consensus 40s ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=33.63 E-value=47 Score=24.47 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=18.6
Q ss_pred CCCCceEEEEeCCCCcccCCcEEEEEeeCCCCCCC
Q 025810 71 TGCGACYQVRCNVPEVCTDYGVYVVVTDYGEGDDT 105 (247)
Q Consensus 71 ~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~~~ 105 (247)
..|+.|+++++.- ....+|+| |++|..
T Consensus 35 VkC~gc~~iT~vf-----SHaqtvVv---c~~c~~ 61 (84)
T KOG1779|consen 35 VKCPGCFKITTVF-----SHAQTVVV---CEGCST 61 (84)
T ss_pred EEcCCceEEEEEe-----ecCceEEE---cCCCce
Confidence 4799999999743 44555555 777653
No 29
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=32.29 E-value=2.1e+02 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.6
Q ss_pred CCcEEEEEEEEcCCCcceEEEEEEe
Q 025810 158 YPQYLAVSMLYVGGQNDVLAVEMWQ 182 (247)
Q Consensus 158 ~~~w~a~~i~n~gg~~~I~sVev~~ 182 (247)
-+||.-|.|.|.|| ...++|+|..
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~g 72 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRG 72 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEE
Confidence 35999999999975 5688999874
No 30
>PRK10301 hypothetical protein; Provisional
Probab=31.56 E-value=68 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=20.1
Q ss_pred ccCcEEEEEEEEEeec---ccCCceEEEEe
Q 025810 127 YTFGVVDVEFLRVPCR---FRGYNLKFKVH 153 (247)
Q Consensus 127 ~~~G~~~i~w~~V~C~---~~g~ni~~~v~ 153 (247)
+..|.+.|+||-|+=+ .+| .+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 5699999999999975 246 6766664
No 31
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.32 E-value=3e+02 Score=22.03 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=48.6
Q ss_pred CCeeeCHHHHhhccccccccccccCcEEEEEEE-------EEeecccCCceE-EEEecCCCCCcEEEEEEEEcCCCcceE
Q 025810 105 TDFVLSPRAFGRMALVDKSEELYTFGVVDVEFL-------RVPCRFRGYNLK-FKVHENSKYPQYLAVSMLYVGGQNDVL 176 (247)
Q Consensus 105 ~~~DLS~~aF~~ia~~~~~~~~~~~G~~~i~w~-------~V~C~~~g~ni~-~~v~~gS~~~~w~a~~i~n~gg~~~I~ 176 (247)
-||.+....|..|-+. ..-.+|+ -+.|..-| |+ |.. .-| +||=.++.+.=.. .+.++
T Consensus 43 ~hfivpas~f~ll~g~----------efitty~~gth~aqhtfck~cG--V~sf~~-~rs-~p~~~~i~phCld-~gTlr 107 (134)
T KOG4192|consen 43 RHFIVPASRFVLLVGA----------EFITTYTFGTHQAQHTFCKRCG--VQSFYS-PRS-NPYGKGIAPHCLD-EGTLR 107 (134)
T ss_pred eEEEEeccceEEEeCc----------ceEEEEEeccchhheeeecccc--ceeccc-ccc-CCCceeecceeec-CCcee
Confidence 5888888888877531 1233333 46676655 33 332 334 7888888876554 46899
Q ss_pred EEEEEecCCCCeEEccc
Q 025810 177 AVEMWQEDCKDWVAMRR 193 (247)
Q Consensus 177 sVev~~~~~~~W~~m~R 193 (247)
+|++..-++++|..+..
T Consensus 108 ~v~~~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 108 SVVWEEFNGQDWEATME 124 (134)
T ss_pred EEEEEEecCcchhHhhh
Confidence 99999888888886554
No 32
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=26.56 E-value=72 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=17.4
Q ss_pred ccCcEEEEEEEEEeec---ccCCceEEEEe
Q 025810 127 YTFGVVDVEFLRVPCR---FRGYNLKFKVH 153 (247)
Q Consensus 127 ~~~G~~~i~w~~V~C~---~~g~ni~~~v~ 153 (247)
+..|.+.|+||-|+=+ ..| .+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G-~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSG-SFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEE-EEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCC-EEEEEEC
Confidence 6799999999999954 235 5666553
No 33
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=25.96 E-value=39 Score=21.34 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=9.2
Q ss_pred cccCCCCcCCc
Q 025810 228 NAIPQIWKAGV 238 (247)
Q Consensus 228 ~vip~~w~~g~ 238 (247)
.+.|++|++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 47899999886
No 34
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=25.22 E-value=2e+02 Score=25.09 Aligned_cols=44 Identities=16% Similarity=0.349 Sum_probs=31.5
Q ss_pred CceEEEEecCCCCCcEEEEEEEEcCCCcceEEEEEEecCCCCeEEcc
Q 025810 146 YNLKFKVHENSKYPQYLAVSMLYVGGQNDVLAVEMWQEDCKDWVAMR 192 (247)
Q Consensus 146 ~ni~~~v~~gS~~~~w~a~~i~n~gg~~~I~sVev~~~~~~~W~~m~ 192 (247)
+.|.+-|-+.. ++++|.+++++. .+.+..+.+=.-+-..|+.|+
T Consensus 108 k~I~vWV~G~n-~~h~L~v~lrD~--~G~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 108 KSISVWVYGDN-YPHWLEVLLRDA--KGEVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEEECCC-CCceEEEEEEcC--CCCEEEEEeeeecCCceeEEE
Confidence 46777665444 799999999988 566666666333446799887
No 35
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=24.39 E-value=1.2e+02 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=17.4
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCcCCc
Q 025810 209 INLRFQVSGSAGLTWVVANNAIPQIWKAGV 238 (247)
Q Consensus 209 ~~lr~~vt~~~G~~~vv~~~vip~~w~~g~ 238 (247)
..++|.+|+....-.|+.....|.+++.|+
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~ 100 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQ 100 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTS
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCC
Confidence 378899998865335556789999887665
No 36
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=23.92 E-value=3.3e+02 Score=20.73 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=31.1
Q ss_pred CcceEEEEEEecCCCCe--------EEccccc----CceeecC-CCCCCCeeEEEEEEecCCCEEEEEe
Q 025810 172 QNDVLAVEMWQEDCKDW--------VAMRRAF----GAVFDIS-NPPPGAINLRFQVSGSAGLTWVVAN 227 (247)
Q Consensus 172 ~~~I~sVev~~~~~~~W--------~~m~R~~----gn~W~~~-~~~~gp~~lr~~vt~~~G~~~vv~~ 227 (247)
+.+|++|.|.-.....| .+|++.. ..+|+.. .++...+.-.|.+++ +| +++...
T Consensus 31 k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~-~~-~~~~y~ 97 (120)
T PF02903_consen 31 KNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELED-GG-ETYYYG 97 (120)
T ss_dssp TTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEE-TT-EEEEEE
T ss_pred CCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEe-CC-EEEEEe
Confidence 45677777754444444 4566532 3488753 222345788899987 55 666665
No 37
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=22.59 E-value=61 Score=29.48 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=12.9
Q ss_pred hhhHHHHHHHhhhhc
Q 025810 4 CQYYLLSVVLLLPAL 18 (247)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (247)
.+.+|||.|++||+.
T Consensus 7 GRVLLVCALCVLWCg 21 (291)
T PTZ00459 7 GRVLLVCALCVLWCG 21 (291)
T ss_pred chHHHHHHHHHHhcC
Confidence 358999999999987
No 38
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.95 E-value=41 Score=26.42 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCCCCCceEEEEeCCCCcccCCcEEEEEeeCCCCCCCCeeeCHH
Q 025810 69 NGTGCGACYQVRCNVPEVCTDYGVYVVVTDYGEGDDTDFVLSPR 112 (247)
Q Consensus 69 ~g~~CG~C~~V~c~~~~~C~~~~v~V~V~D~Cp~~~~~~DLS~~ 112 (247)
-|-.+.+=++|+|.+ |.+.+-..-=+|.|+.|+..+-|.++
T Consensus 60 IGmlStkav~V~CP~---C~K~TKmLGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 60 IGMLSTKAVQVECPN---CGKQTKMLGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred hhhhcccceeeECCC---CCChHhhhchhhccCcCCCcCccCch
Confidence 345566668899854 66555444445999999877766544
No 39
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.88 E-value=1.4e+02 Score=24.85 Aligned_cols=30 Identities=17% Similarity=0.459 Sum_probs=20.8
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCcCCc
Q 025810 209 INLRFQVSGSAGLTWVVANNAIPQIWKAGV 238 (247)
Q Consensus 209 ~~lr~~vt~~~G~~~vv~~~vip~~w~~g~ 238 (247)
+.++|++|+....-.|+...++|..|+.|+
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~ 107 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQ 107 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCC
Confidence 368888888765224444688998887665
No 40
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.60 E-value=1.4e+02 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.468 Sum_probs=20.0
Q ss_pred eeEEEEEEecCCCEEEEEecccCCCCcCCc
Q 025810 209 INLRFQVSGSAGLTWVVANNAIPQIWKAGV 238 (247)
Q Consensus 209 ~~lr~~vt~~~G~~~vv~~~vip~~w~~g~ 238 (247)
+.++|++|+....-.|+...++|..|+.|+
T Consensus 78 l~v~F~vtD~~~~v~V~Y~GilPDlFrEG~ 107 (160)
T PRK13165 78 LKVSFTLYDAGGSVTVTYEGILPDLFREGQ 107 (160)
T ss_pred eEEEEEEEcCCeEEEEEEcccCCccccCCC
Confidence 468888887764223444578898887665
No 41
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=21.09 E-value=3.6e+02 Score=20.07 Aligned_cols=65 Identities=12% Similarity=0.391 Sum_probs=43.3
Q ss_pred CcEEEEEEEEcCCCcceEEEEE--EecCC----CCeEEcccccCceeec------CCCCCCCeeEEEEEEecCCCEEE
Q 025810 159 PQYLAVSMLYVGGQNDVLAVEM--WQEDC----KDWVAMRRAFGAVFDI------SNPPPGAINLRFQVSGSAGLTWV 224 (247)
Q Consensus 159 ~~w~a~~i~n~gg~~~I~sVev--~~~~~----~~W~~m~R~~gn~W~~------~~~~~gp~~lr~~vt~~~G~~~v 224 (247)
..-|.+.+.+......|++|.+ +...+ -.|...++.....|.. .+.-.|.+.+.+..+..+| +.+
T Consensus 10 ~g~~~v~v~~~~~~~~i~~V~~aVWSe~nGQdDL~WY~a~k~~dg~y~~~i~~~nH~~~~G~Y~vhvY~~~~~G-~~~ 86 (95)
T PF08481_consen 10 NGTFTVTVTNVSSPKGIKSVKFAVWSEENGQDDLKWYTATKQSDGSYSVTIDLSNHKNETGTYHVHVYITDADG-KMI 86 (95)
T ss_pred CCeEEEEEEeccCCCCeeEEEEEEEcCCCCCCccEEEEeeecCCCcEEEEEeHHHCCCCccEEEEEEEEEcCCC-cEE
Confidence 4567788888866778888885 33322 2588887666666653 1334588889988888888 433
No 42
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.28 E-value=67 Score=19.74 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=13.9
Q ss_pred CCCCCCCCeeeCHHHHh
Q 025810 99 YGEGDDTDFVLSPRAFG 115 (247)
Q Consensus 99 ~Cp~~~~~~DLS~~aF~ 115 (247)
+||.|...|.|+++...
T Consensus 4 ~CP~C~~~f~v~~~~l~ 20 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLP 20 (37)
T ss_pred ECCCCCceEEcCHHHcc
Confidence 59999999999887543
Done!