BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025812
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 124/207 (59%), Gaps = 21/207 (10%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKENAMPEKKVIVAVR 180
+L++ L E F GVFIRAP +L+ G +V+VL+++ IVA +
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH------------NGRIVAAK 160
Query: 181 QGNLLGTAFHPELTADTRWHSYFLKMM 207
QG LG +FHPELT D R F++M+
Sbjct: 161 QGQFLGCSFHPELTEDHRVTQLFVEMV 187
>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|E Chain E, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|F Chain F, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 208
Score = 166 bits (421), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 20/207 (9%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVL +QG EH+ AL +LGV+ + ++ P+QL V LI+PGGESTTM R+ + ++
Sbjct: 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
L E + G PV+ TCAG+I LA + K QE +G LD TV RN +G Q++SFE
Sbjct: 81 DEKLVERINNGLPVFATCAGVILLAKRI---KNYSQEKLGVLDITVERNAYGRQVESFET 137
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKENAMPEKKVIVAVR 180
+ +PA+ G + FR +FIRAP +++ G +V++LA Y V V+
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATYDYDP------------VLVK 180
Query: 181 QGNLLGTAFHPELTADTRWHSYFLKMM 207
+GN+L FHPELT D R H YFL+M+
Sbjct: 181 EGNILACTFHPELTDDLRLHRYFLEMV 207
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 121/205 (59%), Gaps = 21/205 (10%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
+GVL LQG+ EH+ A++ G + V ++K +QL+ + L++PGGESTT RL + + L
Sbjct: 26 IGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTXRRLIDRYGLXE 85
Query: 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
L++F GKP +GTCAGLI LA + VG + +G D TV RN FG Q +SFEAEL
Sbjct: 86 PLKQFAAAGKPXFGTCAGLILLAKRIVGYD---EPHLGLXDITVERNSFGRQRESFEAEL 142
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKENAMPEKKVIVAVRQG 182
S+ + + F GVFIRAP +++ G VDVLA Y IVA RQG
Sbjct: 143 SIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY------------NDRIVAARQG 184
Query: 183 NLLGTAFHPELTADTRWHSYFLKMM 207
LG +FHPELT D R YFL +
Sbjct: 185 QFLGCSFHPELTDDHRLXQYFLNXV 209
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 124/207 (59%), Gaps = 21/207 (10%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKENAMPEKKVIVAVR 180
+L++ L E F GVFIRAP +L+ G +V+VL+++ IVA +
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH------------NGRIVAAK 160
Query: 181 QGNLLGTAFHPELTADTRWHSYFLKMM 207
QG LG +F+PELT D R F++M+
Sbjct: 161 QGQFLGCSFNPELTEDHRVTQLFVEMV 187
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 121/207 (58%), Gaps = 21/207 (10%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTT RL + +
Sbjct: 22 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTXRRLIDTYQF 81
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP +GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 82 XEPLREFAAQGKPXFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 138
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPVPSNKENAMPEKKVIVAVR 180
+L++ L E F GVFIRAP +L+ G +V+VL+++ IVA +
Sbjct: 139 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH------------NGRIVAAK 180
Query: 181 QGNLLGTAFHPELTADTRWHSYFLKMM 207
QG LG +FHPELT D R F++ +
Sbjct: 181 QGQFLGCSFHPELTEDHRVTQLFVEXV 207
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 126/209 (60%), Gaps = 28/209 (13%)
Query: 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
VVGVLALQG F EH ALKRLG++ E+RK + L+ + +LI+PGGESTT+ +LA + +
Sbjct: 4 VVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIE 63
Query: 62 PALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
+R+ V+ G ++GTCAG I+LA + VG Q +G L+ V RN FG Q++SFE
Sbjct: 64 DEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFEE 121
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYPVPSNKENAMPEKKVIV 177
+L V L S F GVFIRAP +G V+VLA D P V
Sbjct: 122 DLEVEGLGS-------FHGVFIRAPVFRRLGEGVEVLARLGDLP---------------V 159
Query: 178 AVRQGNLLGTAFHPELTADTRWHSYFLKM 206
VRQG +L ++FHPELT D R H YFL++
Sbjct: 160 LVRQGKVLASSFHPELTEDPRLHRYFLEL 188
>pdb|2ABW|A Chain A, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
pdb|2ABW|B Chain B, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
Length = 227
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 112/216 (51%), Gaps = 19/216 (8%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + +++R L L+IPGGESTT+ R Y
Sbjct: 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ KL G + GGLD T+ RNF
Sbjct: 64 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPSNKENA 169
+GSQ SF L++ ++ + IRAP + ++ D V VLA + S N
Sbjct: 124 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPN- 180
Query: 170 MPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 205
+I AV Q N LGT FHPEL T + YF +
Sbjct: 181 -----IIAAVEQNNCLGTVFHPELLPHTAFQQYFYE 211
>pdb|4ADS|G Chain G, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|H Chain H, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|I Chain I, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|J Chain J, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|K Chain K, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|L Chain L, Crystal Structure Of Plasmodial Plp Synthase Complex
Length = 217
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 112/216 (51%), Gaps = 19/216 (8%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + +++R L L+IPGGESTT+ R Y
Sbjct: 2 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 61
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ KL G + GGLD T+ RNF
Sbjct: 62 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 121
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPSNKENA 169
+GSQ SF L++ ++ + IRAP + ++ D V VLA + S N
Sbjct: 122 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPN- 178
Query: 170 MPEKKVIVAVRQGNLLGTAFHPELTADTRWHSYFLK 205
+I AV Q N LGT F+PEL T + YF +
Sbjct: 179 -----IIAAVEQNNCLGTVFNPELLPHTAFQQYFYE 209
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 28/207 (13%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M++GVLA+QG EH A+K+ G + ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
++ P+ GTCAG++ L+ K G Q L+ +D TV RN +G Q+ SFE
Sbjct: 61 LEKIKN---SNLPILGTCAGMVLLS-KGTGI---NQILLELMDITVKRNAYGRQVDSFEK 113
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLADYPVPSNKENAMPEKKVIVAV 179
E+ L GVFIRAP V + DV+V+A + IV V
Sbjct: 114 EIEFKDLGK-------VYGVFIRAPVVDKILSDDVEVIA------------RDGDKIVGV 154
Query: 180 RQGNLLGTAFHPELTAD-TRWHSYFLK 205
+QG + +FHPEL+ D + + YF++
Sbjct: 155 KQGKYMALSFHPELSEDGYKVYKYFVE 181
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 33/159 (20%)
Query: 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG 95
Q ++II GG ++ A A + + PA+ +GKPV G C G+ + NK G
Sbjct: 66 QGFRAIIISGGPNSVYAEDAPWFD--PAI---FTIGKPVLGICYGMQMM-NKVFGG---- 115
Query: 96 QELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155
TVH+ S + +SV S FRG+ +L G VD
Sbjct: 116 ---------TVHKK---SVREDGVFNISVDNTCS------LFRGLQKEEVVLLTHGDSVD 157
Query: 156 VLAD-YPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPEL 193
+AD + V + N + +A L G FHPE+
Sbjct: 158 KVADGFKVVARSGNIVAG----IANESKKLYGAQFHPEV 192
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 39 SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG--LIFLANKAVGQKL 93
+L++PGG S R F R+FV GKPV+ C G L+ A+ G+KL
Sbjct: 88 DALLLPGGHSPDYLRGDNRFVTF--TRDFVNSGKPVFAICHGPQLLISADVIRGRKL 142
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPGGESTTMARLAEY- 57
VV V+ ++ G+ A++ LG + ++ P + S LI+PG + +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPG-----VGNYGHFV 60
Query: 58 HNLF-----PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDC--TVHRNF 110
NLF +RE+++ GKP+ G C GL L G ++ + N+
Sbjct: 61 DNLFNRGFEKPIREYIESGKPIMGICVGLQAL-------------FAGSVESPKSTGLNY 107
Query: 111 FGSQIQSF-EAELSVPALASQEGGPETF---------RGVFIRA-PAVLDVGPDVDVLAD 159
++ F ++E VP + P R F+ + A+L+ ++ D
Sbjct: 108 IDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLEND 167
Query: 160 -YPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPE 192
+ + K + ++ I AV + N+ T FHPE
Sbjct: 168 GWKIAKAKYGS---EEFIAAVNKNNIFATQFHPE 198
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 33/159 (20%)
Query: 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGG 95
Q ++II GG ++ A A + + PA+ +GKPV G C G+ + NK G
Sbjct: 71 QGFRAIIISGGPNSVYAEDAPWFD--PAI---FTIGKPVLGICYGMQMM-NKVFGG---- 120
Query: 96 QELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155
TVH+ S + +SV S FRG+ +L G VD
Sbjct: 121 ---------TVHKK---SVREDGVFNISVDNTCS------LFRGLQKEEVVLLTHGDSVD 162
Query: 156 VLAD-YPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPEL 193
+AD + V + N + +A L G FHPE+
Sbjct: 163 KVADGFKVVARSGNIVAG----IANESKKLYGAQFHPEV 197
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 44/214 (20%)
Query: 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQ--LQNVSSLIIPGGESTTMARLAEY- 57
VV V+ ++ G+ A++ LG + ++ P + S LI+PG + +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPG-----VGNYGHFV 60
Query: 58 HNLF-----PALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDC--TVHRNF 110
NLF +RE+++ GKP+ G GL L G ++ + N+
Sbjct: 61 DNLFNRGFEKPIREYIESGKPIMGIXVGLQAL-------------FAGSVESPKSTGLNY 107
Query: 111 FGSQIQSF-EAELSVPALASQEGGPETF---------RGVFIRA-PAVLDVGPDVDVLAD 159
++ F ++E VP + P R F+ + A+L+ ++ D
Sbjct: 108 IDFKLSRFDDSEKPVPEIGWNSCIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLEND 167
Query: 160 -YPVPSNKENAMPEKKVIVAVRQGNLLGTAFHPE 192
+ + K + ++ I AV + N+ T FHPE
Sbjct: 168 GWKIAKAKYGS---EEFIAAVNKNNIFATQFHPE 198
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 35 LQNVSSLIIPGG----ESTTMARLAE-YHNLFPALREFVKMGK-PVWGTCAGLIFLANKA 88
++++ ++ PGG + A++A+ ++NL +++ F PVWGTC G L+
Sbjct: 84 FKSINGILFPGGSVDLRRSDYAKVAKIFYNL--SIQSFDDGDYFPVWGTCLGFEELSLLI 141
Query: 89 VGQKLGGQELVGGLDCTVHRNFFGSQIQS 117
G+ L +D + NF G Q+ S
Sbjct: 142 SGECL--LTATDTVDVAMPLNFTGGQLHS 168
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL 93
L L+IPGG + LA ++ ++EF + GKP+ G + LA
Sbjct: 86 DLSKYDGLVIPGGRAPEY--LALTASVVELVKEFSRSGKPIASIXHGQLILA-------- 135
Query: 94 GGQELVGGLDCTVH 107
+ V G CT +
Sbjct: 136 -AADTVNGRKCTAY 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,758,611
Number of Sequences: 62578
Number of extensions: 262717
Number of successful extensions: 601
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 16
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)